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annotate OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.cpp @ 5319:f2e1ad71e49c

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added "OrthancPluginLoadDicomInstance()" to load DICOM instances from the database
author Sebastien Jodogne <s.jodogne@gmail.com>
date Sat, 24 Jun 2023 12:18:58 +0200
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children 3c8286e5d07b 58b91f5f4e79
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "../PrecompiledHeaders.h"
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25 #include "DcmtkTranscoder.h"
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26
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27
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28 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG)
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29 # error Macro ORTHANC_ENABLE_DCMTK_JPEG must be defined
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30 #endif
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31
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32 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS)
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33 # error Macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined
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34 #endif
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35
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36
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37 #include "FromDcmtkBridge.h"
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38 #include "../Logging.h"
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39 #include "../OrthancException.h"
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40
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41 #include <dcmtk/dcmdata/dcdeftag.h>
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42 #include <dcmtk/dcmjpeg/djrploss.h> // for DJ_RPLossy
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43 #include <dcmtk/dcmjpeg/djrplol.h> // for DJ_RPLossless
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44 #include <dcmtk/dcmjpls/djrparam.h> // for DJLSRepresentationParameter
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45
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46 #include <boost/lexical_cast.hpp>
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47
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48
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49 namespace Orthanc
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50 {
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51 DcmtkTranscoder::DcmtkTranscoder() :
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52 lossyQuality_(90)
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53 {
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54 }
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55
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56
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57 static bool GetBitsStored(uint16_t& bitsStored,
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58 DcmDataset& dataset)
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59 {
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60 return dataset.findAndGetUint16(DCM_BitsStored, bitsStored).good();
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61 }
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62
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63
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64 void DcmtkTranscoder::SetLossyQuality(unsigned int quality)
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65 {
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66 if (quality == 0 ||
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67 quality > 100)
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68 {
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69 throw OrthancException(
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70 ErrorCode_ParameterOutOfRange,
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71 "The quality for lossy transcoding must be an integer between 1 and 100, received: " +
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72 boost::lexical_cast<std::string>(quality));
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73 }
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74 else
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75 {
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76 LOG(INFO) << "Quality for lossy transcoding using DCMTK is set to: " << quality;
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77 lossyQuality_ = quality;
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78 }
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79 }
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80
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81 unsigned int DcmtkTranscoder::GetLossyQuality() const
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82 {
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83 return lossyQuality_;
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84 }
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85
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86
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87 bool DcmtkTranscoder::InplaceTranscode(DicomTransferSyntax& selectedSyntax /* out */,
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88 DcmFileFormat& dicom,
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89 const std::set<DicomTransferSyntax>& allowedSyntaxes,
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90 bool allowNewSopInstanceUid)
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91 {
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92 if (dicom.getDataset() == NULL)
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93 {
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94 throw OrthancException(ErrorCode_InternalError);
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95 }
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96
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97 DicomTransferSyntax syntax;
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98 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(syntax, dicom))
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99 {
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100 throw OrthancException(ErrorCode_BadFileFormat,
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101 "Cannot determine the transfer syntax");
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102 }
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103
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104 uint16_t bitsStored;
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105 bool hasBitsStored = GetBitsStored(bitsStored, *dicom.getDataset());
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106
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107 if (allowedSyntaxes.find(syntax) != allowedSyntaxes.end())
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108 {
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109 // No transcoding is needed
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110 return true;
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111 }
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112
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113 if (allowedSyntaxes.find(DicomTransferSyntax_LittleEndianImplicit) != allowedSyntaxes.end() &&
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114 FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_LittleEndianImplicit, NULL))
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115 {
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116 selectedSyntax = DicomTransferSyntax_LittleEndianImplicit;
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117 return true;
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118 }
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119
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120 if (allowedSyntaxes.find(DicomTransferSyntax_LittleEndianExplicit) != allowedSyntaxes.end() &&
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121 FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_LittleEndianExplicit, NULL))
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122 {
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123 selectedSyntax = DicomTransferSyntax_LittleEndianExplicit;
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124 return true;
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125 }
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126
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127 if (allowedSyntaxes.find(DicomTransferSyntax_BigEndianExplicit) != allowedSyntaxes.end() &&
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128 FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_BigEndianExplicit, NULL))
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129 {
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130 selectedSyntax = DicomTransferSyntax_BigEndianExplicit;
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131 return true;
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132 }
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133
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134 if (allowedSyntaxes.find(DicomTransferSyntax_DeflatedLittleEndianExplicit) != allowedSyntaxes.end() &&
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135 FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_DeflatedLittleEndianExplicit, NULL))
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136 {
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137 selectedSyntax = DicomTransferSyntax_DeflatedLittleEndianExplicit;
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138 return true;
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139 }
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140
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141 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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142 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess1) != allowedSyntaxes.end() &&
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143 allowNewSopInstanceUid &&
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144 (!hasBitsStored || bitsStored == 8))
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145 {
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146 // Check out "dcmjpeg/apps/dcmcjpeg.cc"
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147 DJ_RPLossy parameters(lossyQuality_);
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148
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149 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess1, &parameters))
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150 {
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151 selectedSyntax = DicomTransferSyntax_JPEGProcess1;
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152 return true;
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153 }
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154 }
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155 #endif
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156
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157 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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158 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess2_4) != allowedSyntaxes.end() &&
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159 allowNewSopInstanceUid &&
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160 (!hasBitsStored || bitsStored <= 12))
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161 {
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162 // Check out "dcmjpeg/apps/dcmcjpeg.cc"
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163 DJ_RPLossy parameters(lossyQuality_);
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164 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess2_4, &parameters))
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165 {
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166 selectedSyntax = DicomTransferSyntax_JPEGProcess2_4;
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167 return true;
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168 }
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169 }
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170 #endif
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171
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172 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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173 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess14) != allowedSyntaxes.end())
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174 {
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175 // Check out "dcmjpeg/apps/dcmcjpeg.cc"
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176 DJ_RPLossless parameters(6 /* opt_selection_value */,
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177 0 /* opt_point_transform */);
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178 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess14, &parameters))
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179 {
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180 selectedSyntax = DicomTransferSyntax_JPEGProcess14;
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181 return true;
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182 }
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183 }
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184 #endif
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185
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186 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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187 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess14SV1) != allowedSyntaxes.end())
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188 {
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189 // Check out "dcmjpeg/apps/dcmcjpeg.cc"
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190 DJ_RPLossless parameters(6 /* opt_selection_value */,
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191 0 /* opt_point_transform */);
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192 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess14SV1, &parameters))
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193 {
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194 selectedSyntax = DicomTransferSyntax_JPEGProcess14SV1;
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195 return true;
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196 }
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197 }
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198 #endif
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199
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200 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
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201 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGLSLossless) != allowedSyntaxes.end())
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202 {
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203 // Check out "dcmjpls/apps/dcmcjpls.cc"
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204 DJLSRepresentationParameter parameters(2 /* opt_nearlossless_deviation */,
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205 OFTrue /* opt_useLosslessProcess */);
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206
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207 /**
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208 * WARNING: This call results in a segmentation fault if using
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209 * the DCMTK package 3.6.2 from Ubuntu 18.04.
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210 **/
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211 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGLSLossless, &parameters))
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212 {
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213 selectedSyntax = DicomTransferSyntax_JPEGLSLossless;
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214 return true;
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215 }
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216 }
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217 #endif
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218
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219 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
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220 if (allowNewSopInstanceUid &&
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221 allowedSyntaxes.find(DicomTransferSyntax_JPEGLSLossy) != allowedSyntaxes.end())
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222 {
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223 // Check out "dcmjpls/apps/dcmcjpls.cc"
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224 DJLSRepresentationParameter parameters(2 /* opt_nearlossless_deviation */,
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225 OFFalse /* opt_useLosslessProcess */);
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226
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227 /**
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228 * WARNING: This call results in a segmentation fault if using
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229 * the DCMTK package 3.6.2 from Ubuntu 18.04.
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diff changeset
230 **/
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diff changeset
231 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGLSLossy, &parameters))
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232 {
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233 selectedSyntax = DicomTransferSyntax_JPEGLSLossy;
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234 return true;
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diff changeset
235 }
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236 }
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237 #endif
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238
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239 return false;
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240 }
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241
3904
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242 bool DcmtkTranscoder::IsSupported(DicomTransferSyntax syntax)
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243 {
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244 if (syntax == DicomTransferSyntax_LittleEndianImplicit ||
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245 syntax == DicomTransferSyntax_LittleEndianExplicit ||
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246 syntax == DicomTransferSyntax_BigEndianExplicit ||
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247 syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit)
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248 {
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249 return true;
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diff changeset
250 }
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251
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252 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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diff changeset
253 if (syntax == DicomTransferSyntax_JPEGProcess1 ||
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diff changeset
254 syntax == DicomTransferSyntax_JPEGProcess2_4 ||
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diff changeset
255 syntax == DicomTransferSyntax_JPEGProcess14 ||
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diff changeset
256 syntax == DicomTransferSyntax_JPEGProcess14SV1)
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diff changeset
257 {
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diff changeset
258 return true;
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diff changeset
259 }
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diff changeset
260 #endif
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261
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diff changeset
262 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
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parents: 3902
diff changeset
263 if (syntax == DicomTransferSyntax_JPEGLSLossless ||
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parents: 3902
diff changeset
264 syntax == DicomTransferSyntax_JPEGLSLossy)
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parents: 3902
diff changeset
265 {
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diff changeset
266 return true;
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parents: 3902
diff changeset
267 }
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diff changeset
268 #endif
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diff changeset
269
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diff changeset
270 return false;
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diff changeset
271 }
3906
f0dd5ded8927 refactoring using IDicomTranscoder::TranscodedDicom
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parents: 3904
diff changeset
272
f0dd5ded8927 refactoring using IDicomTranscoder::TranscodedDicom
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parents: 3904
diff changeset
273
3944
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parents: 3939
diff changeset
274 bool DcmtkTranscoder::Transcode(DicomImage& target,
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parents: 3939
diff changeset
275 DicomImage& source /* in, "GetParsed()" possibly modified */,
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276 const std::set<DicomTransferSyntax>& allowedSyntaxes,
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277 bool allowNewSopInstanceUid)
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278 {
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279 target.Clear();
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280
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281 DicomTransferSyntax sourceSyntax;
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282 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(sourceSyntax, source.GetParsed()))
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283 {
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284 LOG(ERROR) << "Unsupport transfer syntax for transcoding";
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285 return false;
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286 }
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287
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288 {
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289 std::string s;
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290 for (std::set<DicomTransferSyntax>::const_iterator
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291 it = allowedSyntaxes.begin(); it != allowedSyntaxes.end(); ++it)
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292 {
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293 if (!s.empty())
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294 {
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295 s += ", ";
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296 }
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297
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298 s += GetTransferSyntaxUid(*it);
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299 }
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300
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301 if (s.empty())
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302 {
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303 s = "<none>";
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304 }
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305
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306 LOG(INFO) << "DCMTK transcoding from " << GetTransferSyntaxUid(sourceSyntax)
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307 << " to one of: " << s;
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308 }
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309
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310 #if !defined(NDEBUG)
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311 const std::string sourceSopInstanceUid = GetSopInstanceUid(source.GetParsed());
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312 #endif
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313
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314 DicomTransferSyntax targetSyntax;
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315 if (allowedSyntaxes.find(sourceSyntax) != allowedSyntaxes.end())
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316 {
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317 // No transcoding is needed
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318 target.AcquireParsed(source);
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319 target.AcquireBuffer(source);
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320 return true;
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321 }
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322 else if (InplaceTranscode(targetSyntax, source.GetParsed(),
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323 allowedSyntaxes, allowNewSopInstanceUid))
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324 {
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325 // Sanity check
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326 DicomTransferSyntax targetSyntax2;
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327 if (FromDcmtkBridge::LookupOrthancTransferSyntax(targetSyntax2, source.GetParsed()) &&
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328 targetSyntax == targetSyntax2 &&
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329 allowedSyntaxes.find(targetSyntax2) != allowedSyntaxes.end())
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330 {
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331 target.AcquireParsed(source);
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332 source.Clear();
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333
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334 #if !defined(NDEBUG)
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335 // Only run the sanity check in debug mode
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336 CheckTranscoding(target, sourceSyntax, sourceSopInstanceUid,
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337 allowedSyntaxes, allowNewSopInstanceUid);
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338 #endif
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339
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340 return true;
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341 }
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342 else
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343 {
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344 throw OrthancException(ErrorCode_InternalError);
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345 }
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346 }
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347 else
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348 {
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349 // Cannot transcode
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350 return false;
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351 }
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352 }
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353 }