--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PalanthirExplorer/explorer.js	Wed Sep 05 13:24:59 2012 +0200
@@ -0,0 +1,704 @@
+// http://stackoverflow.com/questions/1663741/is-there-a-good-jquery-drag-and-drop-file-upload-plugin
+
+
+// Forbid the access to IE
+if ($.browser.msie)
+{
+  alert("Please use Mozilla Firefox or Google Chrome. Microsoft Internet Explorer is not supported.");
+}
+
+// http://jquerymobile.com/demos/1.1.0/docs/api/globalconfig.html
+//$.mobile.ajaxEnabled = false;
+//$.mobile.page.prototype.options.addBackBtn = true;
+//$.mobile.defaultPageTransition = 'slide';
+
+// http://stackoverflow.com/a/4673436
+String.prototype.format = function() {
+  var args = arguments;
+  return this.replace(/{(\d+)}/g, function(match, number) { 
+    /*return typeof args[number] != 'undefined'
+      ? args[number]
+      : match;*/
+
+    return args[number];
+  });
+};
+
+
+$(document).ready(function() {
+  var $tree = $('#dicom-tree');
+  $tree.tree({
+    autoEscape: false
+  });
+
+  $('#dicom-tree').bind(
+    'tree.click',
+    function(event) {
+      if (event.node.is_open)
+        $tree.tree('closeNode', event.node, true);
+      else
+        $tree.tree('openNode', event.node, true);
+    }
+  );
+});
+
+
+function SplitLongUid(s)
+{
+  return '<span>' + s.substr(0, s.length / 2) + '</span> <span>' + s.substr(s.length / 2, s.length - s.length / 2) + '</span>';
+}
+
+
+function ParseDicomDate(s)
+{
+  y = parseInt(s.substr(0, 4), 10);
+  m = parseInt(s.substr(4, 2), 10) - 1;
+  d = parseInt(s.substr(6, 2), 10);
+
+  if (y == null || m == null || d == null ||
+      !isFinite(y) || !isFinite(m) || !isFinite(d))
+  {
+    return null;
+  }
+
+  if (y < 1900 || y > 2100 ||
+      m < 0 || m >= 12 ||
+      d <= 0 || d >= 32)
+  {
+    return null;
+  }
+
+  return new Date(y, m, d);
+}
+
+
+function FormatDicomDate(s)
+{
+  if (s == undefined)
+    return "No date";
+
+  var d = ParseDicomDate(s);
+  if (d == null)
+    return '?';
+  else
+    return d.toString('dddd, MMMM d, yyyy');
+}
+
+
+
+function SortOnDicomTag(arr, tag, isInteger, reverse)
+{
+  var defaultValue;
+  if (isInteger)
+    defaultValue = 0;
+  else
+    defaultValue = '';
+
+  arr.sort(function(a, b) {
+    var ta = a.MainDicomTags[tag];
+    var tb = b.MainDicomTags[tag];
+    var order;
+
+    if (ta == undefined)
+      ta = defaultValue;
+
+    if (tb == undefined)
+      tb = defaultValue;
+
+    if (isInteger)
+    {
+      ta = parseInt(ta, 10);
+      tb = parseInt(tb, 10);
+      order = ta - tb;
+    }
+    else
+    {
+      if (ta < tb)
+        order = -1;
+      else if (ta > tb)
+        order = 1;
+      else
+        order = 0;
+    }
+
+    if (reverse)
+      return -order;
+    else
+      return order;
+  });
+}
+
+
+
+function GetSingleResource(type, uuid, callback)
+{
+  var resource = null;
+  $.ajax({
+    url: '/' + type + '/' + uuid,
+    dataType: 'json',
+    async: false,
+    success: function(s) {
+      callback(s);
+    }
+  });
+}
+
+
+function GetMultipleResources(type, uuids, callback)
+{
+  if (uuids == null)
+  {
+    $.ajax({
+      url: '/' + type,
+      dataType: 'json',
+      async: false,
+      success: function(s) {
+        uuids = s;
+      }
+    });
+  }
+
+  var resources = [];
+  var ajaxRequests = uuids.map(function(uuid) {
+    return $.ajax({
+      url: '/' + type + '/' + uuid,
+      dataType: 'json',
+      async: true,
+      success: function(s) {
+        resources.push(s);
+      }
+    });
+  });
+
+  // Wait for all the AJAX requests to end
+  $.when.apply($, ajaxRequests).then(function() {
+    callback(resources);
+  });
+}
+
+
+
+function CompleteFormatting(s, link, isReverse)
+{
+  if (link != null)
+  {
+    s = 'href="' + link + '">' + s + '</a>';
+    
+    if (isReverse)
+      s = 'data-direction="reverse" '+ s;
+
+    s = '<a ' + s;
+  }
+
+  if (isReverse)
+    return '<li data-icon="back">' + s + '</li>';
+  else
+    return '<li>' + s + '</li>';
+}
+
+
+function FormatMainDicomTags(tags, tagsToIgnore)
+{
+  var s = '';
+
+  for (var i in tags)
+  {
+    if (tagsToIgnore.indexOf(i) == -1)
+    {
+      var v = tags[i];
+
+      if (i == "PatientBirthDate" ||
+          i == "StudyDate" ||
+          i == "SeriesDate")
+      {
+        v = FormatDicomDate(v);
+      }
+      else if (i == "DicomStudyInstanceUID" ||
+               i == "DicomSeriesInstanceUID")
+      {
+        v = SplitLongUid(v);
+      }
+      
+
+      s += ('<p>{0}: <strong>{1}</strong></p>').format(i, v);
+    }
+  }
+
+  return s;
+}
+
+
+function FormatPatient(patient, link, isReverse)
+{
+  var s = ('<h3>{0}</h3>{1}' + 
+           '<span class="ui-li-count">{2}</span>'
+          ).format
+  (patient.MainDicomTags.PatientName,
+   FormatMainDicomTags(patient.MainDicomTags, [ 
+     "PatientName", 
+     "OtherPatientIDs" 
+   ]),
+   patient.Studies.length
+  );
+
+  return CompleteFormatting(s, link, isReverse);
+}
+
+
+
+function FormatStudy(study, link, isReverse)
+{
+  var s = ('<h3>{0}</h3>{1}' +
+           '<span class="ui-li-count">{2}</span>'
+           ).format
+  (study.MainDicomTags.StudyDescription,
+   FormatMainDicomTags(study.MainDicomTags, [
+     "StudyDescription", 
+     "StudyTime" 
+   ]),
+   study.Series.length
+  );
+
+  return CompleteFormatting(s, link, isReverse);
+}
+
+
+
+function FormatSeries(series, link, isReverse)
+{
+  var s = ('<h3>{0}</h3>{1}' +
+           '<span class="ui-li-count">{2}</span>').format
+  (series.MainDicomTags.SeriesDescription,
+   FormatMainDicomTags(series.MainDicomTags, [
+     "SeriesDescription", 
+     "SeriesTime", 
+     "Manufacturer",
+     "ImagesInAcquisition",
+     "SeriesDate"
+   ]),
+   series.Instances.length
+  );
+
+  return CompleteFormatting(s, link, isReverse);
+}
+
+
+function FormatInstance(instance, link, isReverse)
+{
+  var s = ('<h3>Instance {0}</h3>{1}').format
+  (instance.MainDicomTags.InstanceNumber,
+   FormatMainDicomTags(instance.MainDicomTags, [
+     "AcquisitionNumber", 
+     "InstanceNumber", 
+     "InstanceCreationDate", 
+     "InstanceCreationTime"
+   ])
+  );
+
+  return CompleteFormatting(s, link, isReverse);
+}
+
+
+
+
+$('#find-patients').live('pagebeforeshow', function() {
+  GetMultipleResources('patients', null, function(patients) {
+    var target = $('#all-patients');
+    $('li', target).remove();
+    
+    SortOnDicomTag(patients, 'PatientName', false, false);
+
+    for (var i = 0; i < patients.length; i++) {
+      var p = FormatPatient(patients[i], '#patient?uuid=' + patients[i].ID);
+      target.append(p);
+    }
+
+    target.listview('refresh');
+  });
+});
+
+
+
+$('#patient').live('pagebeforeshow', function() {
+  if ($.mobile.pageData) {
+    GetSingleResource('patients', $.mobile.pageData.uuid, function(patient) {
+      GetMultipleResources('studies', patient.Studies, function(studies) {
+        SortOnDicomTag(studies, 'StudyDate', false, true);
+
+        $('#patient-info li').remove();
+        $('#patient-info')
+          .append('<li data-role="list-divider">Patient</li>')
+          .append(FormatPatient(patient))
+          .listview('refresh');
+
+        var target = $('#list-studies');
+        $('li', target).remove();
+        
+        for (var i = 0; i < studies.length; i++) {
+          if (i == 0 || studies[i].MainDicomTags.StudyDate != studies[i - 1].MainDicomTags.StudyDate)
+          {
+            target.append('<li data-role="list-divider">{0}</li>'.format
+                          (FormatDicomDate(studies[i].MainDicomTags.StudyDate)));
+          }
+
+          target.append(FormatStudy(studies[i], '#study?uuid=' + studies[i].ID));
+        }
+
+        target.listview('refresh');
+      });
+    });
+  }
+});
+
+
+$('#study').live('pagebeforeshow', function() {
+  if ($.mobile.pageData) {
+    GetSingleResource('studies', $.mobile.pageData.uuid, function(study) {
+      GetSingleResource('patients', study.ParentPatient, function(patient) {
+        GetMultipleResources('series', study.Series, function(series) {
+          SortOnDicomTag(series, 'SeriesDate', false, true);
+
+          $('#study-info li').remove();
+          $('#study-info')
+            .append('<li data-role="list-divider">Patient</li>')
+            .append(FormatPatient(patient, '#patient?uuid=' + patient.ID, true))
+            .append('<li data-role="list-divider">Study</li>')
+            .append(FormatStudy(study))
+            .listview('refresh');
+
+          var target = $('#list-series');
+          $('li', target).remove();
+          for (var i = 0; i < series.length; i++) {
+            if (i == 0 || series[i].MainDicomTags.SeriesDate != series[i - 1].MainDicomTags.SeriesDate)
+            {
+              target.append('<li data-role="list-divider">{0}</li>'.format
+                            (FormatDicomDate(series[i].MainDicomTags.SeriesDate)));
+            }
+            target.append(FormatSeries(series[i], '#series?uuid=' + series[i].ID));
+          }
+          target.listview('refresh');
+        });
+      });  
+    });
+  }
+});
+  
+
+$('#series').live('pagebeforeshow', function() {
+  if ($.mobile.pageData) {
+    GetSingleResource('series', $.mobile.pageData.uuid, function(series) {
+      GetSingleResource('studies', series.ParentStudy, function(study) {
+        GetSingleResource('patients', study.ParentPatient, function(patient) {
+          GetMultipleResources('instances', series.Instances, function(instances) {
+            SortOnDicomTag(instances, 'InstanceNumber', true, false);
+
+            $('#series-info li').remove();
+            $('#series-info')
+              .append('<li data-role="list-divider">Patient</li>')
+              .append(FormatPatient(patient, '#patient?uuid=' + patient.ID, true))
+              .append('<li data-role="list-divider">Study</li>')
+              .append(FormatStudy(study, '#study?uuid=' + study.ID, true))
+              .append('<li data-role="list-divider">Series</li>')
+              .append(FormatSeries(series))
+              .listview('refresh');
+
+            var target = $('#list-instances');
+            $('li', target).remove();
+            for (var i = 0; i < instances.length; i++) {
+              target.append(FormatInstance(instances[i], '#instance?uuid=' + instances[i].ID));
+            }
+            target.listview('refresh');
+          });
+        });
+      });
+    });
+  }
+});
+
+
+
+function ConvertForTree(dicom)
+{
+  var result = [];
+
+  for (var i in dicom) {
+    if (dicom[i] != null) {
+      var label = i + '<span class="tag-name"> (<i>' + dicom[i]["Name"] + '</i>)</span>: ';
+
+      if (dicom[i]["Type"] == 'String')
+      {
+        result.push({
+          label: label + '<strong>' + dicom[i]["Value"] + '</strong>',
+          children: []
+        });
+      }
+      else if (dicom[i]["Type"] == 'TooLong')
+      {
+        result.push({
+          label: label + '<i>Too long</i>',
+          children: []
+        });
+      }
+      else if (dicom[i]["Type"] == 'Null')
+      {
+        result.push({
+          label: label + '<i>Null</i>',
+          children: []
+        });
+      }
+      else if (dicom[i]["Type"] == 'Sequence')
+      {
+        var c = [];
+        for (var j = 0; j < dicom[i]["Value"].length; j++) {
+          c.push({
+            label: 'Item ' + j,
+            children: ConvertForTree(dicom[i]["Value"][j])
+          });
+        }
+
+        result.push({
+          label: label + '[]',
+          children: c
+        });
+      }
+    }
+  }
+
+  return result;
+}
+
+
+$('#instance').live('pagebeforeshow', function() {
+  if ($.mobile.pageData) {
+    GetSingleResource('instances', $.mobile.pageData.uuid, function(instance) {
+      GetSingleResource('series', instance.ParentSeries, function(series) {
+        GetSingleResource('studies', series.ParentStudy, function(study) {
+          GetSingleResource('patients', study.ParentPatient, function(patient) {
+            
+            $('#instance-info li').remove();
+            $('#instance-info')
+              .append('<li data-role="list-divider">Patient</li>')
+              .append(FormatPatient(patient, '#patient?uuid=' + patient.ID, true))
+              .append('<li data-role="list-divider">Study</li>')
+              .append(FormatStudy(study, '#study?uuid=' + study.ID, true))
+              .append('<li data-role="list-divider">Series</li>')
+              .append(FormatSeries(series, '#series?uuid=' + series.ID, true))
+              .append('<li data-role="list-divider">Instance</li>')
+              .append(FormatInstance(instance))
+              .listview('refresh');
+
+            $.ajax({
+              url: '/instances/' + instance.ID + '/tags',
+              dataType: 'json',
+              success: function(s) {
+                $('#dicom-tree').tree('loadData', ConvertForTree(s));
+              }
+            });
+
+          });
+        });
+      });
+    });
+  }
+});
+
+
+
+function DeleteResource(path)
+{
+  $.ajax({
+    url: path,
+    type: 'DELETE',
+    dataType: 'json',
+    async: false,
+    success: function(s) {
+      var ancestor = s.RemainingAncestor;
+      if (ancestor == null)
+        $.mobile.changePage('#find-patients');
+      else
+        $.mobile.changePage('#' + ancestor.Type + '?uuid=' + ancestor.ID);
+    }
+  });
+}
+
+
+
+function OpenDeleteResourceDialog(path, title)
+{
+  $(document).simpledialog2({ 
+    // http://dev.jtsage.com/jQM-SimpleDialog/demos2/
+    // http://dev.jtsage.com/jQM-SimpleDialog/demos2/options.html
+    mode: 'button',
+    animate: false,
+    headerText: title,
+    headerClose: true,
+    width: '500px',
+    buttons : {
+      'OK': {
+        click: function () { 
+          DeleteResource(path);
+        },
+        icon: "delete",
+        theme: "c"
+      },
+      'Cancel': {
+        click: function () { 
+        }
+      }
+    }
+  });
+}
+
+
+
+$('#instance-delete').live('click', function() {
+  OpenDeleteResourceDialog('/instances/' + $.mobile.pageData.uuid,
+                           'Delete this instance?');
+});
+
+$('#study-delete').live('click', function() {
+  OpenDeleteResourceDialog('/studies/' + $.mobile.pageData.uuid,
+                           'Delete this study?');
+});
+
+$('#series-delete').live('click', function() {
+  OpenDeleteResourceDialog('/series/' + $.mobile.pageData.uuid,
+                           'Delete this series?');
+});
+
+$('#patient-delete').live('click', function() {
+  OpenDeleteResourceDialog('/patients/' + $.mobile.pageData.uuid,
+                           'Delete this patient?');
+});
+
+
+$('#instance-download-dicom').live('click', function(e) {
+  // http://stackoverflow.com/a/1296101
+  e.preventDefault();  //stop the browser from following
+  window.location.href = '/instances/' + $.mobile.pageData.uuid + '/file';
+});
+
+$('#instance-download-json').live('click', function(e) {
+  // http://stackoverflow.com/a/1296101
+  e.preventDefault();  //stop the browser from following
+  window.location.href = '/instances/' + $.mobile.pageData.uuid + '/tags';
+});
+
+
+$('#instance-preview').live('click', function(e) {
+  jQuery.slimbox('/instances/' + $.mobile.pageData.uuid + '/preview', '', {
+                   overlayFadeDuration : 1,
+                   resizeDuration : 1,
+                   imageFadeDuration : 1
+                 });
+});
+
+$('#series-preview').live('click', function(e) {
+  if ($.mobile.pageData) {
+    GetSingleResource('series', $.mobile.pageData.uuid, function(series) {
+      GetMultipleResources('instances', series.Instances, function(instances) {
+        SortOnDicomTag(instances, 'InstanceNumber', true, false);
+
+        var images = [];
+        for (var i = 0; i < instances.length; i++) {
+          images.push([ '/instances/' + instances[i].ID + '/preview',
+                        '{0}/{1}'.format(i + 1, instances.length) ])
+        }
+
+        jQuery.slimbox(images, 0, {
+          overlayFadeDuration : 1,
+          resizeDuration : 1,
+          imageFadeDuration : 1,
+          loop : true
+        });
+      })
+    });
+  }
+});
+
+
+
+
+
+
+function ChooseDicomModality(callback)
+{
+  $.ajax({
+    url: '/modalities',
+    type: 'GET',
+    dataType: 'json',
+    async: false,
+    success: function(modalities) {
+      var clickedModality = '';
+      var items = $('<ul>')
+        .attr('data-role', 'listview');
+
+      for (var i = 0; i < modalities.length; i++) {
+        var modality = modalities[i];
+        var item = $('<li>')
+          .html('<a href="#" rel="close">' + modality + '</a>')
+          .attr('modality', modality)
+          .click(function() { 
+            clickedModality = $(this).attr('modality');
+          });
+        items.append(item);
+      }
+
+      $('#dialog').simpledialog2({
+        mode: 'blank',
+        animate: false,
+        headerText: 'DICOM modality',
+        headerClose: true,
+        width: '100%',
+        blankContent: items,
+        callbackClose: function() {
+          var timer;
+          function WaitForDialogToClose() {
+            if (!$('#dialog').is(':visible')) {
+              clearInterval(timer);
+              callback(clickedModality);
+            }
+          }
+          timer = setInterval(WaitForDialogToClose, 100);
+        }
+      });
+    }
+  });
+}
+
+
+$('#instance-store,#series-store').live('click', function(e) {
+  ChooseDicomModality(function(modality) {
+    if (modality != '') {
+      $.ajax({
+        url: '/modalities/' + modality + '/store',
+        type: 'POST',
+        dataType: 'text',
+        data: $.mobile.pageData.uuid,
+        async: true,  // Necessary to block UI
+        beforeSend: function() {
+          $.blockUI({ message: $('#loading') });
+        },
+        complete: function(s) {
+          $.unblockUI();
+        },
+        success: function(s) {
+          console.log('done !');
+        },
+        error: function() {
+          alert('Error during C-Store');
+        }
+      });
+      
+    }
+  });
+});
+
+
+$('#show-tag-name').live('change', function(e) {
+  var checked = e.currentTarget.checked;
+  if (checked)
+    $('.tag-name').show();
+  else
+    $('.tag-name').hide();
+});