annotate OrthancServer/ServerIndex.cpp @ 1261:ef74281b2ffa

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 08 Jan 2015 15:45:20 +0100
parents 40725595aaf0
children cf5bd2dc3b7a
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege,
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4 * Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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32
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33 #include "PrecompiledHeadersServer.h"
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34 #include "ServerIndex.h"
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35
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36 #ifndef NOMINMAX
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37 #define NOMINMAX
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38 #endif
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39
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40 #include "ServerIndexChange.h"
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41 #include "EmbeddedResources.h"
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42 #include "OrthancInitialization.h"
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43 #include "../Core/Toolbox.h"
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44 #include "../Core/Uuid.h"
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45 #include "../Core/DicomFormat/DicomArray.h"
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46 #include "FromDcmtkBridge.h"
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47 #include "ServerContext.h"
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49 #include <boost/lexical_cast.hpp>
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50 #include <stdio.h>
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51 #include <glog/logging.h>
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52
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53 static const uint64_t MEGA_BYTES = 1024 * 1024;
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54
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55 namespace Orthanc
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56 {
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57 namespace Internals
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58 {
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59 class ServerIndexListener : public IServerIndexListener
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60 {
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61 private:
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62 struct FileToRemove
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63 {
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64 private:
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65 std::string uuid_;
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66 FileContentType type_;
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67
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68 public:
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69 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()),
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70 type_(info.GetContentType())
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71 {
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72 }
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74 const std::string& GetUuid() const
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75 {
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76 return uuid_;
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77 }
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79 FileContentType GetContentType() const
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80 {
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81 return type_;
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82 }
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83 };
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84
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85 ServerContext& context_;
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86 bool hasRemainingLevel_;
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87 ResourceType remainingType_;
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88 std::string remainingPublicId_;
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89 std::list<FileToRemove> pendingFilesToRemove_;
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90 std::list<ServerIndexChange> pendingChanges_;
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91 uint64_t sizeOfFilesToRemove_;
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92 bool insideTransaction_;
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93
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94 void Reset()
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95 {
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96 sizeOfFilesToRemove_ = 0;
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97 hasRemainingLevel_ = false;
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98 pendingFilesToRemove_.clear();
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99 pendingChanges_.clear();
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100 }
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101
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102 public:
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103 ServerIndexListener(ServerContext& context) : context_(context),
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104 insideTransaction_(false)
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105 {
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106 Reset();
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107 assert(ResourceType_Patient < ResourceType_Study &&
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108 ResourceType_Study < ResourceType_Series &&
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109 ResourceType_Series < ResourceType_Instance);
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110 }
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111
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112 void StartTransaction()
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113 {
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114 Reset();
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115 insideTransaction_ = true;
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116 }
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117
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118 void EndTransaction()
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119 {
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120 insideTransaction_ = false;
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121 }
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122
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123 uint64_t GetSizeOfFilesToRemove()
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124 {
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125 return sizeOfFilesToRemove_;
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126 }
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127
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128 void CommitFilesToRemove()
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129 {
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130 for (std::list<FileToRemove>::const_iterator
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131 it = pendingFilesToRemove_.begin();
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132 it != pendingFilesToRemove_.end(); ++it)
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133 {
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134 context_.RemoveFile(it->GetUuid(), it->GetContentType());
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135 }
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136 }
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137
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138 void CommitChanges()
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139 {
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140 for (std::list<ServerIndexChange>::const_iterator
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141 it = pendingChanges_.begin();
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142 it != pendingChanges_.end(); it++)
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143 {
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144 context_.SignalChange(*it);
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145 }
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146 }
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147
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148 virtual void SignalRemainingAncestor(ResourceType parentType,
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149 const std::string& publicId)
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150 {
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151 LOG(INFO) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")";
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152
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153 if (hasRemainingLevel_)
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154 {
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155 if (parentType < remainingType_)
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156 {
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157 remainingType_ = parentType;
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158 remainingPublicId_ = publicId;
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159 }
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160 }
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161 else
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162 {
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163 hasRemainingLevel_ = true;
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164 remainingType_ = parentType;
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165 remainingPublicId_ = publicId;
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166 }
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167 }
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168
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169 virtual void SignalFileDeleted(const FileInfo& info)
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170 {
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171 assert(Toolbox::IsUuid(info.GetUuid()));
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172 pendingFilesToRemove_.push_back(FileToRemove(info));
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173 sizeOfFilesToRemove_ += info.GetCompressedSize();
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174 }
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175
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176 virtual void SignalChange(const ServerIndexChange& change)
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177 {
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178 LOG(INFO) << "Change related to resource " << change.GetPublicId() << " of type "
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179 << EnumerationToString(change.GetResourceType()) << ": "
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180 << EnumerationToString(change.GetChangeType());
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181
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182 if (insideTransaction_)
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183 {
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184 pendingChanges_.push_back(change);
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185 }
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186 else
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187 {
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188 context_.SignalChange(change);
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189 }
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190 }
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191
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192 bool HasRemainingLevel() const
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193 {
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194 return hasRemainingLevel_;
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195 }
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196
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197 ResourceType GetRemainingType() const
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198 {
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199 assert(HasRemainingLevel());
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200 return remainingType_;
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201 }
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202
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203 const std::string& GetRemainingPublicId() const
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204 {
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205 assert(HasRemainingLevel());
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206 return remainingPublicId_;
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207 }
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208 };
0
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209 }
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210
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211
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212 class ServerIndex::Transaction
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213 {
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214 private:
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215 ServerIndex& index_;
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216 std::auto_ptr<SQLite::ITransaction> transaction_;
278
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217 bool isCommitted_;
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218
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219 public:
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220 Transaction(ServerIndex& index) :
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221 index_(index),
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222 isCommitted_(false)
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223 {
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224 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize());
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225
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226 transaction_.reset(index_.db_.StartTransaction());
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227 transaction_->Begin();
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228
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229 index_.listener_->StartTransaction();
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230 }
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231
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232 ~Transaction()
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233 {
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234 index_.listener_->EndTransaction();
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235 }
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236
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237 void Commit(uint64_t sizeOfAddedFiles)
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238 {
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239 if (!isCommitted_)
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240 {
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241 transaction_->Commit();
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242
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243 // We can remove the files once the SQLite transaction has
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244 // been successfully committed. Some files might have to be
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245 // deleted because of recycling.
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246 index_.listener_->CommitFilesToRemove();
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247
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248 index_.currentStorageSize_ += sizeOfAddedFiles;
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249
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250 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove());
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251 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove();
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252
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253 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize());
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254
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255 // Send all the pending changes to the Orthanc plugins
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256 index_.listener_->CommitChanges();
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257
278
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258 isCommitted_ = true;
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259 }
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260 }
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261 };
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262
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263
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264 class ServerIndex::UnstableResourcePayload
511
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265 {
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266 private:
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267 ResourceType type_;
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268 std::string publicId_;
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269 boost::posix_time::ptime time_;
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270
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271 public:
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272 UnstableResourcePayload() : type_(ResourceType_Instance)
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273 {
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274 }
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275
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276 UnstableResourcePayload(Orthanc::ResourceType type,
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277 const std::string& publicId) :
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278 type_(type),
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279 publicId_(publicId)
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280 {
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281 time_ = boost::posix_time::second_clock::local_time();
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282 }
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283
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284 unsigned int GetAge() const
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285 {
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286 return (boost::posix_time::second_clock::local_time() - time_).total_seconds();
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287 }
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288
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289 ResourceType GetResourceType() const
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290 {
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291 return type_;
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292 }
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293
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294 const std::string& GetPublicId() const
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295 {
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296 return publicId_;
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297 }
511
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298 };
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299
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300
212
f276b175dcaf delete resources
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diff changeset
301 bool ServerIndex::DeleteResource(Json::Value& target,
0
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302 const std::string& uuid,
202
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303 ResourceType expectedType)
0
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304 {
206
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305 boost::mutex::scoped_lock lock(mutex_);
201
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306
278
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307 Transaction t(*this);
201
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308
202
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309 int64_t id;
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310 ResourceType type;
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311 if (!db_.LookupResource(uuid, id, type) ||
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312 expectedType != type)
0
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313 {
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314 return false;
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315 }
202
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316
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317 db_.DeleteResource(id);
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318
202
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319 if (listener_->HasRemainingLevel())
0
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320 {
202
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321 ResourceType type = listener_->GetRemainingType();
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322 const std::string& uuid = listener_->GetRemainingPublicId();
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323
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324 target["RemainingAncestor"] = Json::Value(Json::objectValue);
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325 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid);
434
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326 target["RemainingAncestor"]["Type"] = EnumerationToString(type);
0
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327 target["RemainingAncestor"]["ID"] = uuid;
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328 }
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329 else
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330 {
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331 target["RemainingAncestor"] = Json::nullValue;
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332 }
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333
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334 t.Commit(0);
264
5b8e8b74bc8b remove files only after the sqlite transaction has succeeded
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335
0
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336 return true;
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337 }
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338
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339
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diff changeset
340 void ServerIndex::FlushThread(ServerIndex* that)
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341 {
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342 // By default, wait for 10 seconds before flushing
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343 unsigned int sleep = 10;
511
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344
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345 try
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346 {
744
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347 boost::mutex::scoped_lock lock(that->mutex_);
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348 std::string sleepString;
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349
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350 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) &&
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351 Toolbox::IsInteger(sleepString))
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352 {
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353 sleep = boost::lexical_cast<unsigned int>(sleepString);
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354 }
511
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355 }
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diff changeset
356 catch (boost::bad_lexical_cast&)
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diff changeset
357 {
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358 }
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diff changeset
359
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diff changeset
360 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")";
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parents: 205
diff changeset
361
511
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diff changeset
362 unsigned int count = 0;
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diff changeset
363
3b735fdf320b monitoring of stable patients/studies/series
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parents: 440
diff changeset
364 while (!that->done_)
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parents: 205
diff changeset
365 {
511
3b735fdf320b monitoring of stable patients/studies/series
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diff changeset
366 boost::this_thread::sleep(boost::posix_time::seconds(1));
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diff changeset
367 count++;
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diff changeset
368 if (count < sleep)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
369 {
3b735fdf320b monitoring of stable patients/studies/series
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parents: 440
diff changeset
370 continue;
3b735fdf320b monitoring of stable patients/studies/series
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parents: 440
diff changeset
371 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
372
3b735fdf320b monitoring of stable patients/studies/series
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parents: 440
diff changeset
373 boost::mutex::scoped_lock lock(that->mutex_);
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32fcc5dc7562 abstraction
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parents: 1246
diff changeset
374 that->db_.FlushToDisk();
511
3b735fdf320b monitoring of stable patients/studies/series
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parents: 440
diff changeset
375 count = 0;
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4453a010d0db flush to disk thread
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parents: 205
diff changeset
376 }
511
3b735fdf320b monitoring of stable patients/studies/series
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parents: 440
diff changeset
377
3b735fdf320b monitoring of stable patients/studies/series
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diff changeset
378 LOG(INFO) << "Stopping the database flushing thread";
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parents: 205
diff changeset
379 }
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parents: 205
diff changeset
380
4453a010d0db flush to disk thread
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parents: 205
diff changeset
381
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diff changeset
382 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db,
433
aa50783f9550 cardiopet
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parents: 432
diff changeset
383 int64_t series,
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
384 const DicomMap& dicomSummary)
aa50783f9550 cardiopet
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parents: 432
diff changeset
385 {
aa50783f9550 cardiopet
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parents: 432
diff changeset
386 try
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
387 {
656
08eca5d86aad fixes to cppcheck
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parents: 646
diff changeset
388 const DicomValue* value;
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
389 const DicomValue* value2;
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
390
433
aa50783f9550 cardiopet
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parents: 432
diff changeset
391 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL &&
aa50783f9550 cardiopet
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parents: 432
diff changeset
392 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL)
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
393 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
394 // Patch for series with temporal positions thanks to Will Ryder
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
395 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->AsString());
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
396 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->AsString());
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
397 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions);
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
398 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected);
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
399 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
400
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
401 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL &&
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
402 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL)
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
403 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
404 // Support of Cardio-PET images
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
405 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->AsString());
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
406 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->AsString());
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
407 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices);
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
408 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected);
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
409 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
410
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
411 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL)
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
412 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
413 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->AsString());
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
414 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
415 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
416 catch (boost::bad_lexical_cast)
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
417 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
418 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
419 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
420
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
421
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
422
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
423
1238
6c07108ff1e2 cleaning
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parents: 1237
diff changeset
424 bool ServerIndex::GetMetadataAsInteger(int64_t& result,
1237
0f3716b88af7 cleaning
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parents: 1236
diff changeset
425 int64_t id,
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
426 MetadataType type)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
427 {
1238
6c07108ff1e2 cleaning
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parents: 1237
diff changeset
428 std::string s;
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32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
429 if (!db_.LookupMetadata(s, id, type))
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
430 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
431 return false;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
432 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
433
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
434 try
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
435 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
436 result = boost::lexical_cast<int64_t>(s);
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
437 return true;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
438 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
439 catch (boost::bad_lexical_cast&)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
440 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
441 return false;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
442 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
443 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
444
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
445
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
446
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
447 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
448 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
449 std::string oldValue;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
450
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
451 if (db_.LookupGlobalProperty(oldValue, property))
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
452 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
453 uint64_t oldNumber;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
454
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
455 try
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
456 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
457 oldNumber = boost::lexical_cast<uint64_t>(oldValue);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
458 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1));
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
459 return oldNumber + 1;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
460 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
461 catch (boost::bad_lexical_cast&)
0f3716b88af7 cleaning
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parents: 1236
diff changeset
462 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
463 throw OrthancException(ErrorCode_InternalError);
0f3716b88af7 cleaning
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parents: 1236
diff changeset
464 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
465 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
466 else
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
467 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
468 // Initialize the sequence at "1"
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
469 db_.SetGlobalProperty(property, "1");
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
470 return 1;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
471 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
472 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
473
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
474
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
475
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
476 ServerIndex::ServerIndex(ServerContext& context,
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
477 IDatabaseWrapper& db) :
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
478 done_(false),
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
479 db_(db),
269
f6fdf5abe751 recycling up and running
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parents: 268
diff changeset
480 maximumStorageSize_(0),
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
481 maximumPatients_(0)
186
f68c039b0571 preparing refactoring of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 180
diff changeset
482 {
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
483 listener_.reset(new Internals::ServerIndexListener(context));
1247
32fcc5dc7562 abstraction
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parents: 1246
diff changeset
484 db_.SetListener(*listener_);
180
626777d01dc4 use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 179
diff changeset
485
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
486 currentStorageSize_ = db_.GetTotalCompressedSize();
278
771f12042be9 more efficient determination of storage size for recycling
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parents: 273
diff changeset
487
269
f6fdf5abe751 recycling up and running
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parents: 268
diff changeset
488 // Initial recycling if the parameters have changed since the last
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
489 // execution of Orthanc
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
490 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
491
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
492 flushThread_ = boost::thread(FlushThread, this);
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
493 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this);
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
494 }
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
495
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
496
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
497 ServerIndex::~ServerIndex()
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
498 {
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
499 done_ = true;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
500
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
501 if (flushThread_.joinable())
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
502 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
503 flushThread_.join();
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
504 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
505
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
506 if (unstableResourcesMonitorThread_.joinable())
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
507 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
508 unstableResourcesMonitorThread_.join();
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
509 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
513 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata,
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
514 const DicomMap& dicomSummary,
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
515 const Attachments& attachments,
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
516 const std::string& remoteAet,
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
517 const MetadataMap& metadata)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
519 boost::mutex::scoped_lock lock(mutex_);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
521 instanceMetadata.clear();
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
522
178
5739b4d10a4b hashing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 147
diff changeset
523 DicomInstanceHasher hasher(dicomSummary);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525 try
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
526 {
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
527 Transaction t(*this);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
528
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
529 // Do nothing if the instance already exists
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
530 {
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
531 ResourceType type;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
532 int64_t tmp;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
533 if (db_.LookupResource(hasher.HashInstance(), tmp, type))
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
534 {
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
535 assert(type == ResourceType_Instance);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
536 db_.GetAllMetadata(instanceMetadata, tmp);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
537 return StoreStatus_AlreadyStored;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
538 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
539 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
540
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
541 // Ensure there is enough room in the storage for the new instance
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
542 uint64_t instanceSize = 0;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
543 for (Attachments::const_iterator it = attachments.begin();
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
544 it != attachments.end(); ++it)
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
545 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
546 instanceSize += it->GetCompressedSize();
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
547 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
548
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
549 Recycle(instanceSize, hasher.HashPatient());
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
550
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
551 // Create the instance
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
552 int64_t instance = db_.CreateResource(hasher.HashInstance(), ResourceType_Instance);
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
553
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
554 DicomMap dicom;
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
555 dicomSummary.ExtractInstanceInformation(dicom);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
556 db_.SetMainDicomTags(instance, dicom);
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
557
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
558 // Detect up to which level the patient/study/series/instance
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
559 // hierarchy must be created
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
560 int64_t patient = -1, study = -1, series = -1;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
561 bool isNewPatient = false;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
562 bool isNewStudy = false;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
563 bool isNewSeries = false;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
564
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
565 {
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
566 ResourceType dummy;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
567
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
568 if (db_.LookupResource(hasher.HashSeries(), series, dummy))
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
569 {
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
570 assert(dummy == ResourceType_Series);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
571 // The patient, the study and the series already exist
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
572
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
573 bool ok = (db_.LookupResource(hasher.HashPatient(), patient, dummy) &&
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
574 db_.LookupResource(hasher.HashStudy(), study, dummy));
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
575 assert(ok);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
576 }
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
577 else if (db_.LookupResource(hasher.HashStudy(), study, dummy))
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
578 {
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
579 assert(dummy == ResourceType_Study);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
580
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
581 // New series: The patient and the study already exist
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
582 isNewSeries = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
583
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32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
584 bool ok = db_.LookupResource(hasher.HashPatient(), patient, dummy);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
585 assert(ok);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
586 }
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32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
587 else if (db_.LookupResource(hasher.HashPatient(), patient, dummy))
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
588 {
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
589 assert(dummy == ResourceType_Patient);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
590
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
591 // New study and series: The patient already exist
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
592 isNewStudy = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
593 isNewSeries = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
594 }
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
595 else
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
596 {
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
597 // New patient, study and series: Nothing exists
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
598 isNewPatient = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
599 isNewStudy = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
600 isNewSeries = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
601 }
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
602 }
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
603
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
604 // Create the series if needed
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
605 if (isNewSeries)
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
606 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
607 series = db_.CreateResource(hasher.HashSeries(), ResourceType_Series);
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
608 dicomSummary.ExtractSeriesInformation(dicom);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
609 db_.SetMainDicomTags(series, dicom);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
610 }
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
611
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
612 // Create the study if needed
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
613 if (isNewStudy)
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
614 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
615 study = db_.CreateResource(hasher.HashStudy(), ResourceType_Study);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
616 dicomSummary.ExtractStudyInformation(dicom);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
617 db_.SetMainDicomTags(study, dicom);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
618 }
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
619
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
620 // Create the patient if needed
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
621 if (isNewPatient)
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
622 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
623 patient = db_.CreateResource(hasher.HashPatient(), ResourceType_Patient);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
624 dicomSummary.ExtractPatientInformation(dicom);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
625 db_.SetMainDicomTags(patient, dicom);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
626 }
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
627
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
628 // Create the parent-to-child links
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
629 db_.AttachChild(series, instance);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
630
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
631 if (isNewSeries)
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
632 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
633 db_.AttachChild(study, series);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
634 }
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
635
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
636 if (isNewStudy)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
637 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
638 db_.AttachChild(patient, study);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
639 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
640
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
641 // Sanity checks
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
642 assert(patient != -1);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
643 assert(study != -1);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
644 assert(series != -1);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
645 assert(instance != -1);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
646
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
647 // Attach the files to the newly created instance
232
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
648 for (Attachments::const_iterator it = attachments.begin();
656
08eca5d86aad fixes to cppcheck
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parents: 646
diff changeset
649 it != attachments.end(); ++it)
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
650 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
651 db_.AddAttachment(instance, *it);
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
652 }
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
653
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
654 // Attach the user-specified metadata
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
655 for (MetadataMap::const_iterator
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
656 it = metadata.begin(); it != metadata.end(); ++it)
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
657 {
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
658 switch (it->first.first)
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
659 {
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
660 case ResourceType_Patient:
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
661 db_.SetMetadata(patient, it->first.second, it->second);
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
662 break;
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
663
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
664 case ResourceType_Study:
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
665 db_.SetMetadata(study, it->first.second, it->second);
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
666 break;
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
667
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
668 case ResourceType_Series:
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
669 db_.SetMetadata(series, it->first.second, it->second);
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
670 break;
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
671
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
672 case ResourceType_Instance:
1247
32fcc5dc7562 abstraction
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parents: 1246
diff changeset
673 db_.SetMetadata(instance, it->first.second, it->second);
1006
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parents: 1004
diff changeset
674 instanceMetadata[it->first.second] = it->second;
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
675 break;
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
676
1006
649d47854314 proper handling of metadata in Store
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parents: 1004
diff changeset
677 default:
649d47854314 proper handling of metadata in Store
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parents: 1004
diff changeset
678 throw OrthancException(ErrorCode_ParameterOutOfRange);
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
679 }
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
680 }
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
681
1004
a226e0959d8b DicomInstanceToStore
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parents: 1002
diff changeset
682 // Attach the auto-computed metadata for the patient/study/series levels
432
2b09d4ee86c6 refactoring
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parents: 431
diff changeset
683 std::string now = Toolbox::GetNowIsoString();
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parents: 1246
diff changeset
684 db_.SetMetadata(series, MetadataType_LastUpdate, now);
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parents: 1246
diff changeset
685 db_.SetMetadata(study, MetadataType_LastUpdate, now);
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parents: 1246
diff changeset
686 db_.SetMetadata(patient, MetadataType_LastUpdate, now);
1004
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
687
a226e0959d8b DicomInstanceToStore
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parents: 1002
diff changeset
688 // Attach the auto-computed metadata for the instance level,
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
689 // reflecting these additions into the input metadata map
1247
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
690 db_.SetMetadata(instance, MetadataType_Instance_ReceptionDate, now);
1006
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
691 instanceMetadata[MetadataType_Instance_ReceptionDate] = now;
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
692
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
693 db_.SetMetadata(instance, MetadataType_Instance_RemoteAet, remoteAet);
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
694 instanceMetadata[MetadataType_Instance_RemoteAet] = remoteAet;
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
695
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
696 const DicomValue* value;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
697 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL ||
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
698 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
699 {
1247
32fcc5dc7562 abstraction
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parents: 1246
diff changeset
700 db_.SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->AsString());
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
701 instanceMetadata[MetadataType_Instance_IndexInSeries] = value->AsString();
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
702 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
703
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
704 // Check whether the series of this new instance is now completed
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
705 if (isNewSeries)
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
706 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
707 ComputeExpectedNumberOfInstances(db_, series, dicomSummary);
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
708 }
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
709
205
6ab754744446 logging of completed series
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parents: 204
diff changeset
710 SeriesStatus seriesStatus = GetSeriesStatus(series);
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
711 if (seriesStatus == SeriesStatus_Complete)
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
712 {
1237
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parents: 1236
diff changeset
713 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries());
205
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
714 }
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
715
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
716 // Mark the parent resources of this instance as unstable
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
717 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries());
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
718 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy());
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
719 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient());
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
720
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
721 t.Commit(instanceSize);
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
722
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
723 return StoreStatus_Success;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
724 }
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
725 catch (OrthancException& e)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
726 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
727 LOG(ERROR) << "EXCEPTION [" << e.What() << "]";
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
728 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
729
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
730 return StoreStatus_Failure;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
731 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
732
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
733
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
734 void ServerIndex::ComputeStatistics(Json::Value& target)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
735 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
736 boost::mutex::scoped_lock lock(mutex_);
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
737 target = Json::objectValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
738
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
739 uint64_t cs = currentStorageSize_;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
740 assert(cs == db_.GetTotalCompressedSize());
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
741 uint64_t us = db_.GetTotalUncompressedSize();
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
742 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs);
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
743 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
744 target["TotalDiskSizeMB"] = boost::lexical_cast<unsigned int>(cs / MEGA_BYTES);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
745 target["TotalUncompressedSizeMB"] = boost::lexical_cast<unsigned int>(us / MEGA_BYTES);
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
746
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
747 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient));
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
748 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study));
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
749 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series));
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
750 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance));
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
751 }
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
752
187
8e673a65564d refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 186
diff changeset
753
8e673a65564d refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 186
diff changeset
754
585
b2357f1f026f fix types
jodogne
parents: 521
diff changeset
755 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
756 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
757 // Get the expected number of instances in this series (from the metadata)
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
758 int64_t expected;
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
759 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances))
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
760 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
761 return SeriesStatus_Unknown;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
762 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
763
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
764 // Loop over the instances of this series
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
765 std::list<int64_t> children;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
766 db_.GetChildrenInternalId(children, id);
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
767
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
768 std::set<int64_t> instances;
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
769 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
770 it = children.begin(); it != children.end(); ++it)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
771 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
772 // Get the index of this instance in the series
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
773 int64_t index;
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
774 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries))
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
775 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
776 return SeriesStatus_Unknown;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
777 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
778
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
779 if (!(index > 0 && index <= expected))
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
780 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
781 // Out-of-range instance index
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
782 return SeriesStatus_Inconsistent;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
783 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
784
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
785 if (instances.find(index) != instances.end())
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
786 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
787 // Twice the same instance index
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
788 return SeriesStatus_Inconsistent;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
789 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
790
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
791 instances.insert(index);
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
792 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
793
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
794 if (static_cast<int64_t>(instances.size()) == expected)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
795 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
796 return SeriesStatus_Complete;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
797 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
798 else
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
799 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
800 return SeriesStatus_Missing;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
801 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
802 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
803
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
804
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
805
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
806 void ServerIndex::MainDicomTagsToJson(Json::Value& target,
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
807 int64_t resourceId)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
808 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
809 DicomMap tags;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
810 db_.GetMainDicomTags(tags, resourceId);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
811 target["MainDicomTags"] = Json::objectValue;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
812 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags);
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
813 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
814
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
815 bool ServerIndex::LookupResource(Json::Value& result,
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
816 const std::string& publicId,
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
817 ResourceType expectedType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
818 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
819 result = Json::objectValue;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
820
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
821 boost::mutex::scoped_lock lock(mutex_);
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
822
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
823 // Lookup for the requested resource
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
824 int64_t id;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
825 ResourceType type;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
826 if (!db_.LookupResource(publicId, id, type) ||
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
827 type != expectedType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
828 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
829 return false;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
830 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
831
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
832 // Find the parent resource (if it exists)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
833 if (type != ResourceType_Patient)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
834 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
835 int64_t parentId;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
836 if (!db_.LookupParent(parentId, id))
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
837 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
838 throw OrthancException(ErrorCode_InternalError);
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
839 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
840
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
841 std::string parent = db_.GetPublicId(parentId);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
842
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
843 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
844 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
845 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
846 result["ParentPatient"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
847 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
848
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
849 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
850 result["ParentStudy"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
851 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
852
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
853 case ResourceType_Instance:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
854 result["ParentSeries"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
855 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
856
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
857 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
858 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
859 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
860 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
861
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
862 // List the children resources
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
863 std::list<std::string> children;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
864 db_.GetChildrenPublicId(children, id);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
865
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
866 if (type != ResourceType_Instance)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
867 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
868 Json::Value c = Json::arrayValue;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
869
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
870 for (std::list<std::string>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
871 it = children.begin(); it != children.end(); ++it)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
872 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
873 c.append(*it);
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
874 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
875
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
876 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
877 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
878 case ResourceType_Patient:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
879 result["Studies"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
880 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
881
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
882 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
883 result["Series"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
884 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
885
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
886 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
887 result["Instances"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
888 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
889
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
890 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
891 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
892 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
893 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
894
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
895 // Set the resource type
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
896 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
897 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
898 case ResourceType_Patient:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
899 result["Type"] = "Patient";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
900 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
901
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
902 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
903 result["Type"] = "Study";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
904 break;
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
905
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
906 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
907 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
908 result["Type"] = "Series";
434
ccf3a0a43dac EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 433
diff changeset
909 result["Status"] = EnumerationToString(GetSeriesStatus(id));
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
910
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
911 int64_t i;
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
912 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances))
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
913 result["ExpectedNumberOfInstances"] = static_cast<int>(i);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
914 else
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
915 result["ExpectedNumberOfInstances"] = Json::nullValue;
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
916
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
917 break;
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
918 }
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
919
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
920 case ResourceType_Instance:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
921 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
922 result["Type"] = "Instance";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
923
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
924 FileInfo attachment;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
925 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom))
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
926 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
927 throw OrthancException(ErrorCode_InternalError);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
928 }
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
929
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
930 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize());
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
931 result["FileUuid"] = attachment.GetUuid();
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
932
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
933 int64_t i;
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
934 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries))
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
935 result["IndexInSeries"] = static_cast<int>(i);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
936 else
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
937 result["IndexInSeries"] = Json::nullValue;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
938
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
939 break;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
940 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
941
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
942 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
943 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
944 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
945
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
946 // Record the remaining information
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
947 result["ID"] = publicId;
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
948 MainDicomTagsToJson(result, id);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
949
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
950 std::string tmp;
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
951
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
952 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
953 {
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
954 result["AnonymizedFrom"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
955 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
956
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
957 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
958 {
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
959 result["ModifiedFrom"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
960 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
961
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
962 if (type == ResourceType_Patient ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
963 type == ResourceType_Study ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
964 type == ResourceType_Series)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
965 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
966 result["IsStable"] = !unstableResources_.Contains(id);
1148
ac36589f699e LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1139
diff changeset
967
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
968 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
969 {
1148
ac36589f699e LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1139
diff changeset
970 result["LastUpdate"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
971 }
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
972 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
973
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
974 return true;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
975 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
976
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
977
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
978 bool ServerIndex::LookupAttachment(FileInfo& attachment,
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
979 const std::string& instanceUuid,
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
980 FileContentType contentType)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
981 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
982 boost::mutex::scoped_lock lock(mutex_);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
983
193
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
984 int64_t id;
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
985 ResourceType type;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
986 if (!db_.LookupResource(instanceUuid, id, type))
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
987 {
1113
ba5c0908600c Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1102
diff changeset
988 throw OrthancException(ErrorCode_UnknownResource);
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
989 }
193
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
990
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
991 if (db_.LookupAttachment(attachment, id, contentType))
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
992 {
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
993 assert(attachment.GetContentType() == contentType);
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
994 return true;
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
995 }
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
996 else
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
997 {
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
998 return false;
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
999 }
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1000 }
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1001
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1002
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1003
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1004 void ServerIndex::GetAllUuids(Json::Value& target,
190
b6cef9d45cc3 getallpublicids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 189
diff changeset
1005 ResourceType resourceType)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1006 {
1241
90d2f320862d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1240
diff changeset
1007 std::list<std::string> lst;
90d2f320862d refactoring
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diff changeset
1008
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diff changeset
1009 {
90d2f320862d refactoring
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parents: 1240
diff changeset
1010 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
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diff changeset
1011 db_.GetAllPublicIds(lst, resourceType);
1241
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diff changeset
1012 }
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diff changeset
1013
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diff changeset
1014 target = Json::arrayValue;
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parents: 1240
diff changeset
1015 for (std::list<std::string>::const_iterator
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parents: 1240
diff changeset
1016 it = lst.begin(); it != lst.end(); it++)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1240
diff changeset
1017 {
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diff changeset
1018 target.append(*it);
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parents: 1240
diff changeset
1019 }
0
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diff changeset
1020 }
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parents:
diff changeset
1021
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parents:
diff changeset
1022
1244
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diff changeset
1023 template <typename T>
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1024 static void FormatLog(Json::Value& target,
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1025 const std::list<T>& log,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1026 const std::string& name,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1027 bool done,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1028 int64_t since)
1240
62c35e4b67db refactoring
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diff changeset
1029 {
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parents: 1239
diff changeset
1030 Json::Value items = Json::arrayValue;
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1031 for (typename std::list<T>::const_iterator
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1032 it = log.begin(); it != log.end(); it++)
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1033 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1034 Json::Value item;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1035 it->Format(item);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1036 items.append(item);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1037 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1038
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1039 target = Json::objectValue;
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1040 target[name] = items;
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1041 target["Done"] = done;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1042
1244
a0e420c5f2b8 refactoring
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parents: 1241
diff changeset
1043 int64_t last = (log.size() == 0 ? since : log.back().GetSeq());
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1044 target["Last"] = static_cast<int>(last);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1045 }
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diff changeset
1046
62c35e4b67db refactoring
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parents: 1239
diff changeset
1047
1247
32fcc5dc7562 abstraction
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diff changeset
1048 void ServerIndex::GetChanges(Json::Value& target,
204
7f4acf490179 changes api
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diff changeset
1049 int64_t since,
0
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diff changeset
1050 unsigned int maxResults)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1051 {
1240
62c35e4b67db refactoring
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parents: 1239
diff changeset
1052 std::list<ServerIndexChange> changes;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1053 bool done;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1054
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1055 {
62c35e4b67db refactoring
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parents: 1239
diff changeset
1056 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1057 db_.GetChanges(changes, done, since, maxResults);
1240
62c35e4b67db refactoring
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parents: 1239
diff changeset
1058 }
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parents: 1239
diff changeset
1059
1244
a0e420c5f2b8 refactoring
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diff changeset
1060 FormatLog(target, changes, "Changes", done, since);
237
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diff changeset
1061 }
0
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parents:
diff changeset
1062
1240
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parents: 1239
diff changeset
1063
1247
32fcc5dc7562 abstraction
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diff changeset
1064 void ServerIndex::GetLastChange(Json::Value& target)
237
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diff changeset
1065 {
1240
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diff changeset
1066 std::list<ServerIndexChange> changes;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1067
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parents: 1239
diff changeset
1068 {
62c35e4b67db refactoring
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parents: 1239
diff changeset
1069 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1070 db_.GetLastChange(changes);
1240
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1071 }
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parents: 1239
diff changeset
1072
1244
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parents: 1241
diff changeset
1073 FormatLog(target, changes, "Changes", true, 0);
0
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diff changeset
1074 }
231
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diff changeset
1075
1240
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diff changeset
1076
231
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diff changeset
1077 void ServerIndex::LogExportedResource(const std::string& publicId,
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diff changeset
1078 const std::string& remoteModality)
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diff changeset
1079 {
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diff changeset
1080 boost::mutex::scoped_lock lock(mutex_);
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diff changeset
1081
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diff changeset
1082 int64_t id;
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diff changeset
1083 ResourceType type;
1247
32fcc5dc7562 abstraction
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parents: 1246
diff changeset
1084 if (!db_.LookupResource(publicId, id, type))
231
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diff changeset
1085 {
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diff changeset
1086 throw OrthancException(ErrorCode_InternalError);
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parents: 226
diff changeset
1087 }
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diff changeset
1088
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1089 std::string patientId;
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diff changeset
1090 std::string studyInstanceUid;
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diff changeset
1091 std::string seriesInstanceUid;
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diff changeset
1092 std::string sopInstanceUid;
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diff changeset
1093
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
1094 int64_t currentId = id;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1095 ResourceType currentType = type;
8098448bd827 export log
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parents: 226
diff changeset
1096
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diff changeset
1097 // Iteratively go up inside the patient/study/series/instance hierarchy
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parents: 226
diff changeset
1098 bool done = false;
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diff changeset
1099 while (!done)
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parents: 226
diff changeset
1100 {
8098448bd827 export log
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parents: 226
diff changeset
1101 DicomMap map;
1247
32fcc5dc7562 abstraction
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parents: 1246
diff changeset
1102 db_.GetMainDicomTags(map, currentId);
231
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diff changeset
1103
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diff changeset
1104 switch (currentType)
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diff changeset
1105 {
269
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diff changeset
1106 case ResourceType_Patient:
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diff changeset
1107 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).AsString();
f6fdf5abe751 recycling up and running
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diff changeset
1108 done = true;
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parents: 268
diff changeset
1109 break;
231
8098448bd827 export log
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parents: 226
diff changeset
1110
269
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diff changeset
1111 case ResourceType_Study:
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parents: 268
diff changeset
1112 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString();
f6fdf5abe751 recycling up and running
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diff changeset
1113 currentType = ResourceType_Patient;
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parents: 268
diff changeset
1114 break;
231
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diff changeset
1115
269
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diff changeset
1116 case ResourceType_Series:
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parents: 268
diff changeset
1117 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString();
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diff changeset
1118 currentType = ResourceType_Study;
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parents: 268
diff changeset
1119 break;
231
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diff changeset
1120
269
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diff changeset
1121 case ResourceType_Instance:
f6fdf5abe751 recycling up and running
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parents: 268
diff changeset
1122 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).AsString();
f6fdf5abe751 recycling up and running
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diff changeset
1123 currentType = ResourceType_Series;
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parents: 268
diff changeset
1124 break;
231
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diff changeset
1125
269
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diff changeset
1126 default:
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diff changeset
1127 throw OrthancException(ErrorCode_InternalError);
231
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diff changeset
1128 }
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diff changeset
1129
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diff changeset
1130 // If we have not reached the Patient level, find the parent of
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diff changeset
1131 // the current resource
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parents: 226
diff changeset
1132 if (!done)
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parents: 226
diff changeset
1133 {
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32fcc5dc7562 abstraction
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parents: 1246
diff changeset
1134 bool ok = db_.LookupParent(currentId, currentId);
375
d1ea72f1c967 major fix of storescu
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parents: 315
diff changeset
1135 assert(ok);
231
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diff changeset
1136 }
8098448bd827 export log
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diff changeset
1137 }
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parents: 226
diff changeset
1138
1235
9b4977e3c19d abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1218
diff changeset
1139 // No need for a SQLite::ITransaction here, as we only insert 1 record
1246
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1140 ExportedResource resource(-1,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1141 type,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1142 publicId,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1143 remoteModality,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1144 Toolbox::GetNowIsoString(),
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1145 patientId,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1146 studyInstanceUid,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1147 seriesInstanceUid,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1148 sopInstanceUid);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1149 db_.LogExportedResource(resource);
231
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diff changeset
1150 }
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diff changeset
1151
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diff changeset
1152
1247
32fcc5dc7562 abstraction
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parents: 1246
diff changeset
1153 void ServerIndex::GetExportedResources(Json::Value& target,
231
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diff changeset
1154 int64_t since,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1155 unsigned int maxResults)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1156 {
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1157 std::list<ExportedResource> exported;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1158 bool done;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1159
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1160 {
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1161 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1162 db_.GetExportedResources(exported, done, since, maxResults);
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1163 }
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1164
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1165 FormatLog(target, exported, "Exports", done, since);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1166 }
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1167
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1168
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1169 void ServerIndex::GetLastExportedResource(Json::Value& target)
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1170 {
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1171 std::list<ExportedResource> exported;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1172
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1173 {
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1174 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1175 db_.GetLastExportedResource(exported);
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1176 }
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1177
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1178 FormatLog(target, exported, "Exports", true, 0);
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1179 }
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1180
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1181
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1182 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize)
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1183 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1184 if (maximumStorageSize_ != 0)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1185 {
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1186 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove();
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1187 assert(db_.GetTotalCompressedSize() == currentSize);
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1188
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1189 if (currentSize + instanceSize > maximumStorageSize_)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1190 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1191 return true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1192 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1193 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1194
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1195 if (maximumPatients_ != 0)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1196 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1197 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1198 if (patientCount > maximumPatients_)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1199 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1200 return true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1201 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1202 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1203
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1204 return false;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1205 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1206
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1207
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1208 void ServerIndex::Recycle(uint64_t instanceSize,
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1209 const std::string& newPatientId)
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1210 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1211 if (!IsRecyclingNeeded(instanceSize))
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1212 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1213 return;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1214 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1215
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1216 // Check whether other DICOM instances from this patient are
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1217 // already stored
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1218 int64_t patientToAvoid;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1219 ResourceType type;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1220 bool hasPatientToAvoid = db_.LookupResource(newPatientId, patientToAvoid, type);
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1221
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1222 if (hasPatientToAvoid && type != ResourceType_Patient)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1223 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1224 throw OrthancException(ErrorCode_InternalError);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1225 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1226
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1227 // Iteratively select patient to remove until there is enough
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1228 // space in the DICOM store
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1229 int64_t patientToRecycle;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1230 while (true)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1231 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1232 // If other instances of this patient are already in the store,
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1233 // we must avoid to recycle them
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1234 bool ok = hasPatientToAvoid ?
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1235 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) :
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1236 db_.SelectPatientToRecycle(patientToRecycle);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1237
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1238 if (!ok)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1239 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1240 throw OrthancException(ErrorCode_FullStorage);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1241 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1242
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1243 LOG(INFO) << "Recycling one patient";
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1244 db_.DeleteResource(patientToRecycle);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1245
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1246 if (!IsRecyclingNeeded(instanceSize))
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1247 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1248 // OK, we're done
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1249 break;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1250 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1251 }
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1252 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1253
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1254 void ServerIndex::SetMaximumPatientCount(unsigned int count)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1255 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1256 boost::mutex::scoped_lock lock(mutex_);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1257 maximumPatients_ = count;
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1258
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1259 if (count == 0)
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1260 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1261 LOG(WARNING) << "No limit on the number of stored patients";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1262 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1263 else
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1264 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1265 LOG(WARNING) << "At most " << count << " patients will be stored";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1266 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1267
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1268 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1269 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1270
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1271 void ServerIndex::SetMaximumStorageSize(uint64_t size)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1272 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1273 boost::mutex::scoped_lock lock(mutex_);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1274 maximumStorageSize_ = size;
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1275
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1276 if (size == 0)
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1277 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1278 LOG(WARNING) << "No limit on the size of the storage area";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1279 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1280 else
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1281 {
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1282 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area";
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1283 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1284
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1285 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1286 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1287
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1288 void ServerIndex::StandaloneRecycling()
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1289 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1290 // WARNING: No mutex here, do not include this as a public method
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1291 Transaction t(*this);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1292 Recycle(0, "");
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1293 t.Commit(0);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1294 }
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1295
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1296
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1297 bool ServerIndex::IsProtectedPatient(const std::string& publicId)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1298 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1299 boost::mutex::scoped_lock lock(mutex_);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1300
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1301 // Lookup for the requested resource
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1302 int64_t id;
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1303 ResourceType type;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1304 if (!db_.LookupResource(publicId, id, type) ||
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1305 type != ResourceType_Patient)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1306 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1307 throw OrthancException(ErrorCode_ParameterOutOfRange);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1308 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1309
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1310 return db_.IsProtectedPatient(id);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1311 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1312
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1313
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1314 void ServerIndex::SetProtectedPatient(const std::string& publicId,
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1315 bool isProtected)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1316 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1317 boost::mutex::scoped_lock lock(mutex_);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1318
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1319 // Lookup for the requested resource
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1320 int64_t id;
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1321 ResourceType type;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1322 if (!db_.LookupResource(publicId, id, type) ||
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1323 type != ResourceType_Patient)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1324 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1325 throw OrthancException(ErrorCode_ParameterOutOfRange);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1326 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1327
1235
9b4977e3c19d abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1218
diff changeset
1328 // No need for a SQLite::ITransaction here, as we only make 1 write to the DB
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1329 db_.SetProtectedPatient(id, isProtected);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1330
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1331 if (isProtected)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1332 LOG(INFO) << "Patient " << publicId << " has been protected";
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1333 else
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1334 LOG(INFO) << "Patient " << publicId << " has been unprotected";
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1335 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1336
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1337
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1338 void ServerIndex::GetChildren(std::list<std::string>& result,
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1339 const std::string& publicId)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1340 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1341 result.clear();
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1342
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1343 boost::mutex::scoped_lock lock(mutex_);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1344
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1345 ResourceType type;
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1346 int64_t resource;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1347 if (!db_.LookupResource(publicId, resource, type))
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1348 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1349 throw OrthancException(ErrorCode_UnknownResource);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1350 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1351
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1352 if (type == ResourceType_Instance)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1353 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1354 // An instance cannot have a child
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1355 throw OrthancException(ErrorCode_BadParameterType);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1356 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1357
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1358 std::list<int64_t> tmp;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1359 db_.GetChildrenInternalId(tmp, resource);
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1360
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1361 for (std::list<int64_t>::const_iterator
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1362 it = tmp.begin(); it != tmp.end(); ++it)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1363 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1364 result.push_back(db_.GetPublicId(*it));
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1365 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1366 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1367
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1368
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1369 void ServerIndex::GetChildInstances(std::list<std::string>& result,
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1370 const std::string& publicId)
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1371 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1372 result.clear();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1373
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1374 boost::mutex::scoped_lock lock(mutex_);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1375
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1376 ResourceType type;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1377 int64_t top;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1378 if (!db_.LookupResource(publicId, top, type))
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1379 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1380 throw OrthancException(ErrorCode_UnknownResource);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1381 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1382
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1383 if (type == ResourceType_Instance)
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1384 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1385 // The resource is already an instance: Do not go down the hierarchy
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1386 result.push_back(publicId);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1387 return;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1388 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1389
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1390 std::stack<int64_t> toExplore;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1391 toExplore.push(top);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1392
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1393 std::list<int64_t> tmp;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1394
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1395 while (!toExplore.empty())
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1396 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1397 // Get the internal ID of the current resource
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1398 int64_t resource = toExplore.top();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1399 toExplore.pop();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1400
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1401 if (db_.GetResourceType(resource) == ResourceType_Instance)
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1402 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1403 result.push_back(db_.GetPublicId(resource));
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1404 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1405 else
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1406 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1407 // Tag all the children of this resource as to be explored
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1408 db_.GetChildrenInternalId(tmp, resource);
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1409 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1410 it = tmp.begin(); it != tmp.end(); ++it)
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1411 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1412 toExplore.push(*it);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1413 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1414 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1415 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1416 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1417
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1418
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1419 void ServerIndex::SetMetadata(const std::string& publicId,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1420 MetadataType type,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1421 const std::string& value)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1422 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1423 boost::mutex::scoped_lock lock(mutex_);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1424
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1425 ResourceType rtype;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1426 int64_t id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1427 if (!db_.LookupResource(publicId, id, rtype))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1428 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1429 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1430 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1431
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1432 db_.SetMetadata(id, type, value);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1433 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1434
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1435
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1436 void ServerIndex::DeleteMetadata(const std::string& publicId,
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1437 MetadataType type)
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1438 {
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1439 boost::mutex::scoped_lock lock(mutex_);
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1440
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1441 ResourceType rtype;
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1442 int64_t id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1443 if (!db_.LookupResource(publicId, id, rtype))
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1444 {
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1445 throw OrthancException(ErrorCode_UnknownResource);
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1446 }
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1447
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1448 db_.DeleteMetadata(id, type);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1449 }
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1450
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1451
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1452 bool ServerIndex::LookupMetadata(std::string& target,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1453 const std::string& publicId,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1454 MetadataType type)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1455 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1456 boost::mutex::scoped_lock lock(mutex_);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1457
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1458 ResourceType rtype;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1459 int64_t id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1460 if (!db_.LookupResource(publicId, id, rtype))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1461 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1462 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1463 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1464
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1465 return db_.LookupMetadata(target, id, type);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1466 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1467
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1468
739
696dbb4fd390 api uniformization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 714
diff changeset
1469 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target,
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1470 const std::string& publicId)
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1471 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1472 boost::mutex::scoped_lock lock(mutex_);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1473
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1474 ResourceType rtype;
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1475 int64_t id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1476 if (!db_.LookupResource(publicId, id, rtype))
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1477 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1478 throw OrthancException(ErrorCode_UnknownResource);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1479 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1480
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1481 db_.ListAvailableMetadata(target, id);
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1482 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1483
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1484
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1485 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target,
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1486 const std::string& publicId,
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1487 ResourceType expectedType)
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1488 {
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1489 boost::mutex::scoped_lock lock(mutex_);
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1490
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1491 ResourceType type;
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1492 int64_t id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1493 if (!db_.LookupResource(publicId, id, type) ||
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1494 expectedType != type)
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1495 {
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1496 throw OrthancException(ErrorCode_UnknownResource);
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1497 }
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1498
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1499 db_.ListAvailableAttachments(target, id);
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1500 }
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1501
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1502
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1503 bool ServerIndex::LookupParent(std::string& target,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1504 const std::string& publicId)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1505 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1506 boost::mutex::scoped_lock lock(mutex_);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1507
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1508 ResourceType type;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1509 int64_t id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1510 if (!db_.LookupResource(publicId, id, type))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1511 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1512 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1513 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1514
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1515 int64_t parentId;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1516 if (db_.LookupParent(parentId, id))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1517 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1518 target = db_.GetPublicId(parentId);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1519 return true;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1520 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1521 else
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1522 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1523 return false;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1524 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1525 }
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1526
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1527
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1528 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1529 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1530 boost::mutex::scoped_lock lock(mutex_);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1531
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1532 std::auto_ptr<SQLite::ITransaction> transaction(db_.StartTransaction());
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1533
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1534 transaction->Begin();
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1535 uint64_t seq = IncrementGlobalSequenceInternal(sequence);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1536 transaction->Commit();
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1537
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1538 return seq;
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1539 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1540
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1541
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1542
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1543 void ServerIndex::LogChange(ChangeType changeType,
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1544 const std::string& publicId)
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1545 {
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1546 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1547 std::auto_ptr<SQLite::ITransaction> transaction(db_.StartTransaction());
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1548 transaction->Begin();
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1549
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1550 int64_t id;
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1551 ResourceType type;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1552 if (!db_.LookupResource(publicId, id, type))
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1553 {
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1554 throw OrthancException(ErrorCode_UnknownResource);
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1555 }
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1556
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1557 LogChange(id, changeType, type, publicId);
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1558
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1559 transaction->Commit();
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1560 }
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1561
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1562
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1563 void ServerIndex::DeleteChanges()
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1564 {
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1565 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1566 db_.ClearTable("Changes");
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1567 }
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1568
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1569 void ServerIndex::DeleteExportedResources()
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1570 {
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1571 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1572 db_.ClearTable("ExportedResources");
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1573 }
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1574
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1575
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1576 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1577 /* out */ uint64_t& uncompressedSize,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1578 /* out */ unsigned int& countStudies,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1579 /* out */ unsigned int& countSeries,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1580 /* out */ unsigned int& countInstances,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1581 /* in */ int64_t id,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1582 /* in */ ResourceType type)
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1583 {
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1584 std::stack<int64_t> toExplore;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1585 toExplore.push(id);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1586
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1587 countInstances = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1588 countSeries = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1589 countStudies = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1590 compressedSize = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1591 uncompressedSize = 0;
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1592
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1593 while (!toExplore.empty())
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1594 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1595 // Get the internal ID of the current resource
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1596 int64_t resource = toExplore.top();
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1597 toExplore.pop();
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1598
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1599 ResourceType thisType = db_.GetResourceType(resource);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1600
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1601 std::list<FileContentType> f;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1602 db_.ListAvailableAttachments(f, resource);
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1603
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1604 for (std::list<FileContentType>::const_iterator
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1605 it = f.begin(); it != f.end(); ++it)
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1606 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1607 FileInfo attachment;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1608 if (db_.LookupAttachment(attachment, resource, *it))
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1609 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1610 compressedSize += attachment.GetCompressedSize();
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1611 uncompressedSize += attachment.GetUncompressedSize();
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1612 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1613 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1614
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1615 if (thisType == ResourceType_Instance)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1616 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1617 countInstances++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1618 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1619 else
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1620 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1621 switch (thisType)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1622 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1623 case ResourceType_Study:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1624 countStudies++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1625 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1626
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1627 case ResourceType_Series:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1628 countSeries++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1629 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1630
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1631 default:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1632 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1633 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1634
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1635 // Tag all the children of this resource as to be explored
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1636 std::list<int64_t> tmp;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1637 db_.GetChildrenInternalId(tmp, resource);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1638 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1639 it = tmp.begin(); it != tmp.end(); ++it)
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1640 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1641 toExplore.push(*it);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1642 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1643 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1644 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1645
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1646 if (countStudies == 0)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1647 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1648 countStudies = 1;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1649 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1650
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1651 if (countSeries == 0)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1652 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1653 countSeries = 1;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1654 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1655 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1656
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1657
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1658
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1659 void ServerIndex::GetStatistics(Json::Value& target,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1660 const std::string& publicId)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1661 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1662 boost::mutex::scoped_lock lock(mutex_);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1663
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1664 ResourceType type;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1665 int64_t top;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1666 if (!db_.LookupResource(publicId, top, type))
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1667 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1668 throw OrthancException(ErrorCode_UnknownResource);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1669 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1670
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1671 uint64_t uncompressedSize;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1672 uint64_t compressedSize;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1673 unsigned int countStudies;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1674 unsigned int countSeries;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1675 unsigned int countInstances;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1676 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1677 countSeries, countInstances, top, type);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1678
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1679 target = Json::objectValue;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1680 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1681 target["DiskSizeMB"] = boost::lexical_cast<unsigned int>(compressedSize / MEGA_BYTES);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1682 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1683 target["UncompressedSizeMB"] = boost::lexical_cast<unsigned int>(uncompressedSize / MEGA_BYTES);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1684
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1685 switch (type)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1686 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1687 // Do NOT add "break" below this point!
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1688 case ResourceType_Patient:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1689 target["CountStudies"] = countStudies;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1690
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1691 case ResourceType_Study:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1692 target["CountSeries"] = countSeries;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1693
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1694 case ResourceType_Series:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1695 target["CountInstances"] = countInstances;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1696
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1697 case ResourceType_Instance:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1698 default:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1699 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1700 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1701 }
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1702
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1703
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1704 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1705 /* out */ uint64_t& uncompressedSize,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1706 /* out */ unsigned int& countStudies,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1707 /* out */ unsigned int& countSeries,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1708 /* out */ unsigned int& countInstances,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1709 const std::string& publicId)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1710 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1711 boost::mutex::scoped_lock lock(mutex_);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1712
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1713 ResourceType type;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1714 int64_t top;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1715 if (!db_.LookupResource(publicId, top, type))
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1716 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1717 throw OrthancException(ErrorCode_UnknownResource);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1718 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1719
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1720 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1721 countSeries, countInstances, top, type);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1722 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1723
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1724
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1725 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1726 {
810
401a9633e492 configuration into a namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 744
diff changeset
1727 int stableAge = Configuration::GetGlobalIntegerParameter("StableAge", 60);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1728 if (stableAge <= 0)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1729 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1730 stableAge = 60;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1731 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1732
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1733 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")";
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1734
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1735 while (!that->done_)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1736 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1737 // Check for stable resources each second
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1738 boost::this_thread::sleep(boost::posix_time::seconds(1));
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1739
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1740 boost::mutex::scoped_lock lock(that->mutex_);
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1741
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1742 while (!that->unstableResources_.IsEmpty() &&
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1743 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge))
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1744 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1745 // This DICOM resource has not received any new instance for
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1746 // some time. It can be considered as stable.
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1747
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1748 UnstableResourcePayload payload;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1749 int64_t id = that->unstableResources_.RemoveOldest(payload);
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1750
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1751 // Ensure that the resource is still existing before logging the change
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1752 if (that->db_.IsExistingResource(id))
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1753 {
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1754 switch (payload.GetResourceType())
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1755 {
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1756 case ResourceType_Patient:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1757 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1758 break;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1759
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1760 case ResourceType_Study:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1761 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1762 break;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1763
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1764 case ResourceType_Series:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1765 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1766 break;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1767
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1768 default:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1769 throw OrthancException(ErrorCode_InternalError);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1770 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1771
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1772 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1773 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1774 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1775 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1776
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1777 LOG(INFO) << "Closing the monitor thread for stable resources";
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1778 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1779
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1780
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1781 void ServerIndex::MarkAsUnstable(int64_t id,
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1782 Orthanc::ResourceType type,
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1783 const std::string& publicId)
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1784 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1785 // WARNING: Before calling this method, "mutex_" must be locked.
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1786
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1787 assert(type == Orthanc::ResourceType_Patient ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1788 type == Orthanc::ResourceType_Study ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1789 type == Orthanc::ResourceType_Series);
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1790
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1791 UnstableResourcePayload payload(type, publicId);
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1792 unstableResources_.AddOrMakeMostRecent(id, payload);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1793 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id;
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1177
diff changeset
1794
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1795 LogChange(id, ChangeType_NewChildInstance, type, publicId);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1796 }
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1797
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1798
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1799
1162
1ea4094d077c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1158
diff changeset
1800 void ServerIndex::LookupIdentifier(std::list<std::string>& result,
1ea4094d077c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1158
diff changeset
1801 const DicomTag& tag,
1ea4094d077c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1158
diff changeset
1802 const std::string& value,
1ea4094d077c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1158
diff changeset
1803 ResourceType type)
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1804 {
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1805 result.clear();
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1806
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1807 boost::mutex::scoped_lock lock(mutex_);
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1808
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1809 std::list<int64_t> id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1810 db_.LookupIdentifier(id, tag, value);
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1811
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1812 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1813 it = id.begin(); it != id.end(); ++it)
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1814 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1815 if (db_.GetResourceType(*it) == type)
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1816 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1817 result.push_back(db_.GetPublicId(*it));
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1818 }
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1819 }
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1820 }
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1821
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
1822
1162
1ea4094d077c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1158
diff changeset
1823 void ServerIndex::LookupIdentifier(std::list<std::string>& result,
1ea4094d077c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1158
diff changeset
1824 const DicomTag& tag,
1ea4094d077c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1158
diff changeset
1825 const std::string& value)
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1826 {
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1827 result.clear();
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1828
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1829 boost::mutex::scoped_lock lock(mutex_);
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1830
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1831 std::list<int64_t> id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1832 db_.LookupIdentifier(id, tag, value);
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1833
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1834 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1835 it = id.begin(); it != id.end(); ++it)
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1836 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1837 result.push_back(db_.GetPublicId(*it));
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1838 }
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1839 }
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1840
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1841
1162
1ea4094d077c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1158
diff changeset
1842 void ServerIndex::LookupIdentifier(std::list< std::pair<ResourceType, std::string> >& result,
1ea4094d077c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1158
diff changeset
1843 const std::string& value)
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1844 {
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1845 result.clear();
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1846
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1847 boost::mutex::scoped_lock lock(mutex_);
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1848
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1849 std::list<int64_t> id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1850 db_.LookupIdentifier(id, value);
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1851
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1852 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1853 it = id.begin(); it != id.end(); ++it)
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1854 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1855 result.push_back(std::make_pair(db_.GetResourceType(*it),
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1856 db_.GetPublicId(*it)));
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1857 }
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
1858 }
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1859
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1860
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1861 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment,
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1862 const std::string& publicId)
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1863 {
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1864 boost::mutex::scoped_lock lock(mutex_);
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1865
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1866 Transaction t(*this);
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1867
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1868 ResourceType resourceType;
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1869 int64_t resourceId;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1870 if (!db_.LookupResource(publicId, resourceId, resourceType))
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1871 {
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1872 return StoreStatus_Failure; // Inexistent resource
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1873 }
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1874
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1875 // Remove possible previous attachment
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1876 db_.DeleteAttachment(resourceId, attachment.GetContentType());
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1877
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1878 // Locate the patient of the target resource
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1879 int64_t patientId = resourceId;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1880 for (;;)
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1881 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1882 int64_t parent;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1883 if (db_.LookupParent(parent, patientId))
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1884 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1885 // We have not reached the patient level yet
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1886 patientId = parent;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1887 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1888 else
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1889 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1890 // We have reached the patient level
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1891 break;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1892 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1893 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1894
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1895 // Possibly apply the recycling mechanism while preserving this patient
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1896 assert(db_.GetResourceType(patientId) == ResourceType_Patient);
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1897 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId));
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
1898
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1899 db_.AddAttachment(resourceId, attachment);
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1900
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1901 t.Commit(attachment.GetCompressedSize());
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1902
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1903 return StoreStatus_Success;
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1904 }
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1905
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1906
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1907 void ServerIndex::DeleteAttachment(const std::string& publicId,
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1908 FileContentType type)
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1909 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1910 boost::mutex::scoped_lock lock(mutex_);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1911
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1912 Transaction t(*this);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1913
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1914 ResourceType rtype;
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1915 int64_t id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1916 if (!db_.LookupResource(publicId, id, rtype))
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1917 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1918 throw OrthancException(ErrorCode_UnknownResource);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1919 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1920
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1921 db_.DeleteAttachment(id, type);
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1922
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1923 t.Commit(0);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1924 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1925
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1926
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1927 bool ServerIndex::GetMetadata(Json::Value& target,
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1928 const std::string& publicId)
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1929 {
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1930 boost::mutex::scoped_lock lock(mutex_);
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1931
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1932 target = Json::objectValue;
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1933
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1934 ResourceType type;
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1935 int64_t id;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1936 if (!db_.LookupResource(publicId, id, type))
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1937 {
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1938 return false;
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1939 }
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1940
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1941 std::list<MetadataType> metadata;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1942 db_.ListAvailableMetadata(metadata, id);
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1943
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1944 for (std::list<MetadataType>::const_iterator
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1945 it = metadata.begin(); it != metadata.end(); it++)
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1946 {
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1947 std::string key = EnumerationToString(*it);
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1948
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1949 std::string value;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1950 if (!db_.LookupMetadata(value, id, *it))
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1951 {
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1952 value.clear();
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1953 }
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1954
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1955 target[key] = value;
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1956 }
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1957
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1958 return true;
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
1959 }
1218
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1960
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1961
1249
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
1962 void ServerIndex::SetGlobalProperty(GlobalProperty property,
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
1963 const std::string& value)
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
1964 {
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
1965 boost::mutex::scoped_lock lock(mutex_);
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
1966 db_.SetGlobalProperty(property, value);
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
1967 }
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
1968
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
1969
1218
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1970 std::string ServerIndex::GetGlobalProperty(GlobalProperty property,
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1971 const std::string& defaultValue)
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1972 {
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1973 boost::mutex::scoped_lock lock(mutex_);
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
1974
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
1975 std::string value;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1976 if (db_.LookupGlobalProperty(value, property))
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
1977 {
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
1978 return value;
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
1979 }
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
1980 else
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
1981 {
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
1982 return defaultValue;
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
1983 }
1218
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1984 }
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1985
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1986 }