Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancGetRequestHandler.cpp @ 5224:feba2b0e91bc
Fix a crash in /tools/reconstruct triggered by the Housekeeper plugin when only changing the StorageCompression.
author | Alain Mazy <am@osimis.io> |
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date | Mon, 03 Apr 2023 22:19:42 +0200 |
parents | 0ea402b4d901 |
children | 3c8286e5d07b 48b8dae6dc77 |
rev | line source |
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3818 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
3818 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
9 * modify it under the terms of the GNU General Public License as | |
10 * published by the Free Software Foundation, either version 3 of the | |
11 * License, or (at your option) any later version. | |
12 * | |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
16 * General Public License for more details. | |
17 * | |
18 * You should have received a copy of the GNU General Public License | |
19 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
20 **/ | |
21 | |
22 #include "PrecompiledHeadersServer.h" | |
23 #include "OrthancGetRequestHandler.h" | |
24 | |
4045 | 25 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
26 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
27 #include "../../OrthancFramework/Sources/Logging.h" | |
28 #include "../../OrthancFramework/Sources/MetricsRegistry.h" | |
3818 | 29 #include "OrthancConfiguration.h" |
30 #include "ServerContext.h" | |
31 #include "ServerJobs/DicomModalityStoreJob.h" | |
32 | |
3963 | 33 #include <dcmtk/dcmdata/dcdeftag.h> |
34 #include <dcmtk/dcmdata/dcfilefo.h> | |
35 #include <dcmtk/dcmdata/dcistrmb.h> | |
36 #include <dcmtk/dcmnet/assoc.h> | |
37 #include <dcmtk/dcmnet/dimse.h> | |
38 #include <dcmtk/dcmnet/diutil.h> | |
39 #include <dcmtk/ofstd/ofstring.h> | |
40 | |
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41 #include <sstream> // For std::stringstream |
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42 |
3818 | 43 namespace Orthanc |
44 { | |
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45 static void ProgressCallback(void *callbackData, |
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46 T_DIMSE_StoreProgress *progress, |
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47 T_DIMSE_C_StoreRQ *req) |
3818 | 48 { |
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49 if (req != NULL && |
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50 progress->state == DIMSE_StoreBegin) |
3818 | 51 { |
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52 OFString str; |
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53 CLOG(TRACE, DICOM) << "Sending Store Request following a C-GET:" << std::endl |
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54 << DIMSE_dumpMessage(str, *req, DIMSE_OUTGOING); |
3818 | 55 } |
56 } | |
57 | |
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58 |
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59 bool OrthancGetRequestHandler::DoNext(T_ASC_Association* assoc) |
3818 | 60 { |
61 if (position_ >= instances_.size()) | |
62 { | |
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63 throw OrthancException(ErrorCode_ParameterOutOfRange); |
3818 | 64 } |
65 | |
66 const std::string& id = instances_[position_++]; | |
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67 |
3818 | 68 std::string dicom; |
69 context_.ReadDicom(dicom, id); | |
70 | |
4204 | 71 if (dicom.empty()) |
3818 | 72 { |
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73 throw OrthancException(ErrorCode_BadFileFormat); |
3818 | 74 } |
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75 |
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76 std::unique_ptr<DcmFileFormat> parsed( |
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77 FromDcmtkBridge::LoadFromMemoryBuffer(dicom.c_str(), dicom.size())); |
3954 | 78 |
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79 if (parsed.get() == NULL || |
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80 parsed->getDataset() == NULL) |
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82 throw OrthancException(ErrorCode_InternalError); |
3954 | 83 } |
3818 | 84 |
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85 DcmDataset& dataset = *parsed->getDataset(); |
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86 |
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87 OFString a, b; |
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88 if (!dataset.findAndGetOFString(DCM_SOPClassUID, a).good() || |
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89 !dataset.findAndGetOFString(DCM_SOPInstanceUID, b).good()) |
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90 { |
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91 throw OrthancException(ErrorCode_NoSopClassOrInstance, |
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92 "Unable to determine the SOP class/instance for C-STORE with AET " + |
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93 originatorAet_); |
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94 } |
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95 |
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96 std::string sopClassUid(a.c_str()); |
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97 std::string sopInstanceUid(b.c_str()); |
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98 |
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99 return PerformGetSubOp(assoc, sopClassUid, sopInstanceUid, parsed.release()); |
3818 | 100 } |
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101 |
3818 | 102 |
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103 void OrthancGetRequestHandler::AddFailedUIDInstance(const std::string& sopInstance) |
3818 | 104 { |
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105 if (failedUIDs_.empty()) |
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106 { |
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107 failedUIDs_ = sopInstance; |
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108 } |
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109 else |
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110 { |
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111 failedUIDs_ += "\\" + sopInstance; |
3818 | 112 } |
113 } | |
114 | |
115 | |
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116 static bool SelectPresentationContext(T_ASC_PresentationContextID& selectedPresentationId, |
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117 DicomTransferSyntax& selectedSyntax, |
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118 T_ASC_Association* assoc, |
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119 const std::string& sopClassUid, |
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120 DicomTransferSyntax sourceSyntax, |
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121 bool allowTranscoding) |
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122 { |
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123 typedef std::map<DicomTransferSyntax, T_ASC_PresentationContextID> Accepted; |
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124 |
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125 Accepted accepted; |
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126 |
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127 /** |
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128 * 1. Inspect and index all the accepted transfer syntaxes. This |
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129 * is similar to the code from "DicomAssociation::Open()". |
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130 **/ |
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131 |
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132 LST_HEAD **l = &assoc->params->DULparams.acceptedPresentationContext; |
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133 if (*l != NULL) |
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134 { |
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135 DUL_PRESENTATIONCONTEXT* pc = (DUL_PRESENTATIONCONTEXT*) LST_Head(l); |
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136 LST_Position(l, (LST_NODE*)pc); |
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137 while (pc) |
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138 { |
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139 DicomTransferSyntax transferSyntax; |
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140 if (pc->result == ASC_P_ACCEPTANCE) |
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141 { |
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142 if (LookupTransferSyntax(transferSyntax, pc->acceptedTransferSyntax)) |
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143 { |
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144 /*CLOG(TRACE, DICOM) << "C-GET SCP accepted: SOP class " << pc->abstractSyntax |
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145 << " with transfer syntax " << GetTransferSyntaxUid(transferSyntax);*/ |
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146 if (std::string(pc->abstractSyntax) == sopClassUid) |
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147 { |
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148 accepted[transferSyntax] = pc->presentationContextID; |
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149 } |
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150 } |
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151 else |
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152 { |
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153 CLOG(WARNING, DICOM) << "C-GET: Unknown transfer syntax received: " |
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154 << pc->acceptedTransferSyntax; |
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155 } |
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156 } |
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157 |
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158 pc = (DUL_PRESENTATIONCONTEXT*) LST_Next(l); |
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159 } |
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160 } |
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161 |
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162 |
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163 /** |
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164 * 2. Select the preferred transfer syntaxes, which corresponds to |
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165 * the source transfer syntax, plus all the uncompressed transfer |
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166 * syntaxes if transcoding is enabled. |
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167 **/ |
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168 |
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169 std::list<DicomTransferSyntax> preferred; |
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170 preferred.push_back(sourceSyntax); |
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171 |
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172 if (allowTranscoding) |
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173 { |
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174 if (sourceSyntax != DicomTransferSyntax_LittleEndianImplicit) |
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175 { |
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176 // Default Transfer Syntax for DICOM |
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177 preferred.push_back(DicomTransferSyntax_LittleEndianImplicit); |
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178 } |
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179 |
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180 if (sourceSyntax != DicomTransferSyntax_LittleEndianExplicit) |
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181 { |
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182 preferred.push_back(DicomTransferSyntax_LittleEndianExplicit); |
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183 } |
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184 |
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185 if (sourceSyntax != DicomTransferSyntax_BigEndianExplicit) |
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186 { |
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187 // Retired |
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188 preferred.push_back(DicomTransferSyntax_BigEndianExplicit); |
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189 } |
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190 } |
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191 |
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192 |
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193 /** |
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194 * 3. Lookup whether one of the preferred transfer syntaxes was |
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195 * accepted. |
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196 **/ |
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197 |
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198 for (std::list<DicomTransferSyntax>::const_iterator |
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199 it = preferred.begin(); it != preferred.end(); ++it) |
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200 { |
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201 Accepted::const_iterator found = accepted.find(*it); |
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202 if (found != accepted.end()) |
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203 { |
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204 selectedPresentationId = found->second; |
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205 selectedSyntax = *it; |
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206 return true; |
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207 } |
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208 } |
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209 |
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210 // No preferred syntax was accepted |
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211 return false; |
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212 } |
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213 |
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214 |
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215 bool OrthancGetRequestHandler::PerformGetSubOp(T_ASC_Association* assoc, |
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216 const std::string& sopClassUid, |
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217 const std::string& sopInstanceUid, |
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218 DcmFileFormat* dicomRaw) |
3818 | 219 { |
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220 assert(dicomRaw != NULL); |
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221 std::unique_ptr<DcmFileFormat> dicom(dicomRaw); |
3818 | 222 |
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223 DicomTransferSyntax sourceSyntax; |
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224 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(sourceSyntax, *dicom)) |
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225 { |
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226 failedCount_++; |
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227 AddFailedUIDInstance(sopInstanceUid); |
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228 throw OrthancException(ErrorCode_NetworkProtocol, |
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229 "C-GET SCP: Unknown transfer syntax: (" + |
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230 std::string(dcmSOPClassUIDToModality(sopClassUid.c_str(), "OT")) + |
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231 ") " + sopClassUid); |
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232 } |
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233 |
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234 T_ASC_PresentationContextID presId = 0; // Unnecessary initialization, makes code clearer |
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235 DicomTransferSyntax selectedSyntax; |
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236 if (!SelectPresentationContext(presId, selectedSyntax, assoc, sopClassUid, |
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237 sourceSyntax, allowTranscoding_) || |
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238 presId == 0) |
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239 { |
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240 failedCount_++; |
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241 AddFailedUIDInstance(sopInstanceUid); |
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242 throw OrthancException(ErrorCode_NetworkProtocol, |
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243 "C-GET SCP: storeSCU: No presentation context for: (" + |
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244 std::string(dcmSOPClassUIDToModality(sopClassUid.c_str(), "OT")) + |
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245 ") " + sopClassUid); |
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246 } |
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247 else |
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248 { |
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249 CLOG(INFO, DICOM) << "C-GET SCP selected transfer syntax " << GetTransferSyntaxUid(selectedSyntax) |
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250 << ", for source instance with SOP class " << sopClassUid |
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251 << " and transfer syntax " << GetTransferSyntaxUid(sourceSyntax); |
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252 |
3818 | 253 // make sure that we can send images in this presentation context |
254 T_ASC_PresentationContext pc; | |
255 ASC_findAcceptedPresentationContext(assoc->params, presId, &pc); | |
256 // the acceptedRole is the association requestor role | |
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257 |
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258 if (pc.acceptedRole != ASC_SC_ROLE_DEFAULT && // "DEFAULT" is necessary for GinkgoCADx |
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259 pc.acceptedRole != ASC_SC_ROLE_SCP && |
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260 pc.acceptedRole != ASC_SC_ROLE_SCUSCP) |
3818 | 261 { |
262 // the role is not appropriate | |
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263 failedCount_++; |
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264 AddFailedUIDInstance(sopInstanceUid); |
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265 throw OrthancException(ErrorCode_NetworkProtocol, |
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266 "C-GET SCP: storeSCU: [No presentation context with requestor SCP role for: (" + |
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267 std::string(dcmSOPClassUIDToModality(sopClassUid.c_str(), "OT")) + |
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268 ") " + sopClassUid); |
3818 | 269 } |
270 } | |
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271 |
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272 const DIC_US msgId = assoc->nextMsgID++; |
3818 | 273 |
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274 T_DIMSE_C_StoreRQ req; |
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275 memset(&req, 0, sizeof(req)); |
3818 | 276 req.MessageID = msgId; |
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277 strncpy(req.AffectedSOPClassUID, sopClassUid.c_str(), DIC_UI_LEN); |
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278 strncpy(req.AffectedSOPInstanceUID, sopInstanceUid.c_str(), DIC_UI_LEN); |
3818 | 279 req.DataSetType = DIMSE_DATASET_PRESENT; |
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280 req.Priority = DIMSE_PRIORITY_MEDIUM; |
3818 | 281 req.opts = 0; |
282 | |
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283 T_DIMSE_C_StoreRSP rsp; |
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284 memset(&rsp, 0, sizeof(rsp)); |
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285 |
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286 CLOG(INFO, DICOM) << "Store SCU RQ: MsgID " << msgId << ", (" |
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287 << dcmSOPClassUIDToModality(sopClassUid.c_str(), "OT") << ")"; |
3818 | 288 |
289 T_DIMSE_DetectedCancelParameters cancelParameters; | |
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290 memset(&cancelParameters, 0, sizeof(cancelParameters)); |
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291 |
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292 std::unique_ptr<DcmDataset> stDetail; |
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293 |
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294 OFCondition cond; |
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295 |
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296 if (sourceSyntax == selectedSyntax) |
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297 { |
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298 // No transcoding is required |
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299 DcmDataset *stDetailTmp = NULL; |
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300 cond = DIMSE_storeUser( |
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301 assoc, presId, &req, NULL /* imageFileName */, dicom->getDataset(), |
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302 ProgressCallback, NULL /* callbackData */, |
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303 (timeout_ > 0 ? DIMSE_NONBLOCKING : DIMSE_BLOCKING), timeout_, |
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304 &rsp, &stDetailTmp, &cancelParameters); |
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305 stDetail.reset(stDetailTmp); |
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306 } |
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307 else |
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308 { |
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309 // Transcoding to the selected uncompressed transfer syntax |
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310 IDicomTranscoder::DicomImage source, transcoded; |
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311 source.AcquireParsed(dicom.release()); |
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312 |
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313 std::set<DicomTransferSyntax> ts; |
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314 ts.insert(selectedSyntax); |
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315 |
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316 if (context_.Transcode(transcoded, source, ts, true)) |
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317 { |
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318 // Transcoding has succeeded |
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319 DcmDataset *stDetailTmp = NULL; |
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320 cond = DIMSE_storeUser( |
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321 assoc, presId, &req, NULL /* imageFileName */, |
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322 transcoded.GetParsed().getDataset(), |
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323 ProgressCallback, NULL /* callbackData */, |
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324 (timeout_ > 0 ? DIMSE_NONBLOCKING : DIMSE_BLOCKING), timeout_, |
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325 &rsp, &stDetailTmp, &cancelParameters); |
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326 stDetail.reset(stDetailTmp); |
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327 } |
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328 else |
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329 { |
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330 // Cannot transcode |
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331 failedCount_++; |
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332 AddFailedUIDInstance(sopInstanceUid); |
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333 throw OrthancException(ErrorCode_NotImplemented, |
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334 "C-GET SCP: Cannot transcode " + sopClassUid + |
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335 " from transfer syntax " + GetTransferSyntaxUid(sourceSyntax) + |
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336 " to " + GetTransferSyntaxUid(selectedSyntax)); |
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337 } |
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338 } |
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339 |
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340 bool isContinue; |
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341 |
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342 if (cond.good()) |
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343 { |
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344 { |
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345 OFString str; |
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346 CLOG(TRACE, DICOM) << "Received Store Response following a C-GET:" << std::endl |
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347 << DIMSE_dumpMessage(str, rsp, DIMSE_INCOMING); |
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348 } |
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349 |
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350 if (cancelParameters.cancelEncountered) |
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351 { |
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352 CLOG(INFO, DICOM) << "C-GET SCP: Received C-Cancel RQ"; |
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353 isContinue = false; |
3818 | 354 } |
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355 else if (rsp.DimseStatus == STATUS_Success) |
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356 { |
3818 | 357 // everything ok |
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358 completedCount_++; |
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359 isContinue = true; |
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360 } |
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361 else if ((rsp.DimseStatus & 0xf000) == 0xb000) |
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362 { |
3818 | 363 // a warning status message |
364 warningCount_++; | |
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365 CLOG(ERROR, DICOM) << "C-GET SCP: Store Warning: Response Status: " |
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366 << DU_cstoreStatusString(rsp.DimseStatus); |
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367 isContinue = true; |
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368 } |
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369 else |
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370 { |
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371 failedCount_++; |
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372 AddFailedUIDInstance(sopInstanceUid); |
3818 | 373 // print a status message |
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374 CLOG(ERROR, DICOM) << "C-GET SCP: Store Failed: Response Status: " |
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375 << DU_cstoreStatusString(rsp.DimseStatus); |
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376 isContinue = true; |
3818 | 377 } |
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378 } |
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379 else |
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380 { |
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381 failedCount_++; |
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382 AddFailedUIDInstance(sopInstanceUid); |
3818 | 383 OFString temp_str; |
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384 CLOG(ERROR, DICOM) << "C-GET SCP: storeSCU: Store Request Failed: " |
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385 << DimseCondition::dump(temp_str, cond); |
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386 isContinue = true; |
3818 | 387 } |
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388 |
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389 if (stDetail.get() != NULL) |
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390 { |
4288 | 391 std::stringstream s; // DcmObject::PrintHelper cannot be used with VS2008 |
392 stDetail->print(s); | |
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393 CLOG(INFO, DICOM) << " Status Detail: " << s.str(); |
3818 | 394 } |
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395 |
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396 return isContinue; |
3818 | 397 } |
398 | |
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399 bool OrthancGetRequestHandler::LookupIdentifiers(std::list<std::string>& publicIds, |
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400 ResourceType level, |
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401 const DicomMap& input) const |
3818 | 402 { |
403 DicomTag tag(0, 0); // Dummy initialization | |
404 | |
405 switch (level) | |
406 { | |
407 case ResourceType_Patient: | |
408 tag = DICOM_TAG_PATIENT_ID; | |
409 break; | |
410 | |
411 case ResourceType_Study: | |
412 tag = (input.HasTag(DICOM_TAG_ACCESSION_NUMBER) ? | |
413 DICOM_TAG_ACCESSION_NUMBER : DICOM_TAG_STUDY_INSTANCE_UID); | |
414 break; | |
415 | |
416 case ResourceType_Series: | |
417 tag = DICOM_TAG_SERIES_INSTANCE_UID; | |
418 break; | |
419 | |
420 case ResourceType_Instance: | |
421 tag = DICOM_TAG_SOP_INSTANCE_UID; | |
422 break; | |
423 | |
424 default: | |
425 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
426 } | |
427 | |
428 if (!input.HasTag(tag)) | |
429 { | |
430 return false; | |
431 } | |
432 | |
433 const DicomValue& value = input.GetValue(tag); | |
434 if (value.IsNull() || | |
435 value.IsBinary()) | |
436 { | |
437 return false; | |
438 } | |
439 else | |
440 { | |
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441 std::vector<std::string> tokens; |
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442 Toolbox::TokenizeString(tokens, value.GetContent(), '\\'); |
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443 |
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444 for (size_t i = 0; i < tokens.size(); i++) |
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445 { |
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446 std::vector<std::string> tmp; |
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447 context_.GetIndex().LookupIdentifierExact(tmp, level, tag, tokens[i]); |
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448 |
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449 if (tmp.empty()) |
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450 { |
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451 CLOG(ERROR, DICOM) << "C-GET: Cannot locate resource \"" << tokens[i] |
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452 << "\" at the " << EnumerationToString(level) << " level"; |
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453 return false; |
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454 } |
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455 else |
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456 { |
4204 | 457 for (size_t j = 0; j < tmp.size(); j++) |
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458 { |
4204 | 459 publicIds.push_back(tmp[j]); |
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460 } |
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461 } |
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462 } |
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463 |
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464 return true; |
3818 | 465 } |
466 } | |
467 | |
468 | |
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469 OrthancGetRequestHandler::OrthancGetRequestHandler(ServerContext& context) : |
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470 context_(context), |
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471 position_(0), |
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472 completedCount_ (0), |
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473 warningCount_(0), |
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474 failedCount_(0), |
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475 timeout_(0), |
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476 allowTranscoding_(false) |
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477 { |
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478 } |
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479 |
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480 |
3818 | 481 bool OrthancGetRequestHandler::Handle(const DicomMap& input, |
482 const std::string& originatorIp, | |
483 const std::string& originatorAet, | |
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484 const std::string& calledAet, |
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485 uint32_t timeout) |
3818 | 486 { |
487 MetricsRegistry::Timer timer(context_.GetMetricsRegistry(), "orthanc_get_scp_duration_ms"); | |
488 | |
4806 | 489 CLOG(INFO, DICOM) << "C-GET-SCU request received from AET \"" << originatorAet << "\""; |
3818 | 490 |
491 { | |
492 DicomArray query(input); | |
493 for (size_t i = 0; i < query.GetSize(); i++) | |
494 { | |
495 if (!query.GetElement(i).GetValue().IsNull()) | |
496 { | |
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497 CLOG(INFO, DICOM) << " (" << query.GetElement(i).GetTag().Format() |
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498 << ") " << FromDcmtkBridge::GetTagName(query.GetElement(i)) |
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499 << " = " << context_.GetDeidentifiedContent(query.GetElement(i)); |
3818 | 500 } |
501 } | |
502 } | |
503 | |
504 /** | |
505 * Retrieve the query level. | |
506 **/ | |
507 | |
508 const DicomValue* levelTmp = input.TestAndGetValue(DICOM_TAG_QUERY_RETRIEVE_LEVEL); | |
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509 if (levelTmp == NULL || |
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510 levelTmp->IsNull() || |
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511 levelTmp->IsBinary()) |
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512 { |
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513 throw OrthancException(ErrorCode_BadRequest, |
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514 "C-GET request without the tag 0008,0052 (QueryRetrieveLevel)"); |
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515 } |
3818 | 516 |
517 ResourceType level = StringToResourceType(levelTmp->GetContent().c_str()); | |
518 | |
519 | |
520 /** | |
521 * Lookup for the resource to be sent. | |
522 **/ | |
523 | |
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524 std::list<std::string> publicIds; |
3818 | 525 |
3954 | 526 if (!LookupIdentifiers(publicIds, level, input)) |
527 { | |
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528 CLOG(ERROR, DICOM) << "Cannot determine what resources are requested by C-GET"; |
3954 | 529 return false; |
530 } | |
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531 |
3818 | 532 localAet_ = context_.GetDefaultLocalApplicationEntityTitle(); |
533 position_ = 0; | |
534 originatorAet_ = originatorAet; | |
535 | |
536 { | |
537 OrthancConfiguration::ReaderLock lock; | |
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538 |
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539 RemoteModalityParameters remote; |
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540 |
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541 if (lock.GetConfiguration().LookupDicomModalityUsingAETitle(remote, originatorAet)) |
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542 { |
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543 allowTranscoding_ = (context_.IsTranscodeDicomProtocol() && |
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544 remote.IsTranscodingAllowed()); |
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545 } |
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546 else if (lock.GetConfiguration().GetBooleanParameter("DicomAlwaysAllowGet", false)) |
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547 { |
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548 CLOG(INFO, DICOM) << "C-GET: Allowing SCU request from unknown modality with AET: " << originatorAet; |
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549 allowTranscoding_ = context_.IsTranscodeDicomProtocol(); |
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550 } |
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551 else |
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552 { |
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553 // This should never happen, given the test at bottom of |
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554 // "OrthancApplicationEntityFilter::IsAllowedRequest()" |
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555 throw OrthancException(ErrorCode_InexistentItem, |
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556 "C-GET: Rejecting SCU request from unknown modality with AET: " + originatorAet); |
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557 } |
3818 | 558 } |
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559 |
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560 for (std::list<std::string>::const_iterator |
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561 resource = publicIds.begin(); resource != publicIds.end(); ++resource) |
3818 | 562 { |
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563 CLOG(INFO, DICOM) << "C-GET: Sending resource " << *resource |
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564 << " to modality \"" << originatorAet << "\""; |
3818 | 565 |
566 std::list<std::string> tmp; | |
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567 context_.GetIndex().GetChildInstances(tmp, *resource); |
3818 | 568 |
569 instances_.reserve(tmp.size()); | |
570 for (std::list<std::string>::iterator it = tmp.begin(); it != tmp.end(); ++it) | |
571 { | |
572 instances_.push_back(*it); | |
573 } | |
574 } | |
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575 |
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576 failedUIDs_.clear(); |
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577 |
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578 completedCount_ = 0; |
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579 failedCount_ = 0; |
3818 | 580 warningCount_ = 0; |
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581 timeout_ = timeout; |
3818 | 582 |
3954 | 583 return true; |
3818 | 584 } |
585 }; |