Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancFindRequestHandler.cpp @ 4704:f0038043fb97 openssl-3.x
removed OpenSSL license exception, as OpenSSL 3.0 was relicensed under Apache 2.0
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 22 Jun 2021 07:37:20 +0200 |
parents | 8efeaba1b7f9 |
children | 2e71a08eea15 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * This program is distributed in the hope that it will be useful, but |
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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15 * General Public License for more details. |
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16 * |
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17 * You should have received a copy of the GNU General Public License |
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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19 **/ |
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20 |
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21 |
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22 #include "PrecompiledHeadersServer.h" |
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23 #include "OrthancFindRequestHandler.h" |
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24 |
4045 | 25 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
26 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
27 #include "../../OrthancFramework/Sources/Logging.h" | |
28 #include "../../OrthancFramework/Sources/Lua/LuaFunctionCall.h" | |
29 #include "../../OrthancFramework/Sources/MetricsRegistry.h" | |
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30 #include "OrthancConfiguration.h" |
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31 #include "Search/DatabaseLookup.h" |
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32 #include "ServerContext.h" |
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33 #include "ServerToolbox.h" |
608 | 34 |
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35 #include <boost/regex.hpp> |
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36 |
608 | 37 |
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38 namespace Orthanc |
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39 { |
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40 static void GetChildren(std::list<std::string>& target, |
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41 ServerIndex& index, |
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42 const std::list<std::string>& source) |
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43 { |
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44 target.clear(); |
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45 |
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46 for (std::list<std::string>::const_iterator |
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47 it = source.begin(); it != source.end(); ++it) |
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48 { |
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49 std::list<std::string> tmp; |
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50 index.GetChildren(tmp, *it); |
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51 target.splice(target.end(), tmp); |
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52 } |
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53 } |
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54 |
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55 |
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56 static void StoreSetOfStrings(DicomMap& result, |
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57 const DicomTag& tag, |
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58 const std::set<std::string>& values) |
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59 { |
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60 bool isFirst = true; |
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61 |
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62 std::string s; |
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63 for (std::set<std::string>::const_iterator |
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64 it = values.begin(); it != values.end(); ++it) |
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65 { |
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66 if (isFirst) |
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67 { |
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68 isFirst = false; |
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69 } |
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70 else |
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71 { |
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72 s += "\\"; |
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73 } |
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74 |
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75 s += *it; |
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76 } |
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77 |
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78 result.SetValue(tag, s, false); |
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79 } |
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80 |
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81 |
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82 static void ComputePatientCounters(DicomMap& result, |
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83 ServerIndex& index, |
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84 const std::string& patient, |
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85 const DicomMap& query) |
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86 { |
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87 std::list<std::string> studies; |
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88 index.GetChildren(studies, patient); |
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89 |
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90 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES)) |
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91 { |
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92 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES, |
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93 boost::lexical_cast<std::string>(studies.size()), false); |
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94 } |
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95 |
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96 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) && |
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97 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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98 { |
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99 return; |
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100 } |
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101 |
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102 std::list<std::string> series; |
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103 GetChildren(series, index, studies); |
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104 studies.clear(); // This information is useless below |
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105 |
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106 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES)) |
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107 { |
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108 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES, |
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109 boost::lexical_cast<std::string>(series.size()), false); |
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110 } |
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111 |
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112 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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113 { |
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114 return; |
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115 } |
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116 |
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117 std::list<std::string> instances; |
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118 GetChildren(instances, index, series); |
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119 |
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120 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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121 { |
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122 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES, |
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123 boost::lexical_cast<std::string>(instances.size()), false); |
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124 } |
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125 } |
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126 |
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127 |
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128 static void ComputeStudyCounters(DicomMap& result, |
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129 ServerContext& context, |
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130 const std::string& study, |
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131 const DicomMap& query) |
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132 { |
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133 ServerIndex& index = context.GetIndex(); |
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134 |
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135 std::list<std::string> series; |
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136 index.GetChildren(series, study); |
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137 |
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138 if (query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES)) |
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139 { |
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140 result.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES, |
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141 boost::lexical_cast<std::string>(series.size()), false); |
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142 } |
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143 |
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144 if (query.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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145 { |
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146 std::set<std::string> values; |
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147 |
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148 for (std::list<std::string>::const_iterator |
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149 it = series.begin(); it != series.end(); ++it) |
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150 { |
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151 DicomMap tags; |
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152 if (index.GetMainDicomTags(tags, *it, ResourceType_Series, ResourceType_Series)) |
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153 { |
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154 const DicomValue* value = tags.TestAndGetValue(DICOM_TAG_MODALITY); |
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155 |
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156 if (value != NULL && |
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157 !value->IsNull() && |
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158 !value->IsBinary()) |
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159 { |
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160 values.insert(value->GetContent()); |
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161 } |
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162 } |
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163 } |
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164 |
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165 StoreSetOfStrings(result, DICOM_TAG_MODALITIES_IN_STUDY, values); |
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166 } |
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167 |
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168 if (!query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) && |
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169 !query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY)) |
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170 { |
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171 return; |
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172 } |
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173 |
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174 std::list<std::string> instances; |
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175 GetChildren(instances, index, series); |
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176 |
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177 if (query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES)) |
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178 { |
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179 result.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES, |
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180 boost::lexical_cast<std::string>(instances.size()), false); |
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181 } |
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182 |
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183 if (query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY)) |
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184 { |
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185 std::set<std::string> values; |
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186 |
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187 for (std::list<std::string>::const_iterator |
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188 it = instances.begin(); it != instances.end(); ++it) |
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189 { |
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190 std::string value; |
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191 if (context.LookupOrReconstructMetadata(value, *it, ResourceType_Instance, MetadataType_Instance_SopClassUid)) |
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192 { |
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193 values.insert(value); |
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194 } |
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195 } |
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196 |
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197 StoreSetOfStrings(result, DICOM_TAG_SOP_CLASSES_IN_STUDY, values); |
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198 } |
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199 } |
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200 |
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201 |
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202 static void ComputeSeriesCounters(DicomMap& result, |
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203 ServerIndex& index, |
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204 const std::string& series, |
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205 const DicomMap& query) |
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206 { |
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207 std::list<std::string> instances; |
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208 index.GetChildren(instances, series); |
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209 |
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210 if (query.HasTag(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES)) |
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211 { |
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212 result.SetValue(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES, |
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213 boost::lexical_cast<std::string>(instances.size()), false); |
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214 } |
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215 } |
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216 |
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217 |
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218 static DicomMap* ComputeCounters(ServerContext& context, |
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219 const std::string& instanceId, |
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220 ResourceType level, |
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221 const DicomMap& query) |
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222 { |
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223 switch (level) |
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224 { |
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225 case ResourceType_Patient: |
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226 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) && |
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227 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) && |
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228 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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229 { |
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230 return NULL; |
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231 } |
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232 |
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233 break; |
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234 |
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235 case ResourceType_Study: |
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236 if (!query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) && |
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237 !query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) && |
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238 !query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY) && |
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239 !query.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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240 { |
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241 return NULL; |
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242 } |
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243 |
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244 break; |
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245 |
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246 case ResourceType_Series: |
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247 if (!query.HasTag(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES)) |
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248 { |
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249 return NULL; |
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250 } |
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251 |
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252 break; |
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253 |
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254 default: |
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255 return NULL; |
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256 } |
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257 |
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258 std::string parent; |
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259 if (!context.GetIndex().LookupParent(parent, instanceId, level)) |
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260 { |
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261 throw OrthancException(ErrorCode_UnknownResource); // The resource was deleted in between |
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262 } |
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263 |
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264 std::unique_ptr<DicomMap> result(new DicomMap); |
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265 |
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266 switch (level) |
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267 { |
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268 case ResourceType_Patient: |
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269 ComputePatientCounters(*result, context.GetIndex(), parent, query); |
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270 break; |
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271 |
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272 case ResourceType_Study: |
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273 ComputeStudyCounters(*result, context, parent, query); |
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274 break; |
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275 |
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276 case ResourceType_Series: |
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277 ComputeSeriesCounters(*result, context.GetIndex(), parent, query); |
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278 break; |
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279 |
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280 default: |
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281 throw OrthancException(ErrorCode_InternalError); |
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282 } |
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283 |
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284 return result.release(); |
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285 } |
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286 |
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287 |
608 | 288 static void AddAnswer(DicomFindAnswers& answers, |
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289 const DicomMap& mainDicomTags, |
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290 const Json::Value* dicomAsJson, |
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291 const DicomArray& query, |
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292 const std::list<DicomTag>& sequencesToReturn, |
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293 const DicomMap* counters, |
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294 const std::string& defaultPrivateCreator, |
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295 const std::map<uint16_t, std::string>& privateCreators, |
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296 const std::string& retrieveAet) |
608 | 297 { |
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298 DicomMap match; |
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299 |
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300 if (dicomAsJson != NULL) |
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301 { |
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302 match.FromDicomAsJson(*dicomAsJson); |
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303 } |
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304 else |
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305 { |
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306 match.Assign(mainDicomTags); |
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307 } |
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308 |
608 | 309 DicomMap result; |
310 | |
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311 /** |
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312 * Add the mandatory "Retrieve AE Title (0008,0054)" tag, which was missing in Orthanc <= 1.7.2. |
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313 * http://dicom.nema.org/medical/dicom/current/output/html/part04.html#sect_C.4.1.1.3.2 |
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314 * https://groups.google.com/g/orthanc-users/c/-7zNTKR_PMU/m/kfjwzEVNAgAJ |
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315 **/ |
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316 result.SetValue(DICOM_TAG_RETRIEVE_AE_TITLE, retrieveAet, false /* not binary */); |
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317 |
608 | 318 for (size_t i = 0; i < query.GetSize(); i++) |
319 { | |
1346 | 320 if (query.GetElement(i).GetTag() == DICOM_TAG_QUERY_RETRIEVE_LEVEL) |
321 { | |
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322 // Fix issue 30 on Google Code (QR response missing "Query/Retrieve Level" (008,0052)) |
1346 | 323 result.SetValue(query.GetElement(i).GetTag(), query.GetElement(i).GetValue()); |
324 } | |
325 else if (query.GetElement(i).GetTag() == DICOM_TAG_SPECIFIC_CHARACTER_SET) | |
326 { | |
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327 // Do not include the encoding, this is handled by class ParsedDicomFile |
1346 | 328 } |
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329 else |
608 | 330 { |
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331 const DicomTag& tag = query.GetElement(i).GetTag(); |
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332 const DicomValue* value = match.TestAndGetValue(tag); |
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333 |
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334 if (value != NULL && |
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335 !value->IsNull() && |
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336 !value->IsBinary()) |
608 | 337 { |
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338 result.SetValue(tag, value->GetContent(), false); |
608 | 339 } |
722 | 340 else |
341 { | |
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342 result.SetValue(tag, "", false); |
722 | 343 } |
608 | 344 } |
345 } | |
346 | |
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Support of optional tags for counting resources in C-Find
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|
347 if (counters != NULL) |
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Support of optional tags for counting resources in C-Find
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348 { |
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Support of optional tags for counting resources in C-Find
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|
349 DicomArray tmp(*counters); |
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Support of optional tags for counting resources in C-Find
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350 for (size_t i = 0; i < tmp.GetSize(); i++) |
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Support of optional tags for counting resources in C-Find
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|
351 { |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
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diff
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|
352 result.SetValue(tmp.GetElement(i).GetTag(), tmp.GetElement(i).GetValue().GetContent(), false); |
1898
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Support of optional tags for counting resources in C-Find
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|
353 } |
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Support of optional tags for counting resources in C-Find
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|
354 } |
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Support of optional tags for counting resources in C-Find
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355 |
1859
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C-FIND SCP will return tags with sequence value representation
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356 if (result.GetSize() == 0 && |
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C-FIND SCP will return tags with sequence value representation
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|
357 sequencesToReturn.empty()) |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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358 { |
4287
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using CLOG in Orthanc DICOM handlers
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359 CLOG(WARNING, DICOM) << "The C-FIND request does not return any DICOM tag"; |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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changeset
|
360 } |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
3012
diff
changeset
|
361 else if (sequencesToReturn.empty()) |
1859
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C-FIND SCP will return tags with sequence value representation
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362 { |
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C-FIND SCP will return tags with sequence value representation
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363 answers.Add(result); |
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C-FIND SCP will return tags with sequence value representation
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364 } |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
3012
diff
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|
365 else if (dicomAsJson == NULL) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
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diff
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|
366 { |
4287
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using CLOG in Orthanc DICOM handlers
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367 CLOG(WARNING, DICOM) << "C-FIND query requesting a sequence, but reading JSON from disk is disabled"; |
3015
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On C-FIND, avoid accessing the storage area whenever possible
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368 answers.Add(result); |
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On C-FIND, avoid accessing the storage area whenever possible
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diff
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|
369 } |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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370 else |
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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changeset
|
371 { |
4007
884b55ce01f6
Private tags returned by C-FIND SCP
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3712
diff
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372 ParsedDicomFile dicom(result, GetDefaultDicomEncoding(), |
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4020
diff
changeset
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373 true /* be permissive, cf. issue #136 */, defaultPrivateCreator, privateCreators); |
1859
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C-FIND SCP will return tags with sequence value representation
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diff
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374 |
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C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
375 for (std::list<DicomTag>::const_iterator tag = sequencesToReturn.begin(); |
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C-FIND SCP will return tags with sequence value representation
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parents:
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376 tag != sequencesToReturn.end(); ++tag) |
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C-FIND SCP will return tags with sequence value representation
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|
377 { |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
378 assert(dicomAsJson != NULL); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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3005
diff
changeset
|
379 const Json::Value& source = (*dicomAsJson) [tag->Format()]; |
1859
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C-FIND SCP will return tags with sequence value representation
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diff
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380 |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
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diff
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381 if (source.type() == Json::objectValue && |
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C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
382 source.isMember("Type") && |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
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diff
changeset
|
383 source.isMember("Value") && |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
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diff
changeset
|
384 source["Type"].asString() == "Sequence" && |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
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diff
changeset
|
385 source["Value"].type() == Json::arrayValue) |
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C-FIND SCP will return tags with sequence value representation
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parents:
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diff
changeset
|
386 { |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
387 Json::Value content = Json::arrayValue; |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
388 |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
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diff
changeset
|
389 for (Json::Value::ArrayIndex i = 0; i < source["Value"].size(); i++) |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
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diff
changeset
|
390 { |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
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diff
changeset
|
391 Json::Value item; |
4055
9214e3a7b0a2
moving FromDcmtkTests.cpp from OrthancServer to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4045
diff
changeset
|
392 Toolbox::SimplifyDicomAsJson(item, source["Value"][i], DicomToJsonFormat_Short); |
1859
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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diff
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|
393 content.append(item); |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
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diff
changeset
|
394 } |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
1856
diff
changeset
|
395 |
4011
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
396 if (tag->IsPrivate()) |
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
397 { |
4028 | 398 std::map<uint16_t, std::string>::const_iterator found = privateCreators.find(tag->GetGroup()); |
399 | |
400 if (found != privateCreators.end()) | |
4020
320cde762fd9
collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
401 { |
4028 | 402 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent, found->second.c_str()); |
4020
320cde762fd9
collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
403 } |
320cde762fd9
collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
404 else |
320cde762fd9
collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
405 { |
320cde762fd9
collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
406 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent, defaultPrivateCreator); |
320cde762fd9
collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
407 } |
4011
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
408 } |
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
409 else |
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
410 { |
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
411 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent, "" /* no private creator */); |
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
412 } |
1859
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
1856
diff
changeset
|
413 } |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1856
diff
changeset
|
414 } |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1856
diff
changeset
|
415 |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
1856
diff
changeset
|
416 answers.Add(dicom); |
1331
77e129ba64e4
Prevent freeze on C-FIND if no DICOM tag is to be returned
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
417 } |
608 | 418 } |
419 | |
420 | |
1851
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
421 |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
422 bool OrthancFindRequestHandler::FilterQueryTag(std::string& value /* can be modified */, |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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parents:
1800
diff
changeset
|
423 ResourceType level, |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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1800
diff
changeset
|
424 const DicomTag& tag, |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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parents:
1800
diff
changeset
|
425 ModalityManufacturer manufacturer) |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
426 { |
2335 | 427 // Whatever the manufacturer, remove the GenericGroupLength tags |
428 // http://dicom.nema.org/medical/dicom/current/output/chtml/part05/sect_7.2.html | |
4476
c1f36fd13730
migrate remaining links to issues in bitbucket to mercurial server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
429 // https://bugs.orthanc-server.com/show_bug.cgi?id=31 |
2434
63194107e61b
fix issue 31 for good: removing group length correctly
amazy
parents:
2382
diff
changeset
|
430 if (tag.GetElement() == 0x0000) |
2317
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
431 { |
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
432 return false; |
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
433 } |
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
434 |
1853
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
435 switch (manufacturer) |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
436 { |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
437 case ModalityManufacturer_Vitrea: |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
438 // Following Denis Nesterov's mail on 2015-11-30 |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
439 if (tag == DicomTag(0x5653, 0x0010)) // "PrivateCreator = Vital Images SW 3.4" |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
440 { |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
441 return false; |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
442 } |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
443 |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
444 break; |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
445 |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
446 default: |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
447 break; |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
448 } |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1851
diff
changeset
|
449 |
1851
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
450 return true; |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
451 } |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
452 |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
453 |
1888
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1859
diff
changeset
|
454 bool OrthancFindRequestHandler::ApplyLuaFilter(DicomMap& target, |
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1859
diff
changeset
|
455 const DicomMap& source, |
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1859
diff
changeset
|
456 const std::string& remoteIp, |
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1859
diff
changeset
|
457 const std::string& remoteAet, |
2827
d4fd4614f275
IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2617
diff
changeset
|
458 const std::string& calledAet, |
d4fd4614f275
IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2617
diff
changeset
|
459 ModalityManufacturer manufacturer) |
1888
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1859
diff
changeset
|
460 { |
2221
e7beca979562
fix Windows build due to overwriting a macro
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
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461 static const char* LUA_CALLBACK = "IncomingFindRequestFilter"; |
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462 |
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463 LuaScripting::Lock lock(context_.GetLuaScripting()); |
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464 |
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465 if (!lock.GetLua().IsExistingFunction(LUA_CALLBACK)) |
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466 { |
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467 return false; |
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468 } |
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469 else |
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470 { |
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471 Json::Value origin; |
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472 FormatOrigin(origin, remoteIp, remoteAet, calledAet, manufacturer); |
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473 |
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474 LuaFunctionCall call(lock.GetLua(), LUA_CALLBACK); |
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475 call.PushDicom(source); |
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476 call.PushJson(origin); |
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477 call.ExecuteToDicom(target); |
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478 |
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479 return true; |
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480 } |
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481 } |
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482 |
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483 |
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484 OrthancFindRequestHandler::OrthancFindRequestHandler(ServerContext& context) : |
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485 context_(context), |
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486 maxResults_(0), |
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487 maxInstances_(0) |
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488 { |
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489 } |
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490 |
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491 |
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492 class OrthancFindRequestHandler::LookupVisitor : public ServerContext::ILookupVisitor |
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493 { |
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494 private: |
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495 DicomFindAnswers& answers_; |
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496 ServerContext& context_; |
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497 ResourceType level_; |
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498 const DicomMap& query_; |
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499 DicomArray queryAsArray_; |
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500 const std::list<DicomTag>& sequencesToReturn_; |
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501 std::string defaultPrivateCreator_; // the private creator to use if the group is not defined in the query itself |
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502 const std::map<uint16_t, std::string>& privateCreators_; // the private creators defined in the query itself |
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503 std::string retrieveAet_; |
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504 |
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505 public: |
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506 LookupVisitor(DicomFindAnswers& answers, |
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507 ServerContext& context, |
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508 ResourceType level, |
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509 const DicomMap& query, |
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510 const std::list<DicomTag>& sequencesToReturn, |
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511 const std::map<uint16_t, std::string>& privateCreators) : |
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512 answers_(answers), |
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513 context_(context), |
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514 level_(level), |
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515 query_(query), |
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516 queryAsArray_(query), |
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517 sequencesToReturn_(sequencesToReturn), |
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518 privateCreators_(privateCreators) |
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519 { |
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520 answers_.SetComplete(false); |
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521 |
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522 { |
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523 OrthancConfiguration::ReaderLock lock; |
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524 defaultPrivateCreator_ = lock.GetConfiguration().GetDefaultPrivateCreator(); |
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525 retrieveAet_ = lock.GetConfiguration().GetOrthancAET(); |
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526 } |
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527 } |
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528 |
4204 | 529 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE |
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530 { |
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531 // Ask the "DICOM-as-JSON" attachment only if sequences are to |
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532 // be returned OR if "query_" contains non-main DICOM tags! |
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533 |
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534 DicomMap withoutSpecialTags; |
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535 withoutSpecialTags.Assign(query_); |
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536 |
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537 // Check out "ComputeCounters()" |
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538 withoutSpecialTags.Remove(DICOM_TAG_MODALITIES_IN_STUDY); |
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539 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES); |
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540 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES); |
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541 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES); |
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542 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES); |
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543 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES); |
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544 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES); |
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545 withoutSpecialTags.Remove(DICOM_TAG_SOP_CLASSES_IN_STUDY); |
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546 |
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547 // Check out "AddAnswer()" |
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548 withoutSpecialTags.Remove(DICOM_TAG_SPECIFIC_CHARACTER_SET); |
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549 withoutSpecialTags.Remove(DICOM_TAG_QUERY_RETRIEVE_LEVEL); |
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550 |
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551 return (!sequencesToReturn_.empty() || |
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552 !withoutSpecialTags.HasOnlyMainDicomTags()); |
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553 } |
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554 |
4204 | 555 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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556 { |
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557 answers_.SetComplete(true); |
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558 } |
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559 |
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560 virtual void Visit(const std::string& publicId, |
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561 const std::string& instanceId, |
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562 const DicomMap& mainDicomTags, |
4204 | 563 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE |
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564 { |
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565 std::unique_ptr<DicomMap> counters(ComputeCounters(context_, instanceId, level_, query_)); |
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566 |
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567 AddAnswer(answers_, mainDicomTags, dicomAsJson, queryAsArray_, sequencesToReturn_, |
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568 counters.get(), defaultPrivateCreator_, privateCreators_, retrieveAet_); |
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569 } |
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570 }; |
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571 |
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572 |
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573 void OrthancFindRequestHandler::Handle(DicomFindAnswers& answers, |
665 | 574 const DicomMap& input, |
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575 const std::list<DicomTag>& sequencesToReturn, |
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576 const std::string& remoteIp, |
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577 const std::string& remoteAet, |
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578 const std::string& calledAet, |
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579 ModalityManufacturer manufacturer) |
565
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580 { |
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581 MetricsRegistry::Timer timer(context_.GetMetricsRegistry(), "orthanc_find_scp_duration_ms"); |
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582 |
4482
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583 |
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584 /** |
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585 * Deal with global configuration |
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586 **/ |
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587 |
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588 bool caseSensitivePN; |
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589 |
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590 { |
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591 OrthancConfiguration::ReaderLock lock; |
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592 caseSensitivePN = lock.GetConfiguration().GetBooleanParameter("CaseSensitivePN", false); |
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593 |
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594 RemoteModalityParameters remote; |
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595 if (!lock.GetConfiguration().LookupDicomModalityUsingAETitle(remote, remoteAet)) |
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596 { |
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597 if (lock.GetConfiguration().GetBooleanParameter("DicomAlwaysAllowFind", false)) |
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598 { |
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599 CLOG(INFO, DICOM) << "C-FIND: Allowing SCU request from unknown modality with AET: " << remoteAet; |
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600 } |
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601 else |
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602 { |
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603 // This should never happen, given the test at bottom of |
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604 // "OrthancApplicationEntityFilter::IsAllowedRequest()" |
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605 throw OrthancException(ErrorCode_InexistentItem, |
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606 "C-FIND: Rejecting SCU request from unknown modality with AET: " + remoteAet); |
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607 } |
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608 } |
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609 } |
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610 |
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611 |
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612 |
565
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613 /** |
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614 * Possibly apply the user-supplied Lua filter. |
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615 **/ |
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616 |
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617 DicomMap lua; |
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618 const DicomMap* filteredInput = &input; |
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619 |
2827
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620 if (ApplyLuaFilter(lua, input, remoteIp, remoteAet, calledAet, manufacturer)) |
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621 { |
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622 filteredInput = &lua; |
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623 } |
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624 |
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625 |
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626 /** |
565
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627 * Retrieve the query level. |
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628 **/ |
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629 |
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630 assert(filteredInput != NULL); |
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631 const DicomValue* levelTmp = filteredInput->TestAndGetValue(DICOM_TAG_QUERY_RETRIEVE_LEVEL); |
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632 if (levelTmp == NULL || |
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633 levelTmp->IsNull() || |
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634 levelTmp->IsBinary()) |
565
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635 { |
2955 | 636 throw OrthancException(ErrorCode_BadRequest, |
637 "C-FIND request without the tag 0008,0052 (QueryRetrieveLevel)"); | |
565
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638 } |
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639 |
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640 ResourceType level = StringToResourceType(levelTmp->GetContent().c_str()); |
565
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641 |
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642 if (level != ResourceType_Patient && |
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643 level != ResourceType_Study && |
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644 level != ResourceType_Series && |
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645 level != ResourceType_Instance) |
565
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646 { |
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647 throw OrthancException(ErrorCode_NotImplemented); |
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648 } |
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649 |
665 | 650 |
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651 DicomArray query(*filteredInput); |
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652 CLOG(INFO, DICOM) << "DICOM C-Find request at level: " << EnumerationToString(level); |
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653 |
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654 for (size_t i = 0; i < query.GetSize(); i++) |
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655 { |
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656 if (!query.GetElement(i).GetValue().IsNull()) |
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657 { |
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658 CLOG(INFO, DICOM) << " (" << query.GetElement(i).GetTag().Format() |
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659 << ") " << FromDcmtkBridge::GetTagName(query.GetElement(i)) |
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660 << " = " << context_.GetDeidentifiedContent(query.GetElement(i)); |
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661 } |
565
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662 } |
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663 |
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664 for (std::list<DicomTag>::const_iterator it = sequencesToReturn.begin(); |
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665 it != sequencesToReturn.end(); ++it) |
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666 { |
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667 CLOG(INFO, DICOM) << " (" << it->Format() |
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668 << ") " << FromDcmtkBridge::GetTagName(*it, "") |
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669 << " : sequence tag whose content will be copied"; |
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670 } |
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671 |
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672 // collect the private creators from the query itself |
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673 std::map<uint16_t, std::string> privateCreators; |
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674 for (size_t i = 0; i < query.GetSize(); i++) |
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675 { |
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676 const DicomElement& element = query.GetElement(i); |
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677 if (element.GetTag().IsPrivate() && element.GetTag().GetElement() == 0x10) |
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678 { |
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679 privateCreators[element.GetTag().GetGroup()] = element.GetValue().GetContent(); |
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680 } |
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681 } |
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682 |
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683 /** |
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684 * Build up the query object. |
608 | 685 **/ |
686 | |
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687 DatabaseLookup lookup; |
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688 |
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689 for (size_t i = 0; i < query.GetSize(); i++) |
714
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690 { |
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691 const DicomElement& element = query.GetElement(i); |
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692 const DicomTag tag = element.GetTag(); |
714
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693 |
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694 if (element.GetValue().IsNull() || |
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695 tag == DICOM_TAG_QUERY_RETRIEVE_LEVEL || |
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696 tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
714
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697 { |
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698 continue; |
714
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699 } |
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700 |
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701 std::string value = element.GetValue().GetContent(); |
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702 if (value.size() == 0) |
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703 { |
3163
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Fix issue #90 (C-Find shall match missing tags to null/empty string)
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704 // An empty string corresponds to an universal constraint, so we ignore it |
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705 continue; |
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706 } |
611
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707 |
2256
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708 if (FilterQueryTag(value, level, tag, manufacturer)) |
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709 { |
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710 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(tag); |
1758 | 711 |
1851
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712 // DICOM specifies that searches must be case sensitive, except |
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713 // for tags with a PN value representation |
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714 bool sensitive = true; |
2007
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715 if (vr == ValueRepresentation_PersonName) |
1851
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716 { |
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717 sensitive = caseSensitivePN; |
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718 } |
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719 |
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720 lookup.AddDicomConstraint(tag, value, sensitive, true /* mandatory */); |
1851
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721 } |
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722 else |
1758 | 723 { |
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724 CLOG(INFO, DICOM) << "Because of a patch for the manufacturer of the remote modality, " |
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725 << "ignoring constraint on tag (" << tag.Format() << ") " |
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726 << FromDcmtkBridge::GetTagName(element); |
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727 } |
611
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diff
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|
728 } |
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|
729 |
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730 |
608 | 731 /** |
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732 * Run the query. |
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733 **/ |
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734 |
2876 | 735 size_t limit = (level == ResourceType_Instance) ? maxInstances_ : maxResults_; |
941
83489fddd8c5
Options to limit the number of results for an incoming C-FIND query
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parents:
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diff
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|
736 |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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737 |
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738 LookupVisitor visitor(answers, context_, level, *filteredInput, sequencesToReturn, privateCreators); |
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739 context_.Apply(visitor, lookup, level, 0 /* "since" is not relevant to C-FIND */, limit); |
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740 } |
2827
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IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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diff
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|
741 |
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|
742 |
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743 void OrthancFindRequestHandler::FormatOrigin(Json::Value& origin, |
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744 const std::string& remoteIp, |
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745 const std::string& remoteAet, |
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746 const std::string& calledAet, |
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747 ModalityManufacturer manufacturer) |
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748 { |
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749 origin = Json::objectValue; |
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|
750 origin["RemoteIp"] = remoteIp; |
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|
751 origin["RemoteAet"] = remoteAet; |
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|
752 origin["CalledAet"] = calledAet; |
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diff
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|
753 origin["Manufacturer"] = EnumerationToString(manufacturer); |
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|
754 } |
565
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|
755 } |