Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancWebDav.cpp @ 4443:fd958175c5b9
ImageProcessing::ConvertJpegYCbCrToRgb()
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 12 Jan 2021 13:07:15 +0100 |
| parents | d9473bd5ed43 |
| children | 6831de40acd9 |
| rev | line source |
|---|---|
| 4240 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
|
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 4240 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #include "OrthancWebDav.h" | |
| 35 | |
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36 #include "../../OrthancFramework/Sources/Compression/ZipReader.h" |
| 4240 | 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
| 38 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
| 39 #include "../../OrthancFramework/Sources/HttpServer/WebDavStorage.h" | |
| 4304 | 40 #include "../../OrthancFramework/Sources/Logging.h" |
| 4240 | 41 #include "Search/DatabaseLookup.h" |
| 42 #include "ServerContext.h" | |
| 43 | |
| 44 #include <boost/regex.hpp> | |
| 45 #include <boost/algorithm/string/predicate.hpp> | |
| 46 | |
| 47 | |
| 48 static const char* const BY_PATIENTS = "by-patients"; | |
| 49 static const char* const BY_STUDIES = "by-studies"; | |
| 4241 | 50 static const char* const BY_DATES = "by-dates"; |
| 4240 | 51 static const char* const BY_UIDS = "by-uids"; |
| 52 static const char* const UPLOADS = "uploads"; | |
| 53 static const char* const MAIN_DICOM_TAGS = "MainDicomTags"; | |
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54 static const char* const STUDY_INFO = "study.json"; |
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55 static const char* const SERIES_INFO = "series.json"; |
| 4240 | 56 |
| 57 | |
| 58 namespace Orthanc | |
| 59 { | |
| 60 static boost::posix_time::ptime GetNow() | |
| 61 { | |
| 62 return boost::posix_time::second_clock::universal_time(); | |
| 63 } | |
| 64 | |
| 65 | |
| 66 static void LookupTime(boost::posix_time::ptime& target, | |
| 67 ServerContext& context, | |
| 68 const std::string& publicId, | |
| 69 MetadataType metadata) | |
| 70 { | |
| 71 std::string value; | |
| 72 if (context.GetIndex().LookupMetadata(value, publicId, metadata)) | |
| 73 { | |
| 74 try | |
| 75 { | |
| 76 target = boost::posix_time::from_iso_string(value); | |
| 77 return; | |
| 78 } | |
| 79 catch (std::exception& e) | |
| 80 { | |
| 81 } | |
| 82 } | |
| 83 | |
| 84 target = GetNow(); | |
| 85 } | |
| 86 | |
| 87 | |
| 88 class OrthancWebDav::DicomIdentifiersVisitor : public ServerContext::ILookupVisitor | |
| 89 { | |
| 90 private: | |
| 91 ServerContext& context_; | |
| 92 bool isComplete_; | |
| 93 Collection& target_; | |
| 94 ResourceType level_; | |
| 95 | |
| 96 public: | |
| 97 DicomIdentifiersVisitor(ServerContext& context, | |
| 98 Collection& target, | |
| 99 ResourceType level) : | |
| 100 context_(context), | |
| 101 isComplete_(false), | |
| 102 target_(target), | |
| 103 level_(level) | |
| 104 { | |
| 105 } | |
| 106 | |
| 107 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 108 { | |
| 109 return false; // (*) | |
| 110 } | |
| 111 | |
| 112 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 113 { | |
| 114 isComplete_ = true; // TODO | |
| 115 } | |
| 116 | |
| 117 virtual void Visit(const std::string& publicId, | |
| 118 const std::string& instanceId /* unused */, | |
| 119 const DicomMap& mainDicomTags, | |
| 120 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 121 { | |
| 122 DicomTag tag(0, 0); | |
| 123 MetadataType timeMetadata; | |
| 124 | |
| 125 switch (level_) | |
| 126 { | |
| 127 case ResourceType_Study: | |
| 128 tag = DICOM_TAG_STUDY_INSTANCE_UID; | |
| 129 timeMetadata = MetadataType_LastUpdate; | |
| 130 break; | |
| 131 | |
| 132 case ResourceType_Series: | |
| 133 tag = DICOM_TAG_SERIES_INSTANCE_UID; | |
| 134 timeMetadata = MetadataType_LastUpdate; | |
| 135 break; | |
| 136 | |
| 137 case ResourceType_Instance: | |
| 138 tag = DICOM_TAG_SOP_INSTANCE_UID; | |
| 139 timeMetadata = MetadataType_Instance_ReceptionDate; | |
| 140 break; | |
| 141 | |
| 142 default: | |
| 143 throw OrthancException(ErrorCode_InternalError); | |
| 144 } | |
| 145 | |
| 146 std::string s; | |
| 147 if (mainDicomTags.LookupStringValue(s, tag, false) && | |
| 148 !s.empty()) | |
| 149 { | |
| 150 std::unique_ptr<Resource> resource; | |
| 151 | |
| 152 if (level_ == ResourceType_Instance) | |
| 153 { | |
| 154 FileInfo info; | |
| 155 if (context_.GetIndex().LookupAttachment(info, publicId, FileContentType_Dicom)) | |
| 156 { | |
| 157 std::unique_ptr<File> f(new File(s + ".dcm")); | |
| 158 f->SetMimeType(MimeType_Dicom); | |
| 159 f->SetContentLength(info.GetUncompressedSize()); | |
| 160 resource.reset(f.release()); | |
| 161 } | |
| 162 } | |
| 163 else | |
| 164 { | |
| 165 resource.reset(new Folder(s)); | |
| 166 } | |
| 167 | |
| 168 if (resource.get() != NULL) | |
| 169 { | |
| 170 boost::posix_time::ptime t; | |
| 171 LookupTime(t, context_, publicId, timeMetadata); | |
| 172 resource->SetCreationTime(t); | |
| 173 target_.AddResource(resource.release()); | |
| 174 } | |
| 175 } | |
| 176 } | |
| 177 }; | |
| 178 | |
| 179 | |
| 180 class OrthancWebDav::DicomFileVisitor : public ServerContext::ILookupVisitor | |
| 181 { | |
| 182 private: | |
| 183 ServerContext& context_; | |
| 184 bool success_; | |
| 185 std::string& target_; | |
| 186 boost::posix_time::ptime& time_; | |
| 187 | |
| 188 public: | |
| 189 DicomFileVisitor(ServerContext& context, | |
| 190 std::string& target, | |
| 191 boost::posix_time::ptime& time) : | |
| 192 context_(context), | |
| 193 success_(false), | |
| 194 target_(target), | |
| 195 time_(time) | |
| 196 { | |
| 197 } | |
| 198 | |
| 199 bool IsSuccess() const | |
| 200 { | |
| 201 return success_; | |
| 202 } | |
| 203 | |
| 204 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 205 { | |
| 206 return false; // (*) | |
| 207 } | |
| 208 | |
| 209 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 210 { | |
| 211 } | |
| 212 | |
| 213 virtual void Visit(const std::string& publicId, | |
| 214 const std::string& instanceId /* unused */, | |
| 215 const DicomMap& mainDicomTags, | |
| 216 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 217 { | |
| 218 if (success_) | |
| 219 { | |
| 220 success_ = false; // Two matches => Error | |
| 221 } | |
| 222 else | |
| 223 { | |
| 224 LookupTime(time_, context_, publicId, MetadataType_Instance_ReceptionDate); | |
| 225 context_.ReadDicom(target_, publicId); | |
| 226 success_ = true; | |
| 227 } | |
| 228 } | |
| 229 }; | |
| 230 | |
| 231 | |
| 232 class OrthancWebDav::OrthancJsonVisitor : public ServerContext::ILookupVisitor | |
| 233 { | |
| 234 private: | |
| 235 ServerContext& context_; | |
| 236 bool success_; | |
| 237 std::string& target_; | |
| 238 ResourceType level_; | |
| 239 | |
| 240 public: | |
| 241 OrthancJsonVisitor(ServerContext& context, | |
| 242 std::string& target, | |
| 243 ResourceType level) : | |
| 244 context_(context), | |
| 245 success_(false), | |
| 246 target_(target), | |
| 247 level_(level) | |
| 248 { | |
| 249 } | |
| 250 | |
| 251 bool IsSuccess() const | |
| 252 { | |
| 253 return success_; | |
| 254 } | |
| 255 | |
| 256 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 257 { | |
| 258 return false; // (*) | |
| 259 } | |
| 260 | |
| 261 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 262 { | |
| 263 } | |
| 264 | |
| 265 virtual void Visit(const std::string& publicId, | |
| 266 const std::string& instanceId /* unused */, | |
| 267 const DicomMap& mainDicomTags, | |
| 268 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 269 { | |
| 270 Json::Value info; | |
| 271 if (context_.GetIndex().LookupResource(info, publicId, level_)) | |
| 272 { | |
| 273 if (success_) | |
| 274 { | |
| 275 success_ = false; // Two matches => Error | |
| 276 } | |
| 277 else | |
| 278 { | |
| 279 target_ = info.toStyledString(); | |
| 280 | |
| 281 // Replace UNIX newlines with DOS newlines | |
| 282 boost::replace_all(target_, "\n", "\r\n"); | |
| 283 | |
| 284 success_ = true; | |
| 285 } | |
| 286 } | |
| 287 } | |
| 288 }; | |
| 289 | |
| 290 | |
| 291 class OrthancWebDav::ResourcesIndex : public boost::noncopyable | |
| 292 { | |
| 293 public: | |
| 294 typedef std::map<std::string, std::string> Map; | |
| 295 | |
| 296 private: | |
| 297 ServerContext& context_; | |
| 298 ResourceType level_; | |
| 299 std::string template_; | |
| 300 Map pathToResource_; | |
| 301 Map resourceToPath_; | |
| 302 | |
| 303 void CheckInvariants() | |
| 304 { | |
| 305 #ifndef NDEBUG | |
| 306 assert(pathToResource_.size() == resourceToPath_.size()); | |
| 307 | |
| 308 for (Map::const_iterator it = pathToResource_.begin(); it != pathToResource_.end(); ++it) | |
| 309 { | |
| 310 assert(resourceToPath_[it->second] == it->first); | |
| 311 } | |
| 312 | |
| 313 for (Map::const_iterator it = resourceToPath_.begin(); it != resourceToPath_.end(); ++it) | |
| 314 { | |
| 315 assert(pathToResource_[it->second] == it->first); | |
| 316 } | |
| 317 #endif | |
| 318 } | |
| 319 | |
| 320 void AddTags(DicomMap& target, | |
| 321 const std::string& resourceId, | |
| 322 ResourceType tagsFromLevel) | |
| 323 { | |
| 324 DicomMap tags; | |
| 325 if (context_.GetIndex().GetMainDicomTags(tags, resourceId, level_, tagsFromLevel)) | |
| 326 { | |
| 327 target.Merge(tags); | |
| 328 } | |
| 329 } | |
| 330 | |
| 331 void Register(const std::string& resourceId) | |
| 332 { | |
| 333 // Don't register twice the same resource | |
| 334 if (resourceToPath_.find(resourceId) == resourceToPath_.end()) | |
| 335 { | |
| 336 std::string name = template_; | |
| 337 | |
| 338 DicomMap tags; | |
| 339 | |
| 340 AddTags(tags, resourceId, level_); | |
| 341 | |
| 342 if (level_ == ResourceType_Study) | |
| 343 { | |
| 344 AddTags(tags, resourceId, ResourceType_Patient); | |
| 345 } | |
| 346 | |
| 347 DicomArray arr(tags); | |
| 348 for (size_t i = 0; i < arr.GetSize(); i++) | |
| 349 { | |
| 350 const DicomElement& element = arr.GetElement(i); | |
| 351 if (!element.GetValue().IsNull() && | |
| 352 !element.GetValue().IsBinary()) | |
| 353 { | |
| 354 const std::string tag = FromDcmtkBridge::GetTagName(element.GetTag(), ""); | |
| 355 boost::replace_all(name, "{{" + tag + "}}", element.GetValue().GetContent()); | |
| 356 } | |
| 357 } | |
| 358 | |
| 359 // Blank the tags that were not matched | |
| 360 static const boost::regex REGEX_BLANK_TAGS("{{.*?}}"); // non-greedy match | |
| 361 name = boost::regex_replace(name, REGEX_BLANK_TAGS, ""); | |
| 362 | |
| 363 // UTF-8 characters cannot be used on Windows XP | |
| 364 name = Toolbox::ConvertToAscii(name); | |
| 365 boost::replace_all(name, "/", ""); | |
| 366 boost::replace_all(name, "\\", ""); | |
| 367 | |
| 368 // Trim sequences of spaces as one single space | |
| 369 static const boost::regex REGEX_TRIM_SPACES("{{.*?}}"); | |
| 370 name = boost::regex_replace(name, REGEX_TRIM_SPACES, " "); | |
| 371 name = Toolbox::StripSpaces(name); | |
| 372 | |
| 373 size_t count = 0; | |
| 374 for (;;) | |
| 375 { | |
| 376 std::string path = name; | |
| 377 if (count > 0) | |
| 378 { | |
| 379 path += " (" + boost::lexical_cast<std::string>(count) + ")"; | |
| 380 } | |
| 381 | |
| 382 if (pathToResource_.find(path) == pathToResource_.end()) | |
| 383 { | |
| 384 pathToResource_[path] = resourceId; | |
| 385 resourceToPath_[resourceId] = path; | |
| 386 return; | |
| 387 } | |
| 388 | |
| 389 count++; | |
| 390 } | |
| 391 | |
| 392 throw OrthancException(ErrorCode_InternalError); | |
| 393 } | |
| 394 } | |
| 395 | |
| 396 public: | |
| 397 ResourcesIndex(ServerContext& context, | |
| 398 ResourceType level, | |
| 399 const std::string& templateString) : | |
| 400 context_(context), | |
| 401 level_(level), | |
| 402 template_(templateString) | |
| 403 { | |
| 404 } | |
| 405 | |
| 406 ResourceType GetLevel() const | |
| 407 { | |
| 408 return level_; | |
| 409 } | |
| 410 | |
| 411 void Refresh(std::set<std::string>& removedPaths /* out */, | |
| 412 const std::set<std::string>& resources) | |
| 413 { | |
| 414 CheckInvariants(); | |
| 415 | |
| 416 // Detect the resources that have been removed since last refresh | |
| 417 removedPaths.clear(); | |
| 418 std::set<std::string> removedResources; | |
| 419 | |
| 420 for (Map::iterator it = resourceToPath_.begin(); it != resourceToPath_.end(); ++it) | |
| 421 { | |
| 422 if (resources.find(it->first) == resources.end()) | |
| 423 { | |
| 424 const std::string& path = it->second; | |
| 425 | |
| 426 assert(pathToResource_.find(path) != pathToResource_.end()); | |
| 427 pathToResource_.erase(path); | |
| 428 removedPaths.insert(path); | |
| 429 | |
| 430 removedResources.insert(it->first); // Delay the removal to avoid disturbing the iterator | |
| 431 } | |
| 432 } | |
| 433 | |
| 434 // Remove the missing resources | |
| 435 for (std::set<std::string>::const_iterator it = removedResources.begin(); it != removedResources.end(); ++it) | |
| 436 { | |
| 437 assert(resourceToPath_.find(*it) != resourceToPath_.end()); | |
| 438 resourceToPath_.erase(*it); | |
| 439 } | |
| 440 | |
| 441 CheckInvariants(); | |
| 442 | |
| 443 for (std::set<std::string>::const_iterator it = resources.begin(); it != resources.end(); ++it) | |
| 444 { | |
| 445 Register(*it); | |
| 446 } | |
| 447 | |
| 448 CheckInvariants(); | |
| 449 } | |
| 450 | |
| 451 const Map& GetPathToResource() const | |
| 452 { | |
| 453 return pathToResource_; | |
| 454 } | |
| 455 }; | |
| 456 | |
| 457 | |
| 458 class OrthancWebDav::InstancesOfSeries : public INode | |
| 459 { | |
| 460 private: | |
| 461 ServerContext& context_; | |
| 462 std::string parentSeries_; | |
| 463 | |
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464 static bool LookupInstanceId(std::string& instanceId, |
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465 const UriComponents& path) |
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466 { |
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467 if (path.size() == 1 && |
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468 boost::ends_with(path[0], ".dcm")) |
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469 { |
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470 instanceId = path[0].substr(0, path[0].size() - 4); |
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471 return true; |
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472 } |
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473 else |
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474 { |
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475 return false; |
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476 } |
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477 } |
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478 |
| 4240 | 479 public: |
| 480 InstancesOfSeries(ServerContext& context, | |
| 481 const std::string& parentSeries) : | |
| 482 context_(context), | |
| 483 parentSeries_(parentSeries) | |
| 484 { | |
| 485 } | |
| 486 | |
| 487 virtual bool ListCollection(IWebDavBucket::Collection& target, | |
| 488 const UriComponents& path) ORTHANC_OVERRIDE | |
| 489 { | |
| 490 if (path.empty()) | |
| 491 { | |
| 492 std::list<std::string> resources; | |
| 493 try | |
| 494 { | |
| 495 context_.GetIndex().GetChildren(resources, parentSeries_); | |
| 496 } | |
| 497 catch (OrthancException&) | |
| 498 { | |
| 499 // Unknown (or deleted) parent series | |
| 500 return false; | |
| 501 } | |
| 502 | |
| 503 for (std::list<std::string>::const_iterator | |
| 504 it = resources.begin(); it != resources.end(); ++it) | |
| 505 { | |
| 506 boost::posix_time::ptime time; | |
| 507 LookupTime(time, context_, *it, MetadataType_Instance_ReceptionDate); | |
| 508 | |
| 509 FileInfo info; | |
| 510 if (context_.GetIndex().LookupAttachment(info, *it, FileContentType_Dicom)) | |
| 511 { | |
| 512 std::unique_ptr<File> resource(new File(*it + ".dcm")); | |
| 513 resource->SetMimeType(MimeType_Dicom); | |
| 514 resource->SetContentLength(info.GetUncompressedSize()); | |
| 515 resource->SetCreationTime(time); | |
| 516 target.AddResource(resource.release()); | |
| 517 } | |
| 518 } | |
| 519 | |
| 520 return true; | |
| 521 } | |
| 522 else | |
| 523 { | |
| 524 return false; | |
| 525 } | |
| 526 } | |
| 527 | |
| 528 virtual bool GetFileContent(MimeType& mime, | |
| 529 std::string& content, | |
| 530 boost::posix_time::ptime& time, | |
| 531 const UriComponents& path) ORTHANC_OVERRIDE | |
| 532 { | |
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533 std::string instanceId; |
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534 if (LookupInstanceId(instanceId, path)) |
| 4240 | 535 { |
| 536 try | |
| 537 { | |
| 538 mime = MimeType_Dicom; | |
| 539 context_.ReadDicom(content, instanceId); | |
| 540 LookupTime(time, context_, instanceId, MetadataType_Instance_ReceptionDate); | |
| 541 return true; | |
| 542 } | |
| 543 catch (OrthancException&) | |
| 544 { | |
| 545 // File was removed | |
| 546 return false; | |
| 547 } | |
| 548 } | |
| 549 else | |
| 550 { | |
| 551 return false; | |
| 552 } | |
| 553 } | |
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554 |
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555 virtual bool DeleteItem(const UriComponents& path) ORTHANC_OVERRIDE |
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556 { |
| 4252 | 557 if (path.empty()) |
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558 { |
| 4252 | 559 // Delete all |
| 560 std::list<std::string> resources; | |
| 561 try | |
| 562 { | |
| 563 context_.GetIndex().GetChildren(resources, parentSeries_); | |
| 564 } | |
| 565 catch (OrthancException&) | |
| 566 { | |
| 567 // Unknown (or deleted) parent series | |
| 568 return true; | |
| 569 } | |
| 570 | |
| 571 for (std::list<std::string>::const_iterator it = resources.begin(); | |
| 572 it != resources.end(); ++it) | |
| 573 { | |
| 574 Json::Value info; | |
| 575 context_.DeleteResource(info, *it, ResourceType_Instance); | |
| 576 } | |
| 577 | |
| 578 return true; | |
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579 } |
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580 else |
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581 { |
| 4252 | 582 std::string instanceId; |
| 583 if (LookupInstanceId(instanceId, path)) | |
| 584 { | |
| 585 Json::Value info; | |
| 586 return context_.DeleteResource(info, instanceId, ResourceType_Instance); | |
| 587 } | |
| 588 else | |
| 589 { | |
| 590 return false; | |
| 591 } | |
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592 } |
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593 } |
| 4240 | 594 }; |
| 595 | |
| 596 | |
| 597 | |
| 598 /** | |
| 599 * The "InternalNode" class corresponds to a non-leaf node in the | |
| 600 * WebDAV tree, that only contains subfolders (no file). | |
| 601 * | |
| 602 * TODO: Implement a LRU index to dynamically remove the oldest | |
| 603 * children on high RAM usage. | |
| 604 **/ | |
| 605 class OrthancWebDav::InternalNode : public INode | |
| 606 { | |
| 607 private: | |
| 608 typedef std::map<std::string, INode*> Children; | |
| 609 | |
| 610 Children children_; | |
| 611 | |
| 612 INode* GetChild(const std::string& path) // Don't delete the result pointer! | |
| 613 { | |
| 614 Children::const_iterator child = children_.find(path); | |
| 615 if (child == children_.end()) | |
| 616 { | |
| 4253 | 617 INode* node = CreateSubfolder(path); |
| 4240 | 618 |
| 4253 | 619 if (node == NULL) |
| 4240 | 620 { |
| 621 return NULL; | |
| 622 } | |
| 623 else | |
| 624 { | |
| 4253 | 625 children_[path] = node; |
| 626 return node; | |
| 4240 | 627 } |
| 628 } | |
| 629 else | |
| 630 { | |
| 631 assert(child->second != NULL); | |
| 632 return child->second; | |
| 633 } | |
| 634 } | |
| 635 | |
| 636 protected: | |
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637 void InvalidateSubfolder(const std::string& path) |
| 4240 | 638 { |
| 639 Children::iterator child = children_.find(path); | |
| 640 if (child != children_.end()) | |
| 641 { | |
| 642 assert(child->second != NULL); | |
| 643 delete child->second; | |
| 644 children_.erase(child); | |
| 645 } | |
| 646 } | |
| 647 | |
| 648 virtual void Refresh() = 0; | |
| 649 | |
| 650 virtual bool ListSubfolders(IWebDavBucket::Collection& target) = 0; | |
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651 |
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652 virtual INode* CreateSubfolder(const std::string& path) = 0; |
| 4240 | 653 |
| 654 public: | |
| 655 virtual ~InternalNode() | |
| 656 { | |
| 657 for (Children::iterator it = children_.begin(); it != children_.end(); ++it) | |
| 658 { | |
| 659 assert(it->second != NULL); | |
| 660 delete it->second; | |
| 661 } | |
| 662 } | |
| 663 | |
| 664 virtual bool ListCollection(IWebDavBucket::Collection& target, | |
| 665 const UriComponents& path) | |
| 666 ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 667 { | |
| 668 Refresh(); | |
| 669 | |
| 670 if (path.empty()) | |
| 671 { | |
| 672 return ListSubfolders(target); | |
| 673 } | |
| 674 else | |
| 675 { | |
| 676 // Recursivity | |
| 677 INode* child = GetChild(path[0]); | |
| 678 if (child == NULL) | |
| 679 { | |
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680 // Must be "true" to allow DELETE on folders that are |
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681 // automatically removed through recursive deletion |
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682 return true; |
| 4240 | 683 } |
| 684 else | |
| 685 { | |
| 686 UriComponents subpath(path.begin() + 1, path.end()); | |
| 687 return child->ListCollection(target, subpath); | |
| 688 } | |
| 689 } | |
| 690 } | |
| 691 | |
| 692 virtual bool GetFileContent(MimeType& mime, | |
| 693 std::string& content, | |
| 694 boost::posix_time::ptime& time, | |
| 695 const UriComponents& path) | |
| 696 ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 697 { | |
| 698 if (path.empty()) | |
| 699 { | |
| 700 return false; // An internal node doesn't correspond to a file | |
| 701 } | |
| 702 else | |
| 703 { | |
| 704 // Recursivity | |
| 705 Refresh(); | |
| 706 | |
| 707 INode* child = GetChild(path[0]); | |
| 708 if (child == NULL) | |
| 709 { | |
| 710 return false; | |
| 711 } | |
| 712 else | |
| 713 { | |
| 714 UriComponents subpath(path.begin() + 1, path.end()); | |
| 715 return child->GetFileContent(mime, content, time, subpath); | |
| 716 } | |
| 717 } | |
| 718 } | |
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719 |
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720 |
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721 virtual bool DeleteItem(const UriComponents& path) ORTHANC_OVERRIDE ORTHANC_FINAL |
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722 { |
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723 Refresh(); |
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724 |
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725 if (path.empty()) |
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726 { |
| 4252 | 727 IWebDavBucket::Collection collection; |
| 728 if (ListSubfolders(collection)) | |
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729 { |
| 4252 | 730 std::set<std::string> content; |
| 731 collection.ListDisplayNames(content); | |
| 732 | |
| 733 for (std::set<std::string>::const_iterator | |
| 734 it = content.begin(); it != content.end(); ++it) | |
| 735 { | |
| 736 INode* node = GetChild(*it); | |
| 737 if (node) | |
| 738 { | |
| 739 node->DeleteItem(path); | |
| 740 } | |
| 741 } | |
| 742 | |
| 743 return true; | |
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744 } |
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745 else |
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746 { |
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747 return false; |
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748 } |
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749 } |
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750 else |
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751 { |
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752 INode* child = GetChild(path[0]); |
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753 if (child == NULL) |
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754 { |
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755 return true; |
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756 } |
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757 else |
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758 { |
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759 // Recursivity |
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760 UriComponents subpath(path.begin() + 1, path.end()); |
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761 return child->DeleteItem(subpath); |
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762 } |
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763 } |
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764 } |
| 4240 | 765 }; |
| 766 | |
| 767 | |
| 768 class OrthancWebDav::ListOfResources : public InternalNode | |
| 769 { | |
| 770 private: | |
| 771 ServerContext& context_; | |
| 772 const Templates& templates_; | |
| 773 std::unique_ptr<ResourcesIndex> index_; | |
| 774 MetadataType timeMetadata_; | |
| 775 | |
| 776 protected: | |
| 777 virtual void Refresh() ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 778 { | |
| 779 std::list<std::string> resources; | |
| 780 GetCurrentResources(resources); | |
| 781 | |
| 782 std::set<std::string> removedPaths; | |
| 783 index_->Refresh(removedPaths, std::set<std::string>(resources.begin(), resources.end())); | |
| 784 | |
| 785 // Remove the children whose associated resource doesn't exist anymore | |
| 786 for (std::set<std::string>::const_iterator | |
| 787 it = removedPaths.begin(); it != removedPaths.end(); ++it) | |
| 788 { | |
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789 InvalidateSubfolder(*it); |
| 4240 | 790 } |
| 791 } | |
| 792 | |
| 793 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 794 { | |
| 795 if (index_->GetLevel() == ResourceType_Instance) | |
| 796 { | |
| 797 // Not a collection, no subfolders | |
| 798 return false; | |
| 799 } | |
| 800 else | |
| 801 { | |
| 802 const ResourcesIndex::Map& paths = index_->GetPathToResource(); | |
| 803 | |
| 804 for (ResourcesIndex::Map::const_iterator it = paths.begin(); it != paths.end(); ++it) | |
| 805 { | |
| 806 boost::posix_time::ptime time; | |
| 807 LookupTime(time, context_, it->second, timeMetadata_); | |
| 808 | |
| 809 std::unique_ptr<IWebDavBucket::Resource> resource(new IWebDavBucket::Folder(it->first)); | |
| 810 resource->SetCreationTime(time); | |
| 811 target.AddResource(resource.release()); | |
| 812 } | |
| 813 | |
| 814 return true; | |
| 815 } | |
| 816 } | |
| 817 | |
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818 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE ORTHANC_FINAL |
| 4240 | 819 { |
| 820 ResourcesIndex::Map::const_iterator resource = index_->GetPathToResource().find(path); | |
| 821 if (resource == index_->GetPathToResource().end()) | |
| 822 { | |
| 823 return NULL; | |
| 824 } | |
| 825 else | |
| 826 { | |
| 827 return CreateResourceNode(resource->second); | |
| 828 } | |
| 829 } | |
| 830 | |
| 831 ServerContext& GetContext() const | |
| 832 { | |
| 833 return context_; | |
| 834 } | |
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835 |
| 4240 | 836 virtual void GetCurrentResources(std::list<std::string>& resources) = 0; |
| 837 | |
| 838 virtual INode* CreateResourceNode(const std::string& resource) = 0; | |
| 839 | |
| 840 public: | |
| 841 ListOfResources(ServerContext& context, | |
| 842 ResourceType level, | |
| 843 const Templates& templates) : | |
| 844 context_(context), | |
| 845 templates_(templates) | |
| 846 { | |
| 847 Templates::const_iterator t = templates.find(level); | |
| 848 if (t == templates.end()) | |
| 849 { | |
| 850 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 851 } | |
| 852 | |
| 853 index_.reset(new ResourcesIndex(context, level, t->second)); | |
| 854 | |
| 855 if (level == ResourceType_Instance) | |
| 856 { | |
| 857 timeMetadata_ = MetadataType_Instance_ReceptionDate; | |
| 858 } | |
| 859 else | |
| 860 { | |
| 861 timeMetadata_ = MetadataType_LastUpdate; | |
| 862 } | |
| 863 } | |
| 864 | |
| 865 ResourceType GetLevel() const | |
| 866 { | |
| 867 return index_->GetLevel(); | |
| 868 } | |
| 869 | |
| 870 const Templates& GetTemplates() const | |
| 871 { | |
| 872 return templates_; | |
| 873 } | |
| 874 }; | |
| 875 | |
| 876 | |
| 877 | |
| 878 class OrthancWebDav::SingleDicomResource : public ListOfResources | |
| 879 { | |
| 880 private: | |
| 881 std::string parentId_; | |
| 882 | |
| 883 protected: | |
| 884 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 885 { | |
| 886 try | |
| 887 { | |
| 888 GetContext().GetIndex().GetChildren(resources, parentId_); | |
| 889 } | |
| 890 catch (OrthancException&) | |
| 891 { | |
| 892 // Unknown parent resource | |
| 893 resources.clear(); | |
| 894 } | |
| 895 } | |
| 896 | |
| 897 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 898 { | |
| 899 if (GetLevel() == ResourceType_Instance) | |
| 900 { | |
| 901 return NULL; | |
| 902 } | |
| 903 else if (GetLevel() == ResourceType_Series) | |
| 904 { | |
| 905 return new InstancesOfSeries(GetContext(), resource); | |
| 906 } | |
| 907 else | |
| 908 { | |
| 909 ResourceType l = GetChildResourceType(GetLevel()); | |
| 910 return new SingleDicomResource(GetContext(), l, resource, GetTemplates()); | |
| 911 } | |
| 912 } | |
| 913 | |
| 914 public: | |
| 915 SingleDicomResource(ServerContext& context, | |
| 916 ResourceType level, | |
| 917 const std::string& parentId, | |
| 918 const Templates& templates) : | |
| 919 ListOfResources(context, level, templates), | |
| 920 parentId_(parentId) | |
| 921 { | |
| 922 } | |
| 923 }; | |
| 924 | |
| 925 | |
| 926 class OrthancWebDav::RootNode : public ListOfResources | |
| 927 { | |
| 928 protected: | |
| 929 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 930 { | |
| 931 GetContext().GetIndex().GetAllUuids(resources, GetLevel()); | |
| 932 } | |
| 933 | |
| 934 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 935 { | |
| 936 if (GetLevel() == ResourceType_Series) | |
| 937 { | |
| 938 return new InstancesOfSeries(GetContext(), resource); | |
| 939 } | |
| 940 else | |
| 941 { | |
| 942 ResourceType l = GetChildResourceType(GetLevel()); | |
| 943 return new SingleDicomResource(GetContext(), l, resource, GetTemplates()); | |
| 944 } | |
| 945 } | |
| 946 | |
| 947 public: | |
| 948 RootNode(ServerContext& context, | |
| 949 ResourceType level, | |
| 950 const Templates& templates) : | |
| 951 ListOfResources(context, level, templates) | |
| 952 { | |
| 953 } | |
| 954 }; | |
| 955 | |
| 956 | |
| 957 class OrthancWebDav::ListOfStudiesByDate : public ListOfResources | |
| 958 { | |
| 959 private: | |
| 960 std::string year_; | |
| 961 std::string month_; | |
| 962 | |
| 963 class Visitor : public ServerContext::ILookupVisitor | |
| 964 { | |
| 965 private: | |
| 966 std::list<std::string>& resources_; | |
| 967 | |
| 968 public: | |
| 4253 | 969 explicit Visitor(std::list<std::string>& resources) : |
| 4240 | 970 resources_(resources) |
| 971 { | |
| 972 } | |
| 973 | |
| 974 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 975 { | |
| 976 return false; // (*) | |
| 977 } | |
| 978 | |
| 979 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 980 { | |
| 981 } | |
| 982 | |
| 983 virtual void Visit(const std::string& publicId, | |
| 984 const std::string& instanceId /* unused */, | |
| 985 const DicomMap& mainDicomTags, | |
| 986 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 987 { | |
| 988 resources_.push_back(publicId); | |
| 989 } | |
| 990 }; | |
| 991 | |
| 992 protected: | |
| 993 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 994 { | |
| 995 DatabaseLookup query; | |
| 996 query.AddRestConstraint(DICOM_TAG_STUDY_DATE, year_ + month_ + "01-" + year_ + month_ + "31", | |
| 997 true /* case sensitive */, true /* mandatory tag */); | |
| 998 | |
| 999 Visitor visitor(resources); | |
| 1000 GetContext().Apply(visitor, query, ResourceType_Study, 0 /* since */, 0 /* no limit */); | |
| 1001 } | |
| 1002 | |
| 1003 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 1004 { | |
| 1005 return new SingleDicomResource(GetContext(), ResourceType_Series, resource, GetTemplates()); | |
| 1006 } | |
| 1007 | |
| 1008 public: | |
| 1009 ListOfStudiesByDate(ServerContext& context, | |
| 1010 const std::string& year, | |
| 1011 const std::string& month, | |
| 1012 const Templates& templates) : | |
| 1013 ListOfResources(context, ResourceType_Study, templates), | |
| 1014 year_(year), | |
| 1015 month_(month) | |
| 1016 { | |
| 1017 if (year.size() != 4 || | |
| 1018 month.size() != 2) | |
| 1019 { | |
| 1020 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 1021 } | |
| 1022 } | |
| 1023 }; | |
| 1024 | |
| 1025 | |
| 1026 class OrthancWebDav::ListOfStudiesByMonth : public InternalNode | |
| 1027 { | |
| 1028 private: | |
| 1029 ServerContext& context_; | |
| 1030 std::string year_; | |
| 1031 const Templates& templates_; | |
| 1032 | |
| 1033 class Visitor : public ServerContext::ILookupVisitor | |
| 1034 { | |
| 1035 private: | |
| 1036 std::set<std::string> months_; | |
| 1037 | |
| 1038 public: | |
| 1039 const std::set<std::string>& GetMonths() const | |
| 1040 { | |
| 1041 return months_; | |
| 1042 } | |
| 1043 | |
| 1044 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 1045 { | |
| 1046 return false; // (*) | |
| 1047 } | |
| 1048 | |
| 1049 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 1050 { | |
| 1051 } | |
| 1052 | |
| 1053 virtual void Visit(const std::string& publicId, | |
| 1054 const std::string& instanceId /* unused */, | |
| 1055 const DicomMap& mainDicomTags, | |
| 1056 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 1057 { | |
| 1058 std::string s; | |
| 1059 if (mainDicomTags.LookupStringValue(s, DICOM_TAG_STUDY_DATE, false) && | |
| 1060 s.size() == 8) | |
| 1061 { | |
| 1062 months_.insert(s.substr(4, 2)); // Get the month from "YYYYMMDD" | |
| 1063 } | |
| 1064 } | |
| 1065 }; | |
| 1066 | |
| 1067 protected: | |
| 1068 virtual void Refresh() ORTHANC_OVERRIDE | |
| 1069 { | |
| 1070 } | |
| 1071 | |
| 1072 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE | |
| 1073 { | |
| 1074 DatabaseLookup query; | |
| 1075 query.AddRestConstraint(DICOM_TAG_STUDY_DATE, year_ + "0101-" + year_ + "1231", | |
| 1076 true /* case sensitive */, true /* mandatory tag */); | |
| 1077 | |
| 1078 Visitor visitor; | |
| 1079 context_.Apply(visitor, query, ResourceType_Study, 0 /* since */, 0 /* no limit */); | |
| 1080 | |
| 1081 for (std::set<std::string>::const_iterator it = visitor.GetMonths().begin(); | |
| 1082 it != visitor.GetMonths().end(); ++it) | |
| 1083 { | |
| 1084 target.AddResource(new IWebDavBucket::Folder(year_ + "-" + *it)); | |
| 1085 } | |
| 1086 | |
| 1087 return true; | |
| 1088 } | |
| 1089 | |
|
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1090 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE |
| 4240 | 1091 { |
| 1092 if (path.size() != 7) // Format: "YYYY-MM" | |
| 1093 { | |
| 1094 throw OrthancException(ErrorCode_InternalError); | |
| 1095 } | |
| 1096 else | |
| 1097 { | |
| 1098 const std::string year = path.substr(0, 4); | |
| 1099 const std::string month = path.substr(5, 2); | |
| 1100 return new ListOfStudiesByDate(context_, year, month, templates_); | |
| 1101 } | |
| 1102 } | |
| 1103 | |
| 1104 public: | |
| 1105 ListOfStudiesByMonth(ServerContext& context, | |
| 1106 const std::string& year, | |
| 1107 const Templates& templates) : | |
| 1108 context_(context), | |
| 1109 year_(year), | |
| 1110 templates_(templates) | |
| 1111 { | |
| 1112 if (year_.size() != 4) | |
| 1113 { | |
| 1114 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 1115 } | |
| 1116 } | |
| 1117 }; | |
| 1118 | |
| 1119 | |
| 1120 class OrthancWebDav::ListOfStudiesByYear : public InternalNode | |
| 1121 { | |
| 1122 private: | |
| 1123 ServerContext& context_; | |
| 1124 const Templates& templates_; | |
| 1125 | |
| 1126 protected: | |
| 1127 virtual void Refresh() ORTHANC_OVERRIDE | |
| 1128 { | |
| 1129 } | |
| 1130 | |
| 1131 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE | |
| 1132 { | |
| 1133 std::list<std::string> resources; | |
| 1134 context_.GetIndex().GetAllUuids(resources, ResourceType_Study); | |
| 1135 | |
| 1136 std::set<std::string> years; | |
| 1137 | |
| 1138 for (std::list<std::string>::const_iterator it = resources.begin(); it != resources.end(); ++it) | |
| 1139 { | |
| 1140 DicomMap tags; | |
| 1141 std::string studyDate; | |
| 1142 if (context_.GetIndex().GetMainDicomTags(tags, *it, ResourceType_Study, ResourceType_Study) && | |
| 1143 tags.LookupStringValue(studyDate, DICOM_TAG_STUDY_DATE, false) && | |
| 1144 studyDate.size() == 8) | |
| 1145 { | |
| 1146 years.insert(studyDate.substr(0, 4)); // Get the year from "YYYYMMDD" | |
| 1147 } | |
| 1148 } | |
| 1149 | |
| 1150 for (std::set<std::string>::const_iterator it = years.begin(); it != years.end(); ++it) | |
| 1151 { | |
| 1152 target.AddResource(new IWebDavBucket::Folder(*it)); | |
| 1153 } | |
| 1154 | |
| 1155 return true; | |
| 1156 } | |
| 1157 | |
|
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1158 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE |
| 4240 | 1159 { |
| 1160 return new ListOfStudiesByMonth(context_, path, templates_); | |
| 1161 } | |
| 1162 | |
| 1163 public: | |
| 1164 ListOfStudiesByYear(ServerContext& context, | |
| 1165 const Templates& templates) : | |
| 1166 context_(context), | |
| 1167 templates_(templates) | |
| 1168 { | |
| 1169 } | |
| 1170 }; | |
| 1171 | |
| 1172 | |
|
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1173 class OrthancWebDav::DicomDeleteVisitor : public ServerContext::ILookupVisitor |
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1174 { |
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1175 private: |
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1176 ServerContext& context_; |
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1177 ResourceType level_; |
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1178 |
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1179 public: |
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1180 DicomDeleteVisitor(ServerContext& context, |
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1181 ResourceType level) : |
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1182 context_(context), |
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1183 level_(level) |
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1184 { |
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1185 } |
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1186 |
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1187 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE |
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1188 { |
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1189 return false; // (*) |
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1190 } |
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1191 |
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1192 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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1193 { |
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1194 } |
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1195 |
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1196 virtual void Visit(const std::string& publicId, |
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1197 const std::string& instanceId /* unused */, |
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1198 const DicomMap& mainDicomTags /* unused */, |
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1199 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE |
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1200 { |
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1201 Json::Value info; |
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1202 context_.DeleteResource(info, publicId, level_); |
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1203 } |
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1204 }; |
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1205 |
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1206 |
| 4240 | 1207 void OrthancWebDav::AddVirtualFile(Collection& collection, |
| 1208 const UriComponents& path, | |
| 1209 const std::string& filename) | |
| 1210 { | |
| 1211 MimeType mime; | |
| 1212 std::string content; | |
| 4246 | 1213 boost::posix_time::ptime modification; // Unused, let the date be set to "GetNow()" |
| 4240 | 1214 |
| 1215 UriComponents p = path; | |
| 1216 p.push_back(filename); | |
| 1217 | |
| 1218 if (GetFileContent(mime, content, modification, p)) | |
| 1219 { | |
| 1220 std::unique_ptr<File> f(new File(filename)); | |
| 1221 f->SetMimeType(mime); | |
| 1222 f->SetContentLength(content.size()); | |
| 1223 collection.AddResource(f.release()); | |
| 1224 } | |
| 1225 } | |
| 1226 | |
| 1227 | |
| 1228 void OrthancWebDav::UploadWorker(OrthancWebDav* that) | |
| 1229 { | |
| 1230 assert(that != NULL); | |
| 1231 | |
| 1232 boost::posix_time::ptime lastModification = GetNow(); | |
| 1233 | |
|
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1234 while (that->uploadRunning_) |
| 4240 | 1235 { |
| 1236 std::unique_ptr<IDynamicObject> obj(that->uploadQueue_.Dequeue(100)); | |
| 1237 if (obj.get() != NULL) | |
| 1238 { | |
| 1239 that->Upload(reinterpret_cast<const SingleValueObject<std::string>&>(*obj).GetValue()); | |
| 1240 lastModification = GetNow(); | |
| 1241 } | |
|
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1242 else if (GetNow() - lastModification > boost::posix_time::seconds(30)) |
| 4240 | 1243 { |
|
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1244 /** |
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1245 * After every 30 seconds of inactivity, remove the empty |
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1246 * folders. This delay is needed to avoid removing |
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1247 * just-created folders before the remote WebDAV has time to |
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1248 * write files into it. |
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1249 **/ |
|
4268
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1250 LOG(TRACE) << "Cleaning up the empty WebDAV upload folders"; |
| 4240 | 1251 that->uploads_.RemoveEmptyFolders(); |
| 1252 lastModification = GetNow(); | |
| 1253 } | |
| 1254 } | |
| 1255 } | |
| 1256 | |
| 1257 | |
| 1258 void OrthancWebDav::Upload(const std::string& path) | |
| 1259 { | |
| 1260 UriComponents uri; | |
| 1261 Toolbox::SplitUriComponents(uri, path); | |
| 1262 | |
| 1263 LOG(INFO) << "Upload from WebDAV: " << path; | |
| 1264 | |
| 1265 MimeType mime; | |
| 1266 std::string content; | |
| 1267 boost::posix_time::ptime time; | |
| 1268 if (uploads_.GetFileContent(mime, content, time, uri)) | |
| 1269 { | |
|
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1270 bool success = false; |
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1271 |
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1272 if (ZipReader::IsZipMemoryBuffer(content)) |
| 4240 | 1273 { |
|
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1274 // New in Orthanc 1.8.2 |
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1275 std::unique_ptr<ZipReader> reader(ZipReader::CreateFromMemory(content)); |
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1276 |
| 4386 | 1277 std::string filename, uncompressedFile; |
| 1278 while (reader->ReadNextFile(filename, uncompressedFile)) | |
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1279 { |
| 4386 | 1280 if (!uncompressedFile.empty()) |
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1281 { |
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1282 LOG(INFO) << "Uploading DICOM file extracted from a ZIP archive in WebDAV: " << filename; |
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1283 |
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1284 DicomInstanceToStore instance; |
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1285 instance.SetOrigin(DicomInstanceOrigin::FromWebDav()); |
| 4386 | 1286 instance.SetBuffer(uncompressedFile.c_str(), uncompressedFile.size()); |
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1287 |
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1288 std::string publicId; |
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1289 |
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|
1290 try |
|
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1291 { |
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1292 context_.Store(publicId, instance, StoreInstanceMode_Default); |
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1293 } |
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1294 catch (OrthancException& e) |
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1295 { |
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1296 if (e.GetErrorCode() == ErrorCode_BadFileFormat) |
|
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1297 { |
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1298 LOG(ERROR) << "Cannot import non-DICOM file from ZIP archive: " << filename; |
|
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|
1299 } |
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1300 } |
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1301 } |
|
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1302 } |
|
4358
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1303 |
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1304 success = true; |
| 4240 | 1305 } |
|
4358
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1306 else |
| 4240 | 1307 { |
|
4358
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1308 DicomInstanceToStore instance; |
|
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1309 instance.SetOrigin(DicomInstanceOrigin::FromWebDav()); |
|
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1310 instance.SetBuffer(content.c_str(), content.size()); |
|
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1311 |
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1312 try |
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1313 { |
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1314 std::string publicId; |
|
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1315 StoreStatus status = context_.Store(publicId, instance, StoreInstanceMode_Default); |
|
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1316 if (status == StoreStatus_Success || |
|
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1317 status == StoreStatus_AlreadyStored) |
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1318 { |
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1319 LOG(INFO) << "Successfully imported DICOM instance from WebDAV: " |
|
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1320 << path << " (Orthanc ID: " << publicId << ")"; |
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1321 success = true; |
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1322 } |
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1323 } |
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1324 catch (OrthancException& e) |
|
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1325 { |
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1326 } |
|
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1327 } |
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1328 |
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1329 uploads_.DeleteItem(uri); |
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1330 |
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1331 if (!success) |
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1332 { |
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1333 LOG(WARNING) << "Cannot import DICOM instance from WebWAV (maybe not a DICOM file): " << path; |
| 4240 | 1334 } |
| 1335 } | |
| 1336 } | |
| 1337 | |
| 1338 | |
|
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1339 OrthancWebDav::INode& OrthancWebDav::GetRootNode(const std::string& rootPath) |
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1340 { |
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1341 if (rootPath == BY_PATIENTS) |
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1342 { |
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1343 return *patients_; |
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1344 } |
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1345 else if (rootPath == BY_STUDIES) |
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1346 { |
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1347 return *studies_; |
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1348 } |
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1349 else if (rootPath == BY_DATES) |
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1350 { |
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1351 return *dates_; |
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1352 } |
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1353 else |
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1354 { |
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1355 throw OrthancException(ErrorCode_InternalError); |
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1356 } |
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1357 } |
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1358 |
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1359 |
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1360 OrthancWebDav::OrthancWebDav(ServerContext& context, |
|
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1361 bool allowDicomDelete, |
|
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|
1362 bool allowUpload) : |
| 4240 | 1363 context_(context), |
|
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|
1364 allowDicomDelete_(allowDicomDelete), |
|
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|
1365 allowUpload_(allowUpload), |
| 4240 | 1366 uploads_(false /* store uploads as temporary files */), |
|
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1367 uploadRunning_(false) |
| 4240 | 1368 { |
| 1369 patientsTemplates_[ResourceType_Patient] = "{{PatientID}} - {{PatientName}}"; | |
| 1370 patientsTemplates_[ResourceType_Study] = "{{StudyDate}} - {{StudyDescription}}"; | |
| 1371 patientsTemplates_[ResourceType_Series] = "{{Modality}} - {{SeriesDescription}}"; | |
| 1372 | |
| 1373 studiesTemplates_[ResourceType_Study] = "{{PatientID}} - {{PatientName}} - {{StudyDescription}}"; | |
| 1374 studiesTemplates_[ResourceType_Series] = patientsTemplates_[ResourceType_Series]; | |
| 1375 | |
| 1376 patients_.reset(new RootNode(context, ResourceType_Patient, patientsTemplates_)); | |
| 1377 studies_.reset(new RootNode(context, ResourceType_Study, studiesTemplates_)); | |
| 1378 dates_.reset(new ListOfStudiesByYear(context, studiesTemplates_)); | |
| 1379 } | |
| 1380 | |
| 1381 | |
| 1382 bool OrthancWebDav::IsExistingFolder(const UriComponents& path) | |
| 1383 { | |
| 1384 if (path.empty()) | |
| 1385 { | |
| 1386 return true; | |
| 1387 } | |
| 1388 else if (path[0] == BY_UIDS) | |
| 1389 { | |
| 1390 return (path.size() <= 3 && | |
|
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1391 (path.size() != 3 || path[2] != STUDY_INFO)); |
| 4240 | 1392 } |
|
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|
1393 else if (path[0] == BY_PATIENTS || |
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|
1394 path[0] == BY_STUDIES || |
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|
1395 path[0] == BY_DATES) |
| 4240 | 1396 { |
| 4252 | 1397 IWebDavBucket::Collection collection; |
| 1398 return GetRootNode(path[0]).ListCollection(collection, UriComponents(path.begin() + 1, path.end())); | |
| 4240 | 1399 } |
|
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1400 else if (allowUpload_ && |
|
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1401 path[0] == UPLOADS) |
| 4240 | 1402 { |
| 1403 return uploads_.IsExistingFolder(UriComponents(path.begin() + 1, path.end())); | |
| 1404 } | |
| 1405 else | |
| 1406 { | |
| 1407 return false; | |
| 1408 } | |
| 1409 } | |
| 1410 | |
| 1411 | |
| 1412 bool OrthancWebDav::ListCollection(Collection& collection, | |
| 1413 const UriComponents& path) | |
| 1414 { | |
| 1415 if (path.empty()) | |
| 1416 { | |
| 4241 | 1417 collection.AddResource(new Folder(BY_DATES)); |
| 4240 | 1418 collection.AddResource(new Folder(BY_PATIENTS)); |
| 1419 collection.AddResource(new Folder(BY_STUDIES)); | |
| 1420 collection.AddResource(new Folder(BY_UIDS)); | |
|
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1421 |
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1422 if (allowUpload_) |
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1423 { |
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1424 collection.AddResource(new Folder(UPLOADS)); |
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1425 } |
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1426 |
| 4240 | 1427 return true; |
| 1428 } | |
| 1429 else if (path[0] == BY_UIDS) | |
| 1430 { | |
| 1431 DatabaseLookup query; | |
| 1432 ResourceType level; | |
| 1433 size_t limit = 0; // By default, no limits | |
| 1434 | |
| 1435 if (path.size() == 1) | |
| 1436 { | |
| 1437 level = ResourceType_Study; | |
|
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1438 limit = 0; // TODO - Should we limit here? |
| 4240 | 1439 } |
| 1440 else if (path.size() == 2) | |
| 1441 { | |
|
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|
1442 AddVirtualFile(collection, path, STUDY_INFO); |
| 4240 | 1443 |
| 1444 level = ResourceType_Series; | |
| 1445 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1446 true /* case sensitive */, true /* mandatory tag */); | |
| 1447 } | |
| 1448 else if (path.size() == 3) | |
| 1449 { | |
|
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|
1450 AddVirtualFile(collection, path, SERIES_INFO); |
| 4240 | 1451 |
| 1452 level = ResourceType_Instance; | |
| 1453 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1454 true /* case sensitive */, true /* mandatory tag */); | |
| 1455 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1456 true /* case sensitive */, true /* mandatory tag */); | |
| 1457 } | |
| 1458 else | |
| 1459 { | |
| 1460 return false; | |
| 1461 } | |
| 1462 | |
| 1463 DicomIdentifiersVisitor visitor(context_, collection, level); | |
| 1464 context_.Apply(visitor, query, level, 0 /* since */, limit); | |
| 1465 | |
| 1466 return true; | |
| 1467 } | |
|
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1468 else if (path[0] == BY_PATIENTS || |
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|
1469 path[0] == BY_STUDIES || |
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|
1470 path[0] == BY_DATES) |
| 4240 | 1471 { |
|
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|
1472 return GetRootNode(path[0]).ListCollection(collection, UriComponents(path.begin() + 1, path.end())); |
| 4240 | 1473 } |
|
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1474 else if (allowUpload_ && |
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1475 path[0] == UPLOADS) |
| 4240 | 1476 { |
| 1477 return uploads_.ListCollection(collection, UriComponents(path.begin() + 1, path.end())); | |
| 1478 } | |
| 1479 else | |
| 1480 { | |
| 1481 return false; | |
| 1482 } | |
| 1483 } | |
| 1484 | |
| 1485 | |
| 1486 bool OrthancWebDav::GetFileContent(MimeType& mime, | |
| 1487 std::string& content, | |
| 1488 boost::posix_time::ptime& modificationTime, | |
| 1489 const UriComponents& path) | |
| 1490 { | |
| 1491 if (path.empty()) | |
| 1492 { | |
| 1493 return false; | |
| 1494 } | |
| 1495 else if (path[0] == BY_UIDS) | |
| 1496 { | |
| 1497 if (path.size() == 3 && | |
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1498 path[2] == STUDY_INFO) |
| 4240 | 1499 { |
| 1500 DatabaseLookup query; | |
| 1501 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1502 true /* case sensitive */, true /* mandatory tag */); | |
| 1503 | |
| 1504 OrthancJsonVisitor visitor(context_, content, ResourceType_Study); | |
| 1505 context_.Apply(visitor, query, ResourceType_Study, 0 /* since */, 0 /* no limit */); | |
| 1506 | |
| 1507 mime = MimeType_Json; | |
| 1508 return visitor.IsSuccess(); | |
| 1509 } | |
| 1510 else if (path.size() == 4 && | |
|
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1511 path[3] == SERIES_INFO) |
| 4240 | 1512 { |
| 1513 DatabaseLookup query; | |
| 1514 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1515 true /* case sensitive */, true /* mandatory tag */); | |
| 1516 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1517 true /* case sensitive */, true /* mandatory tag */); | |
| 1518 | |
| 1519 OrthancJsonVisitor visitor(context_, content, ResourceType_Series); | |
| 1520 context_.Apply(visitor, query, ResourceType_Series, 0 /* since */, 0 /* no limit */); | |
| 1521 | |
| 1522 mime = MimeType_Json; | |
| 1523 return visitor.IsSuccess(); | |
| 1524 } | |
| 1525 else if (path.size() == 4 && | |
| 1526 boost::ends_with(path[3], ".dcm")) | |
| 1527 { | |
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1528 const std::string sopInstanceUid = path[3].substr(0, path[3].size() - 4); |
| 4240 | 1529 |
| 1530 DatabaseLookup query; | |
| 1531 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1532 true /* case sensitive */, true /* mandatory tag */); | |
| 1533 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1534 true /* case sensitive */, true /* mandatory tag */); | |
| 1535 query.AddRestConstraint(DICOM_TAG_SOP_INSTANCE_UID, sopInstanceUid, | |
| 1536 true /* case sensitive */, true /* mandatory tag */); | |
| 1537 | |
| 1538 DicomFileVisitor visitor(context_, content, modificationTime); | |
| 1539 context_.Apply(visitor, query, ResourceType_Instance, 0 /* since */, 0 /* no limit */); | |
| 1540 | |
| 1541 mime = MimeType_Dicom; | |
| 1542 return visitor.IsSuccess(); | |
| 1543 } | |
| 1544 else | |
| 1545 { | |
| 1546 return false; | |
| 1547 } | |
| 1548 } | |
|
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1549 else if (path[0] == BY_PATIENTS || |
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1550 path[0] == BY_STUDIES || |
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1551 path[0] == BY_DATES) |
| 4240 | 1552 { |
|
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1553 return GetRootNode(path[0]).GetFileContent(mime, content, modificationTime, UriComponents(path.begin() + 1, path.end())); |
| 4241 | 1554 } |
|
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1555 else if (allowUpload_ && |
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|
1556 path[0] == UPLOADS) |
| 4240 | 1557 { |
| 1558 return uploads_.GetFileContent(mime, content, modificationTime, UriComponents(path.begin() + 1, path.end())); | |
| 1559 } | |
| 1560 else | |
| 1561 { | |
| 1562 return false; | |
| 1563 } | |
| 1564 } | |
| 1565 | |
| 1566 | |
| 1567 bool OrthancWebDav::StoreFile(const std::string& content, | |
| 1568 const UriComponents& path) | |
| 1569 { | |
|
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1570 if (allowUpload_ && |
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|
1571 path.size() >= 1 && |
| 4240 | 1572 path[0] == UPLOADS) |
| 1573 { | |
| 1574 UriComponents subpath(UriComponents(path.begin() + 1, path.end())); | |
| 1575 | |
| 1576 if (uploads_.StoreFile(content, subpath)) | |
| 1577 { | |
| 1578 if (!content.empty()) | |
| 1579 { | |
| 1580 uploadQueue_.Enqueue(new SingleValueObject<std::string>(Toolbox::FlattenUri(subpath))); | |
| 1581 } | |
| 1582 return true; | |
| 1583 } | |
| 1584 else | |
| 1585 { | |
| 1586 return false; | |
| 1587 } | |
| 1588 } | |
| 1589 else | |
| 1590 { | |
| 1591 return false; | |
| 1592 } | |
| 1593 } | |
| 1594 | |
| 1595 | |
| 1596 bool OrthancWebDav::CreateFolder(const UriComponents& path) | |
| 1597 { | |
|
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1598 if (allowUpload_ && |
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|
1599 path.size() >= 1 && |
| 4240 | 1600 path[0] == UPLOADS) |
| 1601 { | |
| 1602 return uploads_.CreateFolder(UriComponents(path.begin() + 1, path.end())); | |
| 1603 } | |
| 1604 else | |
| 1605 { | |
| 1606 return false; | |
| 1607 } | |
| 1608 } | |
| 1609 | |
| 1610 | |
| 1611 bool OrthancWebDav::DeleteItem(const std::vector<std::string>& path) | |
| 1612 { | |
|
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1613 if (path.empty()) |
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1614 { |
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1615 return false; |
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1616 } |
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1617 else if (path[0] == BY_UIDS && |
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1618 path.size() >= 2 && |
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1619 path.size() <= 4) |
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1620 { |
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1621 if (allowDicomDelete_) |
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|
1622 { |
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|
1623 ResourceType level; |
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|
1624 DatabaseLookup query; |
|
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1625 |
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|
1626 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], |
|
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|
1627 true /* case sensitive */, true /* mandatory tag */); |
|
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|
1628 level = ResourceType_Study; |
|
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|
1629 |
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|
1630 if (path.size() >= 3) |
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|
1631 { |
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|
1632 if (path[2] == STUDY_INFO) |
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|
1633 { |
| 4252 | 1634 return true; // Allow deletion of virtual files (to avoid blocking recursive DELETE) |
|
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|
1635 } |
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|
1636 |
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|
1637 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], |
|
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|
1638 true /* case sensitive */, true /* mandatory tag */); |
|
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|
1639 level = ResourceType_Series; |
|
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|
1640 } |
|
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|
1641 |
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|
1642 if (path.size() == 4) |
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|
1643 { |
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|
1644 if (path[3] == SERIES_INFO) |
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|
1645 { |
| 4252 | 1646 return true; // Allow deletion of virtual files (to avoid blocking recursive DELETE) |
|
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|
1647 } |
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|
1648 else if (boost::ends_with(path[3], ".dcm")) |
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|
1649 { |
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|
1650 const std::string sopInstanceUid = path[3].substr(0, path[3].size() - 4); |
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|
1651 |
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|
1652 query.AddRestConstraint(DICOM_TAG_SOP_INSTANCE_UID, sopInstanceUid, |
|
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|
1653 true /* case sensitive */, true /* mandatory tag */); |
|
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1654 level = ResourceType_Instance; |
|
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1655 } |
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1656 else |
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|
1657 { |
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|
1658 return false; |
|
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|
1659 } |
|
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|
1660 } |
|
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|
1661 |
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|
1662 DicomDeleteVisitor visitor(context_, level); |
| 4252 | 1663 context_.Apply(visitor, query, level, 0 /* since */, 0 /* no limit */); |
|
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1664 return true; |
|
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|
1665 } |
|
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|
1666 else |
|
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|
1667 { |
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1668 return false; // read-only |
|
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|
1669 } |
|
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|
1670 } |
|
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|
1671 else if (path[0] == BY_PATIENTS || |
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|
1672 path[0] == BY_STUDIES || |
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|
1673 path[0] == BY_DATES) |
|
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|
1674 { |
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|
1675 if (allowDicomDelete_) |
|
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|
1676 { |
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|
1677 return GetRootNode(path[0]).DeleteItem(UriComponents(path.begin() + 1, path.end())); |
|
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|
1678 } |
|
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|
1679 else |
|
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|
1680 { |
|
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|
1681 return false; // read-only |
|
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|
1682 } |
|
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1683 } |
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1684 else if (allowUpload_ && |
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1685 path[0] == UPLOADS) |
| 4240 | 1686 { |
| 1687 return uploads_.DeleteItem(UriComponents(path.begin() + 1, path.end())); | |
| 1688 } | |
| 1689 else | |
| 1690 { | |
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1691 return false; |
| 4240 | 1692 } |
| 1693 } | |
| 1694 | |
| 1695 | |
| 1696 void OrthancWebDav::Start() | |
| 1697 { | |
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1698 if (uploadRunning_) |
| 4240 | 1699 { |
| 1700 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 1701 } | |
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parents:
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1702 else if (allowUpload_) |
| 4240 | 1703 { |
| 1704 LOG(INFO) << "Starting the WebDAV upload thread"; | |
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parents:
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1705 uploadRunning_ = true; |
| 4240 | 1706 uploadThread_ = boost::thread(UploadWorker, this); |
| 1707 } | |
| 1708 } | |
| 1709 | |
| 1710 | |
| 1711 void OrthancWebDav::Stop() | |
| 1712 { | |
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parents:
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1713 if (uploadRunning_) |
| 4240 | 1714 { |
| 1715 LOG(INFO) << "Stopping the WebDAV upload thread"; | |
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parents:
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1716 uploadRunning_ = false; |
| 4240 | 1717 if (uploadThread_.joinable()) |
| 1718 { | |
| 1719 uploadThread_.join(); | |
| 1720 } | |
| 1721 } | |
| 1722 } | |
| 1723 } |