Mercurial > hg > orthanc
annotate OrthancServer/Sources/Search/ISqlLookupFormatter.cpp @ 5853:4d932683049d get-scu tip
very first implementation of C-Get SCU
author | Alain Mazy <am@orthanc.team> |
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date | Tue, 29 Oct 2024 17:25:49 +0100 |
parents | 68fc5af30c03 |
children | afd421225eb4 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
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upgrade to year 2024
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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8 * |
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9 * This program is free software: you can redistribute it and/or |
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10 * modify it under the terms of the GNU General Public License as |
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11 * published by the Free Software Foundation, either version 3 of the |
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12 * License, or (at your option) any later version. |
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13 * |
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14 * This program is distributed in the hope that it will be useful, but |
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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17 * General Public License for more details. |
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18 * |
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19 * You should have received a copy of the GNU General Public License |
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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21 **/ |
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22 |
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23 |
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24 #if !defined(ORTHANC_BUILDING_SERVER_LIBRARY) |
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25 # error Macro ORTHANC_BUILDING_SERVER_LIBRARY must be defined |
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26 #endif |
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27 |
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28 #if ORTHANC_BUILDING_SERVER_LIBRARY == 1 |
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29 # include "../PrecompiledHeadersServer.h" |
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30 #endif |
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31 |
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32 #include "ISqlLookupFormatter.h" |
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33 |
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34 #if ORTHANC_BUILDING_SERVER_LIBRARY == 1 |
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35 # include "../../../OrthancFramework/Sources/OrthancException.h" |
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37 #else |
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38 # include <OrthancException.h> |
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40 #endif |
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41 |
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42 #include "DatabaseConstraint.h" |
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43 |
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46 #include <list> |
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48 | |
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49 namespace Orthanc |
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50 { |
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51 static std::string FormatLevel(ResourceType level) |
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52 { |
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53 switch (level) |
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54 { |
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55 case ResourceType_Patient: |
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56 return "patients"; |
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57 |
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58 case ResourceType_Study: |
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59 return "studies"; |
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60 |
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61 case ResourceType_Series: |
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62 return "series"; |
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63 |
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64 case ResourceType_Instance: |
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65 return "instances"; |
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66 |
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67 default: |
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68 throw OrthancException(ErrorCode_InternalError); |
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69 } |
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70 } |
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71 |
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72 |
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73 static bool FormatComparison(std::string& target, |
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74 ISqlLookupFormatter& formatter, |
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75 const DatabaseConstraint& constraint, |
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76 size_t index, |
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77 bool escapeBrackets) |
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78 { |
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79 std::string tag = "t" + boost::lexical_cast<std::string>(index); |
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80 |
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81 std::string comparison; |
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82 |
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83 switch (constraint.GetConstraintType()) |
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84 { |
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85 case ConstraintType_Equal: |
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86 case ConstraintType_SmallerOrEqual: |
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87 case ConstraintType_GreaterOrEqual: |
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88 { |
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89 std::string op; |
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90 switch (constraint.GetConstraintType()) |
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91 { |
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92 case ConstraintType_Equal: |
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93 op = "="; |
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94 break; |
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95 |
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96 case ConstraintType_SmallerOrEqual: |
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97 op = "<="; |
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98 break; |
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99 |
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100 case ConstraintType_GreaterOrEqual: |
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101 op = ">="; |
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102 break; |
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103 |
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104 default: |
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105 throw OrthancException(ErrorCode_InternalError); |
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106 } |
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107 |
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108 std::string parameter = formatter.GenerateParameter(constraint.GetSingleValue()); |
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109 |
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110 if (constraint.IsCaseSensitive()) |
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111 { |
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112 comparison = tag + ".value " + op + " " + parameter; |
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113 } |
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114 else |
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115 { |
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116 comparison = "lower(" + tag + ".value) " + op + " lower(" + parameter + ")"; |
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117 } |
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118 |
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119 break; |
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120 } |
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121 |
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122 case ConstraintType_List: |
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123 { |
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124 for (size_t i = 0; i < constraint.GetValuesCount(); i++) |
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125 { |
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126 if (!comparison.empty()) |
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127 { |
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128 comparison += ", "; |
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129 } |
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130 |
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131 std::string parameter = formatter.GenerateParameter(constraint.GetValue(i)); |
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132 |
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133 if (constraint.IsCaseSensitive()) |
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134 { |
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135 comparison += parameter; |
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136 } |
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137 else |
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138 { |
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139 comparison += "lower(" + parameter + ")"; |
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140 } |
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141 } |
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142 |
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143 if (constraint.IsCaseSensitive()) |
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144 { |
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145 comparison = tag + ".value IN (" + comparison + ")"; |
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146 } |
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147 else |
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148 { |
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149 comparison = "lower(" + tag + ".value) IN (" + comparison + ")"; |
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150 } |
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151 |
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152 break; |
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153 } |
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154 |
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155 case ConstraintType_Wildcard: |
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156 { |
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157 const std::string value = constraint.GetSingleValue(); |
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158 |
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159 if (value == "*") |
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160 { |
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161 if (!constraint.IsMandatory()) |
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162 { |
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163 // Universal constraint on an optional tag, ignore it |
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164 return false; |
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165 } |
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166 } |
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167 else |
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168 { |
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169 std::string escaped; |
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170 escaped.reserve(value.size()); |
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171 |
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172 for (size_t i = 0; i < value.size(); i++) |
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173 { |
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|
174 if (value[i] == '*') |
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175 { |
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176 escaped += "%"; |
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177 } |
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178 else if (value[i] == '?') |
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179 { |
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180 escaped += "_"; |
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181 } |
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182 else if (value[i] == '%') |
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183 { |
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184 escaped += "\\%"; |
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185 } |
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186 else if (value[i] == '_') |
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187 { |
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188 escaped += "\\_"; |
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189 } |
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190 else if (value[i] == '\\') |
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191 { |
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|
192 escaped += "\\\\"; |
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|
193 } |
4817
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added ISqlLookupFormatter::IsEscapeBrackets()
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4437
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|
194 else if (escapeBrackets && value[i] == '[') |
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|
195 { |
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added ISqlLookupFormatter::IsEscapeBrackets()
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|
196 escaped += "\\["; |
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|
197 } |
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added ISqlLookupFormatter::IsEscapeBrackets()
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|
198 else if (escapeBrackets && value[i] == ']') |
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added ISqlLookupFormatter::IsEscapeBrackets()
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4437
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|
199 { |
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added ISqlLookupFormatter::IsEscapeBrackets()
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|
200 escaped += "\\]"; |
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4437
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|
201 } |
3058
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|
202 else |
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|
203 { |
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|
204 escaped += value[i]; |
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|
205 } |
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|
206 } |
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|
207 |
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|
208 std::string parameter = formatter.GenerateParameter(escaped); |
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209 |
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|
210 if (constraint.IsCaseSensitive()) |
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|
211 { |
3079
65e2bfa953ef
ISqlLookupFormatter::FormatWildcardEscape()
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3078
diff
changeset
|
212 comparison = (tag + ".value LIKE " + parameter + " " + |
65e2bfa953ef
ISqlLookupFormatter::FormatWildcardEscape()
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3078
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|
213 formatter.FormatWildcardEscape()); |
3058
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|
214 } |
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|
215 else |
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changeset
|
216 { |
3079
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ISqlLookupFormatter::FormatWildcardEscape()
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3078
diff
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|
217 comparison = ("lower(" + tag + ".value) LIKE lower(" + |
65e2bfa953ef
ISqlLookupFormatter::FormatWildcardEscape()
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3078
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|
218 parameter + ") " + formatter.FormatWildcardEscape()); |
3058
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|
219 } |
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|
220 } |
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221 |
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222 break; |
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223 } |
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224 |
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225 default: |
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226 return false; |
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227 } |
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228 |
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229 if (constraint.IsMandatory()) |
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230 { |
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231 target = comparison; |
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232 } |
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233 else if (comparison.empty()) |
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234 { |
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235 target = tag + ".value IS NULL"; |
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236 } |
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237 else |
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238 { |
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239 target = tag + ".value IS NULL OR " + comparison; |
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240 } |
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241 |
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242 return true; |
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243 } |
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244 |
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245 |
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246 static void FormatJoin(std::string& target, |
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247 const DatabaseConstraint& constraint, |
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248 size_t index) |
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249 { |
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250 std::string tag = "t" + boost::lexical_cast<std::string>(index); |
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251 |
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252 if (constraint.IsMandatory()) |
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253 { |
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254 target = " INNER JOIN "; |
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255 } |
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256 else |
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257 { |
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258 target = " LEFT JOIN "; |
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259 } |
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260 |
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261 if (constraint.IsIdentifier()) |
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262 { |
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263 target += "DicomIdentifiers "; |
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264 } |
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265 else |
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266 { |
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267 target += "MainDicomTags "; |
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268 } |
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269 |
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270 target += (tag + " ON " + tag + ".id = " + FormatLevel(constraint.GetLevel()) + |
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271 ".internalId AND " + tag + ".tagGroup = " + |
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272 boost::lexical_cast<std::string>(constraint.GetTag().GetGroup()) + |
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273 " AND " + tag + ".tagElement = " + |
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274 boost::lexical_cast<std::string>(constraint.GetTag().GetElement())); |
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275 } |
5227
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276 |
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277 |
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278 static std::string Join(const std::list<std::string>& values, |
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279 const std::string& prefix, |
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280 const std::string& separator) |
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281 { |
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282 if (values.empty()) |
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283 { |
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284 return ""; |
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285 } |
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286 else |
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287 { |
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288 std::string s = prefix; |
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289 |
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290 bool first = true; |
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291 for (std::list<std::string>::const_iterator it = values.begin(); it != values.end(); ++it) |
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292 { |
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293 if (first) |
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294 { |
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295 first = false; |
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296 } |
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297 else |
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298 { |
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299 s += separator; |
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300 } |
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301 |
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302 s += *it; |
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303 } |
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304 |
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305 return s; |
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306 } |
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307 } |
5422 | 308 |
309 static bool FormatComparison2(std::string& target, | |
310 ISqlLookupFormatter& formatter, | |
311 const DatabaseConstraint& constraint, | |
312 bool escapeBrackets) | |
313 { | |
314 std::string comparison; | |
315 std::string tagFilter = ("tagGroup = " + boost::lexical_cast<std::string>(constraint.GetTag().GetGroup()) | |
316 + " AND tagElement = " + boost::lexical_cast<std::string>(constraint.GetTag().GetElement())); | |
317 | |
318 switch (constraint.GetConstraintType()) | |
319 { | |
320 case ConstraintType_Equal: | |
321 case ConstraintType_SmallerOrEqual: | |
322 case ConstraintType_GreaterOrEqual: | |
323 { | |
324 std::string op; | |
325 switch (constraint.GetConstraintType()) | |
326 { | |
327 case ConstraintType_Equal: | |
328 op = "="; | |
329 break; | |
330 | |
331 case ConstraintType_SmallerOrEqual: | |
332 op = "<="; | |
333 break; | |
334 | |
335 case ConstraintType_GreaterOrEqual: | |
336 op = ">="; | |
337 break; | |
338 | |
339 default: | |
340 throw OrthancException(ErrorCode_InternalError); | |
341 } | |
342 | |
343 std::string parameter = formatter.GenerateParameter(constraint.GetSingleValue()); | |
344 | |
345 if (constraint.IsCaseSensitive()) | |
346 { | |
347 comparison = " AND value " + op + " " + parameter; | |
348 } | |
349 else | |
350 { | |
351 comparison = " AND lower(value) " + op + " lower(" + parameter + ")"; | |
352 } | |
353 | |
354 break; | |
355 } | |
356 | |
357 case ConstraintType_List: | |
358 { | |
359 std::vector<std::string> comparisonValues; | |
360 for (size_t i = 0; i < constraint.GetValuesCount(); i++) | |
361 { | |
362 std::string parameter = formatter.GenerateParameter(constraint.GetValue(i)); | |
363 | |
364 if (constraint.IsCaseSensitive()) | |
365 { | |
366 comparisonValues.push_back(parameter); | |
367 } | |
368 else | |
369 { | |
370 comparisonValues.push_back("lower(" + parameter + ")"); | |
371 } | |
372 } | |
373 | |
374 std::string values; | |
375 Toolbox::JoinStrings(values, comparisonValues, ", "); | |
376 | |
377 if (constraint.IsCaseSensitive()) | |
378 { | |
379 comparison = " AND value IN (" + values + ")"; | |
380 } | |
381 else | |
382 { | |
383 comparison = " AND lower(value) IN (" + values + ")"; | |
384 } | |
385 | |
386 break; | |
387 } | |
388 | |
389 case ConstraintType_Wildcard: | |
390 { | |
391 const std::string value = constraint.GetSingleValue(); | |
3058
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392 |
5422 | 393 if (value == "*") |
394 { | |
395 if (!constraint.IsMandatory()) | |
396 { | |
397 // Universal constraint on an optional tag, ignore it | |
398 return false; | |
399 } | |
400 } | |
401 else | |
402 { | |
403 std::string escaped; | |
404 escaped.reserve(value.size()); | |
405 | |
406 for (size_t i = 0; i < value.size(); i++) | |
407 { | |
408 if (value[i] == '*') | |
409 { | |
410 escaped += "%"; | |
411 } | |
412 else if (value[i] == '?') | |
413 { | |
414 escaped += "_"; | |
415 } | |
416 else if (value[i] == '%') | |
417 { | |
418 escaped += "\\%"; | |
419 } | |
420 else if (value[i] == '_') | |
421 { | |
422 escaped += "\\_"; | |
423 } | |
424 else if (value[i] == '\\') | |
425 { | |
426 escaped += "\\\\"; | |
427 } | |
428 else if (escapeBrackets && value[i] == '[') | |
429 { | |
430 escaped += "\\["; | |
431 } | |
432 else if (escapeBrackets && value[i] == ']') | |
433 { | |
434 escaped += "\\]"; | |
435 } | |
436 else | |
437 { | |
438 escaped += value[i]; | |
439 } | |
440 } | |
441 | |
442 std::string parameter = formatter.GenerateParameter(escaped); | |
443 | |
444 if (constraint.IsCaseSensitive()) | |
445 { | |
446 comparison = " AND value LIKE " + parameter + " " + formatter.FormatWildcardEscape(); | |
447 } | |
448 else | |
449 { | |
450 comparison = " AND lower(value) LIKE lower(" + parameter + ") " + formatter.FormatWildcardEscape(); | |
451 } | |
452 } | |
453 | |
454 break; | |
455 } | |
456 | |
457 default: | |
458 return false; | |
459 } | |
460 | |
461 if (constraint.IsMandatory()) | |
462 { | |
463 target = tagFilter + comparison; | |
464 } | |
465 else if (comparison.empty()) | |
466 { | |
467 target = tagFilter + " AND value IS NULL"; | |
468 } | |
469 else | |
470 { | |
471 target = tagFilter + " AND value IS NULL OR " + comparison; | |
472 } | |
473 | |
474 return true; | |
475 } | |
476 | |
477 | |
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478 void ISqlLookupFormatter::GetLookupLevels(ResourceType& lowerLevel, |
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479 ResourceType& upperLevel, |
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480 const ResourceType& queryLevel, |
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481 const DatabaseConstraints& lookup) |
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482 { |
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483 assert(ResourceType_Patient < ResourceType_Study && |
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484 ResourceType_Study < ResourceType_Series && |
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485 ResourceType_Series < ResourceType_Instance); |
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486 |
5422 | 487 lowerLevel = queryLevel; |
488 upperLevel = queryLevel; | |
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489 |
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490 for (size_t i = 0; i < lookup.GetSize(); i++) |
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491 { |
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492 ResourceType level = lookup.GetConstraint(i).GetLevel(); |
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493 |
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494 if (level < upperLevel) |
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495 { |
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496 upperLevel = level; |
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497 } |
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498 |
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499 if (level > lowerLevel) |
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500 { |
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501 lowerLevel = level; |
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502 } |
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503 } |
5422 | 504 } |
505 | |
506 | |
507 void ISqlLookupFormatter::Apply(std::string& sql, | |
508 ISqlLookupFormatter& formatter, | |
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509 const DatabaseConstraints& lookup, |
5422 | 510 ResourceType queryLevel, |
511 const std::set<std::string>& labels, | |
512 LabelsConstraint labelsConstraint, | |
513 size_t limit) | |
514 { | |
515 ResourceType lowerLevel, upperLevel; | |
516 GetLookupLevels(lowerLevel, upperLevel, queryLevel, lookup); | |
517 | |
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518 assert(upperLevel <= queryLevel && |
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519 queryLevel <= lowerLevel); |
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520 |
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521 const bool escapeBrackets = formatter.IsEscapeBrackets(); |
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522 |
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523 std::string joins, comparisons; |
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524 |
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525 size_t count = 0; |
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526 |
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527 for (size_t i = 0; i < lookup.GetSize(); i++) |
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528 { |
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529 const DatabaseConstraint& constraint = lookup.GetConstraint(i); |
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530 |
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531 std::string comparison; |
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532 |
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533 if (FormatComparison(comparison, formatter, constraint, count, escapeBrackets)) |
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534 { |
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535 std::string join; |
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536 FormatJoin(join, constraint, count); |
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537 joins += join; |
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538 |
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539 if (!comparison.empty()) |
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540 { |
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541 comparisons += " AND " + comparison; |
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542 } |
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543 |
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544 count ++; |
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545 } |
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546 } |
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547 |
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548 sql = ("SELECT " + |
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549 FormatLevel(queryLevel) + ".publicId, " + |
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550 FormatLevel(queryLevel) + ".internalId" + |
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551 " FROM Resources AS " + FormatLevel(queryLevel)); |
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552 |
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553 for (int level = queryLevel - 1; level >= upperLevel; level--) |
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554 { |
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555 sql += (" INNER JOIN Resources " + |
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556 FormatLevel(static_cast<ResourceType>(level)) + " ON " + |
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557 FormatLevel(static_cast<ResourceType>(level)) + ".internalId=" + |
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558 FormatLevel(static_cast<ResourceType>(level + 1)) + ".parentId"); |
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559 } |
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560 |
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561 for (int level = queryLevel + 1; level <= lowerLevel; level++) |
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562 { |
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563 sql += (" INNER JOIN Resources " + |
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564 FormatLevel(static_cast<ResourceType>(level)) + " ON " + |
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565 FormatLevel(static_cast<ResourceType>(level - 1)) + ".internalId=" + |
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566 FormatLevel(static_cast<ResourceType>(level)) + ".parentId"); |
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567 } |
5227
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568 |
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569 std::list<std::string> where; |
5256 | 570 where.push_back(FormatLevel(queryLevel) + ".resourceType = " + |
571 formatter.FormatResourceType(queryLevel) + comparisons); | |
5227
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572 |
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573 if (!labels.empty()) |
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574 { |
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575 /** |
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576 * "In SQL Server, NOT EXISTS and NOT IN predicates are the best |
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577 * way to search for missing values, as long as both columns in |
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578 * question are NOT NULL." |
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579 * https://explainextended.com/2009/09/15/not-in-vs-not-exists-vs-left-join-is-null-sql-server/ |
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580 **/ |
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581 |
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582 std::list<std::string> formattedLabels; |
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583 for (std::set<std::string>::const_iterator it = labels.begin(); it != labels.end(); ++it) |
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584 { |
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585 formattedLabels.push_back(formatter.GenerateParameter(*it)); |
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586 } |
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587 |
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588 std::string condition; |
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589 switch (labelsConstraint) |
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590 { |
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591 case LabelsConstraint_Any: |
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592 condition = "> 0"; |
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593 break; |
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594 |
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595 case LabelsConstraint_All: |
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596 condition = "= " + boost::lexical_cast<std::string>(labels.size()); |
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597 break; |
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598 |
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599 case LabelsConstraint_None: |
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600 condition = "= 0"; |
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601 break; |
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602 |
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603 default: |
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604 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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605 } |
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606 |
5256 | 607 where.push_back("(SELECT COUNT(1) FROM Labels AS selectedLabels WHERE selectedLabels.id = " + FormatLevel(queryLevel) + |
608 ".internalId AND selectedLabels.label IN (" + Join(formattedLabels, "", ", ") + ")) " + condition); | |
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609 } |
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610 |
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611 sql += joins + Join(where, " WHERE ", " AND "); |
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612 |
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613 if (limit != 0) |
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614 { |
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615 sql += " LIMIT " + boost::lexical_cast<std::string>(limit); |
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616 } |
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617 } |
5422 | 618 |
619 | |
620 void ISqlLookupFormatter::ApplySingleLevel(std::string& sql, | |
621 ISqlLookupFormatter& formatter, | |
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622 const DatabaseConstraints& lookup, |
5422 | 623 ResourceType queryLevel, |
624 const std::set<std::string>& labels, | |
625 LabelsConstraint labelsConstraint, | |
626 size_t limit | |
627 ) | |
628 { | |
629 ResourceType lowerLevel, upperLevel; | |
630 GetLookupLevels(lowerLevel, upperLevel, queryLevel, lookup); | |
631 | |
632 assert(upperLevel == queryLevel && | |
633 queryLevel == lowerLevel); | |
634 | |
635 const bool escapeBrackets = formatter.IsEscapeBrackets(); | |
636 | |
637 std::vector<std::string> mainDicomTagsComparisons, dicomIdentifiersComparisons; | |
638 | |
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639 for (size_t i = 0; i < lookup.GetSize(); i++) |
5422 | 640 { |
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641 const DatabaseConstraint& constraint = lookup.GetConstraint(i); |
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642 |
5422 | 643 std::string comparison; |
644 | |
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645 if (FormatComparison2(comparison, formatter, constraint, escapeBrackets)) |
5422 | 646 { |
647 if (!comparison.empty()) | |
648 { | |
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649 if (constraint.IsIdentifier()) |
5422 | 650 { |
651 dicomIdentifiersComparisons.push_back(comparison); | |
652 } | |
653 else | |
654 { | |
655 mainDicomTagsComparisons.push_back(comparison); | |
656 } | |
657 } | |
658 } | |
659 } | |
660 | |
661 sql = ("SELECT publicId, internalId " | |
662 "FROM Resources " | |
663 "WHERE resourceType = " + formatter.FormatResourceType(queryLevel) | |
664 + " "); | |
665 | |
666 if (dicomIdentifiersComparisons.size() > 0) | |
667 { | |
668 for (std::vector<std::string>::const_iterator it = dicomIdentifiersComparisons.begin(); it < dicomIdentifiersComparisons.end(); ++it) | |
669 { | |
670 sql += (" AND internalId IN (SELECT id FROM DicomIdentifiers WHERE " + *it + ") "); | |
671 } | |
672 } | |
673 | |
674 if (mainDicomTagsComparisons.size() > 0) | |
675 { | |
676 for (std::vector<std::string>::const_iterator it = mainDicomTagsComparisons.begin(); it < mainDicomTagsComparisons.end(); ++it) | |
677 { | |
678 sql += (" AND internalId IN (SELECT id FROM MainDicomTags WHERE " + *it + ") "); | |
679 } | |
680 } | |
681 | |
682 if (!labels.empty()) | |
683 { | |
684 /** | |
685 * "In SQL Server, NOT EXISTS and NOT IN predicates are the best | |
686 * way to search for missing values, as long as both columns in | |
687 * question are NOT NULL." | |
688 * https://explainextended.com/2009/09/15/not-in-vs-not-exists-vs-left-join-is-null-sql-server/ | |
689 **/ | |
690 | |
691 std::list<std::string> formattedLabels; | |
692 for (std::set<std::string>::const_iterator it = labels.begin(); it != labels.end(); ++it) | |
693 { | |
694 formattedLabels.push_back(formatter.GenerateParameter(*it)); | |
695 } | |
696 | |
697 std::string condition; | |
698 std::string inOrNotIn; | |
699 switch (labelsConstraint) | |
700 { | |
701 case LabelsConstraint_Any: | |
702 condition = "> 0"; | |
703 inOrNotIn = "IN"; | |
704 break; | |
705 | |
706 case LabelsConstraint_All: | |
707 condition = "= " + boost::lexical_cast<std::string>(labels.size()); | |
708 inOrNotIn = "IN"; | |
709 break; | |
710 | |
711 case LabelsConstraint_None: | |
712 condition = "> 0"; | |
713 inOrNotIn = "NOT IN"; | |
714 break; | |
715 | |
716 default: | |
717 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
718 } | |
719 | |
720 sql += (" AND internalId " + inOrNotIn + " (SELECT id" | |
721 " FROM (SELECT id, COUNT(1) AS labelsCount " | |
722 "FROM Labels " | |
723 "WHERE label IN (" + Join(formattedLabels, "", ", ") + ") GROUP BY id" | |
724 ") AS temp " | |
725 " WHERE labelsCount " + condition + ")"); | |
726 } | |
727 | |
728 if (limit != 0) | |
729 { | |
730 sql += " LIMIT " + boost::lexical_cast<std::string>(limit); | |
731 } | |
732 } | |
733 | |
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734 } |