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annotate OrthancFramework/Sources/Toolbox.h @ 5326:fbe857e942cd

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store metrics as integers instead of floats to avoid precision loss in increments
author Sebastien Jodogne <s.jodogne@gmail.com>
date Sun, 25 Jun 2023 18:28:49 +0200
parents 0ea402b4d901
children 123a94dd57df
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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24 #pragma once
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25
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26 #include "Enumerations.h"
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27 #include "OrthancFramework.h"
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28
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29 #include <stdint.h>
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30 #include <vector>
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31 #include <string>
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32 #include <json/value.h>
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35 #if !defined(ORTHANC_ENABLE_BASE64)
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36 # error The macro ORTHANC_ENABLE_BASE64 must be defined
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37 #endif
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38
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39 #if !defined(ORTHANC_ENABLE_LOCALE)
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40 # error The macro ORTHANC_ENABLE_LOCALE must be defined
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41 #endif
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42
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43 #if !defined(ORTHANC_ENABLE_MD5)
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44 # error The macro ORTHANC_ENABLE_MD5 must be defined
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45 #endif
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47 #if !defined(ORTHANC_ENABLE_PUGIXML)
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48 # error The macro ORTHANC_ENABLE_PUGIXML must be defined
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49 #endif
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51 #if !defined(ORTHANC_ENABLE_SSL)
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52 # error The macro ORTHANC_ENABLE_SSL must be defined
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53 #endif
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55
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56 /**
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57 * NOTE: GUID vs. UUID
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58 * The simple answer is: no difference, they are the same thing. Treat
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59 * them as a 16 byte (128 bits) value that is used as a unique
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60 * value. In Microsoft-speak they are called GUIDs, but call them
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61 * UUIDs when not using Microsoft-speak.
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62 * http://stackoverflow.com/questions/246930/is-there-any-difference-between-a-guid-and-a-uuid
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63 **/
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64
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65
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66 #if ORTHANC_ENABLE_PUGIXML == 1
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67 # include <pugixml.hpp>
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68 #endif
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71 namespace Orthanc
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72 {
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73 typedef std::vector<std::string> UriComponents;
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74
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75 class NullType
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76 {
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77 };
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78
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79 class ORTHANC_PUBLIC Toolbox
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80 {
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81 public:
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82 class ORTHANC_PUBLIC LinesIterator
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83 {
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84 private:
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85 const std::string& content_;
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86 size_t lineStart_;
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87 size_t lineEnd_;
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88
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89 void FindEndOfLine();
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90
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91 public:
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92 explicit LinesIterator(const std::string& content);
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94 bool GetLine(std::string& target) const;
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95
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96 void Next();
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97 };
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98
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99 static void ToUpperCase(std::string& s); // Inplace version
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100
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101 static void ToLowerCase(std::string& s); // Inplace version
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102
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103 static void ToUpperCase(std::string& result,
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104 const std::string& source);
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105
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106 static void ToLowerCase(std::string& result,
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107 const std::string& source);
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108
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109 static void SplitUriComponents(UriComponents& components,
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110 const std::string& uri);
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111
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112 static void TruncateUri(UriComponents& target,
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113 const UriComponents& source,
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114 size_t fromLevel);
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115
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116 static bool IsChildUri(const UriComponents& baseUri,
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117 const UriComponents& testedUri);
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118
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119 static std::string FlattenUri(const UriComponents& components,
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120 size_t fromLevel = 0);
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121
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122 static std::string JoinUri(const std::string& base, const std::string& uri);
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123
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124 #if ORTHANC_ENABLE_MD5 == 1
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125 static void ComputeMD5(std::string& result,
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126 const std::string& data);
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127
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128 static void ComputeMD5(std::string& result,
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129 const void* data,
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130 size_t size);
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131 #endif
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132
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133 static void ComputeSHA1(std::string& result,
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134 const std::string& data);
177
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135
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136 static void ComputeSHA1(std::string& result,
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137 const void* data,
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138 size_t size);
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139
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140 static bool IsSHA1(const void* str,
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141 size_t size);
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8dc80ba768aa refactoring: IHttpHandler does not use std::string to hold the request body
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142
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143 static bool IsSHA1(const std::string& s);
402
d2c69150a979 bulk storescu
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144
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145 #if ORTHANC_ENABLE_BASE64 == 1
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146 static void DecodeBase64(std::string& result,
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147 const std::string& data);
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148
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149 static void EncodeBase64(std::string& result,
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150 const std::string& data);
1648
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151
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152 static bool DecodeDataUriScheme(std::string& mime,
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153 std::string& content,
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154 const std::string& source);
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155
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156 static void EncodeDataUriScheme(std::string& result,
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157 const std::string& mime,
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158 const std::string& content);
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159 #endif
87
8517e2c44283 path to configuration
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160
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161 #if ORTHANC_ENABLE_LOCALE == 1
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162 static std::string ConvertToUtf8(const std::string& source,
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163 Encoding sourceEncoding,
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164 bool hasCodeExtensions);
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ad1e127b4ed5 fix in encodings
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165
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166 static std::string ConvertFromUtf8(const std::string& source,
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167 Encoding targetEncoding);
2367
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diff changeset
168 #endif
107
3b45473c0a73 replace boost::locale with iconv for debian
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169
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170 static bool IsAsciiString(const void* data,
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171 size_t size);
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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172
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173 static bool IsAsciiString(const std::string& s);
2442
330349d712f9 fix Toolbox::IsAsciiString
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174
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diff changeset
175 static std::string ConvertToAscii(const std::string& source);
187
8e673a65564d refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 177
diff changeset
176
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diff changeset
177 static std::string StripSpaces(const std::string& source);
247
c9b3ba0fd140 path management in zip files
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diff changeset
178
336
3c291753231f url decode
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diff changeset
179 // In-place percent-decoding for URL
3991
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180 static void UrlDecode(std::string& s);
453
30086c1aca30 endianness
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
181
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182 static Endianness DetectEndianness();
608
0bedf8ff9288 basic find scp
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183
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184 static std::string WildcardToRegularExpression(const std::string& s);
608
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
185
3991
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diff changeset
186 static void TokenizeString(std::vector<std::string>& result,
5d2348b39392 turning toolbox namespaces into classes to control visibility in shared libraries
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diff changeset
187 const std::string& source,
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parents: 3990
diff changeset
188 char separator);
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 707
diff changeset
189
4938
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Alain Mazy <am@osimis.io>
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diff changeset
190 static void JoinStrings(std::string& result,
5167
de7a639c5ad2 fix constness
Alain Mazy <am@osimis.io>
parents: 5143
diff changeset
191 const std::set<std::string>& source,
4938
f630796a59b1 ExpandResource now able to return computed tags (like ModalitiesInStudies)
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diff changeset
192 const char* separator);
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diff changeset
193
f630796a59b1 ExpandResource now able to return computed tags (like ModalitiesInStudies)
Alain Mazy <am@osimis.io>
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diff changeset
194 static void JoinStrings(std::string& result,
5167
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Alain Mazy <am@osimis.io>
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diff changeset
195 const std::vector<std::string>& source,
4938
f630796a59b1 ExpandResource now able to return computed tags (like ModalitiesInStudies)
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diff changeset
196 const char* separator);
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diff changeset
197
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diff changeset
198 // returns true if all element of 'needles' are found in 'haystack'
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
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diff changeset
199 template <typename T> static bool IsSetInSet(const std::set<T>& needles, const std::set<T>& haystack)
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
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diff changeset
200 {
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
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parents: 4870
diff changeset
201 for (typename std::set<T>::const_iterator it = needles.begin();
4981
d0c34145320c cppcheck
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parents: 4941
diff changeset
202 it != needles.end(); ++it)
4936
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
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parents: 4870
diff changeset
203 {
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
204 if (haystack.count(*it) == 0)
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
205 {
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
206 return false;
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
207 }
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
208 }
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
209
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
210 return true;
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
211 }
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
212
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
213 // returns the set of elements from 'needles' that are not in 'haystack'
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
214 template <typename T> static size_t GetMissingsFromSet(std::set<T>& missings, const std::set<T>& needles, const std::set<T>& haystack)
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
215 {
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
216 missings.clear();
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
217
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
218 for (typename std::set<T>::const_iterator it = needles.begin();
4981
d0c34145320c cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4941
diff changeset
219 it != needles.end(); ++it)
4936
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
220 {
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
221 if (haystack.count(*it) == 0)
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
222 {
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
223 missings.insert(*it);
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
224 }
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
225 }
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
226
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
227 return missings.size();
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
228 }
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
229
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
230 template <typename T> static void AppendSets(std::set<T>& target, const std::set<T>& toAppend)
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
231 {
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
232 for (typename std::set<T>::const_iterator it = toAppend.begin();
4981
d0c34145320c cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4941
diff changeset
233 it != toAppend.end(); ++it)
4936
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
234 {
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
235 target.insert(*it);
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
236 }
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
237 }
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
238
4941
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4938
diff changeset
239 template <typename T> static void RemoveSets(std::set<T>& target, const std::set<T>& toRemove)
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4938
diff changeset
240 {
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4938
diff changeset
241 for (typename std::set<T>::const_iterator it = toRemove.begin();
4981
d0c34145320c cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4941
diff changeset
242 it != toRemove.end(); ++it)
4941
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4938
diff changeset
243 {
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4938
diff changeset
244 target.erase(*it);
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4938
diff changeset
245 }
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4938
diff changeset
246 }
4936
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
247
2136
dd609a99d39a uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
248 #if ORTHANC_ENABLE_PUGIXML == 1
3991
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diff changeset
249 static void JsonToXml(std::string& target,
5d2348b39392 turning toolbox namespaces into classes to control visibility in shared libraries
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parents: 3990
diff changeset
250 const Json::Value& source,
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parents: 3990
diff changeset
251 const std::string& rootElement = "root",
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252 const std::string& arrayElement = "item");
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253 #endif
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254
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255 #if ORTHANC_ENABLE_PUGIXML == 1
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256 static void XmlToString(std::string& target,
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257 const pugi::xml_document& source);
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258 #endif
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259
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260 static bool IsInteger(const std::string& str);
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261
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262 static void CopyJsonWithoutComments(Json::Value& target,
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263 const Json::Value& source);
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264
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265 static bool StartsWith(const std::string& str,
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266 const std::string& prefix);
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267
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268 static void UriEncode(std::string& target,
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269 const std::string& source);
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270
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271 static std::string GetJsonStringField(const ::Json::Value& json,
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272 const std::string& key,
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273 const std::string& defaultValue);
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274
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275 static bool GetJsonBooleanField(const ::Json::Value& json,
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276 const std::string& key,
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277 bool defaultValue);
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278
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279 static int GetJsonIntegerField(const ::Json::Value& json,
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280 const std::string& key,
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281 int defaultValue);
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282
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283 static unsigned int GetJsonUnsignedIntegerField(const ::Json::Value& json,
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284 const std::string& key,
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285 unsigned int defaultValue);
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286
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287 static bool IsUuid(const std::string& str);
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288
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289 static bool StartsWithUuid(const std::string& str);
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290
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291 #if ORTHANC_ENABLE_LOCALE == 1
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292 static void InitializeGlobalLocale(const char* locale);
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293
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294 static void FinalizeGlobalLocale();
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295
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296 static std::string ToUpperCaseWithAccents(const std::string& source);
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297 #endif
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298
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299 static void InitializeOpenSsl();
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300
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301 static void FinalizeOpenSsl();
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302
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303 static std::string GenerateUuid();
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304
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305 static std::string SubstituteVariables(const std::string& source,
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306 const std::map<std::string, std::string>& dictionary);
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307
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308 static void RemoveIso2022EscapeSequences(std::string& dest,
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309 const std::string& src);
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310
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311 static void Utf8ToUnicodeCharacter(uint32_t& unicode,
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312 size_t& utf8Length,
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313 const std::string& utf8,
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314 size_t position);
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315
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316 static std::string LargeHexadecimalToDecimal(const std::string& hex);
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317
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318 // http://dicom.nema.org/medical/dicom/2019a/output/chtml/part05/sect_B.2.html
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319 static std::string GenerateDicomPrivateUniqueIdentifier();
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320
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321 static void SimplifyDicomAsJson(Json::Value& target,
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322 const Json::Value& source,
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323 DicomToJsonFormat format);
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324
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325 static bool ReadJson(Json::Value& target,
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326 const std::string& source);
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327
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328 static bool ReadJson(Json::Value& target,
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329 const void* buffer,
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330 size_t size);
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331
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332 static bool ReadJsonWithoutComments(Json::Value& target,
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333 const std::string& source);
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334
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335 static bool ReadJsonWithoutComments(Json::Value& target,
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336 const void* buffer,
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337 size_t size);
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338
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339 static void WriteFastJson(std::string& target,
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340 const Json::Value& source);
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341
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342 static void WriteStyledJson(std::string& target,
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343 const Json::Value& source);
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344
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345 static void RemoveSurroundingQuotes(std::string& value);
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346 };
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347 }
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348
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349
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350
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351
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352 /**
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353 * The plain C, opaque data structure "OrthancLinesIterator" is a thin
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354 * wrapper around Orthanc::Toolbox::LinesIterator, and is only used by
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355 * "../Resources/Patches/dcmtk-dcdict_orthanc.cc", in order to avoid
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356 * code duplication
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357 **/
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358
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359 struct OrthancLinesIterator;
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360
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361 OrthancLinesIterator* OrthancLinesIterator_Create(const std::string& content);
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362
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363 bool OrthancLinesIterator_GetLine(std::string& target,
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364 const OrthancLinesIterator* iterator);
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365
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366 void OrthancLinesIterator_Next(OrthancLinesIterator* iterator);
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367
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368 void OrthancLinesIterator_Free(OrthancLinesIterator* iterator);