annotate OrthancServer/OrthancFindRequestHandler.cpp @ 2890:f5ce33d3295c

increased DownloadPackage Timeout since we've seen that 60sec is not always enough
author am@osimis.io
date Mon, 15 Oct 2018 15:33:40 +0200
parents ae8e72009e64
children ce310baccda6
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "OrthancFindRequestHandler.h"
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36
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37 #include "../Core/DicomFormat/DicomArray.h"
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38 #include "../Core/Lua/LuaFunctionCall.h"
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39 #include "../Core/Logging.h"
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40 #include "../Core/DicomParsing/FromDcmtkBridge.h"
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41 #include "OrthancInitialization.h"
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42 #include "Search/LookupResource.h"
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43 #include "ServerToolbox.h"
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44
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45 #include <boost/regex.hpp>
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47
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48 namespace Orthanc
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49 {
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50 static void GetChildren(std::list<std::string>& target,
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51 ServerIndex& index,
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52 const std::list<std::string>& source)
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53 {
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54 target.clear();
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55
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56 for (std::list<std::string>::const_iterator
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57 it = source.begin(); it != source.end(); ++it)
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58 {
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59 std::list<std::string> tmp;
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60 index.GetChildren(tmp, *it);
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61 target.splice(target.end(), tmp);
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62 }
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63 }
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64
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65
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66 static void StoreSetOfStrings(DicomMap& result,
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67 const DicomTag& tag,
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68 const std::set<std::string>& values)
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69 {
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70 bool isFirst = true;
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71
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72 std::string s;
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73 for (std::set<std::string>::const_iterator
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74 it = values.begin(); it != values.end(); ++it)
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75 {
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76 if (isFirst)
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77 {
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78 isFirst = false;
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79 }
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80 else
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81 {
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82 s += "\\";
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83 }
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84
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85 s += *it;
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86 }
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87
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88 result.SetValue(tag, s, false);
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89 }
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90
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91
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92 static void ExtractTagFromMainDicomTags(std::set<std::string>& target,
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93 ServerIndex& index,
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94 const DicomTag& tag,
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95 const std::list<std::string>& resources,
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96 ResourceType level)
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97 {
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98 for (std::list<std::string>::const_iterator
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99 it = resources.begin(); it != resources.end(); ++it)
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100 {
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101 DicomMap tags;
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102 if (index.GetMainDicomTags(tags, *it, level, level) &&
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103 tags.HasTag(tag))
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104 {
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105 target.insert(tags.GetValue(tag).GetContent());
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106 }
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107 }
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108 }
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109
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110
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111 static bool ExtractMetadata(std::set<std::string>& target,
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112 ServerIndex& index,
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113 MetadataType metadata,
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114 const std::list<std::string>& resources)
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115 {
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116 for (std::list<std::string>::const_iterator
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117 it = resources.begin(); it != resources.end(); ++it)
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118 {
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119 std::string value;
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120 if (index.LookupMetadata(value, *it, metadata))
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121 {
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122 target.insert(value);
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123 }
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124 else
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125 {
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126 // This metadata is unavailable for some resource, give up
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127 return false;
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128 }
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129 }
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130
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131 return true;
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132 }
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133
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134
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135 static void ExtractTagFromInstancesOnDisk(std::set<std::string>& target,
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136 ServerContext& context,
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137 const DicomTag& tag,
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138 const std::list<std::string>& instances)
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139 {
2039
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140 // WARNING: This function is slow, as it reads the JSON file
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141 // summarizing each instance of interest from the hard drive.
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142
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143 std::string formatted = tag.Format();
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144
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145 for (std::list<std::string>::const_iterator
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146 it = instances.begin(); it != instances.end(); ++it)
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147 {
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148 Json::Value dicom;
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149 context.ReadDicomAsJson(dicom, *it);
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150
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151 if (dicom.isMember(formatted))
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152 {
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153 const Json::Value& source = dicom[formatted];
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154
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155 if (source.type() == Json::objectValue &&
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156 source.isMember("Type") &&
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157 source.isMember("Value") &&
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158 source["Type"].asString() == "String" &&
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159 source["Value"].type() == Json::stringValue)
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160 {
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161 target.insert(source["Value"].asString());
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162 }
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163 }
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164 }
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165 }
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166
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167
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168 static void ComputePatientCounters(DicomMap& result,
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169 ServerIndex& index,
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170 const std::string& patient,
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diff changeset
171 const DicomMap& query)
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172 {
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173 std::list<std::string> studies;
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174 index.GetChildren(studies, patient);
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175
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176 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES))
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177 {
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178 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES,
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179 boost::lexical_cast<std::string>(studies.size()), false);
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180 }
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181
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182 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) &&
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183 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES))
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184 {
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185 return;
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186 }
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187
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188 std::list<std::string> series;
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189 GetChildren(series, index, studies);
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190 studies.clear(); // This information is useless below
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191
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diff changeset
192 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES))
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diff changeset
193 {
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194 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES,
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diff changeset
195 boost::lexical_cast<std::string>(series.size()), false);
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196 }
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197
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diff changeset
198 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES))
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199 {
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200 return;
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201 }
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diff changeset
202
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diff changeset
203 std::list<std::string> instances;
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diff changeset
204 GetChildren(instances, index, series);
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205
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diff changeset
206 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES))
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diff changeset
207 {
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diff changeset
208 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES,
2007
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diff changeset
209 boost::lexical_cast<std::string>(instances.size()), false);
1898
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diff changeset
210 }
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diff changeset
211 }
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diff changeset
212
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diff changeset
213
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diff changeset
214 static void ComputeStudyCounters(DicomMap& result,
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diff changeset
215 ServerContext& context,
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diff changeset
216 const std::string& study,
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diff changeset
217 const DicomMap& query)
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diff changeset
218 {
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diff changeset
219 ServerIndex& index = context.GetIndex();
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diff changeset
220
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diff changeset
221 std::list<std::string> series;
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diff changeset
222 index.GetChildren(series, study);
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diff changeset
223
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diff changeset
224 if (query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES))
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diff changeset
225 {
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diff changeset
226 result.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES,
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
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diff changeset
227 boost::lexical_cast<std::string>(series.size()), false);
1898
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228 }
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diff changeset
229
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diff changeset
230 if (query.HasTag(DICOM_TAG_MODALITIES_IN_STUDY))
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diff changeset
231 {
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diff changeset
232 std::set<std::string> values;
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diff changeset
233 ExtractTagFromMainDicomTags(values, index, DICOM_TAG_MODALITY, series, ResourceType_Series);
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diff changeset
234 StoreSetOfStrings(result, DICOM_TAG_MODALITIES_IN_STUDY, values);
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235 }
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diff changeset
236
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diff changeset
237 if (!query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) &&
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diff changeset
238 !query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY))
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diff changeset
239 {
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diff changeset
240 return;
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241 }
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diff changeset
242
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diff changeset
243 std::list<std::string> instances;
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diff changeset
244 GetChildren(instances, index, series);
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diff changeset
245
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diff changeset
246 if (query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES))
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diff changeset
247 {
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diff changeset
248 result.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES,
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
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diff changeset
249 boost::lexical_cast<std::string>(instances.size()), false);
1898
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diff changeset
250 }
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diff changeset
251
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diff changeset
252 if (query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY))
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253 {
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diff changeset
254 std::set<std::string> values;
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255
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diff changeset
256 if (ExtractMetadata(values, index, MetadataType_Instance_SopClassUid, instances))
2039
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diff changeset
257 {
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diff changeset
258 // The metadata "SopClassUid" is available for each of these instances
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diff changeset
259 StoreSetOfStrings(result, DICOM_TAG_SOP_CLASSES_IN_STUDY, values);
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260 }
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diff changeset
261 else if (Configuration::GetGlobalBoolParameter("AllowFindSopClassesInStudy", false))
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diff changeset
262 {
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diff changeset
263 ExtractTagFromInstancesOnDisk(values, context, DICOM_TAG_SOP_CLASS_UID, instances);
2039
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parents: 2007
diff changeset
264 StoreSetOfStrings(result, DICOM_TAG_SOP_CLASSES_IN_STUDY, values);
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parents: 2007
diff changeset
265 }
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diff changeset
266 else
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diff changeset
267 {
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diff changeset
268 result.SetValue(DICOM_TAG_SOP_CLASSES_IN_STUDY, "", false);
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parents: 2007
diff changeset
269 LOG(WARNING) << "The handling of \"SOP Classes in Study\" (0008,0062) "
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diff changeset
270 << "in C-FIND requests is disabled";
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diff changeset
271 }
1898
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272 }
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273 }
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274
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275
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diff changeset
276 static void ComputeSeriesCounters(DicomMap& result,
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277 ServerIndex& index,
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diff changeset
278 const std::string& series,
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diff changeset
279 const DicomMap& query)
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280 {
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diff changeset
281 std::list<std::string> instances;
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diff changeset
282 index.GetChildren(instances, series);
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diff changeset
283
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diff changeset
284 if (query.HasTag(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES))
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parents: 1893
diff changeset
285 {
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diff changeset
286 result.SetValue(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES,
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
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parents: 2006
diff changeset
287 boost::lexical_cast<std::string>(instances.size()), false);
1898
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diff changeset
288 }
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diff changeset
289 }
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diff changeset
290
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diff changeset
291
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diff changeset
292 static DicomMap* ComputeCounters(ServerContext& context,
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diff changeset
293 const std::string& instanceId,
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diff changeset
294 ResourceType level,
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diff changeset
295 const DicomMap& query)
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diff changeset
296 {
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diff changeset
297 switch (level)
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diff changeset
298 {
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diff changeset
299 case ResourceType_Patient:
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parents: 1893
diff changeset
300 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) &&
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diff changeset
301 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) &&
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diff changeset
302 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES))
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parents: 1893
diff changeset
303 {
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diff changeset
304 return NULL;
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diff changeset
305 }
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parents: 1893
diff changeset
306
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diff changeset
307 break;
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diff changeset
308
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diff changeset
309 case ResourceType_Study:
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diff changeset
310 if (!query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) &&
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diff changeset
311 !query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) &&
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diff changeset
312 !query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY) &&
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
313 !query.HasTag(DICOM_TAG_MODALITIES_IN_STUDY))
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parents: 1893
diff changeset
314 {
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diff changeset
315 return NULL;
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diff changeset
316 }
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
317
e018037d4d0e Support of optional tags for counting resources in C-Find
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diff changeset
318 break;
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diff changeset
319
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diff changeset
320 case ResourceType_Series:
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
321 if (!query.HasTag(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES))
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
322 {
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diff changeset
323 return NULL;
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parents: 1893
diff changeset
324 }
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
325
e018037d4d0e Support of optional tags for counting resources in C-Find
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diff changeset
326 break;
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diff changeset
327
e018037d4d0e Support of optional tags for counting resources in C-Find
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diff changeset
328 default:
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
329 return NULL;
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parents: 1893
diff changeset
330 }
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
331
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
332 std::string parent;
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
333 if (!context.GetIndex().LookupParent(parent, instanceId, level))
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
334 {
e018037d4d0e Support of optional tags for counting resources in C-Find
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diff changeset
335 throw OrthancException(ErrorCode_UnknownResource); // The resource was deleted in between
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
336 }
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
337
e018037d4d0e Support of optional tags for counting resources in C-Find
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diff changeset
338 std::auto_ptr<DicomMap> result(new DicomMap);
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diff changeset
339
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
340 switch (level)
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
341 {
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
342 case ResourceType_Patient:
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
343 ComputePatientCounters(*result, context.GetIndex(), parent, query);
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
344 break;
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diff changeset
345
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
346 case ResourceType_Study:
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
347 ComputeStudyCounters(*result, context, parent, query);
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parents: 1893
diff changeset
348 break;
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diff changeset
349
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
350 case ResourceType_Series:
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1893
diff changeset
351 ComputeSeriesCounters(*result, context.GetIndex(), parent, query);
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
352 break;
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parents: 1893
diff changeset
353
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
354 default:
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
355 throw OrthancException(ErrorCode_InternalError);
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parents: 1893
diff changeset
356 }
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diff changeset
357
e018037d4d0e Support of optional tags for counting resources in C-Find
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diff changeset
358 return result.release();
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diff changeset
359 }
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parents: 1893
diff changeset
360
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
361
608
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
362 static void AddAnswer(DicomFindAnswers& answers,
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
363 const Json::Value& resource,
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
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parents: 1856
diff changeset
364 const DicomArray& query,
1898
e018037d4d0e Support of optional tags for counting resources in C-Find
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parents: 1893
diff changeset
365 const std::list<DicomTag>& sequencesToReturn,
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1893
diff changeset
366 const DicomMap* counters)
608
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
367 {
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
368 DicomMap result;
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
369
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
370 for (size_t i = 0; i < query.GetSize(); i++)
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
371 {
1346
911a1ad5ebe8 re-fix issue 30
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1332
diff changeset
372 if (query.GetElement(i).GetTag() == DICOM_TAG_QUERY_RETRIEVE_LEVEL)
911a1ad5ebe8 re-fix issue 30
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1332
diff changeset
373 {
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
374 // Fix issue 30 on Google Code (QR response missing "Query/Retrieve Level" (008,0052))
1346
911a1ad5ebe8 re-fix issue 30
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1332
diff changeset
375 result.SetValue(query.GetElement(i).GetTag(), query.GetElement(i).GetValue());
911a1ad5ebe8 re-fix issue 30
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1332
diff changeset
376 }
911a1ad5ebe8 re-fix issue 30
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1332
diff changeset
377 else if (query.GetElement(i).GetTag() == DICOM_TAG_SPECIFIC_CHARACTER_SET)
911a1ad5ebe8 re-fix issue 30
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1332
diff changeset
378 {
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
379 // Do not include the encoding, this is handled by class ParsedDicomFile
1346
911a1ad5ebe8 re-fix issue 30
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1332
diff changeset
380 }
911a1ad5ebe8 re-fix issue 30
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1332
diff changeset
381 else
608
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
382 {
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
383 std::string tag = query.GetElement(i).GetTag().Format();
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
384 std::string value;
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
385 if (resource.isMember(tag))
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
386 {
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
387 value = resource.get(tag, Json::arrayValue).get("Value", "").asString();
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
388 result.SetValue(query.GetElement(i).GetTag(), value, false);
608
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
389 }
722
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 716
diff changeset
390 else
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 716
diff changeset
391 {
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
392 result.SetValue(query.GetElement(i).GetTag(), "", false);
722
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 716
diff changeset
393 }
608
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
394 }
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
395 }
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
396
1898
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1893
diff changeset
397 if (counters != NULL)
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1893
diff changeset
398 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1893
diff changeset
399 DicomArray tmp(*counters);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1893
diff changeset
400 for (size_t i = 0; i < tmp.GetSize(); i++)
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1893
diff changeset
401 {
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
402 result.SetValue(tmp.GetElement(i).GetTag(), tmp.GetElement(i).GetValue().GetContent(), false);
1898
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1893
diff changeset
403 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1893
diff changeset
404 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1893
diff changeset
405
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
406 if (result.GetSize() == 0 &&
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
407 sequencesToReturn.empty())
1331
77e129ba64e4 Prevent freeze on C-FIND if no DICOM tag is to be returned
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
408 {
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
409 LOG(WARNING) << "The C-FIND request does not return any DICOM tag";
1331
77e129ba64e4 Prevent freeze on C-FIND if no DICOM tag is to be returned
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
410 }
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
411 else if (sequencesToReturn.empty())
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
412 {
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
413 answers.Add(result);
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
414 }
1331
77e129ba64e4 Prevent freeze on C-FIND if no DICOM tag is to be returned
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
415 else
77e129ba64e4 Prevent freeze on C-FIND if no DICOM tag is to be returned
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
416 {
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
417 ParsedDicomFile dicom(result);
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
418
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
419 for (std::list<DicomTag>::const_iterator tag = sequencesToReturn.begin();
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
420 tag != sequencesToReturn.end(); ++tag)
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
421 {
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
422 const Json::Value& source = resource[tag->Format()];
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
423
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
424 if (source.type() == Json::objectValue &&
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
425 source.isMember("Type") &&
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
426 source.isMember("Value") &&
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
427 source["Type"].asString() == "Sequence" &&
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
428 source["Value"].type() == Json::arrayValue)
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
429 {
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
430 Json::Value content = Json::arrayValue;
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
431
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
432 for (Json::Value::ArrayIndex i = 0; i < source["Value"].size(); i++)
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
433 {
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
434 Json::Value item;
2120
4b02ec79728a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
435 ServerToolbox::SimplifyTags(item, source["Value"][i], DicomToJsonFormat_Short);
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
436 content.append(item);
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
437 }
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
438
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
439 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent);
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
440 }
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
441 }
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
442
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
443 answers.Add(dicom);
1331
77e129ba64e4 Prevent freeze on C-FIND if no DICOM tag is to be returned
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
444 }
608
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
445 }
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
446
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
447
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
448
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
449 bool OrthancFindRequestHandler::FilterQueryTag(std::string& value /* can be modified */,
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
450 ResourceType level,
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
451 const DicomTag& tag,
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
452 ModalityManufacturer manufacturer)
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
453 {
2335
174c3616ab6d code review
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2317
diff changeset
454 // Whatever the manufacturer, remove the GenericGroupLength tags
174c3616ab6d code review
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2317
diff changeset
455 // http://dicom.nema.org/medical/dicom/current/output/chtml/part05/sect_7.2.html
174c3616ab6d code review
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2317
diff changeset
456 // https://bitbucket.org/sjodogne/orthanc/issues/31/
2434
63194107e61b fix issue 31 for good: removing group length correctly
amazy
parents: 2382
diff changeset
457 if (tag.GetElement() == 0x0000)
2317
5b7556568fa4 Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents: 2256
diff changeset
458 {
5b7556568fa4 Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents: 2256
diff changeset
459 return false;
5b7556568fa4 Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents: 2256
diff changeset
460 }
5b7556568fa4 Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents: 2256
diff changeset
461
1853
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
462 switch (manufacturer)
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
463 {
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
464 case ModalityManufacturer_Vitrea:
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
465 // Following Denis Nesterov's mail on 2015-11-30
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
466 if (tag == DicomTag(0x5653, 0x0010)) // "PrivateCreator = Vital Images SW 3.4"
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
467 {
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
468 return false;
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
469 }
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
470
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
471 break;
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
472
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
473 default:
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
474 break;
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
475 }
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1851
diff changeset
476
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
477 return true;
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
478 }
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
479
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
480
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
481 bool OrthancFindRequestHandler::ApplyLuaFilter(DicomMap& target,
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
482 const DicomMap& source,
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
483 const std::string& remoteIp,
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
484 const std::string& remoteAet,
2827
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
485 const std::string& calledAet,
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
486 ModalityManufacturer manufacturer)
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
487 {
2221
e7beca979562 fix Windows build due to overwriting a macro
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2218
diff changeset
488 static const char* LUA_CALLBACK = "IncomingFindRequestFilter";
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
489
2617
912a767911b0 back to a single Lua context
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
490 LuaScripting::Lock lock(context_.GetLuaScripting());
912a767911b0 back to a single Lua context
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
491
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
492 if (!lock.GetLua().IsExistingFunction(LUA_CALLBACK))
2218
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
493 {
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
494 return false;
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
495 }
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
496 else
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
497 {
2827
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
498 Json::Value origin;
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
499 FormatOrigin(origin, remoteIp, remoteAet, calledAet, manufacturer);
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
500
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
501 LuaFunctionCall call(lock.GetLua(), LUA_CALLBACK);
2218
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
502 call.PushDicom(source);
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
503 call.PushJson(origin);
2218
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
504 FromDcmtkBridge::ExecuteToDicom(target, call);
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
505
2218
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
506 return true;
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
507 }
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
508 }
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
509
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
510
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
511 OrthancFindRequestHandler::OrthancFindRequestHandler(ServerContext& context) :
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
512 context_(context),
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
513 maxResults_(0),
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
514 maxInstances_(0)
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
515 {
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
516 }
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
517
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2612
diff changeset
518
1800
30e97a1f4093 callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1799
diff changeset
519 void OrthancFindRequestHandler::Handle(DicomFindAnswers& answers,
665
41b3e5ccb291 fix for medInria
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
520 const DicomMap& input,
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
521 const std::list<DicomTag>& sequencesToReturn,
1573
3309878b3e16 more information about the origin of requests submitted to the DICOM handlers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
522 const std::string& remoteIp,
1799
4f01c9d73f02 calledAet made available to all the handlers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1759
diff changeset
523 const std::string& remoteAet,
2256
de1ba22fd28a simplification wrt. modality manufacturers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
524 const std::string& calledAet,
de1ba22fd28a simplification wrt. modality manufacturers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
525 ModalityManufacturer manufacturer)
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
526 {
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
527 /**
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
528 * Possibly apply the user-supplied Lua filter.
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
529 **/
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
530
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
531 DicomMap lua;
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
532 const DicomMap* filteredInput = &input;
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
533
2827
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
534 if (ApplyLuaFilter(lua, input, remoteIp, remoteAet, calledAet, manufacturer))
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
535 {
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
536 filteredInput = &lua;
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
537 }
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
538
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
539
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
540 /**
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
541 * Retrieve the query level.
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
542 **/
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
543
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
544 assert(filteredInput != NULL);
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
545 const DicomValue* levelTmp = filteredInput->TestAndGetValue(DICOM_TAG_QUERY_RETRIEVE_LEVEL);
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
546 if (levelTmp == NULL ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
547 levelTmp->IsNull() ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
548 levelTmp->IsBinary())
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
549 {
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
550 LOG(ERROR) << "C-FIND request without the tag 0008,0052 (QueryRetrieveLevel)";
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551 throw OrthancException(ErrorCode_BadRequest);
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
552 }
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
553
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
554 ResourceType level = StringToResourceType(levelTmp->GetContent().c_str());
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
556 if (level != ResourceType_Patient &&
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
557 level != ResourceType_Study &&
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
558 level != ResourceType_Series &&
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
559 level != ResourceType_Instance)
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
560 {
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
561 throw OrthancException(ErrorCode_NotImplemented);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
562 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
563
665
41b3e5ccb291 fix for medInria
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
564
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
565 DicomArray query(*filteredInput);
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
566 LOG(INFO) << "DICOM C-Find request at level: " << EnumerationToString(level);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
567
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
568 for (size_t i = 0; i < query.GetSize(); i++)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
569 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
570 if (!query.GetElement(i).GetValue().IsNull())
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
571 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
572 LOG(INFO) << " " << query.GetElement(i).GetTag()
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
573 << " " << FromDcmtkBridge::GetTagName(query.GetElement(i))
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
574 << " = " << query.GetElement(i).GetValue().GetContent();
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
575 }
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
576 }
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
577
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
578 for (std::list<DicomTag>::const_iterator it = sequencesToReturn.begin();
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
579 it != sequencesToReturn.end(); ++it)
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
580 {
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
581 LOG(INFO) << " (" << it->Format()
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
582 << ") " << FromDcmtkBridge::GetTagName(*it, "")
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
583 << " : sequence tag whose content will be copied";
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
584 }
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
585
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
586
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
587 /**
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
588 * Build up the query object.
608
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
589 **/
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
590
2876
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2827
diff changeset
591 LookupResource lookup(level);
1759
e268412adcf1 removal of old implementation of search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
592
2256
de1ba22fd28a simplification wrt. modality manufacturers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
593 const bool caseSensitivePN = Configuration::GetGlobalBoolParameter("CaseSensitivePN", false);
de1ba22fd28a simplification wrt. modality manufacturers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
594
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
595 for (size_t i = 0; i < query.GetSize(); i++)
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
596 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
597 const DicomElement& element = query.GetElement(i);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
598 const DicomTag tag = element.GetTag();
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
599
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
600 if (element.GetValue().IsNull() ||
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
601 tag == DICOM_TAG_QUERY_RETRIEVE_LEVEL ||
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
602 tag == DICOM_TAG_SPECIFIC_CHARACTER_SET)
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
603 {
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
604 continue;
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
605 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
606
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
607 std::string value = element.GetValue().GetContent();
1429
7366a0bdda6a attempt of fix for Syngo.Via
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1383
diff changeset
608 if (value.size() == 0)
7366a0bdda6a attempt of fix for Syngo.Via
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1383
diff changeset
609 {
7366a0bdda6a attempt of fix for Syngo.Via
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1383
diff changeset
610 // An empty string corresponds to a "*" wildcard constraint, so we ignore it
7366a0bdda6a attempt of fix for Syngo.Via
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1383
diff changeset
611 continue;
7366a0bdda6a attempt of fix for Syngo.Via
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1383
diff changeset
612 }
611
9924aec1d694 filtering on modalities
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 610
diff changeset
613
2256
de1ba22fd28a simplification wrt. modality manufacturers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
614 if (FilterQueryTag(value, level, tag, manufacturer))
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
615 {
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
616 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(tag);
1758
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
617
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
618 // DICOM specifies that searches must be case sensitive, except
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
619 // for tags with a PN value representation
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
620 bool sensitive = true;
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
621 if (vr == ValueRepresentation_PersonName)
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
622 {
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
623 sensitive = caseSensitivePN;
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
624 }
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
625
2876
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2827
diff changeset
626 lookup.AddDicomConstraint(tag, value, sensitive);
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
627 }
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
628 else
1758
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
629 {
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
630 LOG(INFO) << "Because of a patch for the manufacturer of the remote modality, "
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
631 << "ignoring constraint on tag (" << tag.Format() << ") " << FromDcmtkBridge::GetTagName(element);
1759
e268412adcf1 removal of old implementation of search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
632 }
611
9924aec1d694 filtering on modalities
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633 }
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634
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635
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636 /**
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637 * Run the query.
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638 **/
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639
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640 size_t limit = (level == ResourceType_Instance) ? maxInstances_ : maxResults_;
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641
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642 // TODO - Use ServerContext::Apply() at this point, in order to
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643 // share the code with the "/tools/find" REST URI
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644 std::vector<std::string> resources, instances;
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645 context_.GetIndex().FindCandidates(resources, instances, lookup);
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646
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647 LOG(INFO) << "Number of candidate resources after fast DB filtering: " << resources.size();
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648
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649 assert(resources.size() == instances.size());
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650 bool complete = true;
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651
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652 for (size_t i = 0; i < instances.size(); i++)
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653 {
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654 // TODO - Don't read the full JSON from the disk if only "main
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655 // DICOM tags" are to be returned
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656 Json::Value dicom;
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657 context_.ReadDicomAsJson(dicom, instances[i]);
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658
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659 if (lookup.IsMatch(dicom))
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660 {
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661 if (limit != 0 &&
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662 answers.GetSize() >= limit)
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663 {
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664 complete = false;
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665 break;
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666 }
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667 else
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668 {
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669 std::auto_ptr<DicomMap> counters(ComputeCounters(context_, instances[i], level, *filteredInput));
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670 AddAnswer(answers, dicom, query, sequencesToReturn, counters.get());
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671 }
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672 }
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673 }
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674
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675 LOG(INFO) << "Number of matching resources: " << answers.GetSize();
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676
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677 answers.SetComplete(complete);
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678 }
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679
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680
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681 void OrthancFindRequestHandler::FormatOrigin(Json::Value& origin,
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682 const std::string& remoteIp,
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683 const std::string& remoteAet,
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684 const std::string& calledAet,
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685 ModalityManufacturer manufacturer)
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686 {
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687 origin = Json::objectValue;
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688 origin["RemoteIp"] = remoteIp;
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689 origin["RemoteAet"] = remoteAet;
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690 origin["CalledAet"] = calledAet;
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691 origin["Manufacturer"] = EnumerationToString(manufacturer);
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692 }
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693 }