diff OrthancServer/Internals/DicomImageDecoder.cpp @ 845:48016722c770 jpeg

refactoring
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 05 Jun 2014 15:58:07 +0200
parents
children 715ab7674993
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/OrthancServer/Internals/DicomImageDecoder.cpp	Thu Jun 05 15:58:07 2014 +0200
@@ -0,0 +1,172 @@
+/**
+ * Orthanc - A Lightweight, RESTful DICOM Store
+ * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege,
+ * Belgium
+ *
+ * This program is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License, or (at your option) any later version.
+ *
+ * In addition, as a special exception, the copyright holders of this
+ * program give permission to link the code of its release with the
+ * OpenSSL project's "OpenSSL" library (or with modified versions of it
+ * that use the same license as the "OpenSSL" library), and distribute
+ * the linked executables. You must obey the GNU General Public License
+ * in all respects for all of the code used other than "OpenSSL". If you
+ * modify file(s) with this exception, you may extend this exception to
+ * your version of the file(s), but you are not obligated to do so. If
+ * you do not wish to do so, delete this exception statement from your
+ * version. If you delete this exception statement from all source files
+ * in the program, then also delete it here.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ * General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ **/
+
+
+#include "../PrecompiledHeadersServer.h"
+#include "DicomImageDecoder.h"
+
+#include "../../Core/OrthancException.h"
+#include "../ToDcmtkBridge.h"
+
+#include <dcmtk/dcmjpls/djcodecd.h>
+#include <dcmtk/dcmjpls/djcparam.h>
+#include <dcmtk/dcmjpeg/djrplol.h>
+#include <boost/lexical_cast.hpp>
+
+#if ORTHANC_JPEG_LOSSLESS_ENABLED == 1
+#endif
+
+
+namespace Orthanc
+{
+  void DicomImageDecoder::SetupImageBuffer(ImageBuffer& target,
+                                           DcmDataset& dataset)
+  {
+    OFString value;
+
+    if (!dataset.findAndGetOFString(ToDcmtkBridge::Convert(DICOM_TAG_COLUMNS), value).good())
+    {
+      throw OrthancException(ErrorCode_BadFileFormat);
+    }
+
+    unsigned int width = boost::lexical_cast<unsigned int>(value.c_str());
+
+    if (!dataset.findAndGetOFString(ToDcmtkBridge::Convert(DICOM_TAG_ROWS), value).good())
+    {
+      throw OrthancException(ErrorCode_BadFileFormat);
+    }
+
+    unsigned int height = boost::lexical_cast<unsigned int>(value.c_str());
+
+    if (!dataset.findAndGetOFString(ToDcmtkBridge::Convert(DICOM_TAG_BITS_STORED), value).good())
+    {
+      throw OrthancException(ErrorCode_BadFileFormat);
+    }
+
+    unsigned int bitsStored = boost::lexical_cast<unsigned int>(value.c_str());
+
+    if (!dataset.findAndGetOFString(ToDcmtkBridge::Convert(DICOM_TAG_PIXEL_REPRESENTATION), value).good())
+    {
+      throw OrthancException(ErrorCode_BadFileFormat);
+    }
+
+    bool isSigned = (boost::lexical_cast<unsigned int>(value.c_str()) != 0);
+
+    unsigned int samplesPerPixel = 1; // By default
+    if (dataset.findAndGetOFString(ToDcmtkBridge::Convert(DICOM_TAG_SAMPLES_PER_PIXEL), value).good())
+    {
+      samplesPerPixel = boost::lexical_cast<unsigned int>(value.c_str());
+    }
+
+    target.SetHeight(height);
+    target.SetWidth(width);
+
+    if (bitsStored == 8 && samplesPerPixel == 1 && !isSigned)
+    {
+      target.SetFormat(PixelFormat_Grayscale8);
+    }
+    else if (bitsStored == 8 && samplesPerPixel == 3 && !isSigned)
+    {
+      target.SetFormat(PixelFormat_RGB24);
+    }
+    else if (bitsStored == 16 && samplesPerPixel == 1 && !isSigned)
+    {
+      target.SetFormat(PixelFormat_Grayscale16);
+    }
+    else if (bitsStored == 16 && samplesPerPixel == 1 && isSigned)
+    {
+      target.SetFormat(PixelFormat_SignedGrayscale16);
+    }
+    else
+    {
+      throw OrthancException(ErrorCode_NotImplemented);
+    }
+  }
+
+
+  bool DicomImageDecoder::IsJpegLossless(const DcmDataset& dataset)
+  {
+    return (dataset.getOriginalXfer() == EXS_JPEGLSLossless ||
+            dataset.getOriginalXfer() == EXS_JPEGLSLossy);
+  }
+
+
+#if ORTHANC_JPEG_LOSSLESS_ENABLED == 1
+  void DicomImageDecoder::DecodeJpegLossless(ImageBuffer& target,
+                                             DcmDataset& dataset)
+  {
+    if (!IsJpegLossless(dataset))
+    {
+      throw OrthancException(ErrorCode_BadParameterType);
+    }
+
+    DcmElement *element = NULL;
+    if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_PIXEL_DATA), element).good())
+    {
+      throw OrthancException(ErrorCode_BadFileFormat);
+    }
+
+    DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
+    DcmPixelSequence* pixelSequence = NULL;
+    if (!pixelData.getEncapsulatedRepresentation
+        (dataset.getOriginalXfer(), NULL, pixelSequence).good())
+    {
+      throw OrthancException(ErrorCode_BadFileFormat);
+    }
+
+    SetupImageBuffer(target, dataset);
+
+    ImageAccessor accessor(target.GetAccessor());
+
+    /**
+     * The "DJLSLosslessDecoder" and "DJLSNearLosslessDecoder" in DCMTK
+     * are exactly the same, except for the "supportedTransferSyntax()"
+     * virtual function.
+     * http://support.dcmtk.org/docs/classDJLSDecoderBase.html
+     **/
+
+    DJLSLosslessDecoder decoder; DJLSCodecParameter parameters;
+    //DJLSNearLosslessDecoder decoder; DJLSCodecParameter parameters;
+
+    Uint32 startFragment = 0;  // Default 
+    OFString decompressedColorModel;  // Out
+    DJ_RPLossless representationParameter;
+    OFCondition c = decoder.decodeFrame(&representationParameter, pixelSequence, &parameters, 
+                                        &dataset, 0, startFragment, accessor.GetBuffer(), 
+                                        accessor.GetSize(), decompressedColorModel);
+
+    if (!c.good())
+    {
+      throw OrthancException(ErrorCode_InternalError);
+    }
+  }
+#endif
+}