Mercurial > hg > orthanc
annotate OrthancServer/FromDcmtkBridge.cpp @ 2245:f8d4f151f660
osimis address
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 04 Jan 2017 13:00:01 +0100 |
parents | a3a65de1840f |
children | e7a590cf72f9 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017 Osimis, Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
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33 |
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34 #include "PrecompiledHeadersServer.h" |
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35 |
71 | 36 #ifndef NOMINMAX |
37 #define NOMINMAX | |
38 #endif | |
0 | 39 |
40 #include "FromDcmtkBridge.h" | |
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41 #include "ToDcmtkBridge.h" |
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42 #include "../Core/Logging.h" |
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43 #include "../Core/SystemToolbox.h" |
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44 #include "../Core/Toolbox.h" |
2142 | 45 #include "../Core/TemporaryFile.h" |
62 | 46 #include "../Core/OrthancException.h" |
0 | 47 |
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48 #include <list> |
71 | 49 #include <limits> |
50 | |
0 | 51 #include <boost/lexical_cast.hpp> |
1656 | 52 #include <boost/filesystem.hpp> |
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53 #include <boost/algorithm/string/predicate.hpp> |
0 | 54 |
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55 #include <dcmtk/dcmdata/dcdeftag.h> |
0 | 56 #include <dcmtk/dcmdata/dcdicent.h> |
57 #include <dcmtk/dcmdata/dcdict.h> | |
58 #include <dcmtk/dcmdata/dcfilefo.h> | |
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59 #include <dcmtk/dcmdata/dcostrmb.h> |
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60 #include <dcmtk/dcmdata/dcpixel.h> |
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61 #include <dcmtk/dcmdata/dcuid.h> |
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62 #include <dcmtk/dcmdata/dcistrmb.h> |
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63 |
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64 #include <dcmtk/dcmdata/dcvrae.h> |
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65 #include <dcmtk/dcmdata/dcvras.h> |
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66 #include <dcmtk/dcmdata/dcvrat.h> |
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67 #include <dcmtk/dcmdata/dcvrcs.h> |
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68 #include <dcmtk/dcmdata/dcvrda.h> |
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69 #include <dcmtk/dcmdata/dcvrds.h> |
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70 #include <dcmtk/dcmdata/dcvrdt.h> |
0 | 71 #include <dcmtk/dcmdata/dcvrfd.h> |
72 #include <dcmtk/dcmdata/dcvrfl.h> | |
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73 #include <dcmtk/dcmdata/dcvris.h> |
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74 #include <dcmtk/dcmdata/dcvrlo.h> |
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75 #include <dcmtk/dcmdata/dcvrlt.h> |
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76 #include <dcmtk/dcmdata/dcvrpn.h> |
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77 #include <dcmtk/dcmdata/dcvrsh.h> |
0 | 78 #include <dcmtk/dcmdata/dcvrsl.h> |
79 #include <dcmtk/dcmdata/dcvrss.h> | |
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80 #include <dcmtk/dcmdata/dcvrst.h> |
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81 #include <dcmtk/dcmdata/dcvrtm.h> |
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82 #include <dcmtk/dcmdata/dcvrui.h> |
0 | 83 #include <dcmtk/dcmdata/dcvrul.h> |
84 #include <dcmtk/dcmdata/dcvrus.h> | |
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85 #include <dcmtk/dcmdata/dcvrut.h> |
0 | 86 |
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87 |
1930 | 88 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
89 #include <EmbeddedResources.h> | |
90 #endif | |
91 | |
92 | |
62 | 93 namespace Orthanc |
0 | 94 { |
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95 static inline uint16_t GetCharValue(char c) |
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96 { |
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97 if (c >= '0' && c <= '9') |
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98 return c - '0'; |
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99 else if (c >= 'a' && c <= 'f') |
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100 return c - 'a' + 10; |
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101 else if (c >= 'A' && c <= 'F') |
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102 return c - 'A' + 10; |
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103 else |
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104 return 0; |
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105 } |
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106 |
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107 static inline uint16_t GetTagValue(const char* c) |
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108 { |
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109 return ((GetCharValue(c[0]) << 12) + |
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110 (GetCharValue(c[1]) << 8) + |
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111 (GetCharValue(c[2]) << 4) + |
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112 GetCharValue(c[3])); |
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113 } |
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114 |
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115 |
1656 | 116 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
117 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary, | |
118 EmbeddedResources::FileResourceId resource) | |
119 { | |
2017 | 120 std::string content; |
121 EmbeddedResources::GetFileResource(content, resource); | |
1656 | 122 |
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123 TemporaryFile tmp; |
2017 | 124 tmp.Write(content); |
1656 | 125 |
126 if (!dictionary.loadDictionary(tmp.GetPath().c_str())) | |
127 { | |
2017 | 128 LOG(ERROR) << "Cannot read embedded dictionary. Under Windows, make sure that " |
129 << "your TEMP directory does not contain special characters."; | |
1656 | 130 throw OrthancException(ErrorCode_InternalError); |
131 } | |
132 } | |
133 | |
134 #else | |
135 static void LoadExternalDictionary(DcmDataDictionary& dictionary, | |
136 const std::string& directory, | |
137 const std::string& filename) | |
138 { | |
139 boost::filesystem::path p = directory; | |
140 p = p / filename; | |
141 | |
142 LOG(WARNING) << "Loading the external DICOM dictionary " << p; | |
143 | |
144 if (!dictionary.loadDictionary(p.string().c_str())) | |
145 { | |
146 throw OrthancException(ErrorCode_InternalError); | |
147 } | |
148 } | |
149 #endif | |
150 | |
151 | |
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152 namespace |
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153 { |
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154 class DictionaryLocker |
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155 { |
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156 private: |
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157 DcmDataDictionary& dictionary_; |
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158 |
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159 public: |
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160 DictionaryLocker() : dictionary_(dcmDataDict.wrlock()) |
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161 { |
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162 } |
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163 |
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164 ~DictionaryLocker() |
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165 { |
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166 dcmDataDict.unlock(); |
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167 } |
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168 |
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169 DcmDataDictionary& operator*() |
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170 { |
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171 return dictionary_; |
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172 } |
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173 |
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174 DcmDataDictionary* operator->() |
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175 { |
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176 return &dictionary_; |
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177 } |
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178 }; |
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179 } |
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180 |
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181 |
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182 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary) |
1656 | 183 { |
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184 { |
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185 DictionaryLocker locker; |
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186 |
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187 locker->clear(); |
1656 | 188 |
189 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 | |
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190 LOG(WARNING) << "Loading the embedded dictionaries"; |
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191 /** |
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192 * Do not load DICONDE dictionary, it breaks the other tags. The |
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193 * command "strace storescu 2>&1 |grep dic" shows that DICONDE |
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194 * dictionary is not loaded by storescu. |
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195 **/ |
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196 //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE); |
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198 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM); |
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199 |
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200 if (loadPrivateDictionary) |
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201 { |
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202 LOG(INFO) << "Loading the embedded dictionary of private tags"; |
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203 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE); |
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204 } |
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205 else |
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206 { |
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207 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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208 } |
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210 #elif defined(__linux__) || defined(__FreeBSD_kernel__) |
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211 std::string path = DCMTK_DICTIONARY_DIR; |
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213 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE); |
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214 if (env != NULL) |
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215 { |
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216 path = std::string(env); |
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217 } |
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219 LoadExternalDictionary(*locker, path, "dicom.dic"); |
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220 |
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221 if (loadPrivateDictionary) |
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222 { |
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223 LoadExternalDictionary(*locker, path, "private.dic"); |
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224 } |
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225 else |
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226 { |
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227 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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228 } |
1656 | 229 |
230 #else | |
231 #error Support your platform here | |
232 #endif | |
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233 } |
1656 | 234 |
235 /* make sure data dictionary is loaded */ | |
236 if (!dcmDataDict.isDictionaryLoaded()) | |
237 { | |
238 LOG(ERROR) << "No DICOM dictionary loaded, check environment variable: " << DCM_DICT_ENVIRONMENT_VARIABLE; | |
239 throw OrthancException(ErrorCode_InternalError); | |
240 } | |
241 | |
242 { | |
243 // Test the dictionary with a simple DICOM tag | |
244 DcmTag key(0x0010, 0x1030); // This is PatientWeight | |
245 if (key.getEVR() != EVR_DS) | |
246 { | |
247 LOG(ERROR) << "The DICOM dictionary has not been correctly read"; | |
248 throw OrthancException(ErrorCode_InternalError); | |
249 } | |
250 } | |
251 } | |
252 | |
253 | |
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254 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag, |
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255 ValueRepresentation vr, |
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256 const std::string& name, |
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257 unsigned int minMultiplicity, |
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258 unsigned int maxMultiplicity, |
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259 const std::string& privateCreator) |
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260 { |
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261 if (minMultiplicity < 1) |
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262 { |
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263 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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264 } |
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265 |
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266 bool arbitrary = false; |
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267 if (maxMultiplicity == 0) |
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268 { |
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269 maxMultiplicity = DcmVariableVM; |
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270 arbitrary = true; |
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271 } |
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272 else if (maxMultiplicity < minMultiplicity) |
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273 { |
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274 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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275 } |
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276 |
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277 DcmEVR evr = ToDcmtkBridge::Convert(vr); |
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278 |
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279 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " " |
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280 << name << " (multiplicity: " << minMultiplicity << "-" |
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281 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")"; |
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282 |
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283 std::auto_ptr<DcmDictEntry> entry; |
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284 if (privateCreator.empty()) |
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285 { |
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286 if (tag.GetGroup() % 2 == 1) |
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287 { |
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288 char buf[128]; |
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289 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), " |
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290 "but no private creator was associated with it", |
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291 tag.GetGroup(), tag.GetElement()); |
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292 LOG(WARNING) << buf; |
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293 } |
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294 |
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295 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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296 tag.GetElement(), |
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297 evr, name.c_str(), |
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298 static_cast<int>(minMultiplicity), |
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299 static_cast<int>(maxMultiplicity), |
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300 NULL /* version */, |
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301 OFTrue /* doCopyString */, |
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302 NULL /* private creator */)); |
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303 } |
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304 else |
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305 { |
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306 // "Private Data Elements have an odd Group Number that is not |
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307 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or |
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308 // (FFFF,eeee)." |
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309 if (tag.GetGroup() % 2 == 0 /* even */ || |
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310 tag.GetGroup() == 0x0001 || |
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311 tag.GetGroup() == 0x0003 || |
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312 tag.GetGroup() == 0x0005 || |
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313 tag.GetGroup() == 0x0007 || |
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314 tag.GetGroup() == 0xffff) |
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315 { |
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316 char buf[128]; |
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317 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009", |
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318 tag.GetGroup(), tag.GetElement()); |
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319 LOG(ERROR) << buf; |
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320 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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321 } |
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322 |
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323 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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324 tag.GetElement(), |
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325 evr, name.c_str(), |
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326 static_cast<int>(minMultiplicity), |
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327 static_cast<int>(maxMultiplicity), |
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328 "private" /* version */, |
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329 OFTrue /* doCopyString */, |
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330 privateCreator.c_str())); |
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331 } |
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332 |
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333 entry->setGroupRangeRestriction(DcmDictRange_Unspecified); |
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334 entry->setElementRangeRestriction(DcmDictRange_Unspecified); |
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335 |
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336 { |
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337 DictionaryLocker locker; |
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338 |
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339 if (locker->findEntry(name.c_str())) |
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340 { |
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341 LOG(ERROR) << "Cannot register two tags with the same symbolic name \"" << name << "\""; |
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342 throw OrthancException(ErrorCode_AlreadyExistingTag); |
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343 } |
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344 |
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345 locker->addEntry(entry.release()); |
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346 } |
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347 } |
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348 |
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349 |
1936 | 350 Encoding FromDcmtkBridge::DetectEncoding(DcmItem& dataset, |
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351 Encoding defaultEncoding) |
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352 { |
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353 Encoding encoding = defaultEncoding; |
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354 |
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355 OFString tmp; |
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356 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good()) |
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357 { |
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358 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str())); |
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359 |
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360 if (characterSet.empty()) |
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361 { |
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362 // Empty specific character set tag: Use the default encoding |
1087 | 363 } |
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364 else if (GetDicomEncoding(encoding, characterSet.c_str())) |
1087 | 365 { |
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366 // The specific character set is supported by the Orthanc core |
1087 | 367 } |
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368 else |
1087 | 369 { |
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370 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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371 << ", fallback to ASCII (remove all special characters)"; |
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372 encoding = Encoding_Ascii; |
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373 } |
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374 } |
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375 else |
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376 { |
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377 // No specific character set tag: Use the default encoding |
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378 } |
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379 |
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380 return encoding; |
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381 } |
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382 |
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383 |
2125 | 384 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, |
385 DcmItem& dataset, | |
386 unsigned int maxStringLength, | |
387 Encoding defaultEncoding) | |
0 | 388 { |
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389 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
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390 |
0 | 391 target.Clear(); |
392 for (unsigned long i = 0; i < dataset.card(); i++) | |
393 { | |
394 DcmElement* element = dataset.getElement(i); | |
395 if (element && element->isLeaf()) | |
396 { | |
397 target.SetValue(element->getTag().getGTag(), | |
398 element->getTag().getETag(), | |
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399 ConvertLeafElement(*element, DicomToJsonFlags_Default, maxStringLength, encoding)); |
0 | 400 } |
401 } | |
402 } | |
403 | |
404 | |
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405 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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406 { |
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407 return DicomTag(tag.getGTag(), tag.getETag()); |
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408 } |
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409 |
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410 |
0 | 411 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
412 { | |
413 return DicomTag(element.getGTag(), element.getETag()); | |
414 } | |
415 | |
416 | |
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417 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
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418 DicomToJsonFlags flags, |
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419 unsigned int maxStringLength, |
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420 Encoding encoding) |
0 | 421 { |
422 if (!element.isLeaf()) | |
423 { | |
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424 // This function is only applicable to leaf elements |
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425 throw OrthancException(ErrorCode_BadParameterType); |
0 | 426 } |
427 | |
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428 char *c = NULL; |
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429 if (element.isaString() && |
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430 element.getString(c).good()) |
0 | 431 { |
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432 if (c == NULL) // This case corresponds to the empty string |
0 | 433 { |
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434 return new DicomValue("", false); |
0 | 435 } |
436 else | |
437 { | |
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438 std::string s(c); |
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439 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding); |
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440 |
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441 if (maxStringLength != 0 && |
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442 utf8.size() > maxStringLength) |
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443 { |
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444 return new DicomValue; // Too long, create a NULL value |
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445 } |
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446 else |
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447 { |
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448 return new DicomValue(utf8, false); |
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449 } |
0 | 450 } |
451 } | |
452 | |
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453 |
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454 if (element.getVR() == EVR_UN) |
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455 { |
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456 // Unknown value representation: Lookup in the dictionary. This |
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457 // is notably the case for private tags registered with the |
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458 // "Dictionary" configuration option. |
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459 DictionaryLocker locker; |
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460 |
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461 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), |
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462 element.getTag().getPrivateCreator()); |
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463 if (entry != NULL && |
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464 entry->getVR().isaString()) |
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465 { |
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466 Uint8* data = NULL; |
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467 |
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468 // At (*), we do not try and convert to UTF-8, as nothing says |
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469 // the encoding of the private tag is the same as that of the |
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470 // remaining of the DICOM dataset. Only go for ASCII strings. |
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471 |
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472 if (element.getUint8Array(data) == EC_Normal && |
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473 Toolbox::IsAsciiString(data, element.getLength())) // (*) |
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474 { |
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475 if (data == NULL) |
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476 { |
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477 return new DicomValue("", false); // Empty string |
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478 } |
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479 else if (maxStringLength != 0 && |
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480 element.getLength() > maxStringLength) |
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481 { |
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482 return new DicomValue; // Too long, create a NULL value |
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483 } |
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484 else |
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485 { |
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486 std::string s(reinterpret_cast<const char*>(data), element.getLength()); |
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487 return new DicomValue(s, false); |
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488 } |
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489 } |
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490 } |
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491 } |
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492 |
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493 |
0 | 494 try |
495 { | |
496 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
497 switch (element.getVR()) | |
498 { | |
499 | |
500 /** | |
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501 * Deal with binary data (including PixelData). |
0 | 502 **/ |
306
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503 |
302
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504 case EVR_OB: // other byte |
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505 case EVR_OF: // other float |
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506 case EVR_OW: // other word |
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507 case EVR_UN: // unknown value representation |
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508 case EVR_ox: // OB or OW depending on context |
306
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509 case EVR_DS: // decimal string |
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510 case EVR_IS: // integer string |
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511 case EVR_AS: // age string |
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512 case EVR_DA: // date string |
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513 case EVR_DT: // date time string |
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514 case EVR_TM: // time string |
302
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515 case EVR_AE: // application entity title |
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516 case EVR_CS: // code string |
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517 case EVR_SH: // short string |
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518 case EVR_LO: // long string |
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519 case EVR_ST: // short text |
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520 case EVR_LT: // long text |
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521 case EVR_UT: // unlimited text |
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522 case EVR_PN: // person name |
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523 case EVR_UI: // unique identifier |
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524 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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525 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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|
526 { |
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527 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull)) |
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ParsedDicomFile::CreateFromJson
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|
528 { |
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529 Uint8* data = NULL; |
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530 if (element.getUint8Array(data) == EC_Normal) |
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531 { |
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532 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true); |
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533 } |
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534 } |
0 | 535 |
1818
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536 return new DicomValue; |
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537 } |
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538 |
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|
539 /** |
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diff
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|
540 * Numeric types |
1818
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541 **/ |
0 | 542 |
302
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543 case EVR_SL: // signed long |
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544 { |
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545 Sint32 f; |
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546 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good()) |
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547 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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548 else |
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549 return new DicomValue; |
302
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550 } |
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551 |
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552 case EVR_SS: // signed short |
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553 { |
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554 Sint16 f; |
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555 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good()) |
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556 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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557 else |
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|
558 return new DicomValue; |
302
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|
559 } |
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560 |
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561 case EVR_UL: // unsigned long |
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562 { |
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563 Uint32 f; |
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564 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good()) |
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565 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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566 else |
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567 return new DicomValue; |
302
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568 } |
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569 |
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570 case EVR_US: // unsigned short |
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571 { |
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572 Uint16 f; |
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573 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good()) |
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574 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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575 else |
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576 return new DicomValue; |
302
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|
577 } |
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|
578 |
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579 case EVR_FL: // float single-precision |
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580 { |
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|
581 Float32 f; |
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|
582 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good()) |
1737
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583 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
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584 else |
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585 return new DicomValue; |
302
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586 } |
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587 |
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588 case EVR_FD: // float double-precision |
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589 { |
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590 Float64 f; |
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591 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good()) |
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592 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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593 else |
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594 return new DicomValue; |
1131 | 595 } |
596 | |
597 | |
598 /** | |
599 * Attribute tag. | |
600 **/ | |
601 | |
602 case EVR_AT: | |
603 { | |
1147 | 604 DcmTagKey tag; |
605 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
606 { | |
607 DicomTag t(tag.getGroup(), tag.getElement()); | |
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608 return new DicomValue(t.Format(), false); |
1147 | 609 } |
1131 | 610 else |
1147 | 611 { |
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612 return new DicomValue; |
1147 | 613 } |
302
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614 } |
0 | 615 |
616 | |
617 /** | |
302
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618 * Sequence types, should never occur at this point because of |
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619 * "element.isLeaf()". |
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620 **/ |
0 | 621 |
302
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622 case EVR_SQ: // sequence of items |
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623 return new DicomValue; |
0 | 624 |
625 | |
302
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626 /** |
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627 * Internal to DCMTK. |
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628 **/ |
0 | 629 |
302
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630 case EVR_xs: // SS or US depending on context |
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631 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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632 case EVR_na: // na="not applicable", for data which has no VR |
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633 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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634 case EVR_item: // used internally for items |
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635 case EVR_metainfo: // used internally for meta info datasets |
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636 case EVR_dataset: // used internally for datasets |
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637 case EVR_fileFormat: // used internally for DICOM files |
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638 case EVR_dicomDir: // used internally for DICOMDIR objects |
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639 case EVR_dirRecord: // used internally for DICOMDIR records |
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640 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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641 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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642 case EVR_PixelData: // used internally for uncompressed pixeld data |
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643 case EVR_OverlayData: // used internally for overlay data |
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644 return new DicomValue; |
0 | 645 |
646 | |
302
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647 /** |
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648 * Default case. |
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649 **/ |
0 | 650 |
302
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651 default: |
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652 return new DicomValue; |
0 | 653 } |
654 } | |
655 catch (boost::bad_lexical_cast) | |
656 { | |
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657 return new DicomValue; |
0 | 658 } |
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659 catch (std::bad_cast) |
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660 { |
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661 return new DicomValue; |
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662 } |
0 | 663 } |
664 | |
665 | |
1687 | 666 static Json::Value& PrepareNode(Json::Value& parent, |
667 DcmElement& element, | |
668 DicomToJsonFormat format) | |
0 | 669 { |
1687 | 670 assert(parent.type() == Json::objectValue); |
0 | 671 |
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672 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
305
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673 const std::string formattedTag = tag.Format(); |
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674 |
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675 if (format == DicomToJsonFormat_Short) |
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676 { |
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677 parent[formattedTag] = Json::nullValue; |
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678 return parent[formattedTag]; |
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679 } |
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680 |
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681 // This code gives access to the name of the private tags |
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682 std::string tagName = FromDcmtkBridge::GetTagName(element); |
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683 |
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684 switch (format) |
0 | 685 { |
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686 case DicomToJsonFormat_Human: |
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687 parent[tagName] = Json::nullValue; |
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688 return parent[tagName]; |
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689 |
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690 case DicomToJsonFormat_Full: |
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691 { |
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692 parent[formattedTag] = Json::objectValue; |
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693 Json::Value& node = parent[formattedTag]; |
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694 |
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695 if (element.isLeaf()) |
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696 { |
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697 node["Name"] = tagName; |
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698 |
2076 | 699 if (element.getTag().getPrivateCreator() != NULL) |
1688
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700 { |
2076 | 701 node["PrivateCreator"] = element.getTag().getPrivateCreator(); |
1688
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702 } |
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703 |
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704 return node; |
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705 } |
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706 else |
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707 { |
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708 node["Name"] = tagName; |
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709 node["Type"] = "Sequence"; |
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710 node["Value"] = Json::nullValue; |
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711 return node["Value"]; |
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712 } |
306
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713 } |
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714 |
1688
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715 default: |
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|
716 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 717 } |
718 } | |
719 | |
720 | |
721 static void LeafValueToJson(Json::Value& target, | |
722 const DicomValue& value, | |
723 DicomToJsonFormat format, | |
1738
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DicomToJsonFlags_IncludeBinary
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724 DicomToJsonFlags flags, |
1688
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725 unsigned int maxStringLength) |
1687 | 726 { |
1738
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727 Json::Value* targetValue = NULL; |
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728 Json::Value* targetType = NULL; |
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|
729 |
1688
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|
730 switch (format) |
1687 | 731 { |
1688
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|
732 case DicomToJsonFormat_Short: |
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|
733 case DicomToJsonFormat_Human: |
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734 { |
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DicomToJsonFormat enumeration
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735 assert(target.type() == Json::nullValue); |
1738
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736 targetValue = ⌖ |
1688
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737 break; |
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738 } |
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|
739 |
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740 case DicomToJsonFormat_Full: |
0 | 741 { |
1688
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|
742 assert(target.type() == Json::objectValue); |
1738
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|
743 target["Value"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
744 target["Type"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
745 targetType = &target["Type"]; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
746 targetValue = &target["Value"]; |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
747 break; |
0 | 748 } |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
749 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
750 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
751 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 752 } |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
753 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
754 assert(targetValue != NULL); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
755 assert(targetValue->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
756 assert(targetType == NULL || targetType->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
757 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
758 if (value.IsNull()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
759 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
760 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
761 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
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parents:
1737
diff
changeset
|
762 *targetType = "Null"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
763 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
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parents:
1737
diff
changeset
|
764 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
765 else if (value.IsBinary()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
766 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
767 if (flags & DicomToJsonFlags_ConvertBinaryToAscii) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
768 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
769 *targetValue = Toolbox::ConvertToAscii(value.GetContent()); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
770 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
771 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
772 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
773 std::string s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
774 value.FormatDataUriScheme(s); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
775 *targetValue = s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
776 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
777 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
778 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
779 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
780 *targetType = "Binary"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
781 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
782 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
783 else if (maxStringLength == 0 || |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
784 value.GetContent().size() <= maxStringLength) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
785 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
786 *targetValue = value.GetContent(); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
787 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
788 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
789 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
790 *targetType = "String"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
791 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
792 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
793 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
794 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
795 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
796 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
797 *targetType = "TooLong"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
798 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
799 } |
1687 | 800 } |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
801 |
1687 | 802 |
2126 | 803 void FromDcmtkBridge::ElementToJson(Json::Value& parent, |
804 DcmElement& element, | |
805 DicomToJsonFormat format, | |
806 DicomToJsonFlags flags, | |
807 unsigned int maxStringLength, | |
808 Encoding encoding) | |
1687 | 809 { |
1691 | 810 if (parent.type() == Json::nullValue) |
811 { | |
812 parent = Json::objectValue; | |
813 } | |
814 | |
815 assert(parent.type() == Json::objectValue); | |
1687 | 816 Json::Value& target = PrepareNode(parent, element, format); |
817 | |
818 if (element.isLeaf()) | |
819 { | |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
820 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
821 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element, flags, 0, encoding)); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
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parents:
1737
diff
changeset
|
822 LeafValueToJson(target, *v, format, flags, maxStringLength); |
0 | 823 } |
824 else | |
825 { | |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
826 assert(target.type() == Json::nullValue); |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
827 target = Json::arrayValue; |
0 | 828 |
829 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
830 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
1687 | 831 // etc. are not." The following dynamic_cast is thus OK. |
0 | 832 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
833 | |
834 for (unsigned long i = 0; i < sequence.card(); i++) | |
835 { | |
836 DcmItem* child = sequence.getItem(i); | |
1687 | 837 Json::Value& v = target.append(Json::objectValue); |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
838 DatasetToJson(v, *child, format, flags, maxStringLength, encoding); |
1687 | 839 } |
0 | 840 } |
841 } | |
842 | |
843 | |
2126 | 844 void FromDcmtkBridge::DatasetToJson(Json::Value& parent, |
845 DcmItem& item, | |
846 DicomToJsonFormat format, | |
847 DicomToJsonFlags flags, | |
848 unsigned int maxStringLength, | |
849 Encoding encoding) | |
1686 | 850 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
851 assert(parent.type() == Json::objectValue); |
1686 | 852 |
853 for (unsigned long i = 0; i < item.card(); i++) | |
854 { | |
855 DcmElement* element = item.getElement(i); | |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
856 if (element == NULL) |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
857 { |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
858 throw OrthancException(ErrorCode_InternalError); |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
859 } |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
860 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
861 DicomTag tag(FromDcmtkBridge::Convert(element->getTag())); |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
862 |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
863 /*element->getTag().isPrivate()*/ |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
864 if (tag.IsPrivate() && |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
865 !(flags & DicomToJsonFlags_IncludePrivateTags)) |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
866 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
867 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
868 } |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
869 |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
870 if (!(flags & DicomToJsonFlags_IncludeUnknownTags)) |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
871 { |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
872 DictionaryLocker locker; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
873 if (locker->findEntry(element->getTag(), NULL) == NULL) |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
874 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
875 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
876 } |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
877 } |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
878 |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
879 DcmEVR evr = element->getTag().getEVR(); |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
880 if (evr == EVR_OB || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
881 evr == EVR_OF || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
882 evr == EVR_OW || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
883 evr == EVR_UN || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
884 evr == EVR_ox) |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
885 { |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
886 // This is a binary tag |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
887 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
888 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary))) |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
889 { |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
890 continue; |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
891 } |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
892 } |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
893 |
2126 | 894 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, maxStringLength, encoding); |
1686 | 895 } |
896 } | |
897 | |
898 | |
2126 | 899 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
900 DcmDataset& dataset, | |
901 DicomToJsonFormat format, | |
902 DicomToJsonFlags flags, | |
2131 | 903 unsigned int maxStringLength, |
904 Encoding defaultEncoding) | |
0 | 905 { |
2131 | 906 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
2126 | 907 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
908 target = Json::objectValue; |
2126 | 909 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding); |
0 | 910 } |
911 | |
912 | |
2126 | 913 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target, |
914 DcmMetaInfo& dataset, | |
915 DicomToJsonFormat format, | |
916 DicomToJsonFlags flags, | |
917 unsigned int maxStringLength) | |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
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918 { |
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919 target = Json::objectValue; |
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920 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii); |
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921 } |
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922 |
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923 |
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924 |
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925 static std::string GetTagNameInternal(DcmTag& tag) |
0 | 926 { |
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927 { |
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928 // Some patches for important tags because of different DICOM |
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929 // dictionaries between DCMTK versions |
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930 DicomTag tmp(tag.getGroup(), tag.getElement()); |
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931 std::string n = tmp.GetMainTagsName(); |
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932 if (n.size() != 0) |
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933 { |
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934 return n; |
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935 } |
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936 // End of patches |
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937 } |
106 | 938 |
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939 #if 0 |
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940 // This version explicitly calls the dictionary |
0 | 941 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
942 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
943 | |
306
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944 std::string s(DcmTag_ERROR_TagName); |
0 | 945 if (entry != NULL) |
946 { | |
947 s = std::string(entry->getTagName()); | |
948 } | |
949 | |
950 dcmDataDict.unlock(); | |
951 return s; | |
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952 #else |
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953 const char* name = tag.getTagName(); |
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954 if (name == NULL) |
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955 { |
306
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956 return DcmTag_ERROR_TagName; |
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957 } |
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958 else |
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959 { |
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960 return std::string(name); |
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961 } |
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962 #endif |
0 | 963 } |
964 | |
965 | |
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966 std::string FromDcmtkBridge::GetTagName(const DicomTag& t, |
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967 const std::string& privateCreator) |
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968 { |
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969 DcmTag tag(t.GetGroup(), t.GetElement()); |
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970 |
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971 if (!privateCreator.empty()) |
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972 { |
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973 tag.setPrivateCreator(privateCreator.c_str()); |
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974 } |
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975 |
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976 return GetTagNameInternal(tag); |
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977 } |
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978 |
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979 |
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980 std::string FromDcmtkBridge::GetTagName(const DcmElement& element) |
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981 { |
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982 // Copy the tag to ensure const-correctness of DcmElement. Note |
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983 // that the private creator information is also copied. |
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984 DcmTag tag(element.getTag()); |
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985 |
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986 return GetTagNameInternal(tag); |
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987 } |
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988 |
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989 |
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990 |
304 | 991 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
0 | 992 { |
304 | 993 if (strlen(name) == 9 && |
994 isxdigit(name[0]) && | |
995 isxdigit(name[1]) && | |
996 isxdigit(name[2]) && | |
997 isxdigit(name[3]) && | |
991
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998 (name[4] == '-' || name[4] == ',') && |
304 | 999 isxdigit(name[5]) && |
1000 isxdigit(name[6]) && | |
1001 isxdigit(name[7]) && | |
1002 isxdigit(name[8])) | |
1003 { | |
1004 uint16_t group = GetTagValue(name); | |
1005 uint16_t element = GetTagValue(name + 5); | |
1006 return DicomTag(group, element); | |
1007 } | |
1008 | |
1861
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1009 if (strlen(name) == 8 && |
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1010 isxdigit(name[0]) && |
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1011 isxdigit(name[1]) && |
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1012 isxdigit(name[2]) && |
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1013 isxdigit(name[3]) && |
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1014 isxdigit(name[4]) && |
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1015 isxdigit(name[5]) && |
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1016 isxdigit(name[6]) && |
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1017 isxdigit(name[7])) |
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1018 { |
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1019 uint16_t group = GetTagValue(name); |
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1020 uint16_t element = GetTagValue(name + 4); |
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1021 return DicomTag(group, element); |
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1022 } |
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1023 |
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1024 #if 0 |
0 | 1025 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1026 const DcmDictEntry* entry = dict.findEntry(name); | |
1027 | |
1028 if (entry == NULL) | |
1029 { | |
1030 dcmDataDict.unlock(); | |
1582
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1031 throw OrthancException(ErrorCode_UnknownDicomTag); |
0 | 1032 } |
1033 else | |
1034 { | |
1035 DcmTagKey key = entry->getKey(); | |
1036 DicomTag tag(key.getGroup(), key.getElement()); | |
1037 dcmDataDict.unlock(); | |
1038 return tag; | |
1039 } | |
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1040 #else |
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1041 DcmTag tag; |
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1042 if (DcmTag::findTagFromName(name, tag).good()) |
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1043 { |
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1044 return DicomTag(tag.getGTag(), tag.getETag()); |
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1045 } |
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1046 else |
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1047 { |
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1048 throw OrthancException(ErrorCode_UnknownDicomTag); |
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1049 } |
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1050 #endif |
0 | 1051 } |
1052 | |
1053 | |
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1054 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag) |
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1055 { |
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1056 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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1057 return tmp.isUnknownVR(); |
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1058 } |
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1059 |
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1060 |
0 | 1061 void FromDcmtkBridge::ToJson(Json::Value& result, |
1368 | 1062 const DicomMap& values, |
1063 bool simplify) | |
0 | 1064 { |
1065 if (result.type() != Json::objectValue) | |
1066 { | |
62 | 1067 throw OrthancException(ErrorCode_BadParameterType); |
0 | 1068 } |
1069 | |
1070 result.clear(); | |
1071 | |
1072 for (DicomMap::Map::const_iterator | |
656 | 1073 it = values.map_.begin(); it != values.map_.end(); ++it) |
0 | 1074 { |
2115
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1075 // TODO Inject PrivateCreator if some is available in the DicomMap? |
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1076 const std::string tagName = GetTagName(it->first, ""); |
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1077 |
1368 | 1078 if (simplify) |
1079 { | |
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1080 if (it->second->IsNull()) |
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1081 { |
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1082 result[tagName] = Json::nullValue; |
1737
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1083 } |
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1084 else |
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1085 { |
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1086 // TODO IsBinary |
2115
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1087 result[tagName] = it->second->GetContent(); |
1737
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|
1088 } |
1368 | 1089 } |
1090 else | |
1091 { | |
1092 Json::Value value = Json::objectValue; | |
1093 | |
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|
1094 value["Name"] = tagName; |
1368 | 1095 |
1096 if (it->second->IsNull()) | |
1097 { | |
1098 value["Type"] = "Null"; | |
1099 value["Value"] = Json::nullValue; | |
1100 } | |
1101 else | |
1102 { | |
1737
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diff
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|
1103 // TODO IsBinary |
1368 | 1104 value["Type"] = "String"; |
1737
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diff
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|
1105 value["Value"] = it->second->GetContent(); |
1368 | 1106 } |
1107 | |
1108 result[it->first.Format()] = value; | |
1109 } | |
0 | 1110 } |
1111 } | |
176 | 1112 |
1113 | |
788 | 1114 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
176 | 1115 { |
1116 char uid[100]; | |
1117 | |
1118 switch (level) | |
1119 { | |
788 | 1120 case ResourceType_Patient: |
311 | 1121 // The "PatientID" field is of type LO (Long String), 64 |
1122 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
1123 // as a random PatientID. | |
2172
84d1d392a9ab
GenerateUuid() not available in sandboxed environments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1124 return SystemToolbox::GenerateUuid(); |
306
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diff
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|
1125 |
788 | 1126 case ResourceType_Instance: |
302
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291
diff
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|
1127 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
176 | 1128 |
788 | 1129 case ResourceType_Series: |
302
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|
1130 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
176 | 1131 |
788 | 1132 case ResourceType_Study: |
302
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1133 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
176 | 1134 |
302
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|
1135 default: |
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|
1136 throw OrthancException(ErrorCode_ParameterOutOfRange); |
176 | 1137 } |
1138 } | |
1139 | |
291
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|
1140 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
1004
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diff
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|
1141 DcmDataset& dataSet) |
291
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1142 { |
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1143 // Determine the transfer syntax which shall be used to write the |
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1144 // information to the file. We always switch to the Little Endian |
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1145 // syntax, with explicit length. |
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1146 |
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1147 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
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1148 |
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1149 |
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1150 /** |
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diff
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1151 * Note that up to Orthanc 0.7.1 (inclusive), the |
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1152 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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1153 * dataset into memory. We now keep the original transfer syntax |
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diff
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|
1154 * (if available). |
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|
1155 **/ |
1004
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DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
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|
1156 E_TransferSyntax xfer = dataSet.getOriginalXfer(); |
661
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diff
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|
1157 if (xfer == EXS_Unknown) |
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1158 { |
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|
1159 // No information about the original transfer syntax: This is |
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diff
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|
1160 // most probably a DICOM dataset that was read from memory. |
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|
1161 xfer = EXS_LittleEndianExplicit; |
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|
1162 } |
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|
1163 |
291
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1164 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
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1165 |
661
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diff
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|
1166 // Create the meta-header information |
1004
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DicomInstanceToStore
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parents:
991
diff
changeset
|
1167 DcmFileFormat ff(&dataSet); |
661
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diff
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|
1168 ff.validateMetaInfo(xfer); |
1316
1c8dfedefefe
Fix anonymization generating non-portable DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
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1307
diff
changeset
|
1169 ff.removeInvalidGroups(); |
291
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1170 |
661
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diff
changeset
|
1171 // Create a memory buffer with the proper size |
1876
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diff
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|
1172 { |
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diff
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|
1173 const uint32_t estimatedSize = ff.calcElementLength(xfer, encodingType); // (*) |
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diff
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|
1174 buffer.resize(estimatedSize); |
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|
1175 } |
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diff
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|
1176 |
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diff
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|
1177 DcmOutputBufferStream ob(&buffer[0], buffer.size()); |
291
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1178 |
661
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diff
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|
1179 // Fill the memory buffer with the meta-header and the dataset |
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|
1180 ff.transferInit(); |
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|
1181 OFCondition c = ff.write(ob, xfer, encodingType, NULL, |
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|
1182 /*opt_groupLength*/ EGL_recalcGL, |
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|
1183 /*opt_paddingType*/ EPD_withoutPadding); |
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|
1184 ff.transferEnd(); |
291
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1185 |
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|
1186 if (c.good()) |
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|
1187 { |
1876
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|
1188 // The DICOM file is successfully written, truncate the target |
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|
1189 // buffer if its size was overestimated by (*) |
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|
1190 ob.flush(); |
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1191 |
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diff
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|
1192 size_t effectiveSize = static_cast<size_t>(ob.tell()); |
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1193 if (effectiveSize < buffer.size()) |
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1194 { |
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|
1195 buffer.resize(effectiveSize); |
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1196 } |
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1197 |
291
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1198 return true; |
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1199 } |
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1200 else |
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1201 { |
1876
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1202 // Error |
291
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1203 buffer.clear(); |
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1204 return false; |
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1205 } |
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1206 } |
1360 | 1207 |
1208 | |
2006
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diff
changeset
|
1209 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag) |
1360 | 1210 { |
1211 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
2006
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diff
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1212 return Convert(t.getEVR()); |
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diff
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1213 } |
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1214 |
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|
1215 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr) |
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diff
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1216 { |
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diff
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|
1217 switch (vr) |
1417
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diff
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|
1218 { |
2006
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diff
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|
1219 case EVR_AE: |
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|
1220 return ValueRepresentation_ApplicationEntity; |
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diff
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1221 |
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diff
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|
1222 case EVR_AS: |
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|
1223 return ValueRepresentation_AgeString; |
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diff
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1224 |
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diff
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|
1225 case EVR_AT: |
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diff
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|
1226 return ValueRepresentation_AttributeTag; |
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1998
diff
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|
1227 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1228 case EVR_CS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1229 return ValueRepresentation_CodeString; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1230 |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1231 case EVR_DA: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1232 return ValueRepresentation_Date; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1233 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1234 case EVR_DS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1235 return ValueRepresentation_DecimalString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1236 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1237 case EVR_DT: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1238 return ValueRepresentation_DateTime; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1239 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1240 case EVR_FL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1241 return ValueRepresentation_FloatingPointSingle; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1242 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1243 case EVR_FD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1244 return ValueRepresentation_FloatingPointDouble; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1245 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1246 case EVR_IS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1247 return ValueRepresentation_IntegerString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1248 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1249 case EVR_LO: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1250 return ValueRepresentation_LongString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1251 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1252 case EVR_LT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1253 return ValueRepresentation_LongText; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1254 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1255 case EVR_OB: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1256 return ValueRepresentation_OtherByte; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1257 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1258 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1259 /*case EVR_OD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1260 return ValueRepresentation_OtherDouble;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1261 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1262 case EVR_OF: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1263 return ValueRepresentation_OtherFloat; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1264 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1265 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1266 /*case EVR_OL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1267 return ValueRepresentation_OtherLong;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1268 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1269 case EVR_OW: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1270 return ValueRepresentation_OtherWord; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1271 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1272 case EVR_PN: |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1273 return ValueRepresentation_PersonName; |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1274 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1275 case EVR_SH: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1276 return ValueRepresentation_ShortString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1277 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1278 case EVR_SL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1279 return ValueRepresentation_SignedLong; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1280 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1281 case EVR_SQ: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1282 return ValueRepresentation_Sequence; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1283 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1284 case EVR_SS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1285 return ValueRepresentation_SignedShort; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1286 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1287 case EVR_ST: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1288 return ValueRepresentation_ShortText; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1289 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1290 case EVR_TM: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1291 return ValueRepresentation_Time; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1292 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1293 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1294 /*case EVR_UC: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1295 return ValueRepresentation_UnlimitedCharacters;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1296 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1297 case EVR_UI: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1298 return ValueRepresentation_UniqueIdentifier; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1299 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1300 case EVR_UL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1301 return ValueRepresentation_UnsignedLong; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1302 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1303 case EVR_UN: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1304 return ValueRepresentation_Unknown; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1305 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1306 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1307 /*case EVR_UR: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1308 return ValueRepresentation_UniversalResource;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1309 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1310 case EVR_US: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1311 return ValueRepresentation_UnsignedShort; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1312 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1313 case EVR_UT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1314 return ValueRepresentation_UnlimitedText; |
1792 | 1315 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1316 default: |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1317 return ValueRepresentation_NotSupported; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1318 } |
1360 | 1319 } |
1320 | |
1689 | 1321 |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1322 static bool IsBinaryTag(const DcmTag& key) |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1323 { |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1324 return (key.isUnknownVR() || |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1325 key.getEVR() == EVR_OB || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1326 key.getEVR() == EVR_OF || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1327 key.getEVR() == EVR_OW || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1328 key.getEVR() == EVR_UN || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1329 key.getEVR() == EVR_ox); |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1330 } |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1331 |
1689 | 1332 |
1333 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag) | |
1334 { | |
1335 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1336 | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1337 if (tag.IsPrivate() || |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1338 IsBinaryTag(key)) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1339 { |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1340 return new DcmOtherByteOtherWord(key); |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1341 } |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1342 |
1689 | 1343 switch (key.getEVR()) |
1344 { | |
1345 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1346 | |
1347 /** | |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1348 * Binary types, handled above |
1689 | 1349 **/ |
1350 | |
1351 case EVR_OB: // other byte | |
1352 case EVR_OF: // other float | |
1353 case EVR_OW: // other word | |
1354 case EVR_UN: // unknown value representation | |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1355 case EVR_ox: // OB or OW depending on context |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1356 throw OrthancException(ErrorCode_InternalError); |
1689 | 1357 |
1358 | |
1359 /** | |
1360 * String types. | |
1361 * http://support.dcmtk.org/docs/classDcmByteString.html | |
1362 **/ | |
1363 | |
1364 case EVR_AS: // age string | |
1365 return new DcmAgeString(key); | |
1366 | |
1367 case EVR_AE: // application entity title | |
1368 return new DcmApplicationEntity(key); | |
1369 | |
1370 case EVR_CS: // code string | |
1371 return new DcmCodeString(key); | |
1372 | |
1373 case EVR_DA: // date string | |
1374 return new DcmDate(key); | |
1375 | |
1376 case EVR_DT: // date time string | |
1377 return new DcmDateTime(key); | |
1378 | |
1379 case EVR_DS: // decimal string | |
1380 return new DcmDecimalString(key); | |
1381 | |
1382 case EVR_IS: // integer string | |
1383 return new DcmIntegerString(key); | |
1384 | |
1385 case EVR_TM: // time string | |
1386 return new DcmTime(key); | |
1387 | |
1388 case EVR_UI: // unique identifier | |
1389 return new DcmUniqueIdentifier(key); | |
1390 | |
1391 case EVR_ST: // short text | |
1392 return new DcmShortText(key); | |
1393 | |
1394 case EVR_LO: // long string | |
1395 return new DcmLongString(key); | |
1396 | |
1397 case EVR_LT: // long text | |
1398 return new DcmLongText(key); | |
1399 | |
1400 case EVR_UT: // unlimited text | |
1401 return new DcmUnlimitedText(key); | |
1402 | |
1403 case EVR_SH: // short string | |
1404 return new DcmShortString(key); | |
1405 | |
1406 case EVR_PN: // person name | |
1407 return new DcmPersonName(key); | |
1408 | |
1409 | |
1410 /** | |
1411 * Numerical types | |
1412 **/ | |
1413 | |
1414 case EVR_SL: // signed long | |
1415 return new DcmSignedLong(key); | |
1416 | |
1417 case EVR_SS: // signed short | |
1418 return new DcmSignedShort(key); | |
1419 | |
1420 case EVR_UL: // unsigned long | |
1421 return new DcmUnsignedLong(key); | |
1422 | |
1423 case EVR_US: // unsigned short | |
1424 return new DcmUnsignedShort(key); | |
1425 | |
1426 case EVR_FL: // float single-precision | |
1427 return new DcmFloatingPointSingle(key); | |
1428 | |
1429 case EVR_FD: // float double-precision | |
1430 return new DcmFloatingPointDouble(key); | |
1431 | |
1432 | |
1433 /** | |
1434 * Sequence types, should never occur at this point. | |
1435 **/ | |
1436 | |
1437 case EVR_SQ: // sequence of items | |
1438 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1439 | |
1440 | |
1441 /** | |
1739
df331354cea2
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Sebastien Jodogne <s.jodogne@gmail.com>
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1738
diff
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1442 * TODO |
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1443 **/ |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1444 |
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diff
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1445 case EVR_AT: // attribute tag |
df331354cea2
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
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|
1446 throw OrthancException(ErrorCode_NotImplemented); |
df331354cea2
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1738
diff
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|
1447 |
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1738
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|
1448 |
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diff
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|
1449 /** |
1689 | 1450 * Internal to DCMTK. |
1451 **/ | |
1452 | |
1453 case EVR_xs: // SS or US depending on context | |
1454 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1455 case EVR_na: // na="not applicable", for data which has no VR | |
1456 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1457 case EVR_item: // used internally for items | |
1458 case EVR_metainfo: // used internally for meta info datasets | |
1459 case EVR_dataset: // used internally for datasets | |
1460 case EVR_fileFormat: // used internally for DICOM files | |
1461 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1462 case EVR_dirRecord: // used internally for DICOMDIR records | |
1463 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1464 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1465 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1466 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1467 case EVR_OverlayData: // used internally for overlay data | |
1468 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1469 default: | |
1470 break; | |
1471 } | |
1472 | |
1473 throw OrthancException(ErrorCode_InternalError); | |
1474 } | |
1475 | |
1476 | |
1477 | |
1478 void FromDcmtkBridge::FillElementWithString(DcmElement& element, | |
1479 const DicomTag& tag, | |
1695 | 1480 const std::string& utf8Value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1481 bool decodeDataUriScheme, |
1695 | 1482 Encoding dicomEncoding) |
1689 | 1483 { |
1484 std::string binary; | |
1695 | 1485 const std::string* decoded = &utf8Value; |
1689 | 1486 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1487 if (decodeDataUriScheme && |
1695 | 1488 boost::starts_with(utf8Value, "data:application/octet-stream;base64,")) |
1689 | 1489 { |
1490 std::string mime; | |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1491 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1492 { |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1493 throw OrthancException(ErrorCode_BadFileFormat); |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1494 } |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1495 |
1695 | 1496 decoded = &binary; |
1497 } | |
1498 else if (dicomEncoding != Encoding_Utf8) | |
1499 { | |
1500 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding); | |
1689 | 1501 decoded = &binary; |
1502 } | |
1503 | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1504 DcmTag key(tag.GetGroup(), tag.GetElement()); |
1689 | 1505 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1506 if (tag.IsPrivate() || |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1507 IsBinaryTag(key)) |
1689 | 1508 { |
1509 if (element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good()) | |
1510 { | |
1511 return; | |
1512 } | |
1513 else | |
1514 { | |
1515 throw OrthancException(ErrorCode_InternalError); | |
1516 } | |
1517 } | |
1518 | |
1519 bool ok = false; | |
1520 | |
1521 try | |
1522 { | |
1523 switch (key.getEVR()) | |
1524 { | |
1525 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1526 | |
1527 /** | |
1528 * TODO. | |
1529 **/ | |
1530 | |
1531 case EVR_OB: // other byte | |
1532 case EVR_OF: // other float | |
1533 case EVR_OW: // other word | |
1534 case EVR_AT: // attribute tag | |
1535 throw OrthancException(ErrorCode_NotImplemented); | |
1536 | |
1537 case EVR_UN: // unknown value representation | |
1538 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1539 | |
1540 | |
1541 /** | |
1542 * String types. | |
1543 **/ | |
1544 | |
1545 case EVR_DS: // decimal string | |
1546 case EVR_IS: // integer string | |
1547 case EVR_AS: // age string | |
1548 case EVR_DA: // date string | |
1549 case EVR_DT: // date time string | |
1550 case EVR_TM: // time string | |
1551 case EVR_AE: // application entity title | |
1552 case EVR_CS: // code string | |
1553 case EVR_SH: // short string | |
1554 case EVR_LO: // long string | |
1555 case EVR_ST: // short text | |
1556 case EVR_LT: // long text | |
1557 case EVR_UT: // unlimited text | |
1558 case EVR_PN: // person name | |
1559 case EVR_UI: // unique identifier | |
1560 { | |
1561 ok = element.putString(decoded->c_str()).good(); | |
1562 break; | |
1563 } | |
1564 | |
1565 | |
1566 /** | |
1567 * Numerical types | |
1568 **/ | |
1569 | |
1570 case EVR_SL: // signed long | |
1571 { | |
1572 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good(); | |
1573 break; | |
1574 } | |
1575 | |
1576 case EVR_SS: // signed short | |
1577 { | |
1578 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good(); | |
1579 break; | |
1580 } | |
1581 | |
1582 case EVR_UL: // unsigned long | |
1583 { | |
1584 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good(); | |
1585 break; | |
1586 } | |
1587 | |
1588 case EVR_US: // unsigned short | |
1589 { | |
1590 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good(); | |
1591 break; | |
1592 } | |
1593 | |
1594 case EVR_FL: // float single-precision | |
1595 { | |
1596 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good(); | |
1597 break; | |
1598 } | |
1599 | |
1600 case EVR_FD: // float double-precision | |
1601 { | |
1602 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good(); | |
1603 break; | |
1604 } | |
1605 | |
1606 | |
1607 /** | |
1608 * Sequence types, should never occur at this point. | |
1609 **/ | |
1610 | |
1611 case EVR_SQ: // sequence of items | |
1612 { | |
1613 ok = false; | |
1614 break; | |
1615 } | |
1616 | |
1617 | |
1618 /** | |
1619 * Internal to DCMTK. | |
1620 **/ | |
1621 | |
1622 case EVR_ox: // OB or OW depending on context | |
1623 case EVR_xs: // SS or US depending on context | |
1624 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1625 case EVR_na: // na="not applicable", for data which has no VR | |
1626 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1627 case EVR_item: // used internally for items | |
1628 case EVR_metainfo: // used internally for meta info datasets | |
1629 case EVR_dataset: // used internally for datasets | |
1630 case EVR_fileFormat: // used internally for DICOM files | |
1631 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1632 case EVR_dirRecord: // used internally for DICOMDIR records | |
1633 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1634 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1635 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1636 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1637 case EVR_OverlayData: // used internally for overlay data | |
1638 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1639 default: | |
1640 break; | |
1641 } | |
1642 } | |
1643 catch (boost::bad_lexical_cast&) | |
1644 { | |
1645 ok = false; | |
1646 } | |
1647 | |
1648 if (!ok) | |
1649 { | |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1650 LOG(ERROR) << "While creating a DICOM instance, tag (" << tag.Format() |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1651 << ") has out-of-range value: \"" << *decoded << "\""; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1652 throw OrthancException(ErrorCode_BadFileFormat); |
1689 | 1653 } |
1654 } | |
1655 | |
1656 | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1657 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag, |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1658 const Json::Value& value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1659 bool decodeDataUriScheme, |
1695 | 1660 Encoding dicomEncoding) |
1689 | 1661 { |
1662 std::auto_ptr<DcmElement> element; | |
1663 | |
1690 | 1664 switch (value.type()) |
1689 | 1665 { |
1690 | 1666 case Json::stringValue: |
1667 element.reset(CreateElementForTag(tag)); | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1668 FillElementWithString(*element, tag, value.asString(), decodeDataUriScheme, dicomEncoding); |
1690 | 1669 break; |
1670 | |
2216
9a8fab016145
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1671 case Json::nullValue: |
9a8fab016145
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1672 element.reset(CreateElementForTag(tag)); |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1673 FillElementWithString(*element, tag, "", decodeDataUriScheme, dicomEncoding); |
9a8fab016145
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1674 break; |
9a8fab016145
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1675 |
1690 | 1676 case Json::arrayValue: |
1677 { | |
1678 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1679 if (key.getEVR() != EVR_SQ) | |
1680 { | |
1681 throw OrthancException(ErrorCode_BadParameterType); | |
1682 } | |
1683 | |
1684 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key, value.size()); | |
1685 element.reset(sequence); | |
1686 | |
1687 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) | |
1688 { | |
1689 std::auto_ptr<DcmItem> item(new DcmItem); | |
1690 | |
1691 Json::Value::Members members = value[i].getMemberNames(); | |
1692 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++) | |
1693 { | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1694 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding)); |
1690 | 1695 } |
1696 | |
1697 sequence->append(item.release()); | |
1698 } | |
1699 | |
1700 break; | |
1701 } | |
1702 | |
1703 default: | |
1704 throw OrthancException(ErrorCode_BadParameterType); | |
1689 | 1705 } |
1706 | |
1707 return element.release(); | |
1708 } | |
1765
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1709 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1710 |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1711 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
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|
1712 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1713 DcmElement *element = NULL; |
1927
b60f27664b8f
simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
1714 if (!dataset.findAndGetElement(DCM_PixelData, element).good()) |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1715 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1716 throw OrthancException(ErrorCode_BadFileFormat); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1717 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1718 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1719 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1720 DcmPixelSequence* pixelSequence = NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1721 if (!pixelData.getEncapsulatedRepresentation |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1722 (dataset.getOriginalXfer(), NULL, pixelSequence).good()) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1723 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1724 return NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1725 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1726 else |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1727 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1728 return pixelSequence; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1729 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1730 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1731 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1732 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1733 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1734 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1735 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1736 if (json.type() != Json::objectValue) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1737 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1738 throw OrthancException(ErrorCode_BadParameterType); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1739 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1740 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1741 Encoding encoding = defaultEncoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1742 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1743 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1744 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1745 // Look for SpecificCharacterSet (0008,0005) in the JSON file |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1746 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1747 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1748 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1749 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1750 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1751 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1752 if (value.type() != Json::stringValue || |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1753 (value.asString().length() != 0 && |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1754 !GetDicomEncoding(encoding, value.asCString()))) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1755 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1756 LOG(ERROR) << "Unknown encoding while creating DICOM from JSON: " << value; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1757 throw OrthancException(ErrorCode_BadRequest); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1758 } |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1759 |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1760 if (value.asString().length() == 0) |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1761 { |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1762 return defaultEncoding; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1763 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1764 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1765 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1766 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1767 return encoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1768 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1769 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1770 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1771 static void SetString(DcmDataset& target, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1772 const DcmTag& tag, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1773 const std::string& value) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1774 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1775 if (!target.putAndInsertString(tag, value.c_str()).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1776 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1777 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1778 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1779 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1780 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1781 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1782 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1783 bool generateIdentifiers, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1784 bool decodeDataUriScheme, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1785 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1786 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1787 std::auto_ptr<DcmDataset> result(new DcmDataset); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1788 Encoding encoding = ExtractEncoding(json, defaultEncoding); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1789 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1790 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1791 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1792 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1793 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1794 bool hasPatientId = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1795 bool hasStudyInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1796 bool hasSeriesInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1797 bool hasSopInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1798 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1799 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1800 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1801 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1802 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1803 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1804 if (tag == DICOM_TAG_PATIENT_ID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1805 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1806 hasPatientId = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1807 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1808 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1809 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1810 hasStudyInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1811 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1812 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1813 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1814 hasSeriesInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1815 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1816 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1817 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1818 hasSopInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1819 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1820 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1821 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1822 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1823 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1824 const DcmTagKey& tag = element->getTag(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1825 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1826 result->findAndDeleteElement(tag); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1827 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1828 DcmElement* tmp = element.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1829 if (!result->insert(tmp, false, false).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1830 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1831 delete tmp; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1832 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1833 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1834 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1835 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1836 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1837 if (!hasPatientId && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1838 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1839 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1840 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1841 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1842 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1843 if (!hasStudyInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1844 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1845 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1846 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1847 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1848 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1849 if (!hasSeriesInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1850 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1851 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1852 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1853 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1854 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1855 if (!hasSopInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1856 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1857 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1858 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1859 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1860 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1861 return result.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1862 } |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1863 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1864 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1865 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer, |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1866 size_t size) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1867 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1868 DcmInputBufferStream is; |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1869 if (size > 0) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1870 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1871 is.setBuffer(buffer, size); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1872 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1873 is.setEos(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1874 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1875 std::auto_ptr<DcmFileFormat> result(new DcmFileFormat); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1876 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1877 result->transferInit(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1878 if (!result->read(is).good()) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1879 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1880 throw OrthancException(ErrorCode_BadFileFormat); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1881 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1882 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1883 result->loadAllDataIntoMemory(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1884 result->transferEnd(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1885 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1886 return result.release(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1887 } |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1888 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1889 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1890 void FromDcmtkBridge::FromJson(DicomMap& target, |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1891 const Json::Value& source) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1892 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1893 if (source.type() != Json::objectValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1894 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1895 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1896 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1897 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1898 target.Clear(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1899 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1900 Json::Value::Members members = source.getMemberNames(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1901 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1902 for (size_t i = 0; i < members.size(); i++) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1903 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1904 const Json::Value& value = source[members[i]]; |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1905 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1906 if (value.type() != Json::stringValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1907 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1908 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1909 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1910 |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1911 target.SetValue(ParseTag(members[i]), value.asString(), false); |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1912 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1913 } |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1914 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1915 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1916 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1917 Encoding source, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1918 Encoding target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1919 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1920 // Recursive exploration of a dataset to change the encoding of |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1921 // each string-like element |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1922 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1923 if (source == target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1924 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1925 return; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1926 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1927 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1928 for (unsigned long i = 0; i < dataset.card(); i++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1929 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1930 DcmElement* element = dataset.getElement(i); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1931 if (element) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1932 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1933 if (element->isLeaf()) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1934 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1935 char *c = NULL; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1936 if (element->isaString() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1937 element->getString(c).good() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1938 c != NULL) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1939 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1940 std::string a = Toolbox::ConvertToUtf8(c, source); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1941 std::string b = Toolbox::ConvertFromUtf8(a, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1942 element->putString(b.c_str()); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1943 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1944 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1945 else |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1946 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1947 // "All subclasses of DcmElement except for DcmSequenceOfItems |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1948 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1949 // etc. are not." The following dynamic_cast is thus OK. |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1950 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1951 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1952 for (unsigned long j = 0; j < sequence.card(); j++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1953 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1954 ChangeStringEncoding(*sequence.getItem(j), source, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1955 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1956 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1957 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1958 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1959 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1960 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1961 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
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1962 bool FromDcmtkBridge::LookupTransferSyntax(std::string& result, |
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1963 DcmFileFormat& dicom) |
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1964 { |
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1965 const char* value = NULL; |
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1966 |
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1967 if (dicom.getMetaInfo() != NULL && |
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1968 dicom.getMetaInfo()->findAndGetString(DCM_TransferSyntaxUID, value).good() && |
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1969 value != NULL) |
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1970 { |
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1971 result.assign(value); |
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1972 return true; |
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1973 } |
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1974 else |
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1975 { |
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1976 return false; |
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1977 } |
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1978 } |
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1979 |
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1980 |
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1981 #if ORTHANC_ENABLE_LUA == 1 |
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1982 void FromDcmtkBridge::ExecuteToDicom(DicomMap& target, |
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1983 LuaFunctionCall& call) |
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1984 { |
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1985 Json::Value output; |
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1986 call.ExecuteToJson(output, true /* keep strings */); |
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1987 |
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1988 target.Clear(); |
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1989 |
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1990 if (output.type() == Json::arrayValue && |
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1991 output.size() == 0) |
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1992 { |
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1993 // This case happens for empty tables |
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1994 return; |
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1995 } |
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1996 |
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1997 if (output.type() != Json::objectValue) |
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1998 { |
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1999 LOG(ERROR) << "Lua: IncomingFindRequestFilter must return a table"; |
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2000 throw OrthancException(ErrorCode_LuaBadOutput); |
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2001 } |
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2002 |
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2003 Json::Value::Members members = output.getMemberNames(); |
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2004 |
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2005 for (size_t i = 0; i < members.size(); i++) |
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2006 { |
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2007 if (output[members[i]].type() != Json::stringValue) |
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2008 { |
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2009 LOG(ERROR) << "Lua: IncomingFindRequestFilter must return a table mapping names of DICOM tags to strings"; |
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2010 throw OrthancException(ErrorCode_LuaBadOutput); |
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2011 } |
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2012 |
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2013 DicomTag tag(ParseTag(members[i])); |
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2014 target.SetValue(tag, output[members[i]].asString(), false); |
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2015 } |
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2016 } |
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2017 #endif |
0 | 2018 } |