annotate OrthancServer/Sources/ServerJobs/ArchiveJob.cpp @ 5853:4d932683049d get-scu tip

very first implementation of C-Get SCU
author Alain Mazy <am@orthanc.team>
date Tue, 29 Oct 2024 17:25:49 +0100
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children 1980354c8113
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU General Public License as
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11 * published by the Free Software Foundation, either version 3 of the
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12 * License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "../PrecompiledHeadersServer.h"
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25 #include "ArchiveJob.h"
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26
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27 #include "../../../OrthancFramework/Sources/Cache/SharedArchive.h"
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28 #include "../../../OrthancFramework/Sources/Compression/HierarchicalZipWriter.h"
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29 #include "../../../OrthancFramework/Sources/DicomParsing/DicomDirWriter.h"
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30 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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31 #include "../../../OrthancFramework/Sources/Logging.h"
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32 #include "../../../OrthancFramework/Sources/OrthancException.h"
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33 #include "../../../OrthancFramework/Sources/MultiThreading/Semaphore.h"
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34 #include "../OrthancConfiguration.h"
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35 #include "../ServerContext.h"
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36
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37 #include <stdio.h>
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38 #include <boost/range/algorithm/count.hpp>
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39
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40 #if defined(_MSC_VER)
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41 #define snprintf _snprintf
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42 #endif
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43
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44 static const uint64_t MEGA_BYTES = 1024 * 1024;
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45 static const uint64_t GIGA_BYTES = 1024 * 1024 * 1024;
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47 static const char* const MEDIA_IMAGES_FOLDER = "IMAGES";
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48 static const char* const KEY_DESCRIPTION = "Description";
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49 static const char* const KEY_INSTANCES_COUNT = "InstancesCount";
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50 static const char* const KEY_UNCOMPRESSED_SIZE_MB = "UncompressedSizeMB";
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51 static const char* const KEY_ARCHIVE_SIZE_MB = "ArchiveSizeMB";
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52 static const char* const KEY_UNCOMPRESSED_SIZE = "UncompressedSize";
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53 static const char* const KEY_ARCHIVE_SIZE = "ArchiveSize";
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54 static const char* const KEY_TRANSCODE = "Transcode";
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55
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56
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57 namespace Orthanc
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58 {
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59 static bool IsZip64Required(uint64_t uncompressedSize,
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60 unsigned int countInstances)
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61 {
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62 static const uint64_t SAFETY_MARGIN = 64 * MEGA_BYTES; // Should be large enough to hold DICOMDIR
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63 static const unsigned int FILES_MARGIN = 10;
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64
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65 /**
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66 * Determine whether ZIP64 is required. Original ZIP format can
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67 * store up to 2GB of data (some implementation supporting up to
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68 * 4GB of data), and up to 65535 files.
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69 * https://en.wikipedia.org/wiki/Zip_(file_format)#ZIP64
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70 **/
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71
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72 const bool isZip64 = (uncompressedSize >= 2 * GIGA_BYTES - SAFETY_MARGIN ||
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73 countInstances >= 65535 - FILES_MARGIN);
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74
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75 LOG(INFO) << "Creating a ZIP file with " << countInstances << " files of size "
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76 << Toolbox::GetHumanFileSize(uncompressedSize) << " using the "
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77 << (isZip64 ? "ZIP64" : "ZIP32") << " file format";
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78
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79 return isZip64;
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80 }
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81
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82
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83 class ArchiveJob::InstanceLoader : public boost::noncopyable
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84 {
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85 protected:
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86 ServerContext& context_;
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87 bool transcode_;
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88 DicomTransferSyntax transferSyntax_;
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89 public:
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90 explicit InstanceLoader(ServerContext& context, bool transcode, DicomTransferSyntax transferSyntax)
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91 : context_(context),
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92 transcode_(transcode),
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93 transferSyntax_(transferSyntax)
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94 {
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95 }
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96
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97 virtual ~InstanceLoader()
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98 {
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99 }
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100
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101 virtual void PrepareDicom(const std::string& instanceId)
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102 {
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103 }
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104
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105 bool TranscodeDicom(std::string& transcodedBuffer, const std::string& sourceBuffer, const std::string& instanceId)
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106 {
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107 if (transcode_)
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108 {
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109 std::set<DicomTransferSyntax> syntaxes;
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110 syntaxes.insert(transferSyntax_);
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111
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112 IDicomTranscoder::DicomImage source, transcoded;
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113 source.SetExternalBuffer(sourceBuffer);
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114
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115 if (context_.Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */))
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116 {
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117 transcodedBuffer.assign(reinterpret_cast<const char*>(transcoded.GetBufferData()), transcoded.GetBufferSize());
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118 return true;
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119 }
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120 else
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121 {
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122 LOG(INFO) << "Cannot transcode instance " << instanceId
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123 << " to transfer syntax: " << GetTransferSyntaxUid(transferSyntax_);
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124 }
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125 }
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126
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127 return false;
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128 }
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129
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130 virtual void GetDicom(std::string& dicom, const std::string& instanceId) = 0;
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131
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132 virtual void Clear()
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133 {
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134 }
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135 };
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136
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137 class ArchiveJob::SynchronousInstanceLoader : public ArchiveJob::InstanceLoader
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138 {
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139 public:
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140 explicit SynchronousInstanceLoader(ServerContext& context, bool transcode, DicomTransferSyntax transferSyntax)
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141 : InstanceLoader(context, transcode, transferSyntax)
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142 {
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143 }
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144
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145 virtual void GetDicom(std::string& dicom, const std::string& instanceId) ORTHANC_OVERRIDE
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146 {
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147 context_.ReadDicom(dicom, instanceId);
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148
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149 if (transcode_)
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150 {
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151 std::string transcoded;
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152 if (TranscodeDicom(transcoded, dicom, instanceId))
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153 {
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154 dicom.swap(transcoded);
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155 }
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156 }
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157
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158 }
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159 };
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160
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161 class InstanceId : public Orthanc::IDynamicObject
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162 {
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163 private:
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164 std::string id_;
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165
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166 public:
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167 explicit InstanceId(const std::string& id) : id_(id)
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168 {
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169 }
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170
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171 virtual ~InstanceId() ORTHANC_OVERRIDE
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172 {
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173 }
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174
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175 std::string GetId() const {return id_;};
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176 };
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177
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178 class ArchiveJob::ThreadedInstanceLoader : public ArchiveJob::InstanceLoader
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179 {
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180 Semaphore availableInstancesSemaphore_;
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181 Semaphore bufferedInstancesSemaphore_;
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182 std::map<std::string, boost::shared_ptr<std::string> > availableInstances_;
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183 boost::mutex availableInstancesMutex_;
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184 SharedMessageQueue instancesToPreload_;
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185 std::vector<boost::thread*> threads_;
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186
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187
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188 public:
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189 ThreadedInstanceLoader(ServerContext& context, size_t threadCount, bool transcode, DicomTransferSyntax transferSyntax)
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190 : InstanceLoader(context, transcode, transferSyntax),
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191 availableInstancesSemaphore_(0),
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192 bufferedInstancesSemaphore_(3*threadCount)
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193 {
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194 for (size_t i = 0; i < threadCount; i++)
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195 {
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196 threads_.push_back(new boost::thread(PreloaderWorkerThread, this));
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197 }
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198 }
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199
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200 virtual ~ThreadedInstanceLoader()
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201 {
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202 Clear();
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203 }
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204
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205 virtual void Clear() ORTHANC_OVERRIDE
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206 {
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207 for (size_t i = 0; i < threads_.size(); i++)
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208 {
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209 instancesToPreload_.Enqueue(NULL);
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210 }
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211
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212 for (size_t i = 0; i < threads_.size(); i++)
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213 {
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214 if (threads_[i]->joinable())
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215 {
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216 threads_[i]->join();
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217 }
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218 delete threads_[i];
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219 }
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220
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221 threads_.clear();
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222 availableInstances_.clear();
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223 }
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224
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225 static void PreloaderWorkerThread(ThreadedInstanceLoader* that)
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226 {
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227 static uint16_t threadCounter = 0;
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228 Logging::SetCurrentThreadName(std::string("ARCH-LOAD-") + boost::lexical_cast<std::string>(threadCounter++));
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229
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230 while (true)
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231 {
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232 std::unique_ptr<InstanceId> instanceId(dynamic_cast<InstanceId*>(that->instancesToPreload_.Dequeue(0)));
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233 if (instanceId.get() == NULL) // that's the signal to exit the thread
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234 {
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235 return;
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236 }
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237
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238 // wait for the consumers (zip writer), no need to accumulate instances in memory if loaders are faster than writers
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239 that->bufferedInstancesSemaphore_.Acquire();
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240
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241 try
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242 {
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243 boost::shared_ptr<std::string> dicomContent(new std::string());
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244 that->context_.ReadDicom(*dicomContent, instanceId->GetId());
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245
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246 if (that->transcode_)
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247 {
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248 boost::shared_ptr<std::string> transcodedDicom(new std::string());
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249 if (that->TranscodeDicom(*transcodedDicom, *dicomContent, instanceId->GetId()))
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250 {
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251 dicomContent = transcodedDicom;
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252 }
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253 }
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254
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255 {
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256 boost::mutex::scoped_lock lock(that->availableInstancesMutex_);
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257 that->availableInstances_[instanceId->GetId()] = dicomContent;
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258 }
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259
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260 that->availableInstancesSemaphore_.Release();
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261 }
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262 catch (OrthancException& e)
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263 {
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264 boost::mutex::scoped_lock lock(that->availableInstancesMutex_);
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265 // store a NULL result to notify that we could not read the instance
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266 that->availableInstances_[instanceId->GetId()] = boost::shared_ptr<std::string>();
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267 that->availableInstancesSemaphore_.Release();
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268 }
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269 }
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270 }
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271
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272 virtual void PrepareDicom(const std::string& instanceId) ORTHANC_OVERRIDE
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273 {
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274 instancesToPreload_.Enqueue(new InstanceId(instanceId));
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275 }
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276
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277 virtual void GetDicom(std::string& dicom, const std::string& instanceId) ORTHANC_OVERRIDE
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278 {
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279 while (true)
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280 {
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281 // wait for an instance to be available but this might not be the one we are waiting for !
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282 availableInstancesSemaphore_.Acquire();
5302
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283 bufferedInstancesSemaphore_.Release(); // unlock the "flow" of loaders
4797
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284
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285 boost::shared_ptr<std::string> dicomContent;
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286 {
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287 if (availableInstances_.find(instanceId) != availableInstances_.end())
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288 {
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289 // this is the instance we were waiting for
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290 dicomContent = availableInstances_[instanceId];
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291 availableInstances_.erase(instanceId);
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292
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293 if (dicomContent.get() == NULL) // there has been an error while reading the file
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294 {
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295 throw OrthancException(ErrorCode_InexistentItem);
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296 }
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297 dicom.swap(*dicomContent);
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298
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299 if (availableInstances_.size() > 0)
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300 {
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301 // we have just read the instance we were waiting for but there are still other instances available ->
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302 // make sure the next GetDicom call does not wait !
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303 availableInstancesSemaphore_.Release();
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304 }
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305 return;
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306 }
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307 // we have not found the expected instance, simply wait for the next loader thread to signal the semaphore when
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308 // a new instance is available
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309 }
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310 }
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311 }
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312 };
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313
5401
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314 // This enum defines specific resource types to be used when exporting the archive.
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315 // It defines if we should use the PatientInfo from the Patient or from the Study.
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316 enum ArchiveResourceType
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317 {
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318 ArchiveResourceType_Patient = 0,
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319 ArchiveResourceType_PatientInfoFromStudy = 1,
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320 ArchiveResourceType_Study = 2,
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321 ArchiveResourceType_Series = 3,
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322 ArchiveResourceType_Instance = 4
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323 };
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324
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325 ResourceType GetResourceIdType(ArchiveResourceType type)
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326 {
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327 switch (type)
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328 {
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329 case ArchiveResourceType_Patient:
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330 return ResourceType_Patient;
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331 case ArchiveResourceType_PatientInfoFromStudy: // get the Patient tags from the Study id
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332 return ResourceType_Study;
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333 case ArchiveResourceType_Study:
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334 return ResourceType_Study;
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335 case ArchiveResourceType_Series:
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336 return ResourceType_Series;
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337 case ArchiveResourceType_Instance:
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338 return ResourceType_Instance;
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339 default:
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340 throw OrthancException(ErrorCode_ParameterOutOfRange);
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341 }
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342 }
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diff changeset
343
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344 ResourceType GetResourceLevel(ArchiveResourceType type)
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345 {
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diff changeset
346 switch (type)
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347 {
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348 case ArchiveResourceType_Patient:
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349 return ResourceType_Patient;
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350 case ArchiveResourceType_PatientInfoFromStudy: // this is actually the same level as the Patient
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351 return ResourceType_Patient;
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diff changeset
352 case ArchiveResourceType_Study:
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353 return ResourceType_Study;
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diff changeset
354 case ArchiveResourceType_Series:
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355 return ResourceType_Series;
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diff changeset
356 case ArchiveResourceType_Instance:
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diff changeset
357 return ResourceType_Instance;
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diff changeset
358 default:
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diff changeset
359 throw OrthancException(ErrorCode_ParameterOutOfRange);
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diff changeset
360 }
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diff changeset
361 }
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Alain Mazy <am@osimis.io>
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diff changeset
362
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Alain Mazy <am@osimis.io>
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diff changeset
363 ArchiveResourceType GetArchiveResourceType(ResourceType type)
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Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
364 {
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Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
365 switch (type)
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
366 {
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Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
367 case ResourceType_Patient:
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Alain Mazy <am@osimis.io>
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diff changeset
368 return ArchiveResourceType_Patient;
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Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
369 case ArchiveResourceType_Study:
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diff changeset
370 return ArchiveResourceType_PatientInfoFromStudy;
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Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
371 case ResourceType_Series:
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Alain Mazy <am@osimis.io>
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diff changeset
372 return ArchiveResourceType_Series;
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Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
373 case ResourceType_Instance:
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diff changeset
374 return ArchiveResourceType_Instance;
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Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
375 default:
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Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
376 throw OrthancException(ErrorCode_ParameterOutOfRange);
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diff changeset
377 }
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
378 }
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
379
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
380 ArchiveResourceType GetChildResourceType(ArchiveResourceType type)
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Alain Mazy <am@osimis.io>
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diff changeset
381 {
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
382 switch (type)
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
383 {
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
384 case ArchiveResourceType_Patient:
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
385 case ArchiveResourceType_PatientInfoFromStudy:
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Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
386 return ArchiveResourceType_Study;
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
387
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
388 case ArchiveResourceType_Study:
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
389 return ArchiveResourceType_Series;
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
390
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
391 case ArchiveResourceType_Series:
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
392 return ArchiveResourceType_Instance;
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
393
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
394 default:
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
395 throw OrthancException(ErrorCode_ParameterOutOfRange);
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
396 }
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
397 }
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
398
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
399
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400 class ArchiveJob::ResourceIdentifiers : public boost::noncopyable
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
402 private:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 ResourceType level_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404 std::string patient_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 std::string study_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 std::string series_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407 std::string instance_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 static void GoToParent(ServerIndex& index,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410 std::string& current)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 std::string tmp;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 if (index.LookupParent(tmp, current))
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 current = tmp;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420 throw OrthancException(ErrorCode_UnknownResource);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 public:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426 ResourceIdentifiers(ServerIndex& index,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427 const std::string& publicId)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 if (!index.LookupResourceType(level_, publicId))
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 throw OrthancException(ErrorCode_UnknownResource);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434 std::string current = publicId;;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
435 switch (level_) // Do not add "break" below!
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
436 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437 case ResourceType_Instance:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438 instance_ = current;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
439 GoToParent(index, current);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
441 case ResourceType_Series:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442 series_ = current;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
443 GoToParent(index, current);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
444
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445 case ResourceType_Study:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 study_ = current;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447 GoToParent(index, current);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 case ResourceType_Patient:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 patient_ = current;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451 break;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 default:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 throw OrthancException(ErrorCode_InternalError);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458 ResourceType GetLevel() const
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 return level_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 const std::string& GetIdentifier(ResourceType level) const
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 // Some sanity check to ensure enumerations are not altered
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 assert(ResourceType_Patient < ResourceType_Study);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 assert(ResourceType_Study < ResourceType_Series);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 assert(ResourceType_Series < ResourceType_Instance);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 if (level > level_)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472 throw OrthancException(ErrorCode_InternalError);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475 switch (level)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 case ResourceType_Patient:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478 return patient_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 case ResourceType_Study:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 return study_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 case ResourceType_Series:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 return series_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 case ResourceType_Instance:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 return instance_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 default:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 throw OrthancException(ErrorCode_InternalError);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 };
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496 class ArchiveJob::IArchiveVisitor : public boost::noncopyable
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 public:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 virtual ~IArchiveVisitor()
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
500 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
503 virtual void Open(ArchiveResourceType level,
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 const std::string& publicId) = 0;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 virtual void Close() = 0;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 virtual void AddInstance(const std::string& instanceId,
4510
a3635a01a945 fix signature of virtual method
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
509 uint64_t uncompressedSize) = 0;
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 };
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513 class ArchiveJob::ArchiveIndex : public boost::noncopyable
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
514 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515 private:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
516 struct Instance
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
517 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518 std::string id_;
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
519 uint64_t uncompressedSize_;
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521 Instance(const std::string& id,
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
522 uint64_t uncompressedSize) :
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
523 id_(id),
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
524 uncompressedSize_(uncompressedSize)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
526 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
527 };
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
528
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
529 // A "NULL" value for ArchiveIndex indicates a non-expanded node
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
530 typedef std::map<std::string, ArchiveIndex*> Resources;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
531
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
532 ArchiveResourceType level_;
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
533 Resources resources_; // Only at patient/study/series level
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
534 std::list<Instance> instances_; // Only at instance level
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
535
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
536
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
537 void AddResourceToExpand(ServerIndex& index,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
538 const std::string& id)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
539 {
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
540 if (level_ == ArchiveResourceType_Instance)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
541 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
542 FileInfo tmp;
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4591
diff changeset
543 int64_t revision; // ignored
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4591
diff changeset
544 if (index.LookupAttachment(tmp, revision, id, FileContentType_Dicom))
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
545 {
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
546 instances_.push_back(Instance(id, tmp.GetUncompressedSize()));
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
547 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
548 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
549 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
550 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551 resources_[id] = NULL;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
552 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
553 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
554
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
556 public:
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
557 explicit ArchiveIndex(ArchiveResourceType level) :
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
558 level_(level)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
559 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
560 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
561
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
562 ~ArchiveIndex()
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
563 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564 for (Resources::iterator it = resources_.begin();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
565 it != resources_.end(); ++it)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
566 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567 delete it->second;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
568 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
569 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
570
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
571
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572 void Add(ServerIndex& index,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573 const ResourceIdentifiers& resource)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574 {
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
575 const std::string& id = resource.GetIdentifier(GetResourceIdType(level_));
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
576 Resources::iterator previous = resources_.find(id);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
577
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
578 if (level_ == ArchiveResourceType_Instance)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
579 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
580 AddResourceToExpand(index, id);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
581 }
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
582 else if (resource.GetLevel() == GetResourceLevel(level_))
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
583 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
584 // Mark this resource for further expansion
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
585 if (previous != resources_.end())
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
586 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
587 delete previous->second;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
588 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
589
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
590 resources_[id] = NULL;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
591 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
592 else if (previous == resources_.end())
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
593 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
594 // This is the first time we meet this resource
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
595 std::unique_ptr<ArchiveIndex> child(new ArchiveIndex(GetChildResourceType(level_)));
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596 child->Add(index, resource);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
597 resources_[id] = child.release();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
598 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599 else if (previous->second != NULL)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
601 previous->second->Add(index, resource);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605 // Nothing to do: This item is marked for further expansion
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
606 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
607 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
608
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
609
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610 void Expand(ServerIndex& index)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
611 {
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
612 if (level_ == ArchiveResourceType_Instance)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
613 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
614 // Expanding an instance node makes no sense
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
615 return;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
617
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
618 for (Resources::iterator it = resources_.begin();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
619 it != resources_.end(); ++it)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
620 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
621 if (it->second == NULL)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
622 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
623 // This is resource is marked for expansion
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
624 std::list<std::string> children;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
625 index.GetChildren(children, it->first);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
626
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
627 std::unique_ptr<ArchiveIndex> child(new ArchiveIndex(GetChildResourceType(level_)));
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
628
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
629 for (std::list<std::string>::const_iterator
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
630 it2 = children.begin(); it2 != children.end(); ++it2)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
631 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
632 child->AddResourceToExpand(index, *it2);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
633 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
634
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
635 it->second = child.release();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
636 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
637
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
638 assert(it->second != NULL);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
639 it->second->Expand(index);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
640 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
641 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
642
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
643
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
644 void Apply(IArchiveVisitor& visitor) const
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
645 {
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
646 if (level_ == ArchiveResourceType_Instance)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
647 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
648 for (std::list<Instance>::const_iterator
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
649 it = instances_.begin(); it != instances_.end(); ++it)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
650 {
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
651 visitor.AddInstance(it->id_, it->uncompressedSize_);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
652 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
653 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
654 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
655 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
656 for (Resources::const_iterator it = resources_.begin();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
657 it != resources_.end(); ++it)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
658 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
659 assert(it->second != NULL); // There must have been a call to "Expand()"
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
660 visitor.Open(level_, it->first);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
661 it->second->Apply(visitor);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
662 visitor.Close();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
663 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
664 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
665 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
666 };
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
667
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
668
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
669
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
670 class ArchiveJob::ZipCommands : public boost::noncopyable
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
671 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
672 private:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
673 enum Type
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
674 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
675 Type_OpenDirectory,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
676 Type_CloseDirectory,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
677 Type_WriteInstance
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
678 };
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
679
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
680 class Command : public boost::noncopyable
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
681 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
682 private:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
683 Type type_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
684 std::string filename_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
685 std::string instanceId_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
686
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
687 public:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
688 explicit Command(Type type) :
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
689 type_(type)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
690 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
691 assert(type_ == Type_CloseDirectory);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
692 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
693
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
694 Command(Type type,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
695 const std::string& filename) :
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
696 type_(type),
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
697 filename_(filename)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
698 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
699 assert(type_ == Type_OpenDirectory);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
700 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
701
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
702 Command(Type type,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
703 const std::string& filename,
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
704 const std::string& instanceId) :
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
705 type_(type),
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
706 filename_(filename),
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
707 instanceId_(instanceId)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
708 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
709 assert(type_ == Type_WriteInstance);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
710 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
711
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
712 void Apply(HierarchicalZipWriter& writer,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
713 ServerContext& context,
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
714 InstanceLoader& instanceLoader,
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
715 DicomDirWriter* dicomDir,
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
716 const std::string& dicomDirFolder,
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
717 bool transcode,
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
718 DicomTransferSyntax transferSyntax) const
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
719 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
720 switch (type_)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
721 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
722 case Type_OpenDirectory:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
723 writer.OpenDirectory(filename_.c_str());
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
724 break;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
725
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
726 case Type_CloseDirectory:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
727 writer.CloseDirectory();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
728 break;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
729
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
730 case Type_WriteInstance:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
731 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
732 std::string content;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
733
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
734 try
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
735 {
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
736 instanceLoader.GetDicom(content, instanceId_);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
737 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
738 catch (OrthancException& e)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
739 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
740 LOG(WARNING) << "An instance was removed after the job was issued: " << instanceId_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
741 return;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
742 }
2636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2632
diff changeset
743
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
744 writer.OpenFile(filename_.c_str());
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
745
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
746 std::unique_ptr<ParsedDicomFile> parsed;
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
747
5109
027366cae766 cppcheck
Alain Mazy <am@osimis.io>
parents: 5108
diff changeset
748 writer.Write(content);
027366cae766 cppcheck
Alain Mazy <am@osimis.io>
parents: 5108
diff changeset
749
027366cae766 cppcheck
Alain Mazy <am@osimis.io>
parents: 5108
diff changeset
750 if (dicomDir != NULL)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
751 {
5109
027366cae766 cppcheck
Alain Mazy <am@osimis.io>
parents: 5108
diff changeset
752 if (parsed.get() == NULL)
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
753 {
5109
027366cae766 cppcheck
Alain Mazy <am@osimis.io>
parents: 5108
diff changeset
754 parsed.reset(new ParsedDicomFile(content));
027366cae766 cppcheck
Alain Mazy <am@osimis.io>
parents: 5108
diff changeset
755 }
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
756
5109
027366cae766 cppcheck
Alain Mazy <am@osimis.io>
parents: 5108
diff changeset
757 dicomDir->Add(dicomDirFolder, filename_, *parsed);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
758 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
759
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
760 break;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
761 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
762
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
763 default:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
764 throw OrthancException(ErrorCode_InternalError);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
765 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
766 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
767 };
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
768
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
769 std::deque<Command*> commands_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
770 uint64_t uncompressedSize_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
771 unsigned int instancesCount_;
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
772 InstanceLoader& instanceLoader_;
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
773
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
774
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
775 void ApplyInternal(HierarchicalZipWriter& writer,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
776 ServerContext& context,
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
777 InstanceLoader& instanceLoader,
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
778 size_t index,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
779 DicomDirWriter* dicomDir,
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
780 const std::string& dicomDirFolder,
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
781 bool transcode,
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
782 DicomTransferSyntax transferSyntax) const
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
783 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
784 if (index >= commands_.size())
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
785 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
786 throw OrthancException(ErrorCode_ParameterOutOfRange);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
787 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
788
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
789 commands_[index]->Apply(writer, context, instanceLoader, dicomDir, dicomDirFolder, transcode, transferSyntax);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
790 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
791
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
792 public:
4815
cd6dc99e0470 cppcheck
Alain Mazy <am@osimis.io>
parents: 4810
diff changeset
793 explicit ZipCommands(InstanceLoader& instanceLoader) :
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
794 uncompressedSize_(0),
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
795 instancesCount_(0),
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
796 instanceLoader_(instanceLoader)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
797 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
798 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
799
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
800 ~ZipCommands()
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
801 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
802 for (std::deque<Command*>::iterator it = commands_.begin();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
803 it != commands_.end(); ++it)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
804 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
805 assert(*it != NULL);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
806 delete *it;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
807 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
808 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
809
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
810 size_t GetSize() const
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
811 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
812 return commands_.size();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
813 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
814
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
815 unsigned int GetInstancesCount() const
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
816 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
817 return instancesCount_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
818 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
819
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
820 uint64_t GetUncompressedSize() const
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
821 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
822 return uncompressedSize_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
823 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
824
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
825 // "media" flavor (with DICOMDIR)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
826 void Apply(HierarchicalZipWriter& writer,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
827 ServerContext& context,
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
828 InstanceLoader& instanceLoader,
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
829 size_t index,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
830 DicomDirWriter& dicomDir,
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
831 const std::string& dicomDirFolder,
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
832 bool transcode,
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
833 DicomTransferSyntax transferSyntax) const
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
834 {
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
835 ApplyInternal(writer, context, instanceLoader, index, &dicomDir, dicomDirFolder, transcode, transferSyntax);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
836 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
837
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
838 // "archive" flavor (without DICOMDIR)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
839 void Apply(HierarchicalZipWriter& writer,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
840 ServerContext& context,
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
841 InstanceLoader& instanceLoader,
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
842 size_t index,
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
843 bool transcode,
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
844 DicomTransferSyntax transferSyntax) const
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
845 {
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
846 ApplyInternal(writer, context, instanceLoader, index, NULL, "", transcode, transferSyntax);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
847 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
848
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
849 void AddOpenDirectory(const std::string& filename)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
850 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
851 commands_.push_back(new Command(Type_OpenDirectory, filename));
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
852 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
853
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
854 void AddCloseDirectory()
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
855 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
856 commands_.push_back(new Command(Type_CloseDirectory));
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
857 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
858
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
859 void AddWriteInstance(const std::string& filename,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
860 const std::string& instanceId,
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
861 uint64_t uncompressedSize)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
862 {
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
863 instanceLoader_.PrepareDicom(instanceId);
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
864 commands_.push_back(new Command(Type_WriteInstance, filename, instanceId));
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
865 instancesCount_ ++;
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
866 uncompressedSize_ += uncompressedSize;
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
867 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
868
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
869 bool IsZip64() const
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
870 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
871 return IsZip64Required(GetUncompressedSize(), GetInstancesCount());
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
872 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
873 };
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
874
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
875
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
876
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
877 class ArchiveJob::ArchiveIndexVisitor : public IArchiveVisitor
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
878 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
879 private:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
880 ZipCommands& commands_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
881 ServerContext& context_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
882 char instanceFormat_[24];
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
883 unsigned int counter_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
884
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
885 static std::string GetTag(const DicomMap& tags,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
886 const DicomTag& tag)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
887 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
888 const DicomValue* v = tags.TestAndGetValue(tag);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
889 if (v != NULL &&
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
890 !v->IsBinary() &&
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
891 !v->IsNull())
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
892 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
893 return v->GetContent();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
894 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
895 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
896 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
897 return "";
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
898 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
899 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
900
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
901 public:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
902 ArchiveIndexVisitor(ZipCommands& commands,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
903 ServerContext& context) :
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
904 commands_(commands),
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
905 context_(context),
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
906 counter_(0)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
907 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
908 if (commands.GetSize() != 0)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
909 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
910 throw OrthancException(ErrorCode_BadSequenceOfCalls);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
911 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
912
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
913 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%%08d.dcm");
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
914 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
915
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
916 virtual void Open(ArchiveResourceType level,
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
917 const std::string& publicId) ORTHANC_OVERRIDE
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
918 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
919 std::string path;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
920
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
921 DicomMap tags;
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
922 ResourceType resourceIdLevel = GetResourceIdType(level);
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
923 ResourceType interestLevel = (level == ArchiveResourceType_PatientInfoFromStudy ? ResourceType_Patient : resourceIdLevel);
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
924
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
925 if (context_.GetIndex().GetMainDicomTags(tags, publicId, resourceIdLevel, interestLevel))
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
926 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
927 switch (level)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
928 {
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
929 case ArchiveResourceType_Patient:
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
930 case ArchiveResourceType_PatientInfoFromStudy:
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
931 path = GetTag(tags, DICOM_TAG_PATIENT_ID) + " " + GetTag(tags, DICOM_TAG_PATIENT_NAME);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
932 break;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
933
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
934 case ArchiveResourceType_Study:
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
935 path = GetTag(tags, DICOM_TAG_ACCESSION_NUMBER) + " " + GetTag(tags, DICOM_TAG_STUDY_DESCRIPTION);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
936 break;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
937
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
938 case ArchiveResourceType_Series:
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
939 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
940 std::string modality = GetTag(tags, DICOM_TAG_MODALITY);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
941 path = modality + " " + GetTag(tags, DICOM_TAG_SERIES_DESCRIPTION);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
942
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
943 if (modality.size() == 0)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
944 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
945 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%%08d.dcm");
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
946 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
947 else if (modality.size() == 1)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
948 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
949 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%c%%07d.dcm",
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
950 toupper(modality[0]));
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
951 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
952 else if (modality.size() >= 2)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
953 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
954 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%c%c%%06d.dcm",
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
955 toupper(modality[0]), toupper(modality[1]));
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
956 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
957
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
958 counter_ = 0;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
959
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
960 break;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
961 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
962
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
963 default:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
964 throw OrthancException(ErrorCode_InternalError);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
965 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
966 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
967
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
968 path = Toolbox::StripSpaces(Toolbox::ConvertToAscii(path));
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
969
5448
2d23c92c359a Zip of studies whose PatientName and PatientID did not contain any ASCII character are now valid
Alain Mazy <am@osimis.io>
parents: 5430
diff changeset
970 if (path.empty()
2d23c92c359a Zip of studies whose PatientName and PatientID did not contain any ASCII character are now valid
Alain Mazy <am@osimis.io>
parents: 5430
diff changeset
971 || (static_cast<size_t>(boost::count(path, '^')) == path.size())) // this happens with non ASCII patient names: only the '^' remains and this is not a valid zip folder name
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
972 {
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
973 path = std::string("Unknown ") + EnumerationToString(GetResourceLevel(level));
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
974 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
975
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
976 commands_.AddOpenDirectory(path.c_str());
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
977 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
978
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
979 virtual void Close() ORTHANC_OVERRIDE
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
980 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
981 commands_.AddCloseDirectory();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
982 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
983
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
984 virtual void AddInstance(const std::string& instanceId,
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
985 uint64_t uncompressedSize) ORTHANC_OVERRIDE
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
986 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
987 char filename[24];
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
988 snprintf(filename, sizeof(filename) - 1, instanceFormat_, counter_);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
989 counter_ ++;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
990
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
991 commands_.AddWriteInstance(filename, instanceId, uncompressedSize);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
992 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
993 };
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
994
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
995
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
996 class ArchiveJob::MediaIndexVisitor : public IArchiveVisitor
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
997 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
998 private:
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
999 ZipCommands& commands_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1000 unsigned int counter_;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1001
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1002 public:
4591
ff8170d17d90 moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4588
diff changeset
1003 explicit MediaIndexVisitor(ZipCommands& commands) :
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1004 commands_(commands),
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1005 counter_(0)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1006 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1007 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1008
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
1009 virtual void Open(ArchiveResourceType level,
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1010 const std::string& publicId) ORTHANC_OVERRIDE
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1011 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1012 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1013
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1014 virtual void Close() ORTHANC_OVERRIDE
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1015 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1016 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1017
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1018 virtual void AddInstance(const std::string& instanceId,
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1019 uint64_t uncompressedSize) ORTHANC_OVERRIDE
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1020 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1021 // "DICOM restricts the filenames on DICOM media to 8
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1022 // characters (some systems wrongly use 8.3, but this does not
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1023 // conform to the standard)."
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1024 std::string filename = "IM" + boost::lexical_cast<std::string>(counter_);
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1025 commands_.AddWriteInstance(filename, instanceId, uncompressedSize);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1026
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1027 counter_ ++;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1028 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1029 };
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1030
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1031
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1032 class ArchiveJob::ZipWriterIterator : public boost::noncopyable
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1033 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1034 private:
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1035 ServerContext& context_;
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1036 InstanceLoader& instanceLoader_;
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1037 ZipCommands commands_;
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1038 std::unique_ptr<HierarchicalZipWriter> zip_;
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1039 std::unique_ptr<DicomDirWriter> dicomDir_;
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1040 bool isMedia_;
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1041 bool isStream_;
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1042
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1043 public:
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1044 ZipWriterIterator(ServerContext& context,
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1045 InstanceLoader& instanceLoader,
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1046 ArchiveIndex& archive,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1047 bool isMedia,
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1048 bool enableExtendedSopClass) :
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1049 context_(context),
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1050 instanceLoader_(instanceLoader),
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1051 commands_(instanceLoader),
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1052 isMedia_(isMedia),
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1053 isStream_(false)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1054 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1055 if (isMedia)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1056 {
4588
94147ce2f097 fix build on os x
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4510
diff changeset
1057 MediaIndexVisitor visitor(commands_);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1058 archive.Expand(context.GetIndex());
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1059
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1060 commands_.AddOpenDirectory(MEDIA_IMAGES_FOLDER);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1061 archive.Apply(visitor);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1062 commands_.AddCloseDirectory();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1063
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1064 dicomDir_.reset(new DicomDirWriter);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1065 dicomDir_->EnableExtendedSopClass(enableExtendedSopClass);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1066 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1067 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1068 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1069 ArchiveIndexVisitor visitor(commands_, context);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1070 archive.Expand(context.GetIndex());
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1071 archive.Apply(visitor);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1072 }
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1073 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1074
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1075 void SetOutputFile(const std::string& path)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1076 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1077 if (zip_.get() == NULL)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1078 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1079 zip_.reset(new HierarchicalZipWriter(path.c_str()));
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1080 zip_->SetZip64(commands_.IsZip64());
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1081 isStream_ = false;
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1082 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1083 else
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1084 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1085 throw OrthancException(ErrorCode_BadSequenceOfCalls);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1086 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1087 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1088
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1089 void AcquireOutputStream(ZipWriter::IOutputStream* output)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1090 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1091 std::unique_ptr<ZipWriter::IOutputStream> protection(output);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1092
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1093 if (zip_.get() == NULL)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1094 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1095 zip_.reset(new HierarchicalZipWriter(protection.release(), commands_.IsZip64()));
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1096 isStream_ = true;
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1097 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1098 else
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1099 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1100 throw OrthancException(ErrorCode_BadSequenceOfCalls);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1101 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1102 }
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1103
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1104 void CancelStream()
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1105 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1106 if (zip_.get() == NULL)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1107 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1108 throw OrthancException(ErrorCode_BadSequenceOfCalls);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1109 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1110 else if (isStream_)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1111 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1112 zip_->CancelStream();
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1113 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1114 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1115
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1116 void Close()
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1117 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1118 if (zip_.get() == NULL)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1119 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1120 throw OrthancException(ErrorCode_BadSequenceOfCalls);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1121 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1122 else
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1123 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1124 zip_->Close();
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1125 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1126 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1127
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1128 uint64_t GetArchiveSize() const
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1129 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1130 if (zip_.get() == NULL)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1131 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1132 throw OrthancException(ErrorCode_BadSequenceOfCalls);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1133 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1134 else
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1135 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1136 return zip_->GetArchiveSize();
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1137 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1138 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1139
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1140 size_t GetStepsCount() const
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1141 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1142 return commands_.GetSize() + 1;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1143 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1144
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1145 void RunStep(size_t index,
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1146 bool transcode,
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1147 DicomTransferSyntax transferSyntax)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1148 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1149 if (index > commands_.GetSize())
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1150 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1151 throw OrthancException(ErrorCode_ParameterOutOfRange);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1152 }
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1153 else if (zip_.get() == NULL)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1154 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1155 throw OrthancException(ErrorCode_BadSequenceOfCalls);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1156 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1157 else if (index == commands_.GetSize())
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1158 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1159 // Last step: Add the DICOMDIR
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1160 if (isMedia_)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1161 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1162 assert(dicomDir_.get() != NULL);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1163 std::string s;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1164 dicomDir_->Encode(s);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1165
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1166 zip_->OpenFile("DICOMDIR");
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1167 zip_->Write(s);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1168 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1169 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1170 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1171 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1172 if (isMedia_)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1173 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1174 assert(dicomDir_.get() != NULL);
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1175 commands_.Apply(*zip_, context_, instanceLoader_, index, *dicomDir_,
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1176 MEDIA_IMAGES_FOLDER, transcode, transferSyntax);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1177 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1178 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1179 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1180 assert(dicomDir_.get() == NULL);
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1181 commands_.Apply(*zip_, context_, instanceLoader_, index, transcode, transferSyntax);
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1182 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1183 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1184 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1185
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1186 unsigned int GetInstancesCount() const
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1187 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1188 return commands_.GetInstancesCount();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1189 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1190
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1191 uint64_t GetUncompressedSize() const
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1192 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1193 return commands_.GetUncompressedSize();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1194 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1195 };
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1196
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1197
2966
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1198 ArchiveJob::ArchiveJob(ServerContext& context,
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1199 bool isMedia,
5401
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
1200 bool enableExtendedSopClass,
fc604681e6be When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
Alain Mazy <am@osimis.io>
parents: 5364
diff changeset
1201 ResourceType jobLevel) :
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1202 context_(context),
5403
05cb668c5f3f fix to keep backward behaviour when exporting a series archive
Alain Mazy <am@osimis.io>
parents: 5401
diff changeset
1203 archive_(new ArchiveIndex(GetArchiveResourceType(jobLevel))), // get patient Info from this level
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1204 isMedia_(isMedia),
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1205 enableExtendedSopClass_(enableExtendedSopClass),
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1206 currentStep_(0),
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1207 instancesCount_(0),
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1208 uncompressedSize_(0),
4341
977c2759eb0a Archive/media jobs report the size of the created ZIP file in content field "ArchiveSizeMB"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4205
diff changeset
1209 archiveSize_(0),
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1210 transcode_(false),
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1211 transferSyntax_(DicomTransferSyntax_LittleEndianImplicit),
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1212 loaderThreads_(0)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1213 {
2966
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1214 }
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1215
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1216
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1217 ArchiveJob::~ArchiveJob()
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1218 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1219 if (!mediaArchiveId_.empty())
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1220 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1221 context_.GetMediaArchive().Remove(mediaArchiveId_);
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1222 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1223 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1224
2966
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1225
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1226 void ArchiveJob::AcquireSynchronousTarget(ZipWriter::IOutputStream* target)
2966
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1227 {
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1228 std::unique_ptr<ZipWriter::IOutputStream> protection(target);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1229
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1230 if (target == NULL)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1231 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1232 throw OrthancException(ErrorCode_NullPointer);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1233 }
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1234 else if (writer_.get() != NULL || // Already started
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1235 synchronousTarget_.get() != NULL ||
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1236 asynchronousTarget_.get() != NULL)
2966
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1237 {
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1238 throw OrthancException(ErrorCode_BadSequenceOfCalls);
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1239 }
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1240 else
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1241 {
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1242 synchronousTarget_.reset(protection.release());
2966
10c610e80b15 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1243 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1244 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1245
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1246
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1247 void ArchiveJob::SetDescription(const std::string& description)
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1248 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1249 if (writer_.get() != NULL) // Already started
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1250 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1251 throw OrthancException(ErrorCode_BadSequenceOfCalls);
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1252 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1253 else
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1254 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1255 description_ = description;
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1256 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1257 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1258
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1259
5169
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1260 void ArchiveJob::AddResource(const std::string& publicId,
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1261 bool mustExist,
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1262 ResourceType expectedType)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1263 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1264 if (writer_.get() != NULL) // Already started
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1265 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1266 throw OrthancException(ErrorCode_BadSequenceOfCalls);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1267 }
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1268 else
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1269 {
5169
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1270 if (mustExist)
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1271 {
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1272 ResourceType type;
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1273 if (!context_.GetIndex().LookupResourceType(type, publicId) ||
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1274 type != expectedType)
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1275 {
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1276 throw OrthancException(ErrorCode_InexistentItem,
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1277 "Missing resource while creating an archive: " + publicId);
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1278 }
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1279 }
8b74aa4f3515 enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5109
diff changeset
1280
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1281 ResourceIdentifiers resource(context_.GetIndex(), publicId);
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1282 archive_->Add(context_.GetIndex(), resource);
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1283 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1284 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1285
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1286
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1287 void ArchiveJob::SetTranscode(DicomTransferSyntax transferSyntax)
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1288 {
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1289 if (writer_.get() != NULL) // Already started
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1290 {
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1291 throw OrthancException(ErrorCode_BadSequenceOfCalls);
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1292 }
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1293 else
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1294 {
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1295 transcode_ = true;
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1296 transferSyntax_ = transferSyntax;
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1297 }
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1298 }
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1299
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1300
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1301 void ArchiveJob::SetLoaderThreads(unsigned int loaderThreads)
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1302 {
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1303 if (writer_.get() != NULL) // Already started
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1304 {
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1305 throw OrthancException(ErrorCode_BadSequenceOfCalls);
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1306 }
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1307 else
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1308 {
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1309 loaderThreads_ = loaderThreads;
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1310 }
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1311 }
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1312
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1313
2812
ea7aea6f6a95 improved naming of methods in IJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2730
diff changeset
1314 void ArchiveJob::Reset()
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1315 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2812
diff changeset
1316 throw OrthancException(ErrorCode_BadSequenceOfCalls,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2812
diff changeset
1317 "Cannot resubmit the creation of an archive");
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1318 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1319
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1320
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1321 void ArchiveJob::Start()
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1322 {
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1323 if (loaderThreads_ == 0)
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1324 {
4902
df86d2505df8 Orthanc 1.9.8 is now known as Orthanc 1.10.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
1325 // default behaviour before loaderThreads was introducted in 1.10.0
5108
a386dfb5b386 Optimization: now using multiple threads to transcode files for asynchronous download of studies archive
Alain Mazy <am@osimis.io>
parents: 4902
diff changeset
1326 instanceLoader_.reset(new SynchronousInstanceLoader(context_, transcode_, transferSyntax_));
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1327 }
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1328 else
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1329 {
5108
a386dfb5b386 Optimization: now using multiple threads to transcode files for asynchronous download of studies archive
Alain Mazy <am@osimis.io>
parents: 4902
diff changeset
1330 instanceLoader_.reset(new ThreadedInstanceLoader(context_, loaderThreads_, transcode_, transferSyntax_));
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1331 }
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1332
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1333 if (writer_.get() != NULL)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1334 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1335 throw OrthancException(ErrorCode_BadSequenceOfCalls);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1336 }
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1337 else
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1338 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1339 if (synchronousTarget_.get() == NULL)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1340 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1341 if (asynchronousTarget_.get() != NULL)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1342 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1343 // It is up to this method to create the asynchronous target
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1344 throw OrthancException(ErrorCode_InternalError);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1345 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1346 else
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1347 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1348 OrthancConfiguration::ReaderLock lock;
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1349 asynchronousTarget_.reset(lock.GetConfiguration().CreateTemporaryFile());
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1350
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1351 assert(asynchronousTarget_.get() != NULL);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1352 asynchronousTarget_->Touch(); // Make sure we can write to the temporary file
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1353
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1354 writer_.reset(new ZipWriterIterator(context_, *instanceLoader_, *archive_, isMedia_, enableExtendedSopClass_));
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1355 writer_->SetOutputFile(asynchronousTarget_->GetPath());
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1356 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1357 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1358 else
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1359 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1360 assert(synchronousTarget_.get() != NULL);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1361
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1362 writer_.reset(new ZipWriterIterator(context_, *instanceLoader_, *archive_, isMedia_, enableExtendedSopClass_));
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1363 writer_->AcquireOutputStream(synchronousTarget_.release());
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1364 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1365
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1366 instancesCount_ = writer_->GetInstancesCount();
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1367 uncompressedSize_ = writer_->GetUncompressedSize();
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1368 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1369 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1370
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1371
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1372
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1373 namespace
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1374 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1375 class DynamicTemporaryFile : public IDynamicObject
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1376 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1377 private:
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1378 std::unique_ptr<TemporaryFile> file_;
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1379
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1380 public:
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1381 explicit DynamicTemporaryFile(TemporaryFile* f) : file_(f)
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1382 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1383 if (f == NULL)
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1384 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1385 throw OrthancException(ErrorCode_NullPointer);
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1386 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1387 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1388
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1389 const TemporaryFile& GetFile() const
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1390 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1391 assert(file_.get() != NULL);
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1392 return *file_;
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1393 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1394 };
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1395 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1396
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1397
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1398 void ArchiveJob::FinalizeTarget()
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1399 {
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1400 if (writer_.get() != NULL)
4641
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1401 {
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1402 writer_->Close(); // Flush all the results
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1403 archiveSize_ = writer_->GetArchiveSize();
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1404 writer_.reset();
4641
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1405 }
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1406
4797
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1407 if (instanceLoader_.get() != NULL)
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1408 {
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1409 instanceLoader_->Clear();
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1410 }
4e765c18ace7 enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1411
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1412 if (asynchronousTarget_.get() != NULL)
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1413 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1414 // Asynchronous behavior: Move the resulting file into the media archive
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1415 mediaArchiveId_ = context_.GetMediaArchive().Add(
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1416 new DynamicTemporaryFile(asynchronousTarget_.release()));
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1417 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1418 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1419
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1420
3658
2d90dd30858c providing job ID to the IJob::Step() methods
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1421 JobStepResult ArchiveJob::Step(const std::string& jobId)
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1422 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1423 assert(writer_.get() != NULL);
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1424
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1425 if (writer_->GetStepsCount() == 0)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1426 {
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1427 FinalizeTarget();
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1428 return JobStepResult::Success();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1429 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1430 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1431 {
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1432 try
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1433 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1434 writer_->RunStep(currentStep_, transcode_, transferSyntax_);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1435 }
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1436 catch (Orthanc::OrthancException& e)
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1437 {
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1438 LOG(ERROR) << "Error while creating an archive: " << e.What();
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1439 writer_->CancelStream();
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1440 throw;
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1441 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1442
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1443 currentStep_ ++;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1444
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1445 if (currentStep_ == writer_->GetStepsCount())
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1446 {
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1447 FinalizeTarget();
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1448 return JobStepResult::Success();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1449 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1450 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1451 {
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1452 archiveSize_ = writer_->GetArchiveSize();
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1453 return JobStepResult::Continue();
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1454 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1455 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1456 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1457
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1458
4641
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1459 void ArchiveJob::Stop(JobStopReason reason)
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1460 {
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1461 /**
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1462 * New in Orthanc 1.9.3: Remove the temporary file associated with
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1463 * the job as soon as its job gets canceled (especially visible in
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1464 * asynchronous mode).
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1465 **/
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1466 if (reason == JobStopReason_Canceled ||
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1467 reason == JobStopReason_Failure ||
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1468 reason == JobStopReason_Retry)
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1469 {
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1470 writer_->CancelStream();
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1471
4641
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1472 // First delete the writer, as it holds a reference to "(a)synchronousTarget_", cf. (*)
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1473 writer_.reset();
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1474
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1475 synchronousTarget_.reset();
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1476 asynchronousTarget_.reset();
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1477 }
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1478 }
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1479
b02dc8303cf6 Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
1480
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1481 float ArchiveJob::GetProgress()
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1482 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1483 if (writer_.get() == NULL ||
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1484 writer_->GetStepsCount() == 0)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1485 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1486 return 1;
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1487 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1488 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1489 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1490 return (static_cast<float>(currentStep_) /
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1491 static_cast<float>(writer_->GetStepsCount() - 1));
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1492 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1493 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1494
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1495
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1496 void ArchiveJob::GetJobType(std::string& target)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1497 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1498 if (isMedia_)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1499 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1500 target = "Media";
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1501 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1502 else
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1503 {
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1504 target = "Archive";
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1505 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1506 }
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1507
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1508
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1509 void ArchiveJob::GetPublicContent(Json::Value& value)
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1510 {
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1511 value = Json::objectValue;
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1512 value[KEY_DESCRIPTION] = description_;
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1513 value[KEY_INSTANCES_COUNT] = instancesCount_;
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1514 value[KEY_UNCOMPRESSED_SIZE_MB] =
2643
56bee263645f fix for msvc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2636
diff changeset
1515 static_cast<unsigned int>(uncompressedSize_ / MEGA_BYTES);
4341
977c2759eb0a Archive/media jobs report the size of the created ZIP file in content field "ArchiveSizeMB"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4205
diff changeset
1516 value[KEY_ARCHIVE_SIZE_MB] =
977c2759eb0a Archive/media jobs report the size of the created ZIP file in content field "ArchiveSizeMB"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4205
diff changeset
1517 static_cast<unsigned int>(archiveSize_ / MEGA_BYTES);
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1518
4674
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1519 // New in Orthanc 1.9.4
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1520 value[KEY_ARCHIVE_SIZE] = boost::lexical_cast<std::string>(archiveSize_);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1521 value[KEY_UNCOMPRESSED_SIZE] = boost::lexical_cast<std::string>(uncompressedSize_);
cdab941fe17d ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4641
diff changeset
1522
3913
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1523 if (transcode_)
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1524 {
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1525 value[KEY_TRANSCODE] = GetTransferSyntaxUid(transferSyntax_);
6ddad3e0b569 transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
1526 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1527 }
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1528
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1529
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1530 bool ArchiveJob::GetOutput(std::string& output,
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1531 MimeType& mime,
4805
0a38000b086d Archive jobs response now contains a header Content-Disposition:filename='archive.zip'
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1532 std::string& filename,
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1533 const std::string& key)
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1534 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1535 if (key == "archive" &&
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1536 !mediaArchiveId_.empty())
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1537 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1538 SharedArchive::Accessor accessor(context_.GetMediaArchive(), mediaArchiveId_);
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1539
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1540 if (accessor.IsValid())
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1541 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1542 const DynamicTemporaryFile& f = dynamic_cast<DynamicTemporaryFile&>(accessor.GetItem());
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1543 f.GetFile().Read(output);
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1544 mime = MimeType_Zip;
4805
0a38000b086d Archive jobs response now contains a header Content-Disposition:filename='archive.zip'
Alain Mazy <am@osimis.io>
parents: 4674
diff changeset
1545 filename = "archive.zip";
2976
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1546 return true;
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1547 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1548 else
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1549 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1550 return false;
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1551 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1552 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1553 else
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1554 {
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1555 return false;
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1556 }
cb5d75143da0 Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2966
diff changeset
1557 }
5310
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1558
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1559 bool ArchiveJob::DeleteOutput(const std::string& key)
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1560 {
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1561 if (key == "archive" &&
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1562 !mediaArchiveId_.empty())
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1563 {
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1564 SharedArchive::Accessor accessor(context_.GetMediaArchive(), mediaArchiveId_);
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1565
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1566 if (accessor.IsValid())
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1567 {
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1568 context_.GetMediaArchive().Remove(mediaArchiveId_);
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1569 return true;
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1570 }
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1571 else
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1572 {
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1573 return false;
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1574 }
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1575 }
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1576 else
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1577 {
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1578 return false;
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1579 }
b5c502bcaf99 added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents: 5302
diff changeset
1580 }
5364
b5f2122a1334 Added a route to delete completed jobs from history: DELETE /jobs/{id}
Alain Mazy <am@osimis.io>
parents: 5310
diff changeset
1581
b5f2122a1334 Added a route to delete completed jobs from history: DELETE /jobs/{id}
Alain Mazy <am@osimis.io>
parents: 5310
diff changeset
1582 void ArchiveJob::DeleteAllOutputs()
b5f2122a1334 Added a route to delete completed jobs from history: DELETE /jobs/{id}
Alain Mazy <am@osimis.io>
parents: 5310
diff changeset
1583 {
b5f2122a1334 Added a route to delete completed jobs from history: DELETE /jobs/{id}
Alain Mazy <am@osimis.io>
parents: 5310
diff changeset
1584 DeleteOutput("archive");
b5f2122a1334 Added a route to delete completed jobs from history: DELETE /jobs/{id}
Alain Mazy <am@osimis.io>
parents: 5310
diff changeset
1585 }
2632
2406ae891747 ArchiveJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1586 }