Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancWebDav.cpp @ 4582:fb0379abb4a7 db-changes
assume that "GetDatabaseVersion()" can run out of a database transaction
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 09 Mar 2021 15:25:17 +0100 |
| parents | efd90f778cd2 |
| children | 94147ce2f097 |
| rev | line source |
|---|---|
| 4240 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 4240 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #include "OrthancWebDav.h" | |
| 35 | |
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36 #include "../../OrthancFramework/Sources/Compression/ZipReader.h" |
| 4240 | 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
| 38 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
| 39 #include "../../OrthancFramework/Sources/HttpServer/WebDavStorage.h" | |
| 4304 | 40 #include "../../OrthancFramework/Sources/Logging.h" |
| 4240 | 41 #include "Search/DatabaseLookup.h" |
| 42 #include "ServerContext.h" | |
| 43 | |
| 44 #include <boost/regex.hpp> | |
| 45 #include <boost/algorithm/string/predicate.hpp> | |
| 46 | |
| 47 | |
| 48 static const char* const BY_PATIENTS = "by-patients"; | |
| 49 static const char* const BY_STUDIES = "by-studies"; | |
| 4241 | 50 static const char* const BY_DATES = "by-dates"; |
| 4240 | 51 static const char* const BY_UIDS = "by-uids"; |
| 52 static const char* const UPLOADS = "uploads"; | |
| 53 static const char* const MAIN_DICOM_TAGS = "MainDicomTags"; | |
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54 static const char* const STUDY_INFO = "study.json"; |
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55 static const char* const SERIES_INFO = "series.json"; |
| 4240 | 56 |
| 57 | |
| 58 namespace Orthanc | |
| 59 { | |
| 60 static boost::posix_time::ptime GetNow() | |
| 61 { | |
| 62 return boost::posix_time::second_clock::universal_time(); | |
| 63 } | |
| 64 | |
| 65 | |
| 66 static void LookupTime(boost::posix_time::ptime& target, | |
| 67 ServerContext& context, | |
| 68 const std::string& publicId, | |
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69 ResourceType level, |
| 4240 | 70 MetadataType metadata) |
| 71 { | |
| 72 std::string value; | |
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73 if (context.GetIndex().LookupMetadata(value, publicId, level, metadata)) |
| 4240 | 74 { |
| 75 try | |
| 76 { | |
| 77 target = boost::posix_time::from_iso_string(value); | |
| 78 return; | |
| 79 } | |
| 80 catch (std::exception& e) | |
| 81 { | |
| 82 } | |
| 83 } | |
| 84 | |
| 85 target = GetNow(); | |
| 86 } | |
| 87 | |
| 88 | |
| 89 class OrthancWebDav::DicomIdentifiersVisitor : public ServerContext::ILookupVisitor | |
| 90 { | |
| 91 private: | |
| 92 ServerContext& context_; | |
| 93 bool isComplete_; | |
| 94 Collection& target_; | |
| 95 ResourceType level_; | |
| 96 | |
| 97 public: | |
| 98 DicomIdentifiersVisitor(ServerContext& context, | |
| 99 Collection& target, | |
| 100 ResourceType level) : | |
| 101 context_(context), | |
| 102 isComplete_(false), | |
| 103 target_(target), | |
| 104 level_(level) | |
| 105 { | |
| 106 } | |
| 107 | |
| 108 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 109 { | |
| 110 return false; // (*) | |
| 111 } | |
| 112 | |
| 113 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 114 { | |
| 115 isComplete_ = true; // TODO | |
| 116 } | |
| 117 | |
| 118 virtual void Visit(const std::string& publicId, | |
| 119 const std::string& instanceId /* unused */, | |
| 120 const DicomMap& mainDicomTags, | |
| 121 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 122 { | |
| 123 DicomTag tag(0, 0); | |
| 124 MetadataType timeMetadata; | |
| 125 | |
| 126 switch (level_) | |
| 127 { | |
| 128 case ResourceType_Study: | |
| 129 tag = DICOM_TAG_STUDY_INSTANCE_UID; | |
| 130 timeMetadata = MetadataType_LastUpdate; | |
| 131 break; | |
| 132 | |
| 133 case ResourceType_Series: | |
| 134 tag = DICOM_TAG_SERIES_INSTANCE_UID; | |
| 135 timeMetadata = MetadataType_LastUpdate; | |
| 136 break; | |
| 137 | |
| 138 case ResourceType_Instance: | |
| 139 tag = DICOM_TAG_SOP_INSTANCE_UID; | |
| 140 timeMetadata = MetadataType_Instance_ReceptionDate; | |
| 141 break; | |
| 142 | |
| 143 default: | |
| 144 throw OrthancException(ErrorCode_InternalError); | |
| 145 } | |
| 146 | |
| 147 std::string s; | |
| 148 if (mainDicomTags.LookupStringValue(s, tag, false) && | |
| 149 !s.empty()) | |
| 150 { | |
| 151 std::unique_ptr<Resource> resource; | |
| 152 | |
| 153 if (level_ == ResourceType_Instance) | |
| 154 { | |
| 155 FileInfo info; | |
| 156 if (context_.GetIndex().LookupAttachment(info, publicId, FileContentType_Dicom)) | |
| 157 { | |
| 158 std::unique_ptr<File> f(new File(s + ".dcm")); | |
| 159 f->SetMimeType(MimeType_Dicom); | |
| 160 f->SetContentLength(info.GetUncompressedSize()); | |
| 161 resource.reset(f.release()); | |
| 162 } | |
| 163 } | |
| 164 else | |
| 165 { | |
| 166 resource.reset(new Folder(s)); | |
| 167 } | |
| 168 | |
| 169 if (resource.get() != NULL) | |
| 170 { | |
| 171 boost::posix_time::ptime t; | |
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172 LookupTime(t, context_, publicId, level_, timeMetadata); |
| 4240 | 173 resource->SetCreationTime(t); |
| 174 target_.AddResource(resource.release()); | |
| 175 } | |
| 176 } | |
| 177 } | |
| 178 }; | |
| 179 | |
| 180 | |
| 181 class OrthancWebDav::DicomFileVisitor : public ServerContext::ILookupVisitor | |
| 182 { | |
| 183 private: | |
| 184 ServerContext& context_; | |
| 185 bool success_; | |
| 186 std::string& target_; | |
| 187 boost::posix_time::ptime& time_; | |
| 188 | |
| 189 public: | |
| 190 DicomFileVisitor(ServerContext& context, | |
| 191 std::string& target, | |
| 192 boost::posix_time::ptime& time) : | |
| 193 context_(context), | |
| 194 success_(false), | |
| 195 target_(target), | |
| 196 time_(time) | |
| 197 { | |
| 198 } | |
| 199 | |
| 200 bool IsSuccess() const | |
| 201 { | |
| 202 return success_; | |
| 203 } | |
| 204 | |
| 205 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 206 { | |
| 207 return false; // (*) | |
| 208 } | |
| 209 | |
| 210 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 211 { | |
| 212 } | |
| 213 | |
| 214 virtual void Visit(const std::string& publicId, | |
| 215 const std::string& instanceId /* unused */, | |
| 216 const DicomMap& mainDicomTags, | |
| 217 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 218 { | |
| 219 if (success_) | |
| 220 { | |
| 221 success_ = false; // Two matches => Error | |
| 222 } | |
| 223 else | |
| 224 { | |
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225 LookupTime(time_, context_, publicId, ResourceType_Instance, MetadataType_Instance_ReceptionDate); |
| 4240 | 226 context_.ReadDicom(target_, publicId); |
| 227 success_ = true; | |
| 228 } | |
| 229 } | |
| 230 }; | |
| 231 | |
| 232 | |
| 233 class OrthancWebDav::OrthancJsonVisitor : public ServerContext::ILookupVisitor | |
| 234 { | |
| 235 private: | |
| 236 ServerContext& context_; | |
| 237 bool success_; | |
| 238 std::string& target_; | |
| 239 ResourceType level_; | |
| 240 | |
| 241 public: | |
| 242 OrthancJsonVisitor(ServerContext& context, | |
| 243 std::string& target, | |
| 244 ResourceType level) : | |
| 245 context_(context), | |
| 246 success_(false), | |
| 247 target_(target), | |
| 248 level_(level) | |
| 249 { | |
| 250 } | |
| 251 | |
| 252 bool IsSuccess() const | |
| 253 { | |
| 254 return success_; | |
| 255 } | |
| 256 | |
| 257 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 258 { | |
| 259 return false; // (*) | |
| 260 } | |
| 261 | |
| 262 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 263 { | |
| 264 } | |
| 265 | |
| 266 virtual void Visit(const std::string& publicId, | |
| 267 const std::string& instanceId /* unused */, | |
| 268 const DicomMap& mainDicomTags, | |
| 269 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 270 { | |
| 4554 | 271 Json::Value resource; |
| 272 if (context_.GetIndex().ExpandResource(resource, publicId, level_)) | |
| 4240 | 273 { |
| 274 if (success_) | |
| 275 { | |
| 276 success_ = false; // Two matches => Error | |
| 277 } | |
| 278 else | |
| 279 { | |
| 4554 | 280 target_ = resource.toStyledString(); |
| 4240 | 281 |
| 282 // Replace UNIX newlines with DOS newlines | |
| 283 boost::replace_all(target_, "\n", "\r\n"); | |
| 284 | |
| 285 success_ = true; | |
| 286 } | |
| 287 } | |
| 288 } | |
| 289 }; | |
| 290 | |
| 291 | |
| 292 class OrthancWebDav::ResourcesIndex : public boost::noncopyable | |
| 293 { | |
| 294 public: | |
| 295 typedef std::map<std::string, std::string> Map; | |
| 296 | |
| 297 private: | |
| 298 ServerContext& context_; | |
| 299 ResourceType level_; | |
| 300 std::string template_; | |
| 301 Map pathToResource_; | |
| 302 Map resourceToPath_; | |
| 303 | |
| 304 void CheckInvariants() | |
| 305 { | |
| 306 #ifndef NDEBUG | |
| 307 assert(pathToResource_.size() == resourceToPath_.size()); | |
| 308 | |
| 309 for (Map::const_iterator it = pathToResource_.begin(); it != pathToResource_.end(); ++it) | |
| 310 { | |
| 311 assert(resourceToPath_[it->second] == it->first); | |
| 312 } | |
| 313 | |
| 314 for (Map::const_iterator it = resourceToPath_.begin(); it != resourceToPath_.end(); ++it) | |
| 315 { | |
| 316 assert(pathToResource_[it->second] == it->first); | |
| 317 } | |
| 318 #endif | |
| 319 } | |
| 320 | |
| 321 void AddTags(DicomMap& target, | |
| 322 const std::string& resourceId, | |
| 323 ResourceType tagsFromLevel) | |
| 324 { | |
| 325 DicomMap tags; | |
| 326 if (context_.GetIndex().GetMainDicomTags(tags, resourceId, level_, tagsFromLevel)) | |
| 327 { | |
| 328 target.Merge(tags); | |
| 329 } | |
| 330 } | |
| 331 | |
| 332 void Register(const std::string& resourceId) | |
| 333 { | |
| 334 // Don't register twice the same resource | |
| 335 if (resourceToPath_.find(resourceId) == resourceToPath_.end()) | |
| 336 { | |
| 337 std::string name = template_; | |
| 338 | |
| 339 DicomMap tags; | |
| 340 | |
| 341 AddTags(tags, resourceId, level_); | |
| 342 | |
| 343 if (level_ == ResourceType_Study) | |
| 344 { | |
| 345 AddTags(tags, resourceId, ResourceType_Patient); | |
| 346 } | |
| 347 | |
| 348 DicomArray arr(tags); | |
| 349 for (size_t i = 0; i < arr.GetSize(); i++) | |
| 350 { | |
| 351 const DicomElement& element = arr.GetElement(i); | |
| 352 if (!element.GetValue().IsNull() && | |
| 353 !element.GetValue().IsBinary()) | |
| 354 { | |
| 355 const std::string tag = FromDcmtkBridge::GetTagName(element.GetTag(), ""); | |
| 356 boost::replace_all(name, "{{" + tag + "}}", element.GetValue().GetContent()); | |
| 357 } | |
| 358 } | |
| 359 | |
| 360 // Blank the tags that were not matched | |
| 361 static const boost::regex REGEX_BLANK_TAGS("{{.*?}}"); // non-greedy match | |
| 362 name = boost::regex_replace(name, REGEX_BLANK_TAGS, ""); | |
| 363 | |
| 364 // UTF-8 characters cannot be used on Windows XP | |
| 365 name = Toolbox::ConvertToAscii(name); | |
| 366 boost::replace_all(name, "/", ""); | |
| 367 boost::replace_all(name, "\\", ""); | |
| 368 | |
| 369 // Trim sequences of spaces as one single space | |
| 370 static const boost::regex REGEX_TRIM_SPACES("{{.*?}}"); | |
| 371 name = boost::regex_replace(name, REGEX_TRIM_SPACES, " "); | |
| 372 name = Toolbox::StripSpaces(name); | |
| 373 | |
| 374 size_t count = 0; | |
| 375 for (;;) | |
| 376 { | |
| 377 std::string path = name; | |
| 378 if (count > 0) | |
| 379 { | |
| 380 path += " (" + boost::lexical_cast<std::string>(count) + ")"; | |
| 381 } | |
| 382 | |
| 383 if (pathToResource_.find(path) == pathToResource_.end()) | |
| 384 { | |
| 385 pathToResource_[path] = resourceId; | |
| 386 resourceToPath_[resourceId] = path; | |
| 387 return; | |
| 388 } | |
| 389 | |
| 390 count++; | |
| 391 } | |
| 392 | |
| 393 throw OrthancException(ErrorCode_InternalError); | |
| 394 } | |
| 395 } | |
| 396 | |
| 397 public: | |
| 398 ResourcesIndex(ServerContext& context, | |
| 399 ResourceType level, | |
| 400 const std::string& templateString) : | |
| 401 context_(context), | |
| 402 level_(level), | |
| 403 template_(templateString) | |
| 404 { | |
| 405 } | |
| 406 | |
| 407 ResourceType GetLevel() const | |
| 408 { | |
| 409 return level_; | |
| 410 } | |
| 411 | |
| 412 void Refresh(std::set<std::string>& removedPaths /* out */, | |
| 413 const std::set<std::string>& resources) | |
| 414 { | |
| 415 CheckInvariants(); | |
| 416 | |
| 417 // Detect the resources that have been removed since last refresh | |
| 418 removedPaths.clear(); | |
| 419 std::set<std::string> removedResources; | |
| 420 | |
| 421 for (Map::iterator it = resourceToPath_.begin(); it != resourceToPath_.end(); ++it) | |
| 422 { | |
| 423 if (resources.find(it->first) == resources.end()) | |
| 424 { | |
| 425 const std::string& path = it->second; | |
| 426 | |
| 427 assert(pathToResource_.find(path) != pathToResource_.end()); | |
| 428 pathToResource_.erase(path); | |
| 429 removedPaths.insert(path); | |
| 430 | |
| 431 removedResources.insert(it->first); // Delay the removal to avoid disturbing the iterator | |
| 432 } | |
| 433 } | |
| 434 | |
| 435 // Remove the missing resources | |
| 436 for (std::set<std::string>::const_iterator it = removedResources.begin(); it != removedResources.end(); ++it) | |
| 437 { | |
| 438 assert(resourceToPath_.find(*it) != resourceToPath_.end()); | |
| 439 resourceToPath_.erase(*it); | |
| 440 } | |
| 441 | |
| 442 CheckInvariants(); | |
| 443 | |
| 444 for (std::set<std::string>::const_iterator it = resources.begin(); it != resources.end(); ++it) | |
| 445 { | |
| 446 Register(*it); | |
| 447 } | |
| 448 | |
| 449 CheckInvariants(); | |
| 450 } | |
| 451 | |
| 452 const Map& GetPathToResource() const | |
| 453 { | |
| 454 return pathToResource_; | |
| 455 } | |
| 456 }; | |
| 457 | |
| 458 | |
| 459 class OrthancWebDav::InstancesOfSeries : public INode | |
| 460 { | |
| 461 private: | |
| 462 ServerContext& context_; | |
| 463 std::string parentSeries_; | |
| 464 | |
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465 static bool LookupInstanceId(std::string& instanceId, |
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466 const UriComponents& path) |
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467 { |
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468 if (path.size() == 1 && |
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469 boost::ends_with(path[0], ".dcm")) |
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470 { |
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471 instanceId = path[0].substr(0, path[0].size() - 4); |
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472 return true; |
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473 } |
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474 else |
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475 { |
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476 return false; |
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477 } |
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478 } |
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479 |
| 4240 | 480 public: |
| 481 InstancesOfSeries(ServerContext& context, | |
| 482 const std::string& parentSeries) : | |
| 483 context_(context), | |
| 484 parentSeries_(parentSeries) | |
| 485 { | |
| 486 } | |
| 487 | |
| 488 virtual bool ListCollection(IWebDavBucket::Collection& target, | |
| 489 const UriComponents& path) ORTHANC_OVERRIDE | |
| 490 { | |
| 491 if (path.empty()) | |
| 492 { | |
| 493 std::list<std::string> resources; | |
| 494 try | |
| 495 { | |
| 496 context_.GetIndex().GetChildren(resources, parentSeries_); | |
| 497 } | |
| 498 catch (OrthancException&) | |
| 499 { | |
| 500 // Unknown (or deleted) parent series | |
| 501 return false; | |
| 502 } | |
| 503 | |
| 504 for (std::list<std::string>::const_iterator | |
| 505 it = resources.begin(); it != resources.end(); ++it) | |
| 506 { | |
| 507 boost::posix_time::ptime time; | |
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508 LookupTime(time, context_, *it, ResourceType_Instance, MetadataType_Instance_ReceptionDate); |
| 4240 | 509 |
| 510 FileInfo info; | |
| 511 if (context_.GetIndex().LookupAttachment(info, *it, FileContentType_Dicom)) | |
| 512 { | |
| 513 std::unique_ptr<File> resource(new File(*it + ".dcm")); | |
| 514 resource->SetMimeType(MimeType_Dicom); | |
| 515 resource->SetContentLength(info.GetUncompressedSize()); | |
| 516 resource->SetCreationTime(time); | |
| 517 target.AddResource(resource.release()); | |
| 518 } | |
| 519 } | |
| 520 | |
| 521 return true; | |
| 522 } | |
| 523 else | |
| 524 { | |
| 525 return false; | |
| 526 } | |
| 527 } | |
| 528 | |
| 529 virtual bool GetFileContent(MimeType& mime, | |
| 530 std::string& content, | |
| 531 boost::posix_time::ptime& time, | |
| 532 const UriComponents& path) ORTHANC_OVERRIDE | |
| 533 { | |
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534 std::string instanceId; |
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535 if (LookupInstanceId(instanceId, path)) |
| 4240 | 536 { |
| 537 try | |
| 538 { | |
| 539 mime = MimeType_Dicom; | |
| 540 context_.ReadDicom(content, instanceId); | |
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541 LookupTime(time, context_, instanceId, ResourceType_Instance, MetadataType_Instance_ReceptionDate); |
| 4240 | 542 return true; |
| 543 } | |
| 544 catch (OrthancException&) | |
| 545 { | |
| 546 // File was removed | |
| 547 return false; | |
| 548 } | |
| 549 } | |
| 550 else | |
| 551 { | |
| 552 return false; | |
| 553 } | |
| 554 } | |
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555 |
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556 virtual bool DeleteItem(const UriComponents& path) ORTHANC_OVERRIDE |
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557 { |
| 4252 | 558 if (path.empty()) |
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559 { |
| 4252 | 560 // Delete all |
| 561 std::list<std::string> resources; | |
| 562 try | |
| 563 { | |
| 564 context_.GetIndex().GetChildren(resources, parentSeries_); | |
| 565 } | |
| 566 catch (OrthancException&) | |
| 567 { | |
| 568 // Unknown (or deleted) parent series | |
| 569 return true; | |
| 570 } | |
| 571 | |
| 572 for (std::list<std::string>::const_iterator it = resources.begin(); | |
| 573 it != resources.end(); ++it) | |
| 574 { | |
| 575 Json::Value info; | |
| 576 context_.DeleteResource(info, *it, ResourceType_Instance); | |
| 577 } | |
| 578 | |
| 579 return true; | |
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580 } |
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581 else |
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582 { |
| 4252 | 583 std::string instanceId; |
| 584 if (LookupInstanceId(instanceId, path)) | |
| 585 { | |
| 586 Json::Value info; | |
| 587 return context_.DeleteResource(info, instanceId, ResourceType_Instance); | |
| 588 } | |
| 589 else | |
| 590 { | |
| 591 return false; | |
| 592 } | |
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593 } |
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594 } |
| 4240 | 595 }; |
| 596 | |
| 597 | |
| 598 | |
| 599 /** | |
| 600 * The "InternalNode" class corresponds to a non-leaf node in the | |
| 601 * WebDAV tree, that only contains subfolders (no file). | |
| 602 * | |
| 603 * TODO: Implement a LRU index to dynamically remove the oldest | |
| 604 * children on high RAM usage. | |
| 605 **/ | |
| 606 class OrthancWebDav::InternalNode : public INode | |
| 607 { | |
| 608 private: | |
| 609 typedef std::map<std::string, INode*> Children; | |
| 610 | |
| 611 Children children_; | |
| 612 | |
| 613 INode* GetChild(const std::string& path) // Don't delete the result pointer! | |
| 614 { | |
| 615 Children::const_iterator child = children_.find(path); | |
| 616 if (child == children_.end()) | |
| 617 { | |
| 4253 | 618 INode* node = CreateSubfolder(path); |
| 4240 | 619 |
| 4253 | 620 if (node == NULL) |
| 4240 | 621 { |
| 622 return NULL; | |
| 623 } | |
| 624 else | |
| 625 { | |
| 4253 | 626 children_[path] = node; |
| 627 return node; | |
| 4240 | 628 } |
| 629 } | |
| 630 else | |
| 631 { | |
| 632 assert(child->second != NULL); | |
| 633 return child->second; | |
| 634 } | |
| 635 } | |
| 636 | |
| 637 protected: | |
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638 void InvalidateSubfolder(const std::string& path) |
| 4240 | 639 { |
| 640 Children::iterator child = children_.find(path); | |
| 641 if (child != children_.end()) | |
| 642 { | |
| 643 assert(child->second != NULL); | |
| 644 delete child->second; | |
| 645 children_.erase(child); | |
| 646 } | |
| 647 } | |
| 648 | |
| 649 virtual void Refresh() = 0; | |
| 650 | |
| 651 virtual bool ListSubfolders(IWebDavBucket::Collection& target) = 0; | |
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652 |
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653 virtual INode* CreateSubfolder(const std::string& path) = 0; |
| 4240 | 654 |
| 655 public: | |
| 656 virtual ~InternalNode() | |
| 657 { | |
| 658 for (Children::iterator it = children_.begin(); it != children_.end(); ++it) | |
| 659 { | |
| 660 assert(it->second != NULL); | |
| 661 delete it->second; | |
| 662 } | |
| 663 } | |
| 664 | |
| 665 virtual bool ListCollection(IWebDavBucket::Collection& target, | |
| 666 const UriComponents& path) | |
| 667 ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 668 { | |
| 669 Refresh(); | |
| 670 | |
| 671 if (path.empty()) | |
| 672 { | |
| 673 return ListSubfolders(target); | |
| 674 } | |
| 675 else | |
| 676 { | |
| 677 // Recursivity | |
| 678 INode* child = GetChild(path[0]); | |
| 679 if (child == NULL) | |
| 680 { | |
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681 // Must be "true" to allow DELETE on folders that are |
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682 // automatically removed through recursive deletion |
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683 return true; |
| 4240 | 684 } |
| 685 else | |
| 686 { | |
| 687 UriComponents subpath(path.begin() + 1, path.end()); | |
| 688 return child->ListCollection(target, subpath); | |
| 689 } | |
| 690 } | |
| 691 } | |
| 692 | |
| 693 virtual bool GetFileContent(MimeType& mime, | |
| 694 std::string& content, | |
| 695 boost::posix_time::ptime& time, | |
| 696 const UriComponents& path) | |
| 697 ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 698 { | |
| 699 if (path.empty()) | |
| 700 { | |
| 701 return false; // An internal node doesn't correspond to a file | |
| 702 } | |
| 703 else | |
| 704 { | |
| 705 // Recursivity | |
| 706 Refresh(); | |
| 707 | |
| 708 INode* child = GetChild(path[0]); | |
| 709 if (child == NULL) | |
| 710 { | |
| 711 return false; | |
| 712 } | |
| 713 else | |
| 714 { | |
| 715 UriComponents subpath(path.begin() + 1, path.end()); | |
| 716 return child->GetFileContent(mime, content, time, subpath); | |
| 717 } | |
| 718 } | |
| 719 } | |
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720 |
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721 |
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722 virtual bool DeleteItem(const UriComponents& path) ORTHANC_OVERRIDE ORTHANC_FINAL |
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723 { |
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724 Refresh(); |
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725 |
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726 if (path.empty()) |
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727 { |
| 4252 | 728 IWebDavBucket::Collection collection; |
| 729 if (ListSubfolders(collection)) | |
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730 { |
| 4252 | 731 std::set<std::string> content; |
| 732 collection.ListDisplayNames(content); | |
| 733 | |
| 734 for (std::set<std::string>::const_iterator | |
| 735 it = content.begin(); it != content.end(); ++it) | |
| 736 { | |
| 737 INode* node = GetChild(*it); | |
| 738 if (node) | |
| 739 { | |
| 740 node->DeleteItem(path); | |
| 741 } | |
| 742 } | |
| 743 | |
| 744 return true; | |
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745 } |
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746 else |
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747 { |
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748 return false; |
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749 } |
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750 } |
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751 else |
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752 { |
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753 INode* child = GetChild(path[0]); |
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754 if (child == NULL) |
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755 { |
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756 return true; |
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757 } |
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758 else |
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759 { |
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760 // Recursivity |
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761 UriComponents subpath(path.begin() + 1, path.end()); |
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762 return child->DeleteItem(subpath); |
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763 } |
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764 } |
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765 } |
| 4240 | 766 }; |
| 767 | |
| 768 | |
| 769 class OrthancWebDav::ListOfResources : public InternalNode | |
| 770 { | |
| 771 private: | |
| 772 ServerContext& context_; | |
| 773 const Templates& templates_; | |
| 774 std::unique_ptr<ResourcesIndex> index_; | |
| 775 MetadataType timeMetadata_; | |
| 776 | |
| 777 protected: | |
| 778 virtual void Refresh() ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 779 { | |
| 780 std::list<std::string> resources; | |
| 781 GetCurrentResources(resources); | |
| 782 | |
| 783 std::set<std::string> removedPaths; | |
| 784 index_->Refresh(removedPaths, std::set<std::string>(resources.begin(), resources.end())); | |
| 785 | |
| 786 // Remove the children whose associated resource doesn't exist anymore | |
| 787 for (std::set<std::string>::const_iterator | |
| 788 it = removedPaths.begin(); it != removedPaths.end(); ++it) | |
| 789 { | |
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790 InvalidateSubfolder(*it); |
| 4240 | 791 } |
| 792 } | |
| 793 | |
| 794 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 795 { | |
| 796 if (index_->GetLevel() == ResourceType_Instance) | |
| 797 { | |
| 798 // Not a collection, no subfolders | |
| 799 return false; | |
| 800 } | |
| 801 else | |
| 802 { | |
| 803 const ResourcesIndex::Map& paths = index_->GetPathToResource(); | |
| 804 | |
| 805 for (ResourcesIndex::Map::const_iterator it = paths.begin(); it != paths.end(); ++it) | |
| 806 { | |
| 807 boost::posix_time::ptime time; | |
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808 LookupTime(time, context_, it->second, index_->GetLevel(), timeMetadata_); |
| 4240 | 809 |
| 810 std::unique_ptr<IWebDavBucket::Resource> resource(new IWebDavBucket::Folder(it->first)); | |
| 811 resource->SetCreationTime(time); | |
| 812 target.AddResource(resource.release()); | |
| 813 } | |
| 814 | |
| 815 return true; | |
| 816 } | |
| 817 } | |
| 818 | |
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819 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE ORTHANC_FINAL |
| 4240 | 820 { |
| 821 ResourcesIndex::Map::const_iterator resource = index_->GetPathToResource().find(path); | |
| 822 if (resource == index_->GetPathToResource().end()) | |
| 823 { | |
| 824 return NULL; | |
| 825 } | |
| 826 else | |
| 827 { | |
| 828 return CreateResourceNode(resource->second); | |
| 829 } | |
| 830 } | |
| 831 | |
| 832 ServerContext& GetContext() const | |
| 833 { | |
| 834 return context_; | |
| 835 } | |
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836 |
| 4240 | 837 virtual void GetCurrentResources(std::list<std::string>& resources) = 0; |
| 838 | |
| 839 virtual INode* CreateResourceNode(const std::string& resource) = 0; | |
| 840 | |
| 841 public: | |
| 842 ListOfResources(ServerContext& context, | |
| 843 ResourceType level, | |
| 844 const Templates& templates) : | |
| 845 context_(context), | |
| 846 templates_(templates) | |
| 847 { | |
| 848 Templates::const_iterator t = templates.find(level); | |
| 849 if (t == templates.end()) | |
| 850 { | |
| 851 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 852 } | |
| 853 | |
| 854 index_.reset(new ResourcesIndex(context, level, t->second)); | |
| 855 | |
| 856 if (level == ResourceType_Instance) | |
| 857 { | |
| 858 timeMetadata_ = MetadataType_Instance_ReceptionDate; | |
| 859 } | |
| 860 else | |
| 861 { | |
| 862 timeMetadata_ = MetadataType_LastUpdate; | |
| 863 } | |
| 864 } | |
| 865 | |
| 866 ResourceType GetLevel() const | |
| 867 { | |
| 868 return index_->GetLevel(); | |
| 869 } | |
| 870 | |
| 871 const Templates& GetTemplates() const | |
| 872 { | |
| 873 return templates_; | |
| 874 } | |
| 875 }; | |
| 876 | |
| 877 | |
| 878 | |
| 879 class OrthancWebDav::SingleDicomResource : public ListOfResources | |
| 880 { | |
| 881 private: | |
| 882 std::string parentId_; | |
| 883 | |
| 884 protected: | |
| 885 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 886 { | |
| 887 try | |
| 888 { | |
| 889 GetContext().GetIndex().GetChildren(resources, parentId_); | |
| 890 } | |
| 891 catch (OrthancException&) | |
| 892 { | |
| 893 // Unknown parent resource | |
| 894 resources.clear(); | |
| 895 } | |
| 896 } | |
| 897 | |
| 898 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 899 { | |
| 900 if (GetLevel() == ResourceType_Instance) | |
| 901 { | |
| 902 return NULL; | |
| 903 } | |
| 904 else if (GetLevel() == ResourceType_Series) | |
| 905 { | |
| 906 return new InstancesOfSeries(GetContext(), resource); | |
| 907 } | |
| 908 else | |
| 909 { | |
| 910 ResourceType l = GetChildResourceType(GetLevel()); | |
| 911 return new SingleDicomResource(GetContext(), l, resource, GetTemplates()); | |
| 912 } | |
| 913 } | |
| 914 | |
| 915 public: | |
| 916 SingleDicomResource(ServerContext& context, | |
| 917 ResourceType level, | |
| 918 const std::string& parentId, | |
| 919 const Templates& templates) : | |
| 920 ListOfResources(context, level, templates), | |
| 921 parentId_(parentId) | |
| 922 { | |
| 923 } | |
| 924 }; | |
| 925 | |
| 926 | |
| 927 class OrthancWebDav::RootNode : public ListOfResources | |
| 928 { | |
| 929 protected: | |
| 930 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 931 { | |
| 932 GetContext().GetIndex().GetAllUuids(resources, GetLevel()); | |
| 933 } | |
| 934 | |
| 935 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 936 { | |
| 937 if (GetLevel() == ResourceType_Series) | |
| 938 { | |
| 939 return new InstancesOfSeries(GetContext(), resource); | |
| 940 } | |
| 941 else | |
| 942 { | |
| 943 ResourceType l = GetChildResourceType(GetLevel()); | |
| 944 return new SingleDicomResource(GetContext(), l, resource, GetTemplates()); | |
| 945 } | |
| 946 } | |
| 947 | |
| 948 public: | |
| 949 RootNode(ServerContext& context, | |
| 950 ResourceType level, | |
| 951 const Templates& templates) : | |
| 952 ListOfResources(context, level, templates) | |
| 953 { | |
| 954 } | |
| 955 }; | |
| 956 | |
| 957 | |
| 958 class OrthancWebDav::ListOfStudiesByDate : public ListOfResources | |
| 959 { | |
| 960 private: | |
| 961 std::string year_; | |
| 962 std::string month_; | |
| 963 | |
| 964 class Visitor : public ServerContext::ILookupVisitor | |
| 965 { | |
| 966 private: | |
| 967 std::list<std::string>& resources_; | |
| 968 | |
| 969 public: | |
| 4253 | 970 explicit Visitor(std::list<std::string>& resources) : |
| 4240 | 971 resources_(resources) |
| 972 { | |
| 973 } | |
| 974 | |
| 975 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 976 { | |
| 977 return false; // (*) | |
| 978 } | |
| 979 | |
| 980 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 981 { | |
| 982 } | |
| 983 | |
| 984 virtual void Visit(const std::string& publicId, | |
| 985 const std::string& instanceId /* unused */, | |
| 986 const DicomMap& mainDicomTags, | |
| 987 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 988 { | |
| 989 resources_.push_back(publicId); | |
| 990 } | |
| 991 }; | |
| 992 | |
| 993 protected: | |
| 994 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 995 { | |
| 996 DatabaseLookup query; | |
| 997 query.AddRestConstraint(DICOM_TAG_STUDY_DATE, year_ + month_ + "01-" + year_ + month_ + "31", | |
| 998 true /* case sensitive */, true /* mandatory tag */); | |
| 999 | |
| 1000 Visitor visitor(resources); | |
| 1001 GetContext().Apply(visitor, query, ResourceType_Study, 0 /* since */, 0 /* no limit */); | |
| 1002 } | |
| 1003 | |
| 1004 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 1005 { | |
| 1006 return new SingleDicomResource(GetContext(), ResourceType_Series, resource, GetTemplates()); | |
| 1007 } | |
| 1008 | |
| 1009 public: | |
| 1010 ListOfStudiesByDate(ServerContext& context, | |
| 1011 const std::string& year, | |
| 1012 const std::string& month, | |
| 1013 const Templates& templates) : | |
| 1014 ListOfResources(context, ResourceType_Study, templates), | |
| 1015 year_(year), | |
| 1016 month_(month) | |
| 1017 { | |
| 1018 if (year.size() != 4 || | |
| 1019 month.size() != 2) | |
| 1020 { | |
| 1021 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 1022 } | |
| 1023 } | |
| 1024 }; | |
| 1025 | |
| 1026 | |
| 1027 class OrthancWebDav::ListOfStudiesByMonth : public InternalNode | |
| 1028 { | |
| 1029 private: | |
| 1030 ServerContext& context_; | |
| 1031 std::string year_; | |
| 1032 const Templates& templates_; | |
| 1033 | |
| 1034 class Visitor : public ServerContext::ILookupVisitor | |
| 1035 { | |
| 1036 private: | |
| 1037 std::set<std::string> months_; | |
| 1038 | |
| 1039 public: | |
| 1040 const std::set<std::string>& GetMonths() const | |
| 1041 { | |
| 1042 return months_; | |
| 1043 } | |
| 1044 | |
| 1045 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 1046 { | |
| 1047 return false; // (*) | |
| 1048 } | |
| 1049 | |
| 1050 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 1051 { | |
| 1052 } | |
| 1053 | |
| 1054 virtual void Visit(const std::string& publicId, | |
| 1055 const std::string& instanceId /* unused */, | |
| 1056 const DicomMap& mainDicomTags, | |
| 1057 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 1058 { | |
| 1059 std::string s; | |
| 1060 if (mainDicomTags.LookupStringValue(s, DICOM_TAG_STUDY_DATE, false) && | |
| 1061 s.size() == 8) | |
| 1062 { | |
| 1063 months_.insert(s.substr(4, 2)); // Get the month from "YYYYMMDD" | |
| 1064 } | |
| 1065 } | |
| 1066 }; | |
| 1067 | |
| 1068 protected: | |
| 1069 virtual void Refresh() ORTHANC_OVERRIDE | |
| 1070 { | |
| 1071 } | |
| 1072 | |
| 1073 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE | |
| 1074 { | |
| 1075 DatabaseLookup query; | |
| 1076 query.AddRestConstraint(DICOM_TAG_STUDY_DATE, year_ + "0101-" + year_ + "1231", | |
| 1077 true /* case sensitive */, true /* mandatory tag */); | |
| 1078 | |
| 1079 Visitor visitor; | |
| 1080 context_.Apply(visitor, query, ResourceType_Study, 0 /* since */, 0 /* no limit */); | |
| 1081 | |
| 1082 for (std::set<std::string>::const_iterator it = visitor.GetMonths().begin(); | |
| 1083 it != visitor.GetMonths().end(); ++it) | |
| 1084 { | |
| 1085 target.AddResource(new IWebDavBucket::Folder(year_ + "-" + *it)); | |
| 1086 } | |
| 1087 | |
| 1088 return true; | |
| 1089 } | |
| 1090 | |
|
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1091 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE |
| 4240 | 1092 { |
| 1093 if (path.size() != 7) // Format: "YYYY-MM" | |
| 1094 { | |
| 1095 throw OrthancException(ErrorCode_InternalError); | |
| 1096 } | |
| 1097 else | |
| 1098 { | |
| 1099 const std::string year = path.substr(0, 4); | |
| 1100 const std::string month = path.substr(5, 2); | |
| 1101 return new ListOfStudiesByDate(context_, year, month, templates_); | |
| 1102 } | |
| 1103 } | |
| 1104 | |
| 1105 public: | |
| 1106 ListOfStudiesByMonth(ServerContext& context, | |
| 1107 const std::string& year, | |
| 1108 const Templates& templates) : | |
| 1109 context_(context), | |
| 1110 year_(year), | |
| 1111 templates_(templates) | |
| 1112 { | |
| 1113 if (year_.size() != 4) | |
| 1114 { | |
| 1115 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 1116 } | |
| 1117 } | |
| 1118 }; | |
| 1119 | |
| 1120 | |
| 1121 class OrthancWebDav::ListOfStudiesByYear : public InternalNode | |
| 1122 { | |
| 1123 private: | |
| 1124 ServerContext& context_; | |
| 1125 const Templates& templates_; | |
| 1126 | |
| 1127 protected: | |
| 1128 virtual void Refresh() ORTHANC_OVERRIDE | |
| 1129 { | |
| 1130 } | |
| 1131 | |
| 1132 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE | |
| 1133 { | |
| 1134 std::list<std::string> resources; | |
| 1135 context_.GetIndex().GetAllUuids(resources, ResourceType_Study); | |
| 1136 | |
| 1137 std::set<std::string> years; | |
| 1138 | |
| 1139 for (std::list<std::string>::const_iterator it = resources.begin(); it != resources.end(); ++it) | |
| 1140 { | |
| 1141 DicomMap tags; | |
| 1142 std::string studyDate; | |
| 1143 if (context_.GetIndex().GetMainDicomTags(tags, *it, ResourceType_Study, ResourceType_Study) && | |
| 1144 tags.LookupStringValue(studyDate, DICOM_TAG_STUDY_DATE, false) && | |
| 1145 studyDate.size() == 8) | |
| 1146 { | |
| 1147 years.insert(studyDate.substr(0, 4)); // Get the year from "YYYYMMDD" | |
| 1148 } | |
| 1149 } | |
| 1150 | |
| 1151 for (std::set<std::string>::const_iterator it = years.begin(); it != years.end(); ++it) | |
| 1152 { | |
| 1153 target.AddResource(new IWebDavBucket::Folder(*it)); | |
| 1154 } | |
| 1155 | |
| 1156 return true; | |
| 1157 } | |
| 1158 | |
|
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1159 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE |
| 4240 | 1160 { |
| 1161 return new ListOfStudiesByMonth(context_, path, templates_); | |
| 1162 } | |
| 1163 | |
| 1164 public: | |
| 1165 ListOfStudiesByYear(ServerContext& context, | |
| 1166 const Templates& templates) : | |
| 1167 context_(context), | |
| 1168 templates_(templates) | |
| 1169 { | |
| 1170 } | |
| 1171 }; | |
| 1172 | |
| 1173 | |
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1174 class OrthancWebDav::DicomDeleteVisitor : public ServerContext::ILookupVisitor |
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1175 { |
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1176 private: |
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1177 ServerContext& context_; |
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1178 ResourceType level_; |
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1179 |
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1180 public: |
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1181 DicomDeleteVisitor(ServerContext& context, |
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1182 ResourceType level) : |
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1183 context_(context), |
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1184 level_(level) |
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1185 { |
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1186 } |
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1187 |
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1188 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE |
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1189 { |
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1190 return false; // (*) |
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1191 } |
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1192 |
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1193 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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1194 { |
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1195 } |
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1196 |
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1197 virtual void Visit(const std::string& publicId, |
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1198 const std::string& instanceId /* unused */, |
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1199 const DicomMap& mainDicomTags /* unused */, |
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1200 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE |
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1201 { |
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1202 Json::Value info; |
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1203 context_.DeleteResource(info, publicId, level_); |
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1204 } |
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1205 }; |
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1206 |
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1207 |
| 4240 | 1208 void OrthancWebDav::AddVirtualFile(Collection& collection, |
| 1209 const UriComponents& path, | |
| 1210 const std::string& filename) | |
| 1211 { | |
| 1212 MimeType mime; | |
| 1213 std::string content; | |
| 4246 | 1214 boost::posix_time::ptime modification; // Unused, let the date be set to "GetNow()" |
| 4240 | 1215 |
| 1216 UriComponents p = path; | |
| 1217 p.push_back(filename); | |
| 1218 | |
| 1219 if (GetFileContent(mime, content, modification, p)) | |
| 1220 { | |
| 1221 std::unique_ptr<File> f(new File(filename)); | |
| 1222 f->SetMimeType(mime); | |
| 1223 f->SetContentLength(content.size()); | |
| 1224 collection.AddResource(f.release()); | |
| 1225 } | |
| 1226 } | |
| 1227 | |
| 1228 | |
| 1229 void OrthancWebDav::UploadWorker(OrthancWebDav* that) | |
| 1230 { | |
| 1231 assert(that != NULL); | |
| 1232 | |
| 1233 boost::posix_time::ptime lastModification = GetNow(); | |
| 1234 | |
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1235 while (that->uploadRunning_) |
| 4240 | 1236 { |
| 1237 std::unique_ptr<IDynamicObject> obj(that->uploadQueue_.Dequeue(100)); | |
| 1238 if (obj.get() != NULL) | |
| 1239 { | |
| 1240 that->Upload(reinterpret_cast<const SingleValueObject<std::string>&>(*obj).GetValue()); | |
| 1241 lastModification = GetNow(); | |
| 1242 } | |
|
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1243 else if (GetNow() - lastModification > boost::posix_time::seconds(30)) |
| 4240 | 1244 { |
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1245 /** |
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1246 * After every 30 seconds of inactivity, remove the empty |
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1247 * folders. This delay is needed to avoid removing |
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1248 * just-created folders before the remote WebDAV has time to |
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1249 * write files into it. |
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1250 **/ |
|
4268
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1251 LOG(TRACE) << "Cleaning up the empty WebDAV upload folders"; |
| 4240 | 1252 that->uploads_.RemoveEmptyFolders(); |
| 1253 lastModification = GetNow(); | |
| 1254 } | |
| 1255 } | |
| 1256 } | |
| 1257 | |
| 1258 | |
| 1259 void OrthancWebDav::Upload(const std::string& path) | |
| 1260 { | |
| 1261 UriComponents uri; | |
| 1262 Toolbox::SplitUriComponents(uri, path); | |
| 1263 | |
| 1264 LOG(INFO) << "Upload from WebDAV: " << path; | |
| 1265 | |
| 1266 MimeType mime; | |
| 1267 std::string content; | |
| 1268 boost::posix_time::ptime time; | |
| 1269 if (uploads_.GetFileContent(mime, content, time, uri)) | |
| 1270 { | |
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1271 bool success = false; |
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1272 |
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1273 if (ZipReader::IsZipMemoryBuffer(content)) |
| 4240 | 1274 { |
|
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1275 // New in Orthanc 1.8.2 |
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1276 std::unique_ptr<ZipReader> reader(ZipReader::CreateFromMemory(content)); |
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1277 |
| 4386 | 1278 std::string filename, uncompressedFile; |
| 1279 while (reader->ReadNextFile(filename, uncompressedFile)) | |
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1280 { |
| 4386 | 1281 if (!uncompressedFile.empty()) |
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1282 { |
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|
1283 LOG(INFO) << "Uploading DICOM file extracted from a ZIP archive in WebDAV: " << filename; |
|
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|
1284 |
|
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|
1285 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(uncompressedFile)); |
|
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|
1286 instance->SetOrigin(DicomInstanceOrigin::FromWebDav()); |
|
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|
1287 |
|
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|
1288 std::string publicId; |
|
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|
1289 |
|
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|
1290 try |
|
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|
1291 { |
|
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|
1292 context_.Store(publicId, *instance, StoreInstanceMode_Default); |
|
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|
1293 } |
|
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|
1294 catch (OrthancException& e) |
|
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|
1295 { |
|
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|
1296 if (e.GetErrorCode() == ErrorCode_BadFileFormat) |
|
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|
1297 { |
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|
1298 LOG(ERROR) << "Cannot import non-DICOM file from ZIP archive: " << filename; |
|
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|
1299 } |
|
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|
1300 } |
|
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|
1301 } |
|
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|
1302 } |
|
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|
1303 |
|
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1304 success = true; |
| 4240 | 1305 } |
|
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|
1306 else |
| 4240 | 1307 { |
|
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|
1308 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(content)); |
|
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|
1309 instance->SetOrigin(DicomInstanceOrigin::FromWebDav()); |
|
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|
1310 |
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1311 try |
|
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1312 { |
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|
1313 std::string publicId; |
|
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|
1314 StoreStatus status = context_.Store(publicId, *instance, StoreInstanceMode_Default); |
|
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|
1315 if (status == StoreStatus_Success || |
|
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|
1316 status == StoreStatus_AlreadyStored) |
|
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1317 { |
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1318 LOG(INFO) << "Successfully imported DICOM instance from WebDAV: " |
|
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1319 << path << " (Orthanc ID: " << publicId << ")"; |
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1320 success = true; |
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1321 } |
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1322 } |
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|
1323 catch (OrthancException& e) |
|
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1324 { |
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1325 } |
|
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1326 } |
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1327 |
|
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|
1328 uploads_.DeleteItem(uri); |
|
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1329 |
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1330 if (!success) |
|
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1331 { |
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1332 LOG(WARNING) << "Cannot import DICOM instance from WebWAV (maybe not a DICOM file): " << path; |
| 4240 | 1333 } |
| 1334 } | |
| 1335 } | |
| 1336 | |
| 1337 | |
|
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1338 OrthancWebDav::INode& OrthancWebDav::GetRootNode(const std::string& rootPath) |
|
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1339 { |
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1340 if (rootPath == BY_PATIENTS) |
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1341 { |
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1342 return *patients_; |
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1343 } |
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1344 else if (rootPath == BY_STUDIES) |
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1345 { |
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|
1346 return *studies_; |
|
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1347 } |
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1348 else if (rootPath == BY_DATES) |
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|
1349 { |
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1350 return *dates_; |
|
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|
1351 } |
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|
1352 else |
|
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|
1353 { |
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|
1354 throw OrthancException(ErrorCode_InternalError); |
|
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|
1355 } |
|
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|
1356 } |
|
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|
1357 |
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|
1358 |
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|
1359 OrthancWebDav::OrthancWebDav(ServerContext& context, |
|
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|
1360 bool allowDicomDelete, |
|
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|
1361 bool allowUpload) : |
| 4240 | 1362 context_(context), |
|
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|
1363 allowDicomDelete_(allowDicomDelete), |
|
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|
1364 allowUpload_(allowUpload), |
| 4240 | 1365 uploads_(false /* store uploads as temporary files */), |
|
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|
1366 uploadRunning_(false) |
| 4240 | 1367 { |
| 1368 patientsTemplates_[ResourceType_Patient] = "{{PatientID}} - {{PatientName}}"; | |
| 1369 patientsTemplates_[ResourceType_Study] = "{{StudyDate}} - {{StudyDescription}}"; | |
| 1370 patientsTemplates_[ResourceType_Series] = "{{Modality}} - {{SeriesDescription}}"; | |
| 1371 | |
| 1372 studiesTemplates_[ResourceType_Study] = "{{PatientID}} - {{PatientName}} - {{StudyDescription}}"; | |
| 1373 studiesTemplates_[ResourceType_Series] = patientsTemplates_[ResourceType_Series]; | |
| 1374 | |
| 1375 patients_.reset(new RootNode(context, ResourceType_Patient, patientsTemplates_)); | |
| 1376 studies_.reset(new RootNode(context, ResourceType_Study, studiesTemplates_)); | |
| 1377 dates_.reset(new ListOfStudiesByYear(context, studiesTemplates_)); | |
| 1378 } | |
| 1379 | |
| 1380 | |
| 1381 bool OrthancWebDav::IsExistingFolder(const UriComponents& path) | |
| 1382 { | |
| 1383 if (path.empty()) | |
| 1384 { | |
| 1385 return true; | |
| 1386 } | |
| 1387 else if (path[0] == BY_UIDS) | |
| 1388 { | |
| 1389 return (path.size() <= 3 && | |
|
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1390 (path.size() != 3 || path[2] != STUDY_INFO)); |
| 4240 | 1391 } |
|
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|
1392 else if (path[0] == BY_PATIENTS || |
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|
1393 path[0] == BY_STUDIES || |
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|
1394 path[0] == BY_DATES) |
| 4240 | 1395 { |
| 4252 | 1396 IWebDavBucket::Collection collection; |
| 1397 return GetRootNode(path[0]).ListCollection(collection, UriComponents(path.begin() + 1, path.end())); | |
| 4240 | 1398 } |
|
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1399 else if (allowUpload_ && |
|
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|
1400 path[0] == UPLOADS) |
| 4240 | 1401 { |
| 1402 return uploads_.IsExistingFolder(UriComponents(path.begin() + 1, path.end())); | |
| 1403 } | |
| 1404 else | |
| 1405 { | |
| 1406 return false; | |
| 1407 } | |
| 1408 } | |
| 1409 | |
| 1410 | |
| 1411 bool OrthancWebDav::ListCollection(Collection& collection, | |
| 1412 const UriComponents& path) | |
| 1413 { | |
| 1414 if (path.empty()) | |
| 1415 { | |
| 4241 | 1416 collection.AddResource(new Folder(BY_DATES)); |
| 4240 | 1417 collection.AddResource(new Folder(BY_PATIENTS)); |
| 1418 collection.AddResource(new Folder(BY_STUDIES)); | |
| 1419 collection.AddResource(new Folder(BY_UIDS)); | |
|
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1420 |
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|
1421 if (allowUpload_) |
|
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1422 { |
|
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|
1423 collection.AddResource(new Folder(UPLOADS)); |
|
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|
1424 } |
|
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1425 |
| 4240 | 1426 return true; |
| 1427 } | |
| 1428 else if (path[0] == BY_UIDS) | |
| 1429 { | |
| 1430 DatabaseLookup query; | |
| 1431 ResourceType level; | |
| 1432 size_t limit = 0; // By default, no limits | |
| 1433 | |
| 1434 if (path.size() == 1) | |
| 1435 { | |
| 1436 level = ResourceType_Study; | |
|
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|
1437 limit = 0; // TODO - Should we limit here? |
| 4240 | 1438 } |
| 1439 else if (path.size() == 2) | |
| 1440 { | |
|
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|
1441 AddVirtualFile(collection, path, STUDY_INFO); |
| 4240 | 1442 |
| 1443 level = ResourceType_Series; | |
| 1444 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1445 true /* case sensitive */, true /* mandatory tag */); | |
| 1446 } | |
| 1447 else if (path.size() == 3) | |
| 1448 { | |
|
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changeset
|
1449 AddVirtualFile(collection, path, SERIES_INFO); |
| 4240 | 1450 |
| 1451 level = ResourceType_Instance; | |
| 1452 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1453 true /* case sensitive */, true /* mandatory tag */); | |
| 1454 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1455 true /* case sensitive */, true /* mandatory tag */); | |
| 1456 } | |
| 1457 else | |
| 1458 { | |
| 1459 return false; | |
| 1460 } | |
| 1461 | |
| 1462 DicomIdentifiersVisitor visitor(context_, collection, level); | |
| 1463 context_.Apply(visitor, query, level, 0 /* since */, limit); | |
| 1464 | |
| 1465 return true; | |
| 1466 } | |
|
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1467 else if (path[0] == BY_PATIENTS || |
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1468 path[0] == BY_STUDIES || |
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1469 path[0] == BY_DATES) |
| 4240 | 1470 { |
|
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1471 return GetRootNode(path[0]).ListCollection(collection, UriComponents(path.begin() + 1, path.end())); |
| 4240 | 1472 } |
|
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1473 else if (allowUpload_ && |
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1474 path[0] == UPLOADS) |
| 4240 | 1475 { |
| 1476 return uploads_.ListCollection(collection, UriComponents(path.begin() + 1, path.end())); | |
| 1477 } | |
| 1478 else | |
| 1479 { | |
| 1480 return false; | |
| 1481 } | |
| 1482 } | |
| 1483 | |
| 1484 | |
| 1485 bool OrthancWebDav::GetFileContent(MimeType& mime, | |
| 1486 std::string& content, | |
| 1487 boost::posix_time::ptime& modificationTime, | |
| 1488 const UriComponents& path) | |
| 1489 { | |
| 1490 if (path.empty()) | |
| 1491 { | |
| 1492 return false; | |
| 1493 } | |
| 1494 else if (path[0] == BY_UIDS) | |
| 1495 { | |
| 1496 if (path.size() == 3 && | |
|
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1497 path[2] == STUDY_INFO) |
| 4240 | 1498 { |
| 1499 DatabaseLookup query; | |
| 1500 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1501 true /* case sensitive */, true /* mandatory tag */); | |
| 1502 | |
| 1503 OrthancJsonVisitor visitor(context_, content, ResourceType_Study); | |
| 1504 context_.Apply(visitor, query, ResourceType_Study, 0 /* since */, 0 /* no limit */); | |
| 1505 | |
| 1506 mime = MimeType_Json; | |
| 1507 return visitor.IsSuccess(); | |
| 1508 } | |
| 1509 else if (path.size() == 4 && | |
|
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1510 path[3] == SERIES_INFO) |
| 4240 | 1511 { |
| 1512 DatabaseLookup query; | |
| 1513 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1514 true /* case sensitive */, true /* mandatory tag */); | |
| 1515 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1516 true /* case sensitive */, true /* mandatory tag */); | |
| 1517 | |
| 1518 OrthancJsonVisitor visitor(context_, content, ResourceType_Series); | |
| 1519 context_.Apply(visitor, query, ResourceType_Series, 0 /* since */, 0 /* no limit */); | |
| 1520 | |
| 1521 mime = MimeType_Json; | |
| 1522 return visitor.IsSuccess(); | |
| 1523 } | |
| 1524 else if (path.size() == 4 && | |
| 1525 boost::ends_with(path[3], ".dcm")) | |
| 1526 { | |
|
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1527 const std::string sopInstanceUid = path[3].substr(0, path[3].size() - 4); |
| 4240 | 1528 |
| 1529 DatabaseLookup query; | |
| 1530 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1531 true /* case sensitive */, true /* mandatory tag */); | |
| 1532 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1533 true /* case sensitive */, true /* mandatory tag */); | |
| 1534 query.AddRestConstraint(DICOM_TAG_SOP_INSTANCE_UID, sopInstanceUid, | |
| 1535 true /* case sensitive */, true /* mandatory tag */); | |
| 1536 | |
| 1537 DicomFileVisitor visitor(context_, content, modificationTime); | |
| 1538 context_.Apply(visitor, query, ResourceType_Instance, 0 /* since */, 0 /* no limit */); | |
| 1539 | |
| 1540 mime = MimeType_Dicom; | |
| 1541 return visitor.IsSuccess(); | |
| 1542 } | |
| 1543 else | |
| 1544 { | |
| 1545 return false; | |
| 1546 } | |
| 1547 } | |
|
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1548 else if (path[0] == BY_PATIENTS || |
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1549 path[0] == BY_STUDIES || |
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1550 path[0] == BY_DATES) |
| 4240 | 1551 { |
|
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1552 return GetRootNode(path[0]).GetFileContent(mime, content, modificationTime, UriComponents(path.begin() + 1, path.end())); |
| 4241 | 1553 } |
|
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1554 else if (allowUpload_ && |
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|
1555 path[0] == UPLOADS) |
| 4240 | 1556 { |
| 1557 return uploads_.GetFileContent(mime, content, modificationTime, UriComponents(path.begin() + 1, path.end())); | |
| 1558 } | |
| 1559 else | |
| 1560 { | |
| 1561 return false; | |
| 1562 } | |
| 1563 } | |
| 1564 | |
| 1565 | |
| 1566 bool OrthancWebDav::StoreFile(const std::string& content, | |
| 1567 const UriComponents& path) | |
| 1568 { | |
|
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1569 if (allowUpload_ && |
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|
1570 path.size() >= 1 && |
| 4240 | 1571 path[0] == UPLOADS) |
| 1572 { | |
| 1573 UriComponents subpath(UriComponents(path.begin() + 1, path.end())); | |
| 1574 | |
| 1575 if (uploads_.StoreFile(content, subpath)) | |
| 1576 { | |
| 1577 if (!content.empty()) | |
| 1578 { | |
| 1579 uploadQueue_.Enqueue(new SingleValueObject<std::string>(Toolbox::FlattenUri(subpath))); | |
| 1580 } | |
| 1581 return true; | |
| 1582 } | |
| 1583 else | |
| 1584 { | |
| 1585 return false; | |
| 1586 } | |
| 1587 } | |
| 1588 else | |
| 1589 { | |
| 1590 return false; | |
| 1591 } | |
| 1592 } | |
| 1593 | |
| 1594 | |
| 1595 bool OrthancWebDav::CreateFolder(const UriComponents& path) | |
| 1596 { | |
|
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1597 if (allowUpload_ && |
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|
1598 path.size() >= 1 && |
| 4240 | 1599 path[0] == UPLOADS) |
| 1600 { | |
| 1601 return uploads_.CreateFolder(UriComponents(path.begin() + 1, path.end())); | |
| 1602 } | |
| 1603 else | |
| 1604 { | |
| 1605 return false; | |
| 1606 } | |
| 1607 } | |
| 1608 | |
| 1609 | |
| 1610 bool OrthancWebDav::DeleteItem(const std::vector<std::string>& path) | |
| 1611 { | |
|
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1612 if (path.empty()) |
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1613 { |
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1614 return false; |
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|
1615 } |
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1616 else if (path[0] == BY_UIDS && |
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|
1617 path.size() >= 2 && |
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1618 path.size() <= 4) |
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|
1619 { |
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|
1620 if (allowDicomDelete_) |
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|
1621 { |
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|
1622 ResourceType level; |
|
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|
1623 DatabaseLookup query; |
|
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|
1624 |
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|
1625 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], |
|
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|
1626 true /* case sensitive */, true /* mandatory tag */); |
|
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|
1627 level = ResourceType_Study; |
|
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|
1628 |
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|
1629 if (path.size() >= 3) |
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|
1630 { |
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|
1631 if (path[2] == STUDY_INFO) |
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|
1632 { |
| 4252 | 1633 return true; // Allow deletion of virtual files (to avoid blocking recursive DELETE) |
|
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|
1634 } |
|
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|
1635 |
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|
1636 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], |
|
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|
1637 true /* case sensitive */, true /* mandatory tag */); |
|
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|
1638 level = ResourceType_Series; |
|
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|
1639 } |
|
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|
1640 |
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|
1641 if (path.size() == 4) |
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|
1642 { |
|
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|
1643 if (path[3] == SERIES_INFO) |
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|
1644 { |
| 4252 | 1645 return true; // Allow deletion of virtual files (to avoid blocking recursive DELETE) |
|
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|
1646 } |
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|
1647 else if (boost::ends_with(path[3], ".dcm")) |
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|
1648 { |
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|
1649 const std::string sopInstanceUid = path[3].substr(0, path[3].size() - 4); |
|
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|
1650 |
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|
1651 query.AddRestConstraint(DICOM_TAG_SOP_INSTANCE_UID, sopInstanceUid, |
|
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|
1652 true /* case sensitive */, true /* mandatory tag */); |
|
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|
1653 level = ResourceType_Instance; |
|
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|
1654 } |
|
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|
1655 else |
|
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|
1656 { |
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|
1657 return false; |
|
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|
1658 } |
|
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|
1659 } |
|
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|
1660 |
|
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|
1661 DicomDeleteVisitor visitor(context_, level); |
| 4252 | 1662 context_.Apply(visitor, query, level, 0 /* since */, 0 /* no limit */); |
|
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|
1663 return true; |
|
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|
1664 } |
|
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|
1665 else |
|
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|
1666 { |
|
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|
1667 return false; // read-only |
|
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|
1668 } |
|
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|
1669 } |
|
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|
1670 else if (path[0] == BY_PATIENTS || |
|
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|
1671 path[0] == BY_STUDIES || |
|
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|
1672 path[0] == BY_DATES) |
|
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|
1673 { |
|
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|
1674 if (allowDicomDelete_) |
|
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1675 { |
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1676 return GetRootNode(path[0]).DeleteItem(UriComponents(path.begin() + 1, path.end())); |
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1677 } |
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1678 else |
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1679 { |
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1680 return false; // read-only |
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1681 } |
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1682 } |
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1683 else if (allowUpload_ && |
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1684 path[0] == UPLOADS) |
| 4240 | 1685 { |
| 1686 return uploads_.DeleteItem(UriComponents(path.begin() + 1, path.end())); | |
| 1687 } | |
| 1688 else | |
| 1689 { | |
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1690 return false; |
| 4240 | 1691 } |
| 1692 } | |
| 1693 | |
| 1694 | |
| 1695 void OrthancWebDav::Start() | |
| 1696 { | |
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1697 if (uploadRunning_) |
| 4240 | 1698 { |
| 1699 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 1700 } | |
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1701 else if (allowUpload_) |
| 4240 | 1702 { |
| 1703 LOG(INFO) << "Starting the WebDAV upload thread"; | |
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1704 uploadRunning_ = true; |
| 4240 | 1705 uploadThread_ = boost::thread(UploadWorker, this); |
| 1706 } | |
| 1707 } | |
| 1708 | |
| 1709 | |
| 1710 void OrthancWebDav::Stop() | |
| 1711 { | |
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1712 if (uploadRunning_) |
| 4240 | 1713 { |
| 1714 LOG(INFO) << "Stopping the WebDAV upload thread"; | |
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1715 uploadRunning_ = false; |
| 4240 | 1716 if (uploadThread_.joinable()) |
| 1717 { | |
| 1718 uploadThread_.join(); | |
| 1719 } | |
| 1720 } | |
| 1721 } | |
| 1722 } |