Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi.cpp @ 229:f2349bab5fe7
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 30 Nov 2012 11:00:40 +0100 |
parents | OrthancServer/OrthancRestApi2.cpp@209ca3f6db62 |
children | ae2367145b49 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012 Medical Physics Department, CHU of Liege, |
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4 * Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
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33 #include "OrthancRestApi2.h" |
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34 |
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35 #include "../Core/HttpServer/FilesystemHttpSender.h" |
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36 #include "../Core/Uuid.h" |
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37 #include "DicomProtocol/DicomUserConnection.h" |
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38 #include "FromDcmtkBridge.h" |
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39 #include "OrthancInitialization.h" |
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40 #include "ServerToolbox.h" |
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41 |
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42 #include <dcmtk/dcmdata/dcistrmb.h> |
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43 #include <dcmtk/dcmdata/dcfilefo.h> |
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44 #include <boost/lexical_cast.hpp> |
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45 #include <glog/logging.h> |
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46 |
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47 |
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48 #define RETRIEVE_CONTEXT(call) \ |
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49 OrthancRestApi2& contextApi = \ |
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50 dynamic_cast<OrthancRestApi2&>(call.GetContext()); \ |
225 | 51 ServerContext& context = contextApi.GetContext() |
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52 |
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53 #define RETRIEVE_MODALITIES(call) \ |
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54 const OrthancRestApi2::Modalities& modalities = \ |
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55 dynamic_cast<OrthancRestApi2&>(call.GetContext()).GetModalities(); |
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56 |
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57 |
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58 |
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59 namespace Orthanc |
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60 { |
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61 // DICOM SCU ---------------------------------------------------------------- |
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62 |
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63 static void ConnectToModality(DicomUserConnection& connection, |
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64 const std::string& name) |
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65 { |
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66 std::string aet, address; |
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67 int port; |
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68 GetDicomModality(name, aet, address, port); |
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69 connection.SetLocalApplicationEntityTitle(GetGlobalStringParameter("DicomAet", "ORTHANC")); |
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70 connection.SetDistantApplicationEntityTitle(aet); |
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71 connection.SetDistantHost(address); |
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72 connection.SetDistantPort(port); |
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73 connection.Open(); |
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74 } |
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75 |
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76 static bool MergeQueryAndTemplate(DicomMap& result, |
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77 const std::string& postData) |
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78 { |
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79 Json::Value query; |
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80 Json::Reader reader; |
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81 |
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82 if (!reader.parse(postData, query) || |
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83 query.type() != Json::objectValue) |
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84 { |
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85 return false; |
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86 } |
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87 |
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88 Json::Value::Members members = query.getMemberNames(); |
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89 for (size_t i = 0; i < members.size(); i++) |
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90 { |
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91 DicomTag t = FromDcmtkBridge::FindTag(members[i]); |
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92 result.SetValue(t, query[members[i]].asString()); |
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93 } |
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94 |
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95 return true; |
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96 } |
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97 |
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98 static void DicomFindPatient(RestApi::PostCall& call) |
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99 { |
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100 DicomMap m; |
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101 DicomMap::SetupFindPatientTemplate(m); |
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102 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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103 { |
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104 return; |
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105 } |
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106 |
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107 DicomUserConnection connection; |
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108 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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109 |
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110 DicomFindAnswers answers; |
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111 connection.FindPatient(answers, m); |
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112 |
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113 Json::Value result; |
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114 answers.ToJson(result); |
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115 call.GetOutput().AnswerJson(result); |
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116 } |
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117 |
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118 static void DicomFindStudy(RestApi::PostCall& call) |
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119 { |
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120 DicomMap m; |
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121 DicomMap::SetupFindStudyTemplate(m); |
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122 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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123 { |
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124 return; |
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125 } |
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126 |
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127 if (m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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128 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) |
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129 { |
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130 return; |
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131 } |
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132 |
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133 DicomUserConnection connection; |
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134 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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135 |
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136 DicomFindAnswers answers; |
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137 connection.FindStudy(answers, m); |
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138 |
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139 Json::Value result; |
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140 answers.ToJson(result); |
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141 call.GetOutput().AnswerJson(result); |
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142 } |
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143 |
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144 static void DicomFindSeries(RestApi::PostCall& call) |
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145 { |
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146 DicomMap m; |
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147 DicomMap::SetupFindSeriesTemplate(m); |
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148 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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149 { |
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150 return; |
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151 } |
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152 |
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153 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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154 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) || |
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155 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2) |
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156 { |
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157 return; |
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158 } |
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159 |
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160 DicomUserConnection connection; |
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161 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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162 |
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163 DicomFindAnswers answers; |
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164 connection.FindSeries(answers, m); |
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165 |
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166 Json::Value result; |
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167 answers.ToJson(result); |
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168 call.GetOutput().AnswerJson(result); |
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169 } |
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170 |
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171 static void DicomFind(RestApi::PostCall& call) |
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172 { |
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173 DicomMap m; |
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174 DicomMap::SetupFindPatientTemplate(m); |
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175 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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176 { |
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177 return; |
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178 } |
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179 |
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180 DicomUserConnection connection; |
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181 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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182 |
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183 DicomFindAnswers patients; |
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184 connection.FindPatient(patients, m); |
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185 |
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186 // Loop over the found patients |
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187 Json::Value result = Json::arrayValue; |
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188 for (size_t i = 0; i < patients.GetSize(); i++) |
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189 { |
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190 Json::Value patient(Json::objectValue); |
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191 FromDcmtkBridge::ToJson(patient, patients.GetAnswer(i)); |
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192 |
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193 DicomMap::SetupFindStudyTemplate(m); |
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194 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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195 { |
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196 return; |
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197 } |
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198 m.CopyTagIfExists(patients.GetAnswer(i), DICOM_TAG_PATIENT_ID); |
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199 |
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200 DicomFindAnswers studies; |
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201 connection.FindStudy(studies, m); |
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202 |
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203 patient["Studies"] = Json::arrayValue; |
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204 |
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205 // Loop over the found studies |
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206 for (size_t j = 0; j < studies.GetSize(); j++) |
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207 { |
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208 Json::Value study(Json::objectValue); |
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209 FromDcmtkBridge::ToJson(study, studies.GetAnswer(j)); |
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210 |
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211 DicomMap::SetupFindSeriesTemplate(m); |
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212 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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213 { |
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214 return; |
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215 } |
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216 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_PATIENT_ID); |
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217 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_STUDY_INSTANCE_UID); |
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218 |
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219 DicomFindAnswers series; |
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220 connection.FindSeries(series, m); |
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221 |
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222 // Loop over the found series |
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223 study["Series"] = Json::arrayValue; |
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224 for (size_t k = 0; k < series.GetSize(); k++) |
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225 { |
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226 Json::Value series2(Json::objectValue); |
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227 FromDcmtkBridge::ToJson(series2, series.GetAnswer(k)); |
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228 study["Series"].append(series2); |
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229 } |
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230 |
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231 patient["Studies"].append(study); |
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232 } |
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233 |
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234 result.append(patient); |
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235 } |
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236 |
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237 call.GetOutput().AnswerJson(result); |
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238 } |
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239 |
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240 |
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241 static void DicomStore(RestApi::PostCall& call) |
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242 { |
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243 RETRIEVE_CONTEXT(call); |
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244 |
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245 DicomUserConnection connection; |
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246 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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247 |
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248 Json::Value found; |
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249 if (context.GetIndex().LookupResource(found, call.GetPostBody(), ResourceType_Series)) |
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250 { |
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251 // The UUID corresponds to a series |
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252 for (Json::Value::ArrayIndex i = 0; i < found["Instances"].size(); i++) |
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253 { |
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254 std::string instanceId = found["Instances"][i].asString(); |
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255 std::string dicom; |
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256 context.ReadFile(dicom, instanceId, AttachedFileType_Dicom); |
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257 connection.Store(dicom); |
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258 } |
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259 |
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260 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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261 } |
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262 else if (context.GetIndex().LookupResource(found, call.GetPostBody(), ResourceType_Instance)) |
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263 { |
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264 // The UUID corresponds to an instance |
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265 std::string instanceId = call.GetPostBody(); |
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266 std::string dicom; |
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267 context.ReadFile(dicom, instanceId, AttachedFileType_Dicom); |
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268 connection.Store(dicom); |
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269 |
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270 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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271 } |
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272 else |
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273 { |
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274 // The POST body is not a known resource, assume that it |
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275 // contains a raw DICOM instance |
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276 connection.Store(call.GetPostBody()); |
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277 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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278 } |
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279 } |
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280 |
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281 |
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282 |
210
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283 // System information ------------------------------------------------------- |
211 | 284 |
285 static void ServeRoot(RestApi::GetCall& call) | |
286 { | |
287 call.GetOutput().Redirect("app/explorer.html"); | |
288 } | |
210
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289 |
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290 static void GetSystemInformation(RestApi::GetCall& call) |
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291 { |
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292 RETRIEVE_CONTEXT(call); |
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293 |
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294 Json::Value result = Json::objectValue; |
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295 result["Version"] = ORTHANC_VERSION; |
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296 result["Name"] = GetGlobalStringParameter("Name", ""); |
227
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297 result["TotalCompressedSize"] = boost::lexical_cast<std::string> |
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298 (context.GetIndex().GetTotalCompressedSize()); |
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299 result["TotalUncompressedSize"] = boost::lexical_cast<std::string> |
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300 (context.GetIndex().GetTotalUncompressedSize()); |
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301 |
210
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302 call.GetOutput().AnswerJson(result); |
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303 } |
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304 |
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305 |
211 | 306 // List all the patients, studies, series or instances ---------------------- |
307 | |
308 template <enum ResourceType resourceType> | |
309 static void ListResources(RestApi::GetCall& call) | |
310 { | |
311 RETRIEVE_CONTEXT(call); | |
312 | |
313 Json::Value result; | |
314 context.GetIndex().GetAllUuids(result, resourceType); | |
315 call.GetOutput().AnswerJson(result); | |
316 } | |
317 | |
212 | 318 template <enum ResourceType resourceType> |
319 static void GetSingleResource(RestApi::GetCall& call) | |
320 { | |
321 RETRIEVE_CONTEXT(call); | |
322 | |
323 Json::Value result; | |
324 if (context.GetIndex().LookupResource(result, call.GetUriComponent("id", ""), resourceType)) | |
325 { | |
326 call.GetOutput().AnswerJson(result); | |
327 } | |
328 } | |
329 | |
330 template <enum ResourceType resourceType> | |
331 static void DeleteSingleResource(RestApi::DeleteCall& call) | |
332 { | |
333 RETRIEVE_CONTEXT(call); | |
334 | |
335 Json::Value result; | |
336 if (context.GetIndex().DeleteResource(result, call.GetUriComponent("id", ""), resourceType)) | |
337 { | |
338 call.GetOutput().AnswerJson(result); | |
339 } | |
340 } | |
341 | |
211 | 342 |
210
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343 // Changes API -------------------------------------------------------------- |
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344 |
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345 static void GetChanges(RestApi::GetCall& call) |
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346 { |
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347 RETRIEVE_CONTEXT(call); |
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348 |
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349 static const unsigned int MAX_RESULTS = 100; |
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350 ServerIndex& index = context.GetIndex(); |
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351 |
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352 //std::string filter = GetArgument(getArguments, "filter", ""); |
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353 int64_t since; |
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354 unsigned int limit; |
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355 try |
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356 { |
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357 since = boost::lexical_cast<int64_t>(call.GetArgument("since", "0")); |
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358 limit = boost::lexical_cast<unsigned int>(call.GetArgument("limit", "0")); |
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359 } |
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360 catch (boost::bad_lexical_cast) |
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361 { |
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362 return; |
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363 } |
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364 |
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365 if (limit == 0 || limit > MAX_RESULTS) |
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366 { |
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367 limit = MAX_RESULTS; |
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368 } |
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369 |
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370 Json::Value result; |
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371 if (index.GetChanges(result, since, limit)) |
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372 { |
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373 call.GetOutput().AnswerJson(result); |
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374 } |
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375 } |
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376 |
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377 |
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378 |
213
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379 // Get information about a single instance ---------------------------------- |
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380 |
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381 static void GetInstanceFile(RestApi::GetCall& call) |
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382 { |
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383 RETRIEVE_CONTEXT(call); |
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384 |
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385 std::string publicId = call.GetUriComponent("id", ""); |
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386 context.AnswerFile(call.GetOutput(), publicId, AttachedFileType_Dicom); |
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387 } |
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388 |
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389 |
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390 template <bool simplify> |
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391 static void GetInstanceTags(RestApi::GetCall& call) |
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392 { |
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393 RETRIEVE_CONTEXT(call); |
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394 |
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395 std::string publicId = call.GetUriComponent("id", ""); |
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396 |
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397 Json::Value full; |
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398 context.ReadJson(full, publicId); |
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399 |
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400 if (simplify) |
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401 { |
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402 Json::Value simplified; |
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403 SimplifyTags(simplified, full); |
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404 call.GetOutput().AnswerJson(simplified); |
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405 } |
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406 else |
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407 { |
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408 call.GetOutput().AnswerJson(full); |
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409 } |
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410 } |
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411 |
214 | 412 |
413 static void ListFrames(RestApi::GetCall& call) | |
414 { | |
415 RETRIEVE_CONTEXT(call); | |
416 | |
417 Json::Value instance; | |
418 if (context.GetIndex().LookupResource(instance, call.GetUriComponent("id", ""), ResourceType_Instance)) | |
419 { | |
420 unsigned int numberOfFrames = 1; | |
421 | |
422 try | |
423 { | |
424 Json::Value tmp = instance["MainDicomTags"]["NumberOfFrames"]; | |
425 numberOfFrames = boost::lexical_cast<unsigned int>(tmp.asString()); | |
426 } | |
427 catch (...) | |
428 { | |
429 } | |
430 | |
431 Json::Value result = Json::arrayValue; | |
432 for (unsigned int i = 0; i < numberOfFrames; i++) | |
433 { | |
434 result.append(i); | |
435 } | |
436 | |
437 call.GetOutput().AnswerJson(result); | |
438 } | |
439 } | |
440 | |
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441 |
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442 template <enum ImageExtractionMode mode> |
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443 static void GetImage(RestApi::GetCall& call) |
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444 { |
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445 RETRIEVE_CONTEXT(call); |
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446 |
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447 std::string frameId = call.GetUriComponent("frame", "0"); |
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448 |
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449 unsigned int frame; |
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450 try |
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451 { |
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452 frame = boost::lexical_cast<unsigned int>(frameId); |
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453 } |
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454 catch (boost::bad_lexical_cast) |
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455 { |
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456 return; |
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457 } |
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458 |
227
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459 std::string publicId = call.GetUriComponent("id", ""); |
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460 std::string dicomContent, png; |
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461 context.ReadFile(dicomContent, publicId, AttachedFileType_Dicom); |
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462 |
227
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463 try |
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464 { |
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465 FromDcmtkBridge::ExtractPngImage(png, dicomContent, frame, mode); |
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466 call.GetOutput().AnswerBuffer(png, "image/png"); |
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467 } |
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468 catch (OrthancException& e) |
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469 { |
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470 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange) |
215
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471 { |
227
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472 // The frame number is out of the range for this DICOM |
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473 // instance, the resource is not existent |
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474 } |
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475 else |
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476 { |
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477 std::string root = ""; |
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478 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
215
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479 { |
227
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480 root += "../"; |
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481 } |
218 | 482 |
227
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483 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
215
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484 } |
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485 } |
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486 } |
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487 |
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488 |
216
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489 // Upload of DICOM files through HTTP --------------------------------------- |
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490 |
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491 static void UploadDicomFile(RestApi::PostCall& call) |
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492 { |
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493 RETRIEVE_CONTEXT(call); |
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494 |
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495 const std::string& postData = call.GetPostBody(); |
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496 |
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497 LOG(INFO) << "Receiving a DICOM file of " << postData.size() << " bytes through HTTP"; |
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498 |
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499 // Prepare an input stream for the memory buffer |
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500 DcmInputBufferStream is; |
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501 if (postData.size() > 0) |
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502 { |
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503 is.setBuffer(&postData[0], postData.size()); |
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504 } |
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505 is.setEos(); |
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506 |
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507 DcmFileFormat dicomFile; |
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508 if (!dicomFile.read(is).good()) |
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509 { |
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510 call.GetOutput().SignalError(Orthanc_HttpStatus_415_UnsupportedMediaType); |
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511 return; |
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512 } |
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513 |
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514 DicomMap dicomSummary; |
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515 FromDcmtkBridge::Convert(dicomSummary, *dicomFile.getDataset()); |
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516 |
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517 DicomInstanceHasher hasher(dicomSummary); |
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518 |
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519 Json::Value dicomJson; |
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520 FromDcmtkBridge::ToJson(dicomJson, *dicomFile.getDataset()); |
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521 |
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522 StoreStatus status = StoreStatus_Failure; |
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523 if (postData.size() > 0) |
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524 { |
224
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525 status = context.Store |
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526 (reinterpret_cast<const char*>(&postData[0]), |
216
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527 postData.size(), dicomSummary, dicomJson, ""); |
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528 } |
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529 |
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530 Json::Value result = Json::objectValue; |
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531 |
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532 if (status != StoreStatus_Failure) |
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533 { |
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534 result["ID"] = hasher.HashInstance(); |
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535 result["Path"] = GetBasePath(ResourceType_Instance, hasher.HashInstance()); |
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536 } |
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537 |
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538 result["Status"] = ToString(status); |
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539 call.GetOutput().AnswerJson(result); |
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540 } |
215
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541 |
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542 |
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543 // DICOM bridge ------------------------------------------------------------- |
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544 |
227
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545 static bool IsExistingModality(const OrthancRestApi2::Modalities& modalities, |
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546 const std::string& id) |
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547 { |
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548 return modalities.find(id) != modalities.end(); |
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549 } |
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550 |
210
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551 static void ListModalities(RestApi::GetCall& call) |
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552 { |
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553 RETRIEVE_MODALITIES(call); |
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554 |
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555 Json::Value result = Json::arrayValue; |
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556 for (OrthancRestApi2::Modalities::const_iterator |
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557 it = modalities.begin(); it != modalities.end(); it++) |
210
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558 { |
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559 result.append(*it); |
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560 } |
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561 |
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562 call.GetOutput().AnswerJson(result); |
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563 } |
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564 |
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565 |
227
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566 static void ListModalityOperations(RestApi::GetCall& call) |
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567 { |
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568 RETRIEVE_MODALITIES(call); |
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569 |
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570 std::string id = call.GetUriComponent("id", ""); |
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571 if (IsExistingModality(modalities, id)) |
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572 { |
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573 Json::Value result = Json::arrayValue; |
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574 result.append("find-patient"); |
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575 result.append("find-study"); |
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576 result.append("find-series"); |
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577 result.append("find"); |
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578 result.append("store"); |
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579 call.GetOutput().AnswerJson(result); |
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580 } |
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581 } |
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582 |
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583 |
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584 |
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585 // Registration of the various REST handlers -------------------------------- |
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586 |
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587 OrthancRestApi2::OrthancRestApi2(ServerContext& context) : |
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588 context_(context) |
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589 { |
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590 GetListOfDicomModalities(modalities_); |
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591 |
211 | 592 Register("/", ServeRoot); |
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593 Register("/system", GetSystemInformation); |
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594 Register("/changes", GetChanges); |
211 | 595 |
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596 Register("/instances", UploadDicomFile); |
211 | 597 Register("/instances", ListResources<ResourceType_Instance>); |
598 Register("/patients", ListResources<ResourceType_Patient>); | |
599 Register("/series", ListResources<ResourceType_Series>); | |
600 Register("/studies", ListResources<ResourceType_Study>); | |
212 | 601 |
602 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); | |
603 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); | |
604 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); | |
605 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); | |
606 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); | |
607 Register("/series/{id}", GetSingleResource<ResourceType_Series>); | |
608 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); | |
609 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); | |
213
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610 |
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611 Register("/instances/{id}/file", GetInstanceFile); |
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612 Register("/instances/{id}/tags", GetInstanceTags<false>); |
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613 Register("/instances/{id}/simplified-tags", GetInstanceTags<true>); |
214 | 614 Register("/instances/{id}/frames", ListFrames); |
213
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615 |
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616 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
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617 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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618 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
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619 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
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620 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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621 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
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622 |
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623 Register("/modalities", ListModalities); |
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624 Register("/modalities/{id}", ListModalityOperations); |
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625 Register("/modalities/{id}/find-patient", DicomFindPatient); |
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626 Register("/modalities/{id}/find-study", DicomFindStudy); |
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627 Register("/modalities/{id}/find-series", DicomFindSeries); |
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628 Register("/modalities/{id}/find", DicomFind); |
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629 Register("/modalities/{id}/store", DicomStore); |
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630 |
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631 // TODO : "content" |
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632 } |
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633 } |