Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 212:f276b175dcaf
delete resources
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 29 Nov 2012 10:13:49 +0100 |
| parents | 4453a010d0db |
| children | bb8c260c0092 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 0 | 3 * Copyright (C) 2012 Medical Physics Department, CHU of Liege, |
| 4 * Belgium | |
| 5 * | |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
| 33 #include "ServerIndex.h" | |
| 34 | |
| 62 | 35 using namespace Orthanc; |
| 0 | 36 |
| 6 | 37 #ifndef NOMINMAX |
| 2 | 38 #define NOMINMAX |
| 6 | 39 #endif |
| 40 | |
| 8 | 41 #include "EmbeddedResources.h" |
| 0 | 42 #include "../Core/Toolbox.h" |
| 43 #include "../Core/Uuid.h" | |
| 44 #include "../Core/DicomFormat/DicomArray.h" | |
| 45 #include "../Core/SQLite/Transaction.h" | |
| 46 #include "FromDcmtkBridge.h" | |
| 47 | |
| 48 #include <boost/lexical_cast.hpp> | |
| 49 #include <stdio.h> | |
| 108 | 50 #include <glog/logging.h> |
| 0 | 51 |
| 62 | 52 namespace Orthanc |
| 0 | 53 { |
| 54 namespace Internals | |
| 55 { | |
| 202 | 56 class ServerIndexListener : public IServerIndexListener |
|
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
57 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
58 private: |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
59 FileStorage& fileStorage_; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
60 bool hasRemainingLevel_; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
61 ResourceType remainingType_; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
62 std::string remainingPublicId_; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
63 |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
64 public: |
| 202 | 65 ServerIndexListener(FileStorage& fileStorage) : |
|
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
66 fileStorage_(fileStorage), |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
67 hasRemainingLevel_(false) |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
68 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
69 assert(ResourceType_Patient < ResourceType_Study && |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
70 ResourceType_Study < ResourceType_Series && |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
71 ResourceType_Series < ResourceType_Instance); |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
72 } |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
73 |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
74 void Reset() |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
75 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
76 hasRemainingLevel_ = false; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
77 } |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
78 |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
79 virtual void SignalRemainingAncestor(ResourceType parentType, |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
80 const std::string& publicId) |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
81 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
82 LOG(INFO) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
83 |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
84 if (hasRemainingLevel_) |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
85 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
86 if (parentType < remainingType_) |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
87 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
88 remainingType_ = parentType; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
89 remainingPublicId_ = publicId; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
90 } |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
91 } |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
92 else |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
93 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
94 hasRemainingLevel_ = true; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
95 remainingType_ = parentType; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
96 remainingPublicId_ = publicId; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
97 } |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
98 } |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
99 |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
100 virtual void SignalFileDeleted(const std::string& fileUuid) |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
101 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
102 assert(Toolbox::IsUuid(fileUuid)); |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
103 fileStorage_.Remove(fileUuid); |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
104 } |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
105 |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
106 bool HasRemainingLevel() const |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
107 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
108 return hasRemainingLevel_; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
109 } |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
110 |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
111 ResourceType GetRemainingType() const |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
112 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
113 assert(HasRemainingLevel()); |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
114 return remainingType_; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
115 } |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
116 |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
117 const std::string& GetRemainingPublicId() const |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
118 { |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
119 assert(HasRemainingLevel()); |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
120 return remainingPublicId_; |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
121 } |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
122 }; |
| 0 | 123 } |
| 124 | |
| 125 | |
| 212 | 126 bool ServerIndex::DeleteResource(Json::Value& target, |
| 0 | 127 const std::string& uuid, |
| 202 | 128 ResourceType expectedType) |
| 0 | 129 { |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
130 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 131 |
| 202 | 132 listener_->Reset(); |
|
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
133 |
| 202 | 134 std::auto_ptr<SQLite::Transaction> t(db_->StartTransaction()); |
| 135 t->Begin(); | |
|
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
136 |
| 202 | 137 int64_t id; |
| 138 ResourceType type; | |
| 139 if (!db_->LookupResource(uuid, id, type) || | |
| 140 expectedType != type) | |
| 0 | 141 { |
| 142 return false; | |
| 143 } | |
| 202 | 144 |
| 145 db_->DeleteResource(id); | |
| 0 | 146 |
| 202 | 147 if (listener_->HasRemainingLevel()) |
| 0 | 148 { |
| 202 | 149 ResourceType type = listener_->GetRemainingType(); |
| 150 const std::string& uuid = listener_->GetRemainingPublicId(); | |
| 0 | 151 |
| 152 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
| 204 | 153 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
| 202 | 154 target["RemainingAncestor"]["Type"] = ToString(type); |
| 0 | 155 target["RemainingAncestor"]["ID"] = uuid; |
| 156 } | |
| 157 else | |
| 158 { | |
| 159 target["RemainingAncestor"] = Json::nullValue; | |
| 160 } | |
| 161 | |
| 202 | 162 t->Commit(); |
| 163 | |
| 0 | 164 return true; |
| 165 } | |
| 166 | |
| 167 | |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
168 static void FlushThread(DatabaseWrapper* db, |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
169 boost::mutex* mutex) |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
170 { |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
171 // By default, wait for 10 seconds before flushing |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
172 unsigned int sleep = 10; |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
173 |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
174 { |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
175 boost::mutex::scoped_lock lock(*mutex); |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
176 std::string s = db->GetGlobalProperty(GlobalProperty_FlushSleep); |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
177 try |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
178 { |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
179 sleep = boost::lexical_cast<unsigned int>(s); |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
180 } |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
181 catch (boost::bad_lexical_cast&) |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
182 { |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
183 } |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
184 } |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
185 |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
186 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
187 |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
188 while (1) |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
189 { |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
190 boost::this_thread::sleep(boost::posix_time::seconds(sleep)); |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
191 boost::mutex::scoped_lock lock(*mutex); |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
192 db->FlushToDisk(); |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
193 } |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
194 } |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
195 |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
196 |
|
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
197 ServerIndex::ServerIndex(FileStorage& fileStorage, |
|
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
198 const std::string& dbPath) |
|
186
f68c039b0571
preparing refactoring of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
180
diff
changeset
|
199 { |
| 202 | 200 listener_.reset(new Internals::ServerIndexListener(fileStorage)); |
|
186
f68c039b0571
preparing refactoring of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
180
diff
changeset
|
201 |
|
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
202 if (dbPath == ":memory:") |
|
180
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
203 { |
| 202 | 204 db_.reset(new DatabaseWrapper(*listener_)); |
|
180
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
205 } |
|
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
206 else |
| 0 | 207 { |
|
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
208 boost::filesystem::path p = dbPath; |
|
180
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
209 |
|
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
210 try |
|
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
211 { |
|
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
212 boost::filesystem::create_directories(p); |
|
180
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
213 } |
|
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
214 catch (boost::filesystem::filesystem_error) |
|
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
215 { |
|
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
216 } |
|
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
217 |
| 202 | 218 db_.reset(new DatabaseWrapper(p.string() + "/index", *listener_)); |
| 0 | 219 } |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
220 |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
221 flushThread_ = boost::thread(FlushThread, db_.get(), &mutex_); |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
222 } |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
223 |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
224 |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
225 ServerIndex::~ServerIndex() |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
226 { |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
227 LOG(INFO) << "Stopping the database flushing thread"; |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
228 flushThread_.interrupt(); |
|
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
229 flushThread_.join(); |
| 0 | 230 } |
| 231 | |
| 232 | |
|
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
233 StoreStatus ServerIndex::Store(const DicomMap& dicomSummary, |
| 0 | 234 const std::string& fileUuid, |
| 235 uint64_t uncompressedFileSize, | |
| 236 const std::string& jsonUuid, | |
|
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
237 const std::string& remoteAet) |
| 0 | 238 { |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
239 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 240 |
| 178 | 241 DicomInstanceHasher hasher(dicomSummary); |
| 0 | 242 |
| 243 try | |
| 244 { | |
| 202 | 245 std::auto_ptr<SQLite::Transaction> t(db_->StartTransaction()); |
| 246 t->Begin(); | |
| 0 | 247 |
| 202 | 248 int64_t patient, study, series, instance; |
| 249 ResourceType type; | |
| 250 bool isNewSeries = false; | |
| 251 | |
| 252 // Do nothing if the instance already exists | |
| 253 if (db_->LookupResource(hasher.HashInstance(), patient, type)) | |
| 0 | 254 { |
| 202 | 255 assert(type == ResourceType_Instance); |
| 0 | 256 return StoreStatus_AlreadyStored; |
| 257 } | |
| 258 | |
| 202 | 259 // Create the instance |
| 260 instance = db_->CreateResource(hasher.HashInstance(), ResourceType_Instance); | |
| 261 | |
| 262 DicomMap dicom; | |
| 263 dicomSummary.ExtractInstanceInformation(dicom); | |
| 264 db_->SetMainDicomTags(instance, dicom); | |
| 265 | |
| 266 // Create the patient/study/series/instance hierarchy | |
| 267 if (!db_->LookupResource(hasher.HashSeries(), series, type)) | |
| 0 | 268 { |
| 202 | 269 // This is a new series |
| 270 isNewSeries = true; | |
| 271 series = db_->CreateResource(hasher.HashSeries(), ResourceType_Series); | |
| 272 dicomSummary.ExtractSeriesInformation(dicom); | |
| 273 db_->SetMainDicomTags(series, dicom); | |
| 274 db_->AttachChild(series, instance); | |
| 275 | |
| 276 if (!db_->LookupResource(hasher.HashStudy(), study, type)) | |
| 277 { | |
| 278 // This is a new study | |
| 279 study = db_->CreateResource(hasher.HashStudy(), ResourceType_Study); | |
| 280 dicomSummary.ExtractStudyInformation(dicom); | |
| 281 db_->SetMainDicomTags(study, dicom); | |
| 282 db_->AttachChild(study, series); | |
| 283 | |
| 284 if (!db_->LookupResource(hasher.HashPatient(), patient, type)) | |
| 285 { | |
| 286 // This is a new patient | |
| 287 patient = db_->CreateResource(hasher.HashPatient(), ResourceType_Patient); | |
| 288 dicomSummary.ExtractPatientInformation(dicom); | |
| 289 db_->SetMainDicomTags(patient, dicom); | |
| 290 db_->AttachChild(patient, study); | |
| 291 } | |
| 292 else | |
| 293 { | |
| 294 assert(type == ResourceType_Patient); | |
| 295 db_->AttachChild(patient, study); | |
| 296 } | |
| 297 } | |
| 298 else | |
| 299 { | |
| 300 assert(type == ResourceType_Study); | |
| 301 db_->AttachChild(study, series); | |
| 302 } | |
| 0 | 303 } |
| 304 else | |
| 305 { | |
| 202 | 306 assert(type == ResourceType_Series); |
| 307 db_->AttachChild(series, instance); | |
| 0 | 308 } |
| 309 | |
| 202 | 310 // Attach the files to the newly created instance |
| 311 db_->AttachFile(instance, AttachedFileType_Dicom, fileUuid, uncompressedFileSize); | |
| 312 db_->AttachFile(instance, AttachedFileType_Json, jsonUuid, 0); // TODO "0" | |
| 313 | |
| 314 // Attach the metadata | |
| 315 db_->SetMetadata(instance, MetadataType_Instance_ReceptionDate, Toolbox::GetNowIsoString()); | |
| 316 db_->SetMetadata(instance, MetadataType_Instance_RemoteAet, remoteAet); | |
| 317 | |
| 318 const DicomValue* value; | |
| 319 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
| 320 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
| 0 | 321 { |
| 202 | 322 db_->SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->AsString()); |
| 0 | 323 } |
| 324 | |
| 202 | 325 if (isNewSeries) |
| 326 { | |
| 327 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL || | |
| 328 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL || | |
| 329 (value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
| 330 { | |
| 331 db_->SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->AsString()); | |
| 332 } | |
| 333 } | |
| 334 | |
|
205
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
335 // Check whether the series of this new instance is now completed |
|
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
336 SeriesStatus seriesStatus = GetSeriesStatus(series); |
|
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
337 if (seriesStatus == SeriesStatus_Complete) |
|
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
338 { |
|
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
339 db_->LogChange(ChangeType_CompletedSeries, series, ResourceType_Series); |
|
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
340 } |
|
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
341 |
| 202 | 342 t->Commit(); |
| 343 | |
| 0 | 344 return StoreStatus_Success; |
| 345 } | |
| 62 | 346 catch (OrthancException& e) |
| 0 | 347 { |
| 202 | 348 LOG(ERROR) << "EXCEPTION2 [" << e.What() << "]" << " " << db_->GetErrorMessage(); |
| 0 | 349 } |
| 350 | |
| 351 return StoreStatus_Failure; | |
| 352 } | |
| 353 | |
| 354 | |
|
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
355 StoreStatus ServerIndex::Store(FileStorage& storage, |
| 0 | 356 const char* dicomFile, |
| 357 size_t dicomSize, | |
| 358 const DicomMap& dicomSummary, | |
| 359 const Json::Value& dicomJson, | |
|
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
360 const std::string& remoteAet) |
| 0 | 361 { |
| 362 std::string fileUuid = storage.Create(dicomFile, dicomSize); | |
| 363 std::string jsonUuid = storage.Create(dicomJson.toStyledString()); | |
|
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
364 StoreStatus status = Store(dicomSummary, fileUuid, dicomSize, jsonUuid, remoteAet); |
| 0 | 365 |
| 366 if (status != StoreStatus_Success) | |
| 367 { | |
| 147 | 368 storage.Remove(fileUuid); |
| 369 storage.Remove(jsonUuid); | |
| 0 | 370 } |
| 371 | |
| 372 switch (status) | |
| 373 { | |
| 374 case StoreStatus_Success: | |
|
194
0186ac92810c
fixes for Ubuntu 10.04
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
193
diff
changeset
|
375 LOG(INFO) << "New instance stored"; |
| 0 | 376 break; |
| 377 | |
| 378 case StoreStatus_AlreadyStored: | |
|
194
0186ac92810c
fixes for Ubuntu 10.04
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
193
diff
changeset
|
379 LOG(INFO) << "Already stored"; |
| 0 | 380 break; |
| 381 | |
| 382 case StoreStatus_Failure: | |
| 138 | 383 LOG(ERROR) << "Store failure"; |
| 0 | 384 break; |
| 385 } | |
| 386 | |
| 387 return status; | |
| 388 } | |
| 389 | |
|
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
390 uint64_t ServerIndex::GetTotalCompressedSize() |
| 0 | 391 { |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
392 boost::mutex::scoped_lock lock(mutex_); |
| 202 | 393 return db_->GetTotalCompressedSize(); |
| 0 | 394 } |
| 395 | |
|
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
396 uint64_t ServerIndex::GetTotalUncompressedSize() |
|
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
397 { |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
398 boost::mutex::scoped_lock lock(mutex_); |
| 202 | 399 return db_->GetTotalUncompressedSize(); |
|
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
400 } |
|
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
401 |
|
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
402 |
| 199 | 403 SeriesStatus ServerIndex::GetSeriesStatus(int id) |
| 404 { | |
| 405 // Get the expected number of instances in this series (from the metadata) | |
| 202 | 406 std::string s = db_->GetMetadata(id, MetadataType_Series_ExpectedNumberOfInstances); |
| 199 | 407 |
| 408 size_t expected; | |
| 409 try | |
| 410 { | |
| 411 expected = boost::lexical_cast<size_t>(s); | |
| 412 if (expected < 0) | |
| 413 { | |
| 414 return SeriesStatus_Unknown; | |
| 415 } | |
| 416 } | |
| 417 catch (boost::bad_lexical_cast&) | |
| 418 { | |
| 419 return SeriesStatus_Unknown; | |
| 420 } | |
| 421 | |
| 422 // Loop over the instances of this series | |
| 423 std::list<int64_t> children; | |
| 202 | 424 db_->GetChildrenInternalId(children, id); |
| 199 | 425 |
| 426 std::set<size_t> instances; | |
| 427 for (std::list<int64_t>::const_iterator | |
| 428 it = children.begin(); it != children.end(); it++) | |
| 429 { | |
| 430 // Get the index of this instance in the series | |
| 202 | 431 s = db_->GetMetadata(*it, MetadataType_Instance_IndexInSeries); |
| 199 | 432 size_t index; |
| 433 try | |
| 434 { | |
| 435 index = boost::lexical_cast<size_t>(s); | |
| 436 } | |
| 437 catch (boost::bad_lexical_cast&) | |
| 438 { | |
| 439 return SeriesStatus_Unknown; | |
| 440 } | |
| 441 | |
| 442 if (index <= 0 || index > expected) | |
| 443 { | |
| 444 // Out-of-range instance index | |
| 445 return SeriesStatus_Inconsistent; | |
| 446 } | |
| 447 | |
| 448 if (instances.find(index) != instances.end()) | |
| 449 { | |
| 450 // Twice the same instance index | |
| 451 return SeriesStatus_Inconsistent; | |
| 452 } | |
| 453 | |
| 454 instances.insert(index); | |
| 455 } | |
| 456 | |
| 457 if (instances.size() == expected) | |
| 458 { | |
| 459 return SeriesStatus_Complete; | |
| 460 } | |
| 461 else | |
| 462 { | |
| 463 return SeriesStatus_Missing; | |
| 464 } | |
| 465 } | |
| 466 | |
| 467 | |
| 468 | |
| 202 | 469 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
| 470 int64_t resourceId) | |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
471 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
472 DicomMap tags; |
| 202 | 473 db_->GetMainDicomTags(tags, resourceId); |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
474 target["MainDicomTags"] = Json::objectValue; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
475 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags); |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
476 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
477 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
478 bool ServerIndex::LookupResource(Json::Value& result, |
| 199 | 479 const std::string& publicId, |
| 480 ResourceType expectedType) | |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
481 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
482 result = Json::objectValue; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
483 |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
484 boost::mutex::scoped_lock lock(mutex_); |
| 199 | 485 |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
486 // Lookup for the requested resource |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
487 int64_t id; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
488 ResourceType type; |
| 202 | 489 if (!db_->LookupResource(publicId, id, type) || |
| 199 | 490 type != expectedType) |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
491 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
492 return false; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
493 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
494 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
495 // Find the parent resource (if it exists) |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
496 if (type != ResourceType_Patient) |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
497 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
498 int64_t parentId; |
| 202 | 499 if (!db_->LookupParent(parentId, id)) |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
500 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
501 throw OrthancException(ErrorCode_InternalError); |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
502 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
503 |
| 202 | 504 std::string parent = db_->GetPublicId(parentId); |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
505 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
506 switch (type) |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
507 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
508 case ResourceType_Study: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
509 result["ParentPatient"] = parent; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
510 break; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
511 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
512 case ResourceType_Series: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
513 result["ParentStudy"] = parent; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
514 break; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
515 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
516 case ResourceType_Instance: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
517 result["ParentSeries"] = parent; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
518 break; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
519 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
520 default: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
521 throw OrthancException(ErrorCode_InternalError); |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
522 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
523 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
524 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
525 // List the children resources |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
526 std::list<std::string> children; |
| 202 | 527 db_->GetChildrenPublicId(children, id); |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
528 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
529 if (type != ResourceType_Instance) |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
530 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
531 Json::Value c = Json::arrayValue; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
532 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
533 for (std::list<std::string>::const_iterator |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
534 it = children.begin(); it != children.end(); it++) |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
535 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
536 c.append(*it); |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
537 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
538 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
539 switch (type) |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
540 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
541 case ResourceType_Patient: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
542 result["Studies"] = c; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
543 break; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
544 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
545 case ResourceType_Study: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
546 result["Series"] = c; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
547 break; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
548 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
549 case ResourceType_Series: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
550 result["Instances"] = c; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
551 break; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
552 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
553 default: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
554 throw OrthancException(ErrorCode_InternalError); |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
555 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
556 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
557 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
558 // Set the resource type |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
559 switch (type) |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
560 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
561 case ResourceType_Patient: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
562 result["Type"] = "Patient"; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
563 break; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
564 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
565 case ResourceType_Study: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
566 result["Type"] = "Study"; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
567 break; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
568 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
569 case ResourceType_Series: |
| 199 | 570 { |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
571 result["Type"] = "Series"; |
| 199 | 572 result["Status"] = ToString(GetSeriesStatus(id)); |
| 573 | |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
574 int i; |
| 202 | 575 if (db_->GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
576 result["ExpectedNumberOfInstances"] = i; |
| 202 | 577 else |
| 199 | 578 result["ExpectedNumberOfInstances"] = Json::nullValue; |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
579 |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
580 break; |
| 199 | 581 } |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
582 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
583 case ResourceType_Instance: |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
584 { |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
585 result["Type"] = "Instance"; |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
586 |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
587 std::string fileUuid; |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
588 uint64_t uncompressedSize; |
| 202 | 589 if (!db_->LookupFile(id, AttachedFileType_Dicom, fileUuid, uncompressedSize)) |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
590 { |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
591 throw OrthancException(ErrorCode_InternalError); |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
592 } |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
593 |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
594 result["FileSize"] = static_cast<unsigned int>(uncompressedSize); |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
595 result["FileUuid"] = fileUuid; |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
596 |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
597 int i; |
| 202 | 598 if (db_->GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
599 result["IndexInSeries"] = i; |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
600 else |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
601 result["IndexInSeries"] = Json::nullValue; |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
602 |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
603 break; |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
604 } |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
605 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
606 default: |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
607 throw OrthancException(ErrorCode_InternalError); |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
608 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
609 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
610 // Record the remaining information |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
611 result["ID"] = publicId; |
| 202 | 612 MainDicomTagsToJson(result, id); |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
613 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
614 return true; |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
615 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
616 |
| 0 | 617 |
|
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
618 bool ServerIndex::GetFile(std::string& fileUuid, |
|
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
619 CompressionType& compressionType, |
|
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
620 const std::string& instanceUuid, |
|
197
530a25320461
removal of text as ids in sqlite db
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
194
diff
changeset
|
621 AttachedFileType contentType) |
| 0 | 622 { |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
623 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 624 |
|
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
625 int64_t id; |
|
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
626 ResourceType type; |
| 202 | 627 if (!db_->LookupResource(instanceUuid, id, type) || |
|
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
628 type != ResourceType_Instance) |
|
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
629 { |
|
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
630 throw OrthancException(ErrorCode_InternalError); |
|
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
631 } |
|
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
632 |
|
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
633 uint64_t compressedSize, uncompressedSize; |
|
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
634 |
| 202 | 635 return db_->LookupFile(id, contentType, fileUuid, compressedSize, uncompressedSize, compressionType); |
|
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
636 } |
|
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
637 |
|
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
638 |
|
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
639 |
| 0 | 640 void ServerIndex::GetAllUuids(Json::Value& target, |
| 190 | 641 ResourceType resourceType) |
| 0 | 642 { |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
643 boost::mutex::scoped_lock lock(mutex_); |
| 202 | 644 db_->GetAllPublicIds(target, resourceType); |
| 0 | 645 } |
| 646 | |
| 647 | |
| 648 bool ServerIndex::GetChanges(Json::Value& target, | |
| 204 | 649 int64_t since, |
| 0 | 650 unsigned int maxResults) |
| 651 { | |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
652 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 653 |
| 204 | 654 db_->GetChanges(target, since, maxResults); |
| 0 | 655 |
| 204 | 656 return true; |
| 0 | 657 } |
| 658 } |