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annotate OrthancServer/Sources/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 4495:fa2311f94d9f

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IStorageArea::ReadRange()
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 04 Feb 2021 18:01:07 +0100
parents 1619cffd1948
children 8f9090b137f1
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "../PrecompiledHeadersServer.h"
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35 #include "OrthancRestApi.h"
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36
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37 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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38 #include "../../../OrthancFramework/Sources/Logging.h"
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39 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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40 #include "../OrthancConfiguration.h"
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41 #include "../ServerContext.h"
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42 #include "../ServerJobs/MergeStudyJob.h"
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43 #include "../ServerJobs/ResourceModificationJob.h"
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44 #include "../ServerJobs/SplitStudyJob.h"
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45
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46 #include <boost/lexical_cast.hpp>
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47 #include <boost/algorithm/string/predicate.hpp>
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48
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49 namespace Orthanc
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50 {
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51 // Modification of DICOM instances ------------------------------------------
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52
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53
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54 static std::string GeneratePatientName(ServerContext& context)
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55 {
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56 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence);
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57 return "Anonymized" + boost::lexical_cast<std::string>(seq);
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58 }
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59
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60
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61 static void DocumentModifyOptions(RestApiPostCall& call)
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62 {
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63 // Check out "DicomModification::ParseModifyRequest()"
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64 call.GetDocumentation()
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65 .SetRequestField("Transcode", RestApiCallDocumentation::Type_String,
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66 "Transcode the DICOM instances to the provided DICOM transfer syntax: "
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67 "https://book.orthanc-server.com/faq/transcoding.html", false)
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68 .SetRequestField("Force", RestApiCallDocumentation::Type_Boolean,
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69 "Allow the modification of tags related to DICOM identifiers, at the risk of "
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70 "breaking the DICOM model of the real world", false)
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71 .SetRequestField("RemovePrivateTags", RestApiCallDocumentation::Type_Boolean,
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72 "Remove the private tags from the DICOM instances (defaults to `false`)", false)
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73 .SetRequestField("Replace", RestApiCallDocumentation::Type_JsonObject,
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74 "Associative array to change the value of some DICOM tags in the DICOM instances", false)
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75 .SetRequestField("Remove", RestApiCallDocumentation::Type_JsonListOfStrings,
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76 "List of tags that must be removed from the DICOM instances", false)
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77 .SetRequestField("Keep", RestApiCallDocumentation::Type_JsonListOfStrings,
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78 "Keep the original value of the specified tags, to be chosen among the `StudyInstanceUID`, "
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79 "`SeriesInstanceUID` and `SOPInstanceUID` tags. Avoid this feature as much as possible, "
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80 "as this breaks the DICOM model of the real world.", false)
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81 .SetRequestField("PrivateCreator", RestApiCallDocumentation::Type_String,
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82 "The private creator to be used for private tags in `Replace`", false);
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83 }
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84
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85
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86 static void DocumentAnonymizationOptions(RestApiPostCall& call)
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87 {
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88 // Check out "DicomModification::ParseAnonymizationRequest()"
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89 call.GetDocumentation()
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90 .SetRequestField("Force", RestApiCallDocumentation::Type_Boolean,
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91 "Allow the modification of tags related to DICOM identifiers, at the risk of "
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92 "breaking the DICOM model of the real world", false)
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93 .SetRequestField("DicomVersion", RestApiCallDocumentation::Type_String,
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94 "Version of the DICOM standard to be used for anonymization. Check out "
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95 "configuration option `DeidentifyLogsDicomVersion` for possible values.", false)
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96 .SetRequestField("KeepPrivateTags", RestApiCallDocumentation::Type_Boolean,
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97 "Keep the private tags from the DICOM instances (defaults to `false`)", false)
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98 .SetRequestField("Replace", RestApiCallDocumentation::Type_JsonObject,
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99 "Associative array to change the value of some DICOM tags in the DICOM instances", false)
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100 .SetRequestField("Remove", RestApiCallDocumentation::Type_JsonListOfStrings,
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101 "List of additional tags to be removed from the DICOM instances", false)
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102 .SetRequestField("Keep", RestApiCallDocumentation::Type_JsonListOfStrings,
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103 "List of DICOM tags whose value must not be destroyed by the anonymization", false)
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104 .SetRequestField("PrivateCreator", RestApiCallDocumentation::Type_String,
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105 "The private creator to be used for private tags in `Replace`", false);
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106 }
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107
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108
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109 static void ParseModifyRequest(Json::Value& request,
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110 DicomModification& target,
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111 const RestApiPostCall& call)
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112 {
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113 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"},"Priority":9}'
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114
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115 {
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116 OrthancConfiguration::ReaderLock lock;
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117 target.SetPrivateCreator(lock.GetConfiguration().GetDefaultPrivateCreator());
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118 }
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119
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120 if (call.ParseJsonRequest(request))
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121 {
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122 target.ParseModifyRequest(request);
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123 }
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124 else
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125 {
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126 throw OrthancException(ErrorCode_BadFileFormat);
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127 }
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128 }
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129
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130
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131 static void ParseAnonymizationRequest(Json::Value& request,
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132 DicomModification& target,
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133 RestApiPostCall& call)
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134 {
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135 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Remove":["Modality"]}' > Anonymized.dcm
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136
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137 {
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138 OrthancConfiguration::ReaderLock lock;
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139 target.SetPrivateCreator(lock.GetConfiguration().GetDefaultPrivateCreator());
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140 }
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141
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142 if (call.ParseJsonRequest(request) &&
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143 request.isObject())
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144 {
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145 bool patientNameReplaced;
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146 target.ParseAnonymizationRequest(patientNameReplaced, request);
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147
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148 if (patientNameReplaced)
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149 {
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150 // Overwrite the random Patient's Name by one that is more
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151 // user-friendly (provided none was specified by the user)
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152 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true);
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153 }
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154 }
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155 else
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156 {
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157 throw OrthancException(ErrorCode_BadFileFormat);
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158 }
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159 }
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160
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161
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162 static void AnonymizeOrModifyInstance(DicomModification& modification,
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163 RestApiPostCall& call,
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164 bool transcode,
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165 DicomTransferSyntax targetSyntax)
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166 {
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167 ServerContext& context = OrthancRestApi::GetContext(call);
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168 std::string id = call.GetUriComponent("id", "");
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169
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170 std::unique_ptr<ParsedDicomFile> modified;
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171
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172 {
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173 ServerContext::DicomCacheLocker locker(context, id);
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174 modified.reset(locker.GetDicom().Clone(true));
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175 }
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176
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177 modification.Apply(*modified);
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178
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179 if (transcode)
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180 {
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181 IDicomTranscoder::DicomImage source;
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182 source.AcquireParsed(*modified); // "modified" is invalid below this point
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183
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184 IDicomTranscoder::DicomImage transcoded;
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185
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186 std::set<DicomTransferSyntax> s;
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187 s.insert(targetSyntax);
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188
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189 if (context.Transcode(transcoded, source, s, true))
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190 {
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191 call.GetOutput().AnswerBuffer(transcoded.GetBufferData(),
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192 transcoded.GetBufferSize(), MimeType_Dicom);
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193 }
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194 else
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195 {
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196 throw OrthancException(ErrorCode_InternalError,
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197 "Cannot transcode to transfer syntax: " +
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198 std::string(GetTransferSyntaxUid(targetSyntax)));
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199 }
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200 }
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201 else
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202 {
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203 modified->Answer(call.GetOutput());
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204 }
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205 }
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206
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207
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208 static void ModifyInstance(RestApiPostCall& call)
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209 {
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210 if (call.IsDocumentation())
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211 {
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212 DocumentModifyOptions(call);
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213 call.GetDocumentation()
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214 .SetTag("Instances")
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215 .SetSummary("Modify instance")
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216 .SetDescription("Download a modified version of the DICOM instance whose Orthanc identifier is provided in the URL: "
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217 "https://book.orthanc-server.com/users/anonymization.html#modification-of-a-single-instance")
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218 .SetUriArgument("id", "Orthanc identifier of the instance of interest")
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219 .AddAnswerType(MimeType_Dicom, "The modified DICOM instance");
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220 return;
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221 }
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222
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223 DicomModification modification;
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224 modification.SetAllowManualIdentifiers(true);
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225
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226 Json::Value request;
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227 ParseModifyRequest(request, modification, call);
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228
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229 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID))
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230 {
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231 modification.SetLevel(ResourceType_Patient);
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232 }
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233 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
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234 {
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235 modification.SetLevel(ResourceType_Study);
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236 }
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237 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
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238 {
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239 modification.SetLevel(ResourceType_Series);
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240 }
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241 else
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242 {
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243 modification.SetLevel(ResourceType_Instance);
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244 }
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245
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246 static const char* TRANSCODE = "Transcode";
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247 if (request.isMember(TRANSCODE))
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248 {
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249 std::string s = SerializationToolbox::ReadString(request, TRANSCODE);
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250
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251 DicomTransferSyntax syntax;
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252 if (LookupTransferSyntax(syntax, s))
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253 {
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254 AnonymizeOrModifyInstance(modification, call, true, syntax);
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255 }
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256 else
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257 {
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258 throw OrthancException(ErrorCode_ParameterOutOfRange, "Unknown transfer syntax: " + s);
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259 }
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260 }
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261 else
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262 {
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263 AnonymizeOrModifyInstance(modification, call, false /* no transcoding */,
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264 DicomTransferSyntax_LittleEndianImplicit /* unused */);
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265 }
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266 }
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267
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268
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269 static void AnonymizeInstance(RestApiPostCall& call)
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270 {
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271 if (call.IsDocumentation())
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272 {
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273 DocumentAnonymizationOptions(call);
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274 call.GetDocumentation()
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275 .SetTag("Instances")
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276 .SetSummary("Anonymize instance")
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277 .SetDescription("Download an anonymized version of the DICOM instance whose Orthanc identifier is provided in the URL: "
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278 "https://book.orthanc-server.com/users/anonymization.html#anonymization-of-a-single-instance")
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279 .SetUriArgument("id", "Orthanc identifier of the instance of interest")
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280 .AddAnswerType(MimeType_Dicom, "The anonymized DICOM instance");
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281 return;
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282 }
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283
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284 DicomModification modification;
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285 modification.SetAllowManualIdentifiers(true);
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286
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287 Json::Value request;
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288 ParseAnonymizationRequest(request, modification, call);
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289
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290 AnonymizeOrModifyInstance(modification, call, false /* no transcoding */,
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291 DicomTransferSyntax_LittleEndianImplicit /* unused */);
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292 }
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293
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294
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295 static void SetKeepSource(CleaningInstancesJob& job,
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296 const Json::Value& body)
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297 {
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298 static const char* KEEP_SOURCE = "KeepSource";
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299 if (body.isMember(KEEP_SOURCE))
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300 {
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301 job.SetKeepSource(SerializationToolbox::ReadBoolean(body, KEEP_SOURCE));
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302 }
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303 }
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304
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305
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306 static void SubmitModificationJob(std::unique_ptr<DicomModification>& modification,
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307 bool isAnonymization,
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308 RestApiPostCall& call,
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309 const Json::Value& body,
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310 ResourceType level)
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311 {
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312 ServerContext& context = OrthancRestApi::GetContext(call);
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313
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314 std::unique_ptr<ResourceModificationJob> job(new ResourceModificationJob(context));
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315
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316 job->SetModification(modification.release(), level, isAnonymization);
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317 job->SetOrigin(call);
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318 SetKeepSource(*job, body);
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319
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320 static const char* TRANSCODE = "Transcode";
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321 if (body.isMember(TRANSCODE))
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322 {
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323 job->SetTranscode(SerializationToolbox::ReadString(body, TRANSCODE));
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324 }
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325
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326 context.AddChildInstances(*job, call.GetUriComponent("id", ""));
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327 job->AddTrailingStep();
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328
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329 OrthancRestApi::GetApi(call).SubmitCommandsJob
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330 (call, job.release(), true /* synchronous by default */, body);
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331 }
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332
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333
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334 template <enum ResourceType resourceType>
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335 static void ModifyResource(RestApiPostCall& call)
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336 {
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337 if (call.IsDocumentation())
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338 {
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339 OrthancRestApi::DocumentSubmitCommandsJob(call);
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340 DocumentModifyOptions(call);
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341 const std::string r = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */);
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342 call.GetDocumentation()
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343 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */))
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344 .SetSummary("Modify " + r)
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345 .SetDescription("Start a job that will modify all the DICOM instances within the " + r +
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346 " whose identifier is provided in the URL. The modified DICOM instances will be "
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347 "stored into a brand new " + r + ", whose Orthanc identifiers will be returned by the job. "
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348 "https://book.orthanc-server.com/users/anonymization.html#modification-of-studies-or-series")
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349 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest");
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350 return;
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351 }
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352
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353 std::unique_ptr<DicomModification> modification(new DicomModification);
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354
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355 Json::Value body;
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356 ParseModifyRequest(body, *modification, call);
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357
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358 modification->SetLevel(resourceType);
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359
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360 SubmitModificationJob(modification, false /* not an anonymization */,
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361 call, body, resourceType);
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362 }
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363
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364
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365 template <enum ResourceType resourceType>
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366 static void AnonymizeResource(RestApiPostCall& call)
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367 {
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368 if (call.IsDocumentation())
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369 {
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370 OrthancRestApi::DocumentSubmitCommandsJob(call);
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371 DocumentAnonymizationOptions(call);
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372 const std::string r = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */);
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373 call.GetDocumentation()
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374 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */))
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375 .SetSummary("Anonymize " + r)
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376 .SetDescription("Start a job that will anonymize all the DICOM instances within the " + r +
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377 " whose identifier is provided in the URL. The modified DICOM instances will be "
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378 "stored into a brand new " + r + ", whose Orthanc identifiers will be returned by the job. "
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379 "https://book.orthanc-server.com/users/anonymization.html#anonymization-of-patients-studies-or-series")
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380 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest");
83371ccdfe80 openapi documentation is now completed
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parents: 4422
diff changeset
381 return;
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
382 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
383
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
384 std::unique_ptr<DicomModification> modification(new DicomModification);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385
2868
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
386 Json::Value body;
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
387 ParseAnonymizationRequest(body, *modification, call);
2640
c691fcf66071 ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2639
diff changeset
388
2868
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
389 SubmitModificationJob(modification, true /* anonymization */,
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
390 call, body, resourceType);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
394 static void StoreCreatedInstance(std::string& id /* out */,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
395 RestApiPostCall& call,
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
396 ParsedDicomFile& dicom,
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
397 bool sendAnswer)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
398 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
399 DicomInstanceToStore toStore;
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2642
diff changeset
400 toStore.SetOrigin(DicomInstanceOrigin::FromRest(call));
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
401 toStore.SetParsedDicomFile(dicom);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
402
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
403 ServerContext& context = OrthancRestApi::GetContext(call);
3814
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
404 StoreStatus status = context.Store(id, toStore, StoreInstanceMode_Default);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
405
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
406 if (status == StoreStatus_Failure)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
407 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
408 throw OrthancException(ErrorCode_CannotStoreInstance);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
409 }
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
410
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
411 if (sendAnswer)
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
412 {
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3910
diff changeset
413 OrthancRestApi::GetApi(call).AnswerStoredInstance(call, toStore, status, id);
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
414 }
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
415 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
416
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
417
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
418 static void CreateDicomV1(ParsedDicomFile& dicom,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
419 RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
420 const Json::Value& request)
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
421 {
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
422 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}'
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 796
diff changeset
423 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}'
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
424
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
425 assert(request.isObject());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
426 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom";
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
427
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
428 Json::Value::Members members = request.getMemberNames();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
429 for (size_t i = 0; i < members.size(); i++)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
430 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
431 const std::string& name = members[i];
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
432 if (request[name].type() != Json::stringValue)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
433 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
434 throw OrthancException(ErrorCode_CreateDicomNotString);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
435 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
436
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
437 std::string value = request[name].asString();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
438
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
439 DicomTag tag = FromDcmtkBridge::ParseTag(name);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
440 if (tag == DICOM_TAG_PIXEL_DATA)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
441 {
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
442 dicom.EmbedContent(value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
443 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
444 else
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
445 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
446 // This is V1, don't try and decode data URI scheme
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
447 dicom.ReplacePlainString(tag, value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
448 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
449 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
450 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
451
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
452
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
453 static void InjectTags(ParsedDicomFile& dicom,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
454 const Json::Value& tags,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
455 bool decodeBinaryTags,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
456 const std::string& privateCreator,
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
457 bool force)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
458 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
459 if (tags.type() != Json::objectValue)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
460 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
461 throw OrthancException(ErrorCode_BadRequest, "Tags field is not an array");
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
462 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
463
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
464 // Inject the user-specified tags
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
465 Json::Value::Members members = tags.getMemberNames();
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
466 for (size_t i = 0; i < members.size(); i++)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
467 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
468 const std::string& name = members[i];
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
469 DicomTag tag = FromDcmtkBridge::ParseTag(name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
470
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
471 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
472 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
473 if (!force &&
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
474 tag != DICOM_TAG_PATIENT_ID &&
1640
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
475 tag != DICOM_TAG_ACQUISITION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
476 tag != DICOM_TAG_ACQUISITION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
477 tag != DICOM_TAG_CONTENT_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
478 tag != DICOM_TAG_CONTENT_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
479 tag != DICOM_TAG_INSTANCE_CREATION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
480 tag != DICOM_TAG_INSTANCE_CREATION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
481 tag != DICOM_TAG_SERIES_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
482 tag != DICOM_TAG_SERIES_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
483 tag != DICOM_TAG_STUDY_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
484 tag != DICOM_TAG_STUDY_TIME &&
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
485 dicom.HasTag(tag))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
486 {
2952
4ceb9bf7b00c added details string in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2936
diff changeset
487 throw OrthancException(ErrorCode_CreateDicomOverrideTag, name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
488 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
489
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
490 if (tag == DICOM_TAG_PIXEL_DATA)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
491 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
492 throw OrthancException(ErrorCode_CreateDicomUseContent);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
493 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
494 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
495 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
496 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent, privateCreator);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
497 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
498 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
499 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
500 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
501
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
502
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
503 static void CreateSeries(RestApiPostCall& call,
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
504 ParsedDicomFile& base /* in */,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
505 const Json::Value& content,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
506 bool decodeBinaryTags,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
507 const std::string& privateCreator,
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
508 bool force)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
509 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
510 assert(content.isArray());
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
511 assert(content.size() > 0);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
512 ServerContext& context = OrthancRestApi::GetContext(call);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
513
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
514 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size()));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
515 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1");
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
516
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
517 std::string someInstance;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
518
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
519 try
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
520 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
521 for (Json::ArrayIndex i = 0; i < content.size(); i++)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
522 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
523 std::unique_ptr<ParsedDicomFile> dicom(base.Clone(false));
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
524 const Json::Value* payload = NULL;
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
525
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
526 if (content[i].type() == Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
527 {
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
528 payload = &content[i];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
529 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
530 else if (content[i].type() == Json::objectValue)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
531 {
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
532 if (!content[i].isMember("Content"))
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
533 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
534 throw OrthancException(ErrorCode_CreateDicomNoPayload);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
535 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
536
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
537 payload = &content[i]["Content"];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
538
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
539 if (content[i].isMember("Tags"))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
540 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
541 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags, privateCreator, force);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
542 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
543 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
544
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
545 if (payload == NULL ||
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
546 payload->type() != Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
547 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
548 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
549 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
550
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
551 dicom->EmbedContent(payload->asString());
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
552 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
553 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1));
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
554
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
555 StoreCreatedInstance(someInstance, call, *dicom, false);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
556 }
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
557 }
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
558 catch (OrthancException&)
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
559 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
560 // Error: Remove the newly-created series
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
561
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
562 std::string series;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
563 if (context.GetIndex().LookupParent(series, someInstance))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
564 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
565 Json::Value dummy;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
566 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
567 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
568
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
569 throw;
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
570 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
571
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
572 std::string series;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
573 if (context.GetIndex().LookupParent(series, someInstance))
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
574 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
575 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
576 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
577 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
578
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
579
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
580 static void CreateDicomV2(RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
581 const Json::Value& request)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
582 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
583 static const char* const CONTENT = "Content";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
584 static const char* const FORCE = "Force";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
585 static const char* const INTERPRET_BINARY_TAGS = "InterpretBinaryTags";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
586 static const char* const PARENT = "Parent";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
587 static const char* const PRIVATE_CREATOR = "PrivateCreator";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
588 static const char* const SPECIFIC_CHARACTER_SET_2 = "SpecificCharacterSet";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
589 static const char* const TAGS = "Tags";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
590 static const char* const TYPE = "Type";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
591 static const char* const VALUE = "Value";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
592
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
593 assert(request.isObject());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
594 ServerContext& context = OrthancRestApi::GetContext(call);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
595
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
596 if (!request.isMember(TAGS) ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
597 request[TAGS].type() != Json::objectValue)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
598 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
599 throw OrthancException(ErrorCode_BadRequest);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
600 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
601
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
602 ParsedDicomFile dicom(true);
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
603
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
604 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
605 Encoding encoding;
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
606
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
607 if (request[TAGS].isMember(SPECIFIC_CHARACTER_SET_2))
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
608 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
609 const char* tmp = request[TAGS][SPECIFIC_CHARACTER_SET_2].asCString();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
610 if (!GetDicomEncoding(encoding, tmp))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
611 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
612 throw OrthancException(ErrorCode_ParameterOutOfRange,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
613 "Unknown specific character set: " + std::string(tmp));
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
614 }
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
615 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
616 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
617 {
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2361
diff changeset
618 encoding = GetDefaultDicomEncoding();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
619 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
620
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
621 dicom.SetEncoding(encoding);
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
622 }
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
623
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
624 ResourceType parentType = ResourceType_Instance;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
625
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
626 if (request.isMember(PARENT))
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
627 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
628 // Locate the parent tags
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
629 std::string parent = request[PARENT].asString();
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
630 if (!context.GetIndex().LookupResourceType(parentType, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
631 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
632 throw OrthancException(ErrorCode_CreateDicomBadParent);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
633 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
634
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
635 if (parentType == ResourceType_Instance)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
636 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
637 throw OrthancException(ErrorCode_CreateDicomParentIsInstance);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
638 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
639
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
640 // Select one existing child instance of the parent resource, to
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
641 // retrieve all its tags
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
642 Json::Value siblingTags;
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
643 std::string siblingInstanceId;
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
644
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
645 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
646 // Retrieve all the instances of the parent resource
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
647 std::list<std::string> siblingInstances;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
648 context.GetIndex().GetChildInstances(siblingInstances, parent);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
649
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
650 if (siblingInstances.empty())
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
651 {
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
652 // Error: No instance (should never happen)
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
653 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
654 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
655
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
656 siblingInstanceId = siblingInstances.front();
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
657 context.ReadDicomAsJson(siblingTags, siblingInstanceId);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
658 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
659
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
660
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
661 // Choose the same encoding as the parent resource
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
662 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
663 static const char* SPECIFIC_CHARACTER_SET = "0008,0005";
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
664
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
665 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
666 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
667 Encoding encoding;
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
668
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
669 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember(VALUE) ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
670 siblingTags[SPECIFIC_CHARACTER_SET][VALUE].type() != Json::stringValue ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
671 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET][VALUE].asCString()))
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
672 {
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
673 LOG(WARNING) << "Instance with an incorrect Specific Character Set, "
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
674 << "using the default Orthanc encoding: " << siblingInstanceId;
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
675 encoding = GetDefaultDicomEncoding();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
676 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
677
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
678 dicom.SetEncoding(encoding);
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
679 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
680 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
681
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
682
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
683 // Retrieve the tags for all the parent modules
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
684 typedef std::set<DicomTag> ModuleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
685 ModuleTags moduleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
686
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
687 ResourceType type = parentType;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
688 for (;;)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
689 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
690 DicomTag::AddTagsForModule(moduleTags, GetModule(type));
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
691
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
692 if (type == ResourceType_Patient)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
693 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
694 break; // We're done
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
695 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
696
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
697 // Go up
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
698 std::string tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
699 if (!context.GetIndex().LookupParent(tmp, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
700 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
701 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
702 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
703
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
704 parent = tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
705 type = GetParentResourceType(type);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
706 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
707
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
708 for (ModuleTags::const_iterator it = moduleTags.begin();
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
709 it != moduleTags.end(); ++it)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
710 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
711 std::string t = it->Format();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
712 if (siblingTags.isMember(t))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
713 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
714 const Json::Value& tag = siblingTags[t];
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
715 if (tag[TYPE] == "Null")
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
716 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
717 dicom.ReplacePlainString(*it, "");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
718 }
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
719 else if (tag[TYPE] == "String")
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
720 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
721 std::string value = tag[VALUE].asString(); // This is an UTF-8 value (as it comes from JSON)
3441
6cc72ebfd6ef Fix issue #141 (/tools/create-dicom removes non-ASCII characters from study description)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
722 dicom.ReplacePlainString(*it, value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
723 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
724 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
725 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
726 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
727
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
728
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
729 bool decodeBinaryTags = true;
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
730 if (request.isMember(INTERPRET_BINARY_TAGS))
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
731 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
732 const Json::Value& v = request[INTERPRET_BINARY_TAGS];
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
733 if (v.type() != Json::booleanValue)
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
734 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
735 throw OrthancException(ErrorCode_BadRequest);
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
736 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
737
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
738 decodeBinaryTags = v.asBool();
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
739 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
740
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
741
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
742 // New argument in Orthanc 1.6.0
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
743 std::string privateCreator;
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
744 if (request.isMember(PRIVATE_CREATOR))
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
745 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
746 const Json::Value& v = request[PRIVATE_CREATOR];
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
747 if (v.type() != Json::stringValue)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
748 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
749 throw OrthancException(ErrorCode_BadRequest);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
750 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
751
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
752 privateCreator = v.asString();
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
753 }
3709
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
754 else
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
755 {
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
756 OrthancConfiguration::ReaderLock lock;
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
757 privateCreator = lock.GetConfiguration().GetDefaultPrivateCreator();
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
758 }
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
759
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
760
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
761 // New in Orthanc 1.9.0
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
762 bool force = false;
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
763 if (request.isMember(FORCE))
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
764 {
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
765 const Json::Value& v = request[FORCE];
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
766 if (v.type() != Json::booleanValue)
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
767 {
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
768 throw OrthancException(ErrorCode_BadRequest);
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
769 }
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
770
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
771 force = v.asBool();
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
772 }
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
773
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
774
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
775 // Inject time-related information
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
776 std::string date, time;
2475
8cc3ca64a534 Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
777 SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
778 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
779 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
780 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
781 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
782 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
783 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
784
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
785 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
786 parentType == ResourceType_Study ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
787 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
788 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
789 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
790 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
791 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
792
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
793 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
794 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
795 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
796 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
797 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
798 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
799
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
800
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
801 InjectTags(dicom, request[TAGS], decodeBinaryTags, privateCreator, force);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
802
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
803
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
804 // Inject the content (either an image, or a PDF file)
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
805 if (request.isMember(CONTENT))
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
806 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
807 const Json::Value& content = request[CONTENT];
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
808
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
809 if (content.type() == Json::stringValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
810 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
811 dicom.EmbedContent(request[CONTENT].asString());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
812
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
813 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
814 else if (content.type() == Json::arrayValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
815 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
816 if (content.size() > 0)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
817 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
818 // Let's create a series instead of a single instance
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
819 CreateSeries(call, dicom, content, decodeBinaryTags, privateCreator, force);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
820 return;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
821 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
822 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
823 else
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
824 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
825 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
826 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
827 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
828
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
829 std::string id;
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
830 StoreCreatedInstance(id, call, dicom, true);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
831 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
832
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
833
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
834 static void CreateDicom(RestApiPostCall& call)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
835 {
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
836 if (call.IsDocumentation())
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
837 {
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
838 call.GetDocumentation()
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
839 .SetTag("System")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
840 .SetSummary("Create one DICOM instance")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
841 .SetDescription("Create one DICOM instance, and store it into Orthanc")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
842 .SetRequestField("Tags", RestApiCallDocumentation::Type_JsonObject,
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
843 "Associative array containing the tags of the new instance to be created", true)
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
844 .SetRequestField("Content", RestApiCallDocumentation::Type_String,
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
845 "This field can be used to embed an image (pixel data) or a PDF inside the created DICOM instance. "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
846 "The PNG image, the JPEG image or the PDF file must be provided using their "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
847 "[data URI scheme encoding](https://en.wikipedia.org/wiki/Data_URI_scheme). "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
848 "This field can possibly contain a JSON array, in which case a DICOM series is created "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
849 "containing one DICOM instance for each item in the `Content` field.", false)
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
850 .SetRequestField("Parent", RestApiCallDocumentation::Type_String,
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
851 "If present, the newly created instance will be attached to the parent DICOM resource "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
852 "whose Orthanc identifier is contained in this field. The DICOM tags of the parent "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
853 "modules in the DICOM hierarchy will be automatically copied to the newly created instance.", false)
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
854 .SetRequestField("InterpretBinaryTags", RestApiCallDocumentation::Type_Boolean,
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
855 "If some value in the `Tags` associative array is formatted according to some "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
856 "[data URI scheme encoding](https://en.wikipedia.org/wiki/Data_URI_scheme), "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
857 "whether this value is decoded to a binary value or kept as such (`true` by default)", false)
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
858 .SetRequestField("PrivateCreator", RestApiCallDocumentation::Type_String,
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
859 "The private creator to be used for private tags in `Tags`", false)
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
860 .SetRequestField("Force", RestApiCallDocumentation::Type_Boolean,
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
861 "Avoid the consistency checks for the DICOM tags that enforce the DICOM model of the real-world. "
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
862 "You can notably use this flag if you need to manually set the tags `StudyInstanceUID`, "
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
863 "`SeriesInstanceUID`, or `SOPInstanceUID`. Be careful with this feature.", false)
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
864 .SetAnswerField("ID", RestApiCallDocumentation::Type_String, "Orthanc identifier of the newly created instance")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
865 .SetAnswerField("Path", RestApiCallDocumentation::Type_String, "Path to access the instance in the REST API");
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
866 return;
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
867 }
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
868
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
869 Json::Value request;
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
870 if (!call.ParseJsonRequest(request) ||
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
871 !request.isObject())
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
872 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
873 throw OrthancException(ErrorCode_BadRequest);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
874 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
875
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
876 if (request.isMember("Tags"))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
877 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
878 CreateDicomV2(call, request);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
879 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
880 else
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
881 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
882 // Compatibility with Orthanc <= 0.9.3
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
883 ParsedDicomFile dicom(true);
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
884 CreateDicomV1(dicom, call, request);
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
885
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
886 std::string id;
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
887 StoreCreatedInstance(id, call, dicom, true);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
888 }
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
889 }
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
890
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
891
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
892 static void SplitStudy(RestApiPostCall& call)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
893 {
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
894 if (call.IsDocumentation())
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
895 {
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
896 OrthancRestApi::DocumentSubmitCommandsJob(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
897 call.GetDocumentation()
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
898 .SetTag("Studies")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
899 .SetSummary("Split study")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
900 .SetDescription("Start a new job so as to split the DICOM study whose Orthanc identifier is provided in the URL, "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
901 "by taking some of its children series out of it and putting them into a brand new study (this "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
902 "new study is created by setting the `StudyInstanceUID` tag to a random identifier): "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
903 "https://book.orthanc-server.com/users/anonymization.html#splitting")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
904 .SetUriArgument("id", "Orthanc identifier of the study of interest")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
905 .SetRequestField("Series", RestApiCallDocumentation::Type_JsonListOfStrings,
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
906 "The list of series to be separated from the parent study (mandatory option). "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
907 "These series must all be children of the same source study, that is specified in the URI.", true)
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
908 .SetRequestField("Replace", RestApiCallDocumentation::Type_JsonObject,
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
909 "Associative array to change the value of some DICOM tags in the new study. "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
910 "These tags must be part of the \"Patient Module Attributes\" or the \"General Study "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
911 "Module Attributes\", as specified by the DICOM 2011 standard in Tables C.7-1 and C.7-3.", false)
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
912 .SetRequestField("Remove", RestApiCallDocumentation::Type_JsonListOfStrings,
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
913 "List of tags that must be removed in the new study (from the same modules as in the `Replace` option)", false)
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
914 .SetRequestField("KeepSource", RestApiCallDocumentation::Type_Boolean,
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
915 "If set to `true`, instructs Orthanc to keep a copy of the original series in the source study. "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
916 "By default, the original series are deleted from Orthanc.", false);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
917 return;
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
918 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
919
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
920 ServerContext& context = OrthancRestApi::GetContext(call);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
921
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
922 Json::Value request;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
923 if (!call.ParseJsonRequest(request))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
924 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
925 // Bad JSON request
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
926 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
927 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
928
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
929 const std::string study = call.GetUriComponent("id", "");
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
930
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
931 std::unique_ptr<SplitStudyJob> job(new SplitStudyJob(context, study));
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
932 job->SetOrigin(call);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
933
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
934 std::vector<std::string> series;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
935 SerializationToolbox::ReadArrayOfStrings(series, request, "Series");
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
936
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
937 for (size_t i = 0; i < series.size(); i++)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
938 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
939 job->AddSourceSeries(series[i]);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
940 }
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
941
2860
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
942 job->AddTrailingStep();
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
943
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
944 SetKeepSource(*job, request);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
945
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
946 static const char* REMOVE = "Remove";
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
947 if (request.isMember(REMOVE))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
948 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
949 if (request[REMOVE].type() != Json::arrayValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
950 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
951 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
952 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
953
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
954 for (Json::Value::ArrayIndex i = 0; i < request[REMOVE].size(); i++)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
955 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
956 if (request[REMOVE][i].type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
957 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
958 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
959 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
960 else
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
961 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
962 job->Remove(FromDcmtkBridge::ParseTag(request[REMOVE][i].asCString()));
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
963 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
964 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
965 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
966
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
967 static const char* REPLACE = "Replace";
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
968 if (request.isMember(REPLACE))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
969 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
970 if (request[REPLACE].type() != Json::objectValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
971 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
972 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
973 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
974
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
975 Json::Value::Members tags = request[REPLACE].getMemberNames();
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
976
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
977 for (size_t i = 0; i < tags.size(); i++)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
978 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
979 const Json::Value& value = request[REPLACE][tags[i]];
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
980
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
981 if (value.type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
982 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
983 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
984 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
985 else
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
986 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
987 job->Replace(FromDcmtkBridge::ParseTag(tags[i]), value.asString());
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
988 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
989 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
990 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
991
2869
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
992 OrthancRestApi::GetApi(call).SubmitCommandsJob
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
993 (call, job.release(), true /* synchronous by default */, request);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
994 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
995
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
996
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
997 static void MergeStudy(RestApiPostCall& call)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
998 {
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
999 if (call.IsDocumentation())
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1000 {
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1001 OrthancRestApi::DocumentSubmitCommandsJob(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1002 call.GetDocumentation()
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1003 .SetTag("Studies")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1004 .SetSummary("Merge study")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1005 .SetDescription("Start a new job so as to move some DICOM series into the DICOM study whose Orthanc identifier "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1006 "is provided in the URL: https://book.orthanc-server.com/users/anonymization.html#merging")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1007 .SetUriArgument("id", "Orthanc identifier of the study of interest")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1008 .SetRequestField("Resources", RestApiCallDocumentation::Type_JsonListOfStrings,
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1009 "The list of DICOM resources (patients, studies, series, and/or instances) to be merged "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1010 "into the study of interest (mandatory option)", true)
83371ccdfe80 openapi documentation is now completed
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1011 .SetRequestField("KeepSource", RestApiCallDocumentation::Type_Boolean,
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Sebastien Jodogne <s.jodogne@gmail.com>
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1012 "If set to `true`, instructs Orthanc to keep a copy of the original resources in their source study. "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
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1013 "By default, the original resources are deleted from Orthanc.", false);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
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1014 return;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
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1015 }
83371ccdfe80 openapi documentation is now completed
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parents: 4422
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1016
2853
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
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1017 ServerContext& context = OrthancRestApi::GetContext(call);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
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1018
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1019 Json::Value request;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1020 if (!call.ParseJsonRequest(request))
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
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1021 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
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1022 // Bad JSON request
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
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1023 throw OrthancException(ErrorCode_BadFileFormat);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
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1024 }
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1025
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1026 const std::string study = call.GetUriComponent("id", "");
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1027
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
1028 std::unique_ptr<MergeStudyJob> job(new MergeStudyJob(context, study));
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
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1029 job->SetOrigin(call);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1030
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1031 std::vector<std::string> resources;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1032 SerializationToolbox::ReadArrayOfStrings(resources, request, "Resources");
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1033
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
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1034 for (size_t i = 0; i < resources.size(); i++)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1035 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1036 job->AddSource(resources[i]);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1037 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1038
2860
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1039 job->AddTrailingStep();
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1040
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1041 SetKeepSource(*job, request);
2853
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1042
2869
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1043 OrthancRestApi::GetApi(call).SubmitCommandsJob
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1044 (call, job.release(), true /* synchronous by default */, request);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1045 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1046
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1047
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1048 void OrthancRestApi::RegisterAnonymizeModify()
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1049 {
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1050 Register("/instances/{id}/modify", ModifyInstance);
2639
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1051 Register("/series/{id}/modify", ModifyResource<ResourceType_Series>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1052 Register("/studies/{id}/modify", ModifyResource<ResourceType_Study>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1053 Register("/patients/{id}/modify", ModifyResource<ResourceType_Patient>);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1054
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1055 Register("/instances/{id}/anonymize", AnonymizeInstance);
2639
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1056 Register("/series/{id}/anonymize", AnonymizeResource<ResourceType_Series>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1057 Register("/studies/{id}/anonymize", AnonymizeResource<ResourceType_Study>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1058 Register("/patients/{id}/anonymize", AnonymizeResource<ResourceType_Patient>);
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1059
1120
009dce4ea2f6 /tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1010
diff changeset
1060 Register("/tools/create-dicom", CreateDicom);
2844
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1061
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1062 Register("/studies/{id}/split", SplitStudy);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1063 Register("/studies/{id}/merge", MergeStudy);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1064 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1065 }