Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 1261:ef74281b2ffa
deploy
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 08 Jan 2015 15:45:20 +0100 |
| parents | 40725595aaf0 |
| children | cf5bd2dc3b7a |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 689 | 3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, |
| 0 | 4 * Belgium |
| 5 * | |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
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33 #include "PrecompiledHeadersServer.h" |
| 0 | 34 #include "ServerIndex.h" |
| 35 | |
| 6 | 36 #ifndef NOMINMAX |
| 2 | 37 #define NOMINMAX |
| 6 | 38 #endif |
| 39 | |
| 1198 | 40 #include "ServerIndexChange.h" |
| 8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
| 0 | 43 #include "../Core/Toolbox.h" |
| 44 #include "../Core/Uuid.h" | |
| 45 #include "../Core/DicomFormat/DicomArray.h" | |
| 46 #include "FromDcmtkBridge.h" | |
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47 #include "ServerContext.h" |
| 0 | 48 |
| 49 #include <boost/lexical_cast.hpp> | |
| 50 #include <stdio.h> | |
| 108 | 51 #include <glog/logging.h> |
| 0 | 52 |
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53 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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54 |
| 62 | 55 namespace Orthanc |
| 0 | 56 { |
| 57 namespace Internals | |
| 58 { | |
| 202 | 59 class ServerIndexListener : public IServerIndexListener |
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60 { |
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61 private: |
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62 struct FileToRemove |
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63 { |
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64 private: |
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65 std::string uuid_; |
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66 FileContentType type_; |
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67 |
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68 public: |
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69 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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70 type_(info.GetContentType()) |
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71 { |
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72 } |
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73 |
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74 const std::string& GetUuid() const |
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75 { |
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76 return uuid_; |
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77 } |
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78 |
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79 FileContentType GetContentType() const |
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80 { |
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81 return type_; |
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82 } |
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83 }; |
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84 |
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85 ServerContext& context_; |
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86 bool hasRemainingLevel_; |
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87 ResourceType remainingType_; |
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88 std::string remainingPublicId_; |
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89 std::list<FileToRemove> pendingFilesToRemove_; |
| 1196 | 90 std::list<ServerIndexChange> pendingChanges_; |
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91 uint64_t sizeOfFilesToRemove_; |
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92 bool insideTransaction_; |
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93 |
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94 void Reset() |
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95 { |
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96 sizeOfFilesToRemove_ = 0; |
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97 hasRemainingLevel_ = false; |
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98 pendingFilesToRemove_.clear(); |
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99 pendingChanges_.clear(); |
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100 } |
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101 |
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102 public: |
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103 ServerIndexListener(ServerContext& context) : context_(context), |
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104 insideTransaction_(false) |
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105 { |
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106 Reset(); |
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107 assert(ResourceType_Patient < ResourceType_Study && |
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108 ResourceType_Study < ResourceType_Series && |
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109 ResourceType_Series < ResourceType_Instance); |
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110 } |
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111 |
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112 void StartTransaction() |
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113 { |
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114 Reset(); |
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115 insideTransaction_ = true; |
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116 } |
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117 |
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118 void EndTransaction() |
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119 { |
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120 insideTransaction_ = false; |
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121 } |
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122 |
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123 uint64_t GetSizeOfFilesToRemove() |
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124 { |
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125 return sizeOfFilesToRemove_; |
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126 } |
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127 |
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128 void CommitFilesToRemove() |
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129 { |
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130 for (std::list<FileToRemove>::const_iterator |
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131 it = pendingFilesToRemove_.begin(); |
| 656 | 132 it != pendingFilesToRemove_.end(); ++it) |
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133 { |
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134 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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135 } |
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136 } |
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137 |
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138 void CommitChanges() |
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139 { |
| 1196 | 140 for (std::list<ServerIndexChange>::const_iterator |
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141 it = pendingChanges_.begin(); |
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142 it != pendingChanges_.end(); it++) |
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143 { |
| 1198 | 144 context_.SignalChange(*it); |
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145 } |
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146 } |
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147 |
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148 virtual void SignalRemainingAncestor(ResourceType parentType, |
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149 const std::string& publicId) |
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150 { |
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151 LOG(INFO) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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152 |
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153 if (hasRemainingLevel_) |
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154 { |
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155 if (parentType < remainingType_) |
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156 { |
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157 remainingType_ = parentType; |
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158 remainingPublicId_ = publicId; |
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159 } |
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160 } |
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161 else |
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162 { |
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163 hasRemainingLevel_ = true; |
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164 remainingType_ = parentType; |
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165 remainingPublicId_ = publicId; |
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166 } |
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167 } |
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168 |
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169 virtual void SignalFileDeleted(const FileInfo& info) |
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170 { |
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171 assert(Toolbox::IsUuid(info.GetUuid())); |
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172 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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173 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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174 } |
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175 |
| 1198 | 176 virtual void SignalChange(const ServerIndexChange& change) |
| 1158 | 177 { |
| 1198 | 178 LOG(INFO) << "Change related to resource " << change.GetPublicId() << " of type " |
| 179 << EnumerationToString(change.GetResourceType()) << ": " | |
| 180 << EnumerationToString(change.GetChangeType()); | |
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181 |
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182 if (insideTransaction_) |
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183 { |
| 1198 | 184 pendingChanges_.push_back(change); |
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185 } |
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186 else |
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187 { |
| 1198 | 188 context_.SignalChange(change); |
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189 } |
| 1158 | 190 } |
| 191 | |
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192 bool HasRemainingLevel() const |
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193 { |
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194 return hasRemainingLevel_; |
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195 } |
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196 |
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197 ResourceType GetRemainingType() const |
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198 { |
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199 assert(HasRemainingLevel()); |
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200 return remainingType_; |
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201 } |
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202 |
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203 const std::string& GetRemainingPublicId() const |
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204 { |
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205 assert(HasRemainingLevel()); |
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206 return remainingPublicId_; |
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207 } |
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208 }; |
| 0 | 209 } |
| 210 | |
| 211 | |
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212 class ServerIndex::Transaction |
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213 { |
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214 private: |
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215 ServerIndex& index_; |
| 1235 | 216 std::auto_ptr<SQLite::ITransaction> transaction_; |
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217 bool isCommitted_; |
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218 |
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219 public: |
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220 Transaction(ServerIndex& index) : |
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221 index_(index), |
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222 isCommitted_(false) |
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223 { |
| 1247 | 224 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
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225 |
| 1247 | 226 transaction_.reset(index_.db_.StartTransaction()); |
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227 transaction_->Begin(); |
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228 |
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229 index_.listener_->StartTransaction(); |
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230 } |
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231 |
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232 ~Transaction() |
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233 { |
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234 index_.listener_->EndTransaction(); |
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235 } |
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236 |
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237 void Commit(uint64_t sizeOfAddedFiles) |
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238 { |
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239 if (!isCommitted_) |
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240 { |
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241 transaction_->Commit(); |
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242 |
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243 // We can remove the files once the SQLite transaction has |
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244 // been successfully committed. Some files might have to be |
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245 // deleted because of recycling. |
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246 index_.listener_->CommitFilesToRemove(); |
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247 |
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248 index_.currentStorageSize_ += sizeOfAddedFiles; |
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249 |
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250 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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251 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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252 |
| 1247 | 253 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
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254 |
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255 // Send all the pending changes to the Orthanc plugins |
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256 index_.listener_->CommitChanges(); |
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257 |
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258 isCommitted_ = true; |
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259 } |
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260 } |
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261 }; |
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262 |
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263 |
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264 class ServerIndex::UnstableResourcePayload |
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265 { |
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266 private: |
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267 ResourceType type_; |
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268 std::string publicId_; |
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269 boost::posix_time::ptime time_; |
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270 |
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271 public: |
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272 UnstableResourcePayload() : type_(ResourceType_Instance) |
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273 { |
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274 } |
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275 |
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276 UnstableResourcePayload(Orthanc::ResourceType type, |
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277 const std::string& publicId) : |
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278 type_(type), |
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279 publicId_(publicId) |
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280 { |
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281 time_ = boost::posix_time::second_clock::local_time(); |
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282 } |
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283 |
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284 unsigned int GetAge() const |
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285 { |
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286 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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287 } |
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288 |
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289 ResourceType GetResourceType() const |
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290 { |
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291 return type_; |
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292 } |
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293 |
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294 const std::string& GetPublicId() const |
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295 { |
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296 return publicId_; |
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297 } |
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298 }; |
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299 |
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300 |
| 212 | 301 bool ServerIndex::DeleteResource(Json::Value& target, |
| 0 | 302 const std::string& uuid, |
| 202 | 303 ResourceType expectedType) |
| 0 | 304 { |
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305 boost::mutex::scoped_lock lock(mutex_); |
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306 |
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307 Transaction t(*this); |
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308 |
| 202 | 309 int64_t id; |
| 310 ResourceType type; | |
| 1247 | 311 if (!db_.LookupResource(uuid, id, type) || |
| 202 | 312 expectedType != type) |
| 0 | 313 { |
| 314 return false; | |
| 315 } | |
| 202 | 316 |
| 1247 | 317 db_.DeleteResource(id); |
| 0 | 318 |
| 202 | 319 if (listener_->HasRemainingLevel()) |
| 0 | 320 { |
| 202 | 321 ResourceType type = listener_->GetRemainingType(); |
| 322 const std::string& uuid = listener_->GetRemainingPublicId(); | |
| 0 | 323 |
| 324 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
| 204 | 325 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
|
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326 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
| 0 | 327 target["RemainingAncestor"]["ID"] = uuid; |
| 328 } | |
| 329 else | |
| 330 { | |
| 331 target["RemainingAncestor"] = Json::nullValue; | |
| 332 } | |
| 333 | |
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334 t.Commit(0); |
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335 |
| 0 | 336 return true; |
| 337 } | |
| 338 | |
| 339 | |
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340 void ServerIndex::FlushThread(ServerIndex* that) |
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341 { |
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342 // By default, wait for 10 seconds before flushing |
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343 unsigned int sleep = 10; |
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344 |
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345 try |
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346 { |
| 744 | 347 boost::mutex::scoped_lock lock(that->mutex_); |
| 1239 | 348 std::string sleepString; |
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349 |
| 1247 | 350 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
| 1239 | 351 Toolbox::IsInteger(sleepString)) |
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352 { |
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353 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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354 } |
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355 } |
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356 catch (boost::bad_lexical_cast&) |
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357 { |
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358 } |
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359 |
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360 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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361 |
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362 unsigned int count = 0; |
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363 |
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364 while (!that->done_) |
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365 { |
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366 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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367 count++; |
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368 if (count < sleep) |
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369 { |
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370 continue; |
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371 } |
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372 |
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373 boost::mutex::scoped_lock lock(that->mutex_); |
| 1247 | 374 that->db_.FlushToDisk(); |
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375 count = 0; |
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376 } |
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377 |
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378 LOG(INFO) << "Stopping the database flushing thread"; |
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379 } |
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380 |
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381 |
| 1247 | 382 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
| 433 | 383 int64_t series, |
| 384 const DicomMap& dicomSummary) | |
| 385 { | |
| 386 try | |
| 387 { | |
| 656 | 388 const DicomValue* value; |
| 389 const DicomValue* value2; | |
| 390 | |
| 433 | 391 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
| 392 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
| 393 { | |
| 394 // Patch for series with temporal positions thanks to Will Ryder | |
| 395 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->AsString()); | |
| 396 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->AsString()); | |
| 397 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); | |
| 398 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 399 } | |
| 400 | |
| 401 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
| 402 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
| 403 { | |
| 404 // Support of Cardio-PET images | |
| 405 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->AsString()); | |
| 406 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->AsString()); | |
| 407 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); | |
| 408 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 409 } | |
| 410 | |
| 411 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
| 412 { | |
| 413 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->AsString()); | |
| 414 } | |
| 415 } | |
| 416 catch (boost::bad_lexical_cast) | |
| 417 { | |
| 418 } | |
| 419 } | |
| 420 | |
| 421 | |
| 1237 | 422 |
| 423 | |
| 1238 | 424 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
| 1237 | 425 int64_t id, |
| 426 MetadataType type) | |
| 427 { | |
| 1238 | 428 std::string s; |
| 1247 | 429 if (!db_.LookupMetadata(s, id, type)) |
| 1237 | 430 { |
| 431 return false; | |
| 432 } | |
| 433 | |
| 434 try | |
| 435 { | |
| 1238 | 436 result = boost::lexical_cast<int64_t>(s); |
| 1237 | 437 return true; |
| 438 } | |
| 439 catch (boost::bad_lexical_cast&) | |
| 440 { | |
| 441 return false; | |
| 442 } | |
| 443 } | |
| 444 | |
| 445 | |
| 446 | |
| 447 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
| 448 { | |
| 449 std::string oldValue; | |
| 450 | |
| 1247 | 451 if (db_.LookupGlobalProperty(oldValue, property)) |
| 1237 | 452 { |
| 453 uint64_t oldNumber; | |
| 454 | |
| 455 try | |
| 456 { | |
| 457 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
| 1247 | 458 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
| 1237 | 459 return oldNumber + 1; |
| 460 } | |
| 461 catch (boost::bad_lexical_cast&) | |
| 462 { | |
| 463 throw OrthancException(ErrorCode_InternalError); | |
| 464 } | |
| 465 } | |
| 466 else | |
| 467 { | |
| 468 // Initialize the sequence at "1" | |
| 1247 | 469 db_.SetGlobalProperty(property, "1"); |
| 1237 | 470 return 1; |
| 471 } | |
| 472 } | |
| 473 | |
| 474 | |
| 475 | |
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476 ServerIndex::ServerIndex(ServerContext& context, |
| 1247 | 477 IDatabaseWrapper& db) : |
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478 done_(false), |
| 1247 | 479 db_(db), |
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480 maximumStorageSize_(0), |
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481 maximumPatients_(0) |
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482 { |
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483 listener_.reset(new Internals::ServerIndexListener(context)); |
| 1247 | 484 db_.SetListener(*listener_); |
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485 |
| 1247 | 486 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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487 |
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488 // Initial recycling if the parameters have changed since the last |
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489 // execution of Orthanc |
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490 StandaloneRecycling(); |
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491 |
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492 flushThread_ = boost::thread(FlushThread, this); |
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493 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
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494 } |
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495 |
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496 |
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497 ServerIndex::~ServerIndex() |
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498 { |
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499 done_ = true; |
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500 |
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501 if (flushThread_.joinable()) |
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502 { |
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503 flushThread_.join(); |
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504 } |
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505 |
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506 if (unstableResourcesMonitorThread_.joinable()) |
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507 { |
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508 unstableResourcesMonitorThread_.join(); |
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509 } |
| 0 | 510 } |
| 511 | |
| 512 | |
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513 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
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514 const DicomMap& dicomSummary, |
|
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515 const Attachments& attachments, |
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516 const std::string& remoteAet, |
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517 const MetadataMap& metadata) |
| 0 | 518 { |
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519 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 520 |
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521 instanceMetadata.clear(); |
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522 |
| 178 | 523 DicomInstanceHasher hasher(dicomSummary); |
| 0 | 524 |
| 525 try | |
| 526 { | |
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527 Transaction t(*this); |
| 0 | 528 |
| 202 | 529 // Do nothing if the instance already exists |
| 0 | 530 { |
| 432 | 531 ResourceType type; |
| 532 int64_t tmp; | |
| 1247 | 533 if (db_.LookupResource(hasher.HashInstance(), tmp, type)) |
| 432 | 534 { |
| 535 assert(type == ResourceType_Instance); | |
| 1247 | 536 db_.GetAllMetadata(instanceMetadata, tmp); |
| 432 | 537 return StoreStatus_AlreadyStored; |
| 538 } | |
| 0 | 539 } |
| 540 | |
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541 // Ensure there is enough room in the storage for the new instance |
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542 uint64_t instanceSize = 0; |
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543 for (Attachments::const_iterator it = attachments.begin(); |
| 656 | 544 it != attachments.end(); ++it) |
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545 { |
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546 instanceSize += it->GetCompressedSize(); |
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547 } |
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548 |
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549 Recycle(instanceSize, hasher.HashPatient()); |
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550 |
| 202 | 551 // Create the instance |
| 1247 | 552 int64_t instance = db_.CreateResource(hasher.HashInstance(), ResourceType_Instance); |
| 202 | 553 |
| 554 DicomMap dicom; | |
| 555 dicomSummary.ExtractInstanceInformation(dicom); | |
| 1247 | 556 db_.SetMainDicomTags(instance, dicom); |
| 202 | 557 |
| 432 | 558 // Detect up to which level the patient/study/series/instance |
| 559 // hierarchy must be created | |
| 560 int64_t patient = -1, study = -1, series = -1; | |
| 561 bool isNewPatient = false; | |
| 562 bool isNewStudy = false; | |
| 563 bool isNewSeries = false; | |
| 564 | |
| 0 | 565 { |
| 432 | 566 ResourceType dummy; |
| 567 | |
| 1247 | 568 if (db_.LookupResource(hasher.HashSeries(), series, dummy)) |
| 432 | 569 { |
| 570 assert(dummy == ResourceType_Series); | |
| 571 // The patient, the study and the series already exist | |
| 572 | |
| 1247 | 573 bool ok = (db_.LookupResource(hasher.HashPatient(), patient, dummy) && |
| 574 db_.LookupResource(hasher.HashStudy(), study, dummy)); | |
| 432 | 575 assert(ok); |
| 576 } | |
| 1247 | 577 else if (db_.LookupResource(hasher.HashStudy(), study, dummy)) |
| 432 | 578 { |
| 579 assert(dummy == ResourceType_Study); | |
| 580 | |
| 581 // New series: The patient and the study already exist | |
| 582 isNewSeries = true; | |
| 583 | |
| 1247 | 584 bool ok = db_.LookupResource(hasher.HashPatient(), patient, dummy); |
| 432 | 585 assert(ok); |
| 586 } | |
| 1247 | 587 else if (db_.LookupResource(hasher.HashPatient(), patient, dummy)) |
| 432 | 588 { |
| 589 assert(dummy == ResourceType_Patient); | |
| 590 | |
| 591 // New study and series: The patient already exist | |
| 592 isNewStudy = true; | |
| 593 isNewSeries = true; | |
| 594 } | |
| 595 else | |
| 596 { | |
| 597 // New patient, study and series: Nothing exists | |
| 598 isNewPatient = true; | |
| 599 isNewStudy = true; | |
| 600 isNewSeries = true; | |
| 601 } | |
| 602 } | |
| 603 | |
| 604 // Create the series if needed | |
| 605 if (isNewSeries) | |
| 606 { | |
| 1247 | 607 series = db_.CreateResource(hasher.HashSeries(), ResourceType_Series); |
| 202 | 608 dicomSummary.ExtractSeriesInformation(dicom); |
| 1247 | 609 db_.SetMainDicomTags(series, dicom); |
| 432 | 610 } |
| 202 | 611 |
| 432 | 612 // Create the study if needed |
| 613 if (isNewStudy) | |
| 614 { | |
| 1247 | 615 study = db_.CreateResource(hasher.HashStudy(), ResourceType_Study); |
| 432 | 616 dicomSummary.ExtractStudyInformation(dicom); |
| 1247 | 617 db_.SetMainDicomTags(study, dicom); |
| 432 | 618 } |
| 619 | |
| 620 // Create the patient if needed | |
| 621 if (isNewPatient) | |
| 622 { | |
| 1247 | 623 patient = db_.CreateResource(hasher.HashPatient(), ResourceType_Patient); |
| 432 | 624 dicomSummary.ExtractPatientInformation(dicom); |
| 1247 | 625 db_.SetMainDicomTags(patient, dicom); |
| 432 | 626 } |
| 202 | 627 |
| 432 | 628 // Create the parent-to-child links |
| 1247 | 629 db_.AttachChild(series, instance); |
| 432 | 630 |
| 631 if (isNewSeries) | |
| 632 { | |
| 1247 | 633 db_.AttachChild(study, series); |
| 0 | 634 } |
| 432 | 635 |
| 636 if (isNewStudy) | |
| 0 | 637 { |
| 1247 | 638 db_.AttachChild(patient, study); |
| 0 | 639 } |
| 640 | |
| 432 | 641 // Sanity checks |
| 642 assert(patient != -1); | |
| 643 assert(study != -1); | |
| 644 assert(series != -1); | |
| 645 assert(instance != -1); | |
| 646 | |
| 202 | 647 // Attach the files to the newly created instance |
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648 for (Attachments::const_iterator it = attachments.begin(); |
| 656 | 649 it != attachments.end(); ++it) |
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650 { |
| 1247 | 651 db_.AddAttachment(instance, *it); |
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652 } |
| 202 | 653 |
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654 // Attach the user-specified metadata |
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655 for (MetadataMap::const_iterator |
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656 it = metadata.begin(); it != metadata.end(); ++it) |
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657 { |
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658 switch (it->first.first) |
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659 { |
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660 case ResourceType_Patient: |
| 1247 | 661 db_.SetMetadata(patient, it->first.second, it->second); |
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662 break; |
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663 |
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664 case ResourceType_Study: |
| 1247 | 665 db_.SetMetadata(study, it->first.second, it->second); |
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666 break; |
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667 |
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668 case ResourceType_Series: |
| 1247 | 669 db_.SetMetadata(series, it->first.second, it->second); |
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670 break; |
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671 |
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672 case ResourceType_Instance: |
| 1247 | 673 db_.SetMetadata(instance, it->first.second, it->second); |
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674 instanceMetadata[it->first.second] = it->second; |
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675 break; |
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676 |
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677 default: |
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678 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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679 } |
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680 } |
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681 |
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682 // Attach the auto-computed metadata for the patient/study/series levels |
| 432 | 683 std::string now = Toolbox::GetNowIsoString(); |
| 1247 | 684 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
| 685 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
| 686 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
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687 |
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688 // Attach the auto-computed metadata for the instance level, |
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689 // reflecting these additions into the input metadata map |
| 1247 | 690 db_.SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); |
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691 instanceMetadata[MetadataType_Instance_ReceptionDate] = now; |
| 202 | 692 |
| 1247 | 693 db_.SetMetadata(instance, MetadataType_Instance_RemoteAet, remoteAet); |
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694 instanceMetadata[MetadataType_Instance_RemoteAet] = remoteAet; |
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695 |
| 202 | 696 const DicomValue* value; |
| 697 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
| 698 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
| 0 | 699 { |
| 1247 | 700 db_.SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->AsString()); |
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701 instanceMetadata[MetadataType_Instance_IndexInSeries] = value->AsString(); |
| 0 | 702 } |
| 703 | |
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704 // Check whether the series of this new instance is now completed |
| 202 | 705 if (isNewSeries) |
| 706 { | |
| 1247 | 707 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
| 202 | 708 } |
| 709 | |
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710 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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711 if (seriesStatus == SeriesStatus_Complete) |
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712 { |
| 1237 | 713 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
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714 } |
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715 |
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716 // Mark the parent resources of this instance as unstable |
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717 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
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718 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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719 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
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720 |
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721 t.Commit(instanceSize); |
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722 |
| 0 | 723 return StoreStatus_Success; |
| 724 } | |
| 62 | 725 catch (OrthancException& e) |
| 0 | 726 { |
| 1247 | 727 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
| 0 | 728 } |
| 729 | |
| 730 return StoreStatus_Failure; | |
| 731 } | |
| 732 | |
| 733 | |
| 238 | 734 void ServerIndex::ComputeStatistics(Json::Value& target) |
| 0 | 735 { |
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736 boost::mutex::scoped_lock lock(mutex_); |
| 238 | 737 target = Json::objectValue; |
| 0 | 738 |
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739 uint64_t cs = currentStorageSize_; |
| 1247 | 740 assert(cs == db_.GetTotalCompressedSize()); |
| 741 uint64_t us = db_.GetTotalUncompressedSize(); | |
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742 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
| 238 | 743 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
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744 target["TotalDiskSizeMB"] = boost::lexical_cast<unsigned int>(cs / MEGA_BYTES); |
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745 target["TotalUncompressedSizeMB"] = boost::lexical_cast<unsigned int>(us / MEGA_BYTES); |
| 238 | 746 |
| 1247 | 747 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
| 748 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
| 749 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
| 750 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
| 238 | 751 } |
| 752 | |
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753 |
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754 |
| 585 | 755 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
| 199 | 756 { |
| 757 // Get the expected number of instances in this series (from the metadata) | |
| 1238 | 758 int64_t expected; |
| 759 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
| 199 | 760 { |
| 761 return SeriesStatus_Unknown; | |
| 762 } | |
| 763 | |
| 764 // Loop over the instances of this series | |
| 765 std::list<int64_t> children; | |
| 1247 | 766 db_.GetChildrenInternalId(children, id); |
| 199 | 767 |
| 1238 | 768 std::set<int64_t> instances; |
| 199 | 769 for (std::list<int64_t>::const_iterator |
| 656 | 770 it = children.begin(); it != children.end(); ++it) |
| 199 | 771 { |
| 772 // Get the index of this instance in the series | |
| 1238 | 773 int64_t index; |
| 774 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
| 199 | 775 { |
| 776 return SeriesStatus_Unknown; | |
| 777 } | |
| 778 | |
| 656 | 779 if (!(index > 0 && index <= expected)) |
| 199 | 780 { |
| 781 // Out-of-range instance index | |
| 782 return SeriesStatus_Inconsistent; | |
| 783 } | |
| 784 | |
| 785 if (instances.find(index) != instances.end()) | |
| 786 { | |
| 787 // Twice the same instance index | |
| 788 return SeriesStatus_Inconsistent; | |
| 789 } | |
| 790 | |
| 791 instances.insert(index); | |
| 792 } | |
| 793 | |
| 1238 | 794 if (static_cast<int64_t>(instances.size()) == expected) |
| 199 | 795 { |
| 796 return SeriesStatus_Complete; | |
| 797 } | |
| 798 else | |
| 799 { | |
| 800 return SeriesStatus_Missing; | |
| 801 } | |
| 802 } | |
| 803 | |
| 804 | |
| 805 | |
| 202 | 806 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
| 807 int64_t resourceId) | |
|
198
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808 { |
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809 DicomMap tags; |
| 1247 | 810 db_.GetMainDicomTags(tags, resourceId); |
|
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811 target["MainDicomTags"] = Json::objectValue; |
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812 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags); |
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813 } |
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|
814 |
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|
815 bool ServerIndex::LookupResource(Json::Value& result, |
| 199 | 816 const std::string& publicId, |
| 817 ResourceType expectedType) | |
|
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818 { |
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819 result = Json::objectValue; |
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820 |
|
206
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flush to disk thread
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821 boost::mutex::scoped_lock lock(mutex_); |
| 199 | 822 |
|
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823 // Lookup for the requested resource |
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824 int64_t id; |
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825 ResourceType type; |
| 1247 | 826 if (!db_.LookupResource(publicId, id, type) || |
| 199 | 827 type != expectedType) |
|
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828 { |
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829 return false; |
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830 } |
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|
831 |
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832 // Find the parent resource (if it exists) |
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833 if (type != ResourceType_Patient) |
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834 { |
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835 int64_t parentId; |
| 1247 | 836 if (!db_.LookupParent(parentId, id)) |
|
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837 { |
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838 throw OrthancException(ErrorCode_InternalError); |
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839 } |
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840 |
| 1247 | 841 std::string parent = db_.GetPublicId(parentId); |
|
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842 |
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843 switch (type) |
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844 { |
|
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845 case ResourceType_Study: |
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846 result["ParentPatient"] = parent; |
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847 break; |
|
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848 |
|
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849 case ResourceType_Series: |
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850 result["ParentStudy"] = parent; |
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851 break; |
|
198
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|
852 |
|
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853 case ResourceType_Instance: |
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854 result["ParentSeries"] = parent; |
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855 break; |
|
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|
856 |
|
269
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857 default: |
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858 throw OrthancException(ErrorCode_InternalError); |
|
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859 } |
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860 } |
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|
861 |
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862 // List the children resources |
|
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|
863 std::list<std::string> children; |
| 1247 | 864 db_.GetChildrenPublicId(children, id); |
|
198
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|
865 |
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|
866 if (type != ResourceType_Instance) |
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|
867 { |
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|
868 Json::Value c = Json::arrayValue; |
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|
869 |
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870 for (std::list<std::string>::const_iterator |
| 656 | 871 it = children.begin(); it != children.end(); ++it) |
|
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|
872 { |
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|
873 c.append(*it); |
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874 } |
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|
875 |
|
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|
876 switch (type) |
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|
877 { |
|
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|
878 case ResourceType_Patient: |
|
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|
879 result["Studies"] = c; |
|
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|
880 break; |
|
198
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|
881 |
|
269
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|
882 case ResourceType_Study: |
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|
883 result["Series"] = c; |
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|
884 break; |
|
198
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|
885 |
|
269
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|
886 case ResourceType_Series: |
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|
887 result["Instances"] = c; |
|
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|
888 break; |
|
198
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|
889 |
|
269
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|
890 default: |
|
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|
891 throw OrthancException(ErrorCode_InternalError); |
|
198
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|
892 } |
|
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|
893 } |
|
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|
894 |
|
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|
895 // Set the resource type |
|
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|
896 switch (type) |
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|
897 { |
|
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|
898 case ResourceType_Patient: |
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|
899 result["Type"] = "Patient"; |
|
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|
900 break; |
|
198
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|
901 |
|
269
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|
902 case ResourceType_Study: |
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|
903 result["Type"] = "Study"; |
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|
904 break; |
| 199 | 905 |
|
269
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|
906 case ResourceType_Series: |
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|
907 { |
|
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|
908 result["Type"] = "Series"; |
|
434
ccf3a0a43dac
EnumerationDictionary
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|
909 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
|
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|
910 |
| 1238 | 911 int64_t i; |
| 1237 | 912 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
| 1238 | 913 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
|
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|
914 else |
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|
915 result["ExpectedNumberOfInstances"] = Json::nullValue; |
|
200
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|
916 |
|
269
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|
917 break; |
|
200
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|
918 } |
|
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|
919 |
|
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|
920 case ResourceType_Instance: |
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|
921 { |
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|
922 result["Type"] = "Instance"; |
|
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|
923 |
|
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|
924 FileInfo attachment; |
| 1247 | 925 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
|
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|
926 { |
|
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|
927 throw OrthancException(ErrorCode_InternalError); |
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|
928 } |
|
200
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|
929 |
|
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|
930 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
|
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|
931 result["FileUuid"] = attachment.GetUuid(); |
|
200
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|
932 |
| 1238 | 933 int64_t i; |
| 1237 | 934 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
| 1238 | 935 result["IndexInSeries"] = static_cast<int>(i); |
|
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|
936 else |
|
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|
937 result["IndexInSeries"] = Json::nullValue; |
|
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938 |
|
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939 break; |
|
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940 } |
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941 |
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942 default: |
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943 throw OrthancException(ErrorCode_InternalError); |
|
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944 } |
|
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945 |
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946 // Record the remaining information |
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947 result["ID"] = publicId; |
| 202 | 948 MainDicomTagsToJson(result, id); |
|
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|
949 |
| 315 | 950 std::string tmp; |
| 951 | |
| 1247 | 952 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
| 1236 | 953 { |
| 315 | 954 result["AnonymizedFrom"] = tmp; |
| 1236 | 955 } |
| 315 | 956 |
| 1247 | 957 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
| 1236 | 958 { |
| 315 | 959 result["ModifiedFrom"] = tmp; |
| 1236 | 960 } |
| 315 | 961 |
|
511
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|
962 if (type == ResourceType_Patient || |
|
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963 type == ResourceType_Study || |
|
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964 type == ResourceType_Series) |
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|
965 { |
|
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|
966 result["IsStable"] = !unstableResources_.Contains(id); |
|
1148
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|
967 |
| 1247 | 968 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
| 1236 | 969 { |
|
1148
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970 result["LastUpdate"] = tmp; |
| 1236 | 971 } |
|
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|
972 } |
|
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|
973 |
|
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974 return true; |
|
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975 } |
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976 |
| 0 | 977 |
|
232
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|
978 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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979 const std::string& instanceUuid, |
| 233 | 980 FileContentType contentType) |
| 0 | 981 { |
|
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982 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 983 |
|
193
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984 int64_t id; |
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985 ResourceType type; |
| 1247 | 986 if (!db_.LookupResource(instanceUuid, id, type)) |
|
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987 { |
|
1113
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|
988 throw OrthancException(ErrorCode_UnknownResource); |
|
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989 } |
|
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|
990 |
| 1247 | 991 if (db_.LookupAttachment(attachment, id, contentType)) |
|
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992 { |
| 233 | 993 assert(attachment.GetContentType() == contentType); |
|
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994 return true; |
|
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|
995 } |
|
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|
996 else |
|
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|
997 { |
|
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|
998 return false; |
|
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|
999 } |
|
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|
1000 } |
|
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|
1001 |
|
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|
1002 |
|
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|
1003 |
| 0 | 1004 void ServerIndex::GetAllUuids(Json::Value& target, |
| 190 | 1005 ResourceType resourceType) |
| 0 | 1006 { |
| 1241 | 1007 std::list<std::string> lst; |
| 1008 | |
| 1009 { | |
| 1010 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1011 db_.GetAllPublicIds(lst, resourceType); |
| 1241 | 1012 } |
| 1013 | |
| 1014 target = Json::arrayValue; | |
| 1015 for (std::list<std::string>::const_iterator | |
| 1016 it = lst.begin(); it != lst.end(); it++) | |
| 1017 { | |
| 1018 target.append(*it); | |
| 1019 } | |
| 0 | 1020 } |
| 1021 | |
| 1022 | |
| 1244 | 1023 template <typename T> |
| 1024 static void FormatLog(Json::Value& target, | |
| 1025 const std::list<T>& log, | |
| 1026 const std::string& name, | |
| 1027 bool done, | |
| 1028 int64_t since) | |
| 1240 | 1029 { |
| 1030 Json::Value items = Json::arrayValue; | |
| 1244 | 1031 for (typename std::list<T>::const_iterator |
| 1032 it = log.begin(); it != log.end(); it++) | |
| 1240 | 1033 { |
| 1034 Json::Value item; | |
| 1035 it->Format(item); | |
| 1036 items.append(item); | |
| 1037 } | |
| 1038 | |
| 1039 target = Json::objectValue; | |
| 1244 | 1040 target[name] = items; |
| 1240 | 1041 target["Done"] = done; |
| 1042 | |
| 1244 | 1043 int64_t last = (log.size() == 0 ? since : log.back().GetSeq()); |
| 1240 | 1044 target["Last"] = static_cast<int>(last); |
| 1045 } | |
| 1046 | |
| 1047 | |
| 1247 | 1048 void ServerIndex::GetChanges(Json::Value& target, |
| 204 | 1049 int64_t since, |
| 0 | 1050 unsigned int maxResults) |
| 1051 { | |
| 1240 | 1052 std::list<ServerIndexChange> changes; |
| 1053 bool done; | |
| 1054 | |
| 1055 { | |
| 1056 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1057 db_.GetChanges(changes, done, since, maxResults); |
| 1240 | 1058 } |
| 1059 | |
| 1244 | 1060 FormatLog(target, changes, "Changes", done, since); |
|
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1061 } |
| 0 | 1062 |
| 1240 | 1063 |
| 1247 | 1064 void ServerIndex::GetLastChange(Json::Value& target) |
|
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1065 { |
| 1240 | 1066 std::list<ServerIndexChange> changes; |
| 1067 | |
| 1068 { | |
| 1069 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1070 db_.GetLastChange(changes); |
| 1240 | 1071 } |
| 1072 | |
| 1244 | 1073 FormatLog(target, changes, "Changes", true, 0); |
| 0 | 1074 } |
| 231 | 1075 |
| 1240 | 1076 |
| 231 | 1077 void ServerIndex::LogExportedResource(const std::string& publicId, |
| 1078 const std::string& remoteModality) | |
| 1079 { | |
| 1080 boost::mutex::scoped_lock lock(mutex_); | |
| 1081 | |
| 1082 int64_t id; | |
| 1083 ResourceType type; | |
| 1247 | 1084 if (!db_.LookupResource(publicId, id, type)) |
| 231 | 1085 { |
| 1086 throw OrthancException(ErrorCode_InternalError); | |
| 1087 } | |
| 1088 | |
| 1089 std::string patientId; | |
| 1090 std::string studyInstanceUid; | |
| 1091 std::string seriesInstanceUid; | |
| 1092 std::string sopInstanceUid; | |
| 1093 | |
| 1094 int64_t currentId = id; | |
| 1095 ResourceType currentType = type; | |
| 1096 | |
| 1097 // Iteratively go up inside the patient/study/series/instance hierarchy | |
| 1098 bool done = false; | |
| 1099 while (!done) | |
| 1100 { | |
| 1101 DicomMap map; | |
| 1247 | 1102 db_.GetMainDicomTags(map, currentId); |
| 231 | 1103 |
| 1104 switch (currentType) | |
| 1105 { | |
|
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1106 case ResourceType_Patient: |
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1107 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).AsString(); |
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1108 done = true; |
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|
1109 break; |
| 231 | 1110 |
|
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1111 case ResourceType_Study: |
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1112 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString(); |
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1113 currentType = ResourceType_Patient; |
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1114 break; |
| 231 | 1115 |
|
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1116 case ResourceType_Series: |
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1117 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString(); |
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1118 currentType = ResourceType_Study; |
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|
1119 break; |
| 231 | 1120 |
|
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1121 case ResourceType_Instance: |
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1122 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).AsString(); |
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1123 currentType = ResourceType_Series; |
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1124 break; |
| 231 | 1125 |
|
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1126 default: |
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1127 throw OrthancException(ErrorCode_InternalError); |
| 231 | 1128 } |
| 1129 | |
| 1130 // If we have not reached the Patient level, find the parent of | |
| 1131 // the current resource | |
| 1132 if (!done) | |
| 1133 { | |
| 1247 | 1134 bool ok = db_.LookupParent(currentId, currentId); |
|
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1135 assert(ok); |
| 231 | 1136 } |
| 1137 } | |
| 1138 | |
| 1235 | 1139 // No need for a SQLite::ITransaction here, as we only insert 1 record |
| 1246 | 1140 ExportedResource resource(-1, |
| 1141 type, | |
| 1142 publicId, | |
| 1143 remoteModality, | |
| 1144 Toolbox::GetNowIsoString(), | |
| 1145 patientId, | |
| 1146 studyInstanceUid, | |
| 1147 seriesInstanceUid, | |
| 1148 sopInstanceUid); | |
| 1247 | 1149 db_.LogExportedResource(resource); |
| 231 | 1150 } |
| 1151 | |
| 1152 | |
| 1247 | 1153 void ServerIndex::GetExportedResources(Json::Value& target, |
| 231 | 1154 int64_t since, |
| 1155 unsigned int maxResults) | |
| 1156 { | |
| 1244 | 1157 std::list<ExportedResource> exported; |
| 1158 bool done; | |
| 1159 | |
| 1160 { | |
| 1161 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1162 db_.GetExportedResources(exported, done, since, maxResults); |
| 1244 | 1163 } |
| 1164 | |
| 1165 FormatLog(target, exported, "Exports", done, since); | |
| 231 | 1166 } |
|
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1167 |
| 1244 | 1168 |
| 1247 | 1169 void ServerIndex::GetLastExportedResource(Json::Value& target) |
|
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|
1170 { |
| 1244 | 1171 std::list<ExportedResource> exported; |
| 1172 | |
| 1173 { | |
| 1174 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1175 db_.GetLastExportedResource(exported); |
| 1244 | 1176 } |
| 1177 | |
| 1178 FormatLog(target, exported, "Exports", true, 0); | |
|
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1179 } |
|
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1180 |
|
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1181 |
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1182 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
|
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1183 { |
|
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1184 if (maximumStorageSize_ != 0) |
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1185 { |
|
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|
1186 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
| 1247 | 1187 assert(db_.GetTotalCompressedSize() == currentSize); |
|
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1188 |
|
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|
1189 if (currentSize + instanceSize > maximumStorageSize_) |
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1190 { |
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1191 return true; |
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1192 } |
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1193 } |
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1194 |
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1195 if (maximumPatients_ != 0) |
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1196 { |
| 1247 | 1197 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1198 if (patientCount > maximumPatients_) |
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1199 { |
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1200 return true; |
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1201 } |
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1202 } |
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1203 |
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1204 return false; |
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1205 } |
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1206 |
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1207 |
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1208 void ServerIndex::Recycle(uint64_t instanceSize, |
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1209 const std::string& newPatientId) |
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1210 { |
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1211 if (!IsRecyclingNeeded(instanceSize)) |
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1212 { |
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1213 return; |
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1214 } |
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1215 |
|
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1216 // Check whether other DICOM instances from this patient are |
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1217 // already stored |
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1218 int64_t patientToAvoid; |
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1219 ResourceType type; |
| 1247 | 1220 bool hasPatientToAvoid = db_.LookupResource(newPatientId, patientToAvoid, type); |
|
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1221 |
|
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1222 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1223 { |
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1224 throw OrthancException(ErrorCode_InternalError); |
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1225 } |
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1226 |
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1227 // Iteratively select patient to remove until there is enough |
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1228 // space in the DICOM store |
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1229 int64_t patientToRecycle; |
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1230 while (true) |
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1231 { |
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1232 // If other instances of this patient are already in the store, |
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1233 // we must avoid to recycle them |
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1234 bool ok = hasPatientToAvoid ? |
| 1247 | 1235 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
| 1236 db_.SelectPatientToRecycle(patientToRecycle); | |
|
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1237 |
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1238 if (!ok) |
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1239 { |
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1240 throw OrthancException(ErrorCode_FullStorage); |
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1241 } |
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1242 |
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1243 LOG(INFO) << "Recycling one patient"; |
| 1247 | 1244 db_.DeleteResource(patientToRecycle); |
|
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1245 |
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1246 if (!IsRecyclingNeeded(instanceSize)) |
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1247 { |
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1248 // OK, we're done |
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1249 break; |
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1250 } |
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1251 } |
|
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1252 } |
|
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1253 |
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1254 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1255 { |
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1256 boost::mutex::scoped_lock lock(mutex_); |
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1257 maximumPatients_ = count; |
|
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1258 |
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1259 if (count == 0) |
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1260 { |
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1261 LOG(WARNING) << "No limit on the number of stored patients"; |
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1262 } |
|
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1263 else |
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1264 { |
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1265 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1266 } |
|
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|
1267 |
|
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1268 StandaloneRecycling(); |
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1269 } |
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1270 |
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1271 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1272 { |
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1273 boost::mutex::scoped_lock lock(mutex_); |
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1274 maximumStorageSize_ = size; |
|
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1275 |
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1276 if (size == 0) |
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1277 { |
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1278 LOG(WARNING) << "No limit on the size of the storage area"; |
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1279 } |
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1280 else |
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1281 { |
|
440
23e5b35e3c5c
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|
1282 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
|
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1283 } |
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1284 |
|
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1285 StandaloneRecycling(); |
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1286 } |
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1287 |
|
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1288 void ServerIndex::StandaloneRecycling() |
|
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1289 { |
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1290 // WARNING: No mutex here, do not include this as a public method |
|
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1291 Transaction t(*this); |
|
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1292 Recycle(0, ""); |
|
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1293 t.Commit(0); |
|
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1294 } |
|
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1295 |
|
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1296 |
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1297 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1298 { |
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1299 boost::mutex::scoped_lock lock(mutex_); |
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1300 |
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1301 // Lookup for the requested resource |
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1302 int64_t id; |
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1303 ResourceType type; |
| 1247 | 1304 if (!db_.LookupResource(publicId, id, type) || |
|
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1305 type != ResourceType_Patient) |
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1306 { |
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1307 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1308 } |
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1309 |
| 1247 | 1310 return db_.IsProtectedPatient(id); |
|
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1311 } |
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1312 |
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1313 |
|
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1314 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1315 bool isProtected) |
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1316 { |
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1317 boost::mutex::scoped_lock lock(mutex_); |
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1318 |
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1319 // Lookup for the requested resource |
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1320 int64_t id; |
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1321 ResourceType type; |
| 1247 | 1322 if (!db_.LookupResource(publicId, id, type) || |
|
272
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1323 type != ResourceType_Patient) |
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1324 { |
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1325 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1326 } |
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1327 |
| 1235 | 1328 // No need for a SQLite::ITransaction here, as we only make 1 write to the DB |
| 1247 | 1329 db_.SetProtectedPatient(id, isProtected); |
|
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1330 |
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1331 if (isProtected) |
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1332 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1333 else |
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1334 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1335 } |
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1336 |
| 304 | 1337 |
|
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1338 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1339 const std::string& publicId) |
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1340 { |
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1341 result.clear(); |
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1342 |
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1343 boost::mutex::scoped_lock lock(mutex_); |
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1344 |
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1345 ResourceType type; |
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1346 int64_t resource; |
| 1247 | 1347 if (!db_.LookupResource(publicId, resource, type)) |
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1348 { |
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1349 throw OrthancException(ErrorCode_UnknownResource); |
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1350 } |
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1351 |
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1352 if (type == ResourceType_Instance) |
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1353 { |
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1354 // An instance cannot have a child |
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1355 throw OrthancException(ErrorCode_BadParameterType); |
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1356 } |
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1357 |
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1358 std::list<int64_t> tmp; |
| 1247 | 1359 db_.GetChildrenInternalId(tmp, resource); |
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1360 |
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1361 for (std::list<int64_t>::const_iterator |
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1362 it = tmp.begin(); it != tmp.end(); ++it) |
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1363 { |
| 1247 | 1364 result.push_back(db_.GetPublicId(*it)); |
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1365 } |
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1366 } |
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1367 |
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1368 |
| 304 | 1369 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
| 1370 const std::string& publicId) | |
| 1371 { | |
| 1372 result.clear(); | |
| 1373 | |
| 1374 boost::mutex::scoped_lock lock(mutex_); | |
| 1375 | |
| 1376 ResourceType type; | |
| 1377 int64_t top; | |
| 1247 | 1378 if (!db_.LookupResource(publicId, top, type)) |
| 304 | 1379 { |
| 1380 throw OrthancException(ErrorCode_UnknownResource); | |
| 1381 } | |
| 1382 | |
| 1383 if (type == ResourceType_Instance) | |
| 1384 { | |
| 1385 // The resource is already an instance: Do not go down the hierarchy | |
| 1386 result.push_back(publicId); | |
| 1387 return; | |
| 1388 } | |
| 1389 | |
| 1390 std::stack<int64_t> toExplore; | |
| 1391 toExplore.push(top); | |
| 1392 | |
| 1393 std::list<int64_t> tmp; | |
| 1394 | |
| 1395 while (!toExplore.empty()) | |
| 1396 { | |
| 1397 // Get the internal ID of the current resource | |
| 1398 int64_t resource = toExplore.top(); | |
| 1399 toExplore.pop(); | |
| 1400 | |
| 1247 | 1401 if (db_.GetResourceType(resource) == ResourceType_Instance) |
| 304 | 1402 { |
| 1247 | 1403 result.push_back(db_.GetPublicId(resource)); |
| 304 | 1404 } |
| 1405 else | |
| 1406 { | |
| 1407 // Tag all the children of this resource as to be explored | |
| 1247 | 1408 db_.GetChildrenInternalId(tmp, resource); |
| 304 | 1409 for (std::list<int64_t>::const_iterator |
| 656 | 1410 it = tmp.begin(); it != tmp.end(); ++it) |
| 304 | 1411 { |
| 1412 toExplore.push(*it); | |
| 1413 } | |
| 1414 } | |
| 1415 } | |
| 1416 } | |
| 1417 | |
|
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1418 |
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1419 void ServerIndex::SetMetadata(const std::string& publicId, |
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1420 MetadataType type, |
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1421 const std::string& value) |
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1422 { |
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1423 boost::mutex::scoped_lock lock(mutex_); |
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1424 |
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1425 ResourceType rtype; |
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1426 int64_t id; |
| 1247 | 1427 if (!db_.LookupResource(publicId, id, rtype)) |
|
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1428 { |
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1429 throw OrthancException(ErrorCode_UnknownResource); |
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1430 } |
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1431 |
| 1247 | 1432 db_.SetMetadata(id, type, value); |
|
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1433 } |
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1434 |
| 438 | 1435 |
| 1436 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
| 1437 MetadataType type) | |
| 1438 { | |
| 1439 boost::mutex::scoped_lock lock(mutex_); | |
| 1440 | |
| 1441 ResourceType rtype; | |
| 1442 int64_t id; | |
| 1247 | 1443 if (!db_.LookupResource(publicId, id, rtype)) |
| 438 | 1444 { |
| 1445 throw OrthancException(ErrorCode_UnknownResource); | |
| 1446 } | |
| 1447 | |
| 1247 | 1448 db_.DeleteMetadata(id, type); |
| 438 | 1449 } |
| 1450 | |
| 1451 | |
|
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1452 bool ServerIndex::LookupMetadata(std::string& target, |
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1453 const std::string& publicId, |
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1454 MetadataType type) |
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1455 { |
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1456 boost::mutex::scoped_lock lock(mutex_); |
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1457 |
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1458 ResourceType rtype; |
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1459 int64_t id; |
| 1247 | 1460 if (!db_.LookupResource(publicId, id, rtype)) |
|
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1461 { |
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1462 throw OrthancException(ErrorCode_UnknownResource); |
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1463 } |
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1464 |
| 1247 | 1465 return db_.LookupMetadata(target, id, type); |
|
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1466 } |
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1467 |
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1468 |
| 739 | 1469 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
|
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1470 const std::string& publicId) |
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1471 { |
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1472 boost::mutex::scoped_lock lock(mutex_); |
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1473 |
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1474 ResourceType rtype; |
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1475 int64_t id; |
| 1247 | 1476 if (!db_.LookupResource(publicId, id, rtype)) |
|
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1477 { |
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1478 throw OrthancException(ErrorCode_UnknownResource); |
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1479 } |
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1480 |
| 1247 | 1481 db_.ListAvailableMetadata(target, id); |
|
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1482 } |
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1483 |
|
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1484 |
|
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1485 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
|
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|
1486 const std::string& publicId, |
|
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|
1487 ResourceType expectedType) |
|
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|
1488 { |
|
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|
1489 boost::mutex::scoped_lock lock(mutex_); |
|
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1490 |
|
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|
1491 ResourceType type; |
|
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|
1492 int64_t id; |
| 1247 | 1493 if (!db_.LookupResource(publicId, id, type) || |
|
697
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|
1494 expectedType != type) |
|
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|
1495 { |
|
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|
1496 throw OrthancException(ErrorCode_UnknownResource); |
|
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|
1497 } |
|
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|
1498 |
| 1247 | 1499 db_.ListAvailableAttachments(target, id); |
|
697
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|
1500 } |
|
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|
1501 |
|
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|
1502 |
|
306
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|
1503 bool ServerIndex::LookupParent(std::string& target, |
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1504 const std::string& publicId) |
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1505 { |
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|
1506 boost::mutex::scoped_lock lock(mutex_); |
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1507 |
|
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1508 ResourceType type; |
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1509 int64_t id; |
| 1247 | 1510 if (!db_.LookupResource(publicId, id, type)) |
|
306
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1511 { |
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1512 throw OrthancException(ErrorCode_UnknownResource); |
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1513 } |
|
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1514 |
|
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|
1515 int64_t parentId; |
| 1247 | 1516 if (db_.LookupParent(parentId, id)) |
|
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1517 { |
| 1247 | 1518 target = db_.GetPublicId(parentId); |
|
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1519 return true; |
|
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1520 } |
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1521 else |
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1522 { |
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|
1523 return false; |
|
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1524 } |
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1525 } |
| 310 | 1526 |
| 1527 | |
| 1528 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
| 1529 { | |
| 1530 boost::mutex::scoped_lock lock(mutex_); | |
| 311 | 1531 |
| 1247 | 1532 std::auto_ptr<SQLite::ITransaction> transaction(db_.StartTransaction()); |
| 311 | 1533 |
| 1534 transaction->Begin(); | |
| 1237 | 1535 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
| 311 | 1536 transaction->Commit(); |
| 1537 | |
| 1538 return seq; | |
| 310 | 1539 } |
| 315 | 1540 |
| 1541 | |
| 1542 | |
| 1543 void ServerIndex::LogChange(ChangeType changeType, | |
| 1544 const std::string& publicId) | |
| 1545 { | |
| 1546 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1547 std::auto_ptr<SQLite::ITransaction> transaction(db_.StartTransaction()); |
| 315 | 1548 transaction->Begin(); |
| 1549 | |
| 1550 int64_t id; | |
| 1551 ResourceType type; | |
| 1247 | 1552 if (!db_.LookupResource(publicId, id, type)) |
| 315 | 1553 { |
| 1554 throw OrthancException(ErrorCode_UnknownResource); | |
| 1555 } | |
| 1556 | |
| 1237 | 1557 LogChange(id, changeType, type, publicId); |
| 315 | 1558 |
| 1559 transaction->Commit(); | |
| 1560 } | |
|
413
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|
1561 |
|
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|
1562 |
|
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|
1563 void ServerIndex::DeleteChanges() |
|
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1564 { |
|
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|
1565 boost::mutex::scoped_lock lock(mutex_); |
| 1247 | 1566 db_.ClearTable("Changes"); |
|
413
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|
1567 } |
|
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|
1568 |
|
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|
1569 void ServerIndex::DeleteExportedResources() |
|
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|
1570 { |
|
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|
1571 boost::mutex::scoped_lock lock(mutex_); |
| 1247 | 1572 db_.ClearTable("ExportedResources"); |
|
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|
1573 } |
|
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|
1574 |
|
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|
1575 |
| 646 | 1576 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
| 1577 /* out */ uint64_t& uncompressedSize, | |
| 1578 /* out */ unsigned int& countStudies, | |
| 1579 /* out */ unsigned int& countSeries, | |
| 1580 /* out */ unsigned int& countInstances, | |
| 1581 /* in */ int64_t id, | |
| 1582 /* in */ ResourceType type) | |
|
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|
1583 { |
| 646 | 1584 std::stack<int64_t> toExplore; |
| 1585 toExplore.push(id); | |
|
440
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|
1586 |
| 646 | 1587 countInstances = 0; |
| 1588 countSeries = 0; | |
| 1589 countStudies = 0; | |
| 1590 compressedSize = 0; | |
| 1591 uncompressedSize = 0; | |
|
440
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|
1592 |
|
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|
1593 while (!toExplore.empty()) |
|
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|
1594 { |
|
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|
1595 // Get the internal ID of the current resource |
|
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|
1596 int64_t resource = toExplore.top(); |
|
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|
1597 toExplore.pop(); |
|
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|
1598 |
| 1247 | 1599 ResourceType thisType = db_.GetResourceType(resource); |
|
440
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|
1600 |
|
702
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|
1601 std::list<FileContentType> f; |
| 1247 | 1602 db_.ListAvailableAttachments(f, resource); |
|
702
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|
1603 |
|
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|
1604 for (std::list<FileContentType>::const_iterator |
|
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1605 it = f.begin(); it != f.end(); ++it) |
|
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|
1606 { |
|
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|
1607 FileInfo attachment; |
| 1247 | 1608 if (db_.LookupAttachment(attachment, resource, *it)) |
|
702
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|
1609 { |
|
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|
1610 compressedSize += attachment.GetCompressedSize(); |
|
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1611 uncompressedSize += attachment.GetUncompressedSize(); |
|
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|
1612 } |
|
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|
1613 } |
|
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|
1614 |
|
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|
1615 if (thisType == ResourceType_Instance) |
|
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|
1616 { |
|
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|
1617 countInstances++; |
|
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|
1618 } |
|
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|
1619 else |
|
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|
1620 { |
|
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|
1621 switch (thisType) |
|
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|
1622 { |
|
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|
1623 case ResourceType_Study: |
|
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|
1624 countStudies++; |
|
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|
1625 break; |
|
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|
1626 |
|
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|
1627 case ResourceType_Series: |
|
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1628 countSeries++; |
|
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|
1629 break; |
|
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|
1630 |
|
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|
1631 default: |
|
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|
1632 break; |
|
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|
1633 } |
|
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|
1634 |
|
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1635 // Tag all the children of this resource as to be explored |
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|
1636 std::list<int64_t> tmp; |
| 1247 | 1637 db_.GetChildrenInternalId(tmp, resource); |
|
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|
1638 for (std::list<int64_t>::const_iterator |
| 656 | 1639 it = tmp.begin(); it != tmp.end(); ++it) |
|
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|
1640 { |
|
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|
1641 toExplore.push(*it); |
|
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|
1642 } |
|
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|
1643 } |
|
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|
1644 } |
|
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|
1645 |
| 646 | 1646 if (countStudies == 0) |
| 1647 { | |
| 1648 countStudies = 1; | |
| 1649 } | |
| 1650 | |
| 1651 if (countSeries == 0) | |
| 1652 { | |
| 1653 countSeries = 1; | |
| 1654 } | |
| 1655 } | |
| 1656 | |
| 1657 | |
| 1658 | |
| 1659 void ServerIndex::GetStatistics(Json::Value& target, | |
| 1660 const std::string& publicId) | |
| 1661 { | |
| 1662 boost::mutex::scoped_lock lock(mutex_); | |
| 1663 | |
| 1664 ResourceType type; | |
| 1665 int64_t top; | |
| 1247 | 1666 if (!db_.LookupResource(publicId, top, type)) |
| 646 | 1667 { |
| 1668 throw OrthancException(ErrorCode_UnknownResource); | |
| 1669 } | |
| 1670 | |
| 1671 uint64_t uncompressedSize; | |
| 1672 uint64_t compressedSize; | |
| 1673 unsigned int countStudies; | |
| 1674 unsigned int countSeries; | |
| 1675 unsigned int countInstances; | |
| 1676 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
| 1677 countSeries, countInstances, top, type); | |
| 1678 | |
|
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|
1679 target = Json::objectValue; |
|
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|
1680 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
|
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|
1681 target["DiskSizeMB"] = boost::lexical_cast<unsigned int>(compressedSize / MEGA_BYTES); |
|
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|
1682 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
|
23e5b35e3c5c
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|
1683 target["UncompressedSizeMB"] = boost::lexical_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
|
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|
1684 |
|
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diff
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|
1685 switch (type) |
|
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diff
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|
1686 { |
|
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diff
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|
1687 // Do NOT add "break" below this point! |
|
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diff
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|
1688 case ResourceType_Patient: |
|
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|
1689 target["CountStudies"] = countStudies; |
|
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|
1690 |
|
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diff
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|
1691 case ResourceType_Study: |
|
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|
1692 target["CountSeries"] = countSeries; |
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|
1693 |
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|
1694 case ResourceType_Series: |
|
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1695 target["CountInstances"] = countInstances; |
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|
1696 |
|
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|
1697 case ResourceType_Instance: |
|
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|
1698 default: |
|
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1699 break; |
|
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1700 } |
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1701 } |
|
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1702 |
|
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|
1703 |
| 646 | 1704 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
| 1705 /* out */ uint64_t& uncompressedSize, | |
| 1706 /* out */ unsigned int& countStudies, | |
| 1707 /* out */ unsigned int& countSeries, | |
| 1708 /* out */ unsigned int& countInstances, | |
| 1709 const std::string& publicId) | |
| 1710 { | |
| 1711 boost::mutex::scoped_lock lock(mutex_); | |
| 1712 | |
| 1713 ResourceType type; | |
| 1714 int64_t top; | |
| 1247 | 1715 if (!db_.LookupResource(publicId, top, type)) |
| 646 | 1716 { |
| 1717 throw OrthancException(ErrorCode_UnknownResource); | |
| 1718 } | |
| 1719 | |
| 1720 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
| 1721 countSeries, countInstances, top, type); | |
| 1722 } | |
| 1723 | |
| 1724 | |
|
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|
1725 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
|
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1726 { |
|
810
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|
1727 int stableAge = Configuration::GetGlobalIntegerParameter("StableAge", 60); |
|
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1728 if (stableAge <= 0) |
|
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1729 { |
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|
1730 stableAge = 60; |
|
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1731 } |
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|
1732 |
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|
1733 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
|
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1734 |
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|
1735 while (!that->done_) |
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1736 { |
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|
1737 // Check for stable resources each second |
|
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|
1738 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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1739 |
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|
1740 boost::mutex::scoped_lock lock(that->mutex_); |
| 513 | 1741 |
|
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1742 while (!that->unstableResources_.IsEmpty() && |
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|
1743 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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|
1744 { |
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1745 // This DICOM resource has not received any new instance for |
|
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1746 // some time. It can be considered as stable. |
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1747 |
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|
1748 UnstableResourcePayload payload; |
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|
1749 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1750 |
| 513 | 1751 // Ensure that the resource is still existing before logging the change |
| 1247 | 1752 if (that->db_.IsExistingResource(id)) |
|
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1753 { |
|
1177
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|
1754 switch (payload.GetResourceType()) |
| 513 | 1755 { |
|
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|
1756 case ResourceType_Patient: |
| 1237 | 1757 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
| 513 | 1758 break; |
|
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1759 |
|
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|
1760 case ResourceType_Study: |
| 1237 | 1761 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
| 513 | 1762 break; |
|
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1763 |
|
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|
1764 case ResourceType_Series: |
| 1237 | 1765 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
| 513 | 1766 break; |
| 1767 | |
| 1768 default: | |
| 1769 throw OrthancException(ErrorCode_InternalError); | |
| 1770 } | |
| 1771 | |
| 1772 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
|
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1773 } |
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1774 } |
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1775 } |
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|
1776 |
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|
1777 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1778 } |
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|
1779 |
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1780 |
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|
1781 void ServerIndex::MarkAsUnstable(int64_t id, |
|
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1782 Orthanc::ResourceType type, |
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1783 const std::string& publicId) |
|
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1784 { |
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1785 // WARNING: Before calling this method, "mutex_" must be locked. |
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1786 |
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1787 assert(type == Orthanc::ResourceType_Patient || |
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1788 type == Orthanc::ResourceType_Study || |
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1789 type == Orthanc::ResourceType_Series); |
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1790 |
|
1177
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|
1791 UnstableResourcePayload payload(type, publicId); |
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|
1792 unstableResources_.AddOrMakeMostRecent(id, payload); |
|
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1793 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
|
1189
6b9b02a16e99
NewChildInstance change type
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|
1794 |
| 1237 | 1795 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
|
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1796 } |
| 521 | 1797 |
| 1798 | |
| 1799 | |
| 1162 | 1800 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
| 1801 const DicomTag& tag, | |
| 1802 const std::string& value, | |
| 1803 ResourceType type) | |
| 615 | 1804 { |
| 1805 result.clear(); | |
| 1806 | |
| 1807 boost::mutex::scoped_lock lock(mutex_); | |
| 1808 | |
| 1809 std::list<int64_t> id; | |
| 1247 | 1810 db_.LookupIdentifier(id, tag, value); |
| 615 | 1811 |
| 1812 for (std::list<int64_t>::const_iterator | |
| 656 | 1813 it = id.begin(); it != id.end(); ++it) |
| 615 | 1814 { |
| 1247 | 1815 if (db_.GetResourceType(*it) == type) |
| 615 | 1816 { |
| 1247 | 1817 result.push_back(db_.GetPublicId(*it)); |
| 615 | 1818 } |
| 1819 } | |
| 1820 } | |
| 1821 | |
| 1822 | |
| 1162 | 1823 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
| 1824 const DicomTag& tag, | |
| 1825 const std::string& value) | |
| 521 | 1826 { |
| 1827 result.clear(); | |
| 1828 | |
| 1829 boost::mutex::scoped_lock lock(mutex_); | |
| 1830 | |
| 1831 std::list<int64_t> id; | |
| 1247 | 1832 db_.LookupIdentifier(id, tag, value); |
| 521 | 1833 |
| 1834 for (std::list<int64_t>::const_iterator | |
| 656 | 1835 it = id.begin(); it != id.end(); ++it) |
| 521 | 1836 { |
| 1247 | 1837 result.push_back(db_.GetPublicId(*it)); |
| 521 | 1838 } |
| 1839 } | |
| 1840 | |
| 1841 | |
| 1162 | 1842 void ServerIndex::LookupIdentifier(std::list< std::pair<ResourceType, std::string> >& result, |
| 1843 const std::string& value) | |
| 521 | 1844 { |
| 1845 result.clear(); | |
| 1846 | |
| 1847 boost::mutex::scoped_lock lock(mutex_); | |
| 1848 | |
| 1849 std::list<int64_t> id; | |
| 1247 | 1850 db_.LookupIdentifier(id, value); |
| 521 | 1851 |
| 1852 for (std::list<int64_t>::const_iterator | |
| 656 | 1853 it = id.begin(); it != id.end(); ++it) |
| 521 | 1854 { |
| 1247 | 1855 result.push_back(std::make_pair(db_.GetResourceType(*it), |
| 1856 db_.GetPublicId(*it))); | |
| 521 | 1857 } |
| 1858 } | |
|
699
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|
1859 |
|
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|
1860 |
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|
1861 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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|
1862 const std::string& publicId) |
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1863 { |
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|
1864 boost::mutex::scoped_lock lock(mutex_); |
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|
1865 |
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|
1866 Transaction t(*this); |
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|
1867 |
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|
1868 ResourceType resourceType; |
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|
1869 int64_t resourceId; |
| 1247 | 1870 if (!db_.LookupResource(publicId, resourceId, resourceType)) |
|
699
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1871 { |
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|
1872 return StoreStatus_Failure; // Inexistent resource |
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parents:
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changeset
|
1873 } |
|
2929e17f8447
add attachments to resources
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diff
changeset
|
1874 |
|
704
4789da60d655
recycling with custom attachments
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parents:
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diff
changeset
|
1875 // Remove possible previous attachment |
| 1247 | 1876 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
|
699
2929e17f8447
add attachments to resources
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diff
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|
1877 |
|
704
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recycling with custom attachments
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diff
changeset
|
1878 // Locate the patient of the target resource |
|
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recycling with custom attachments
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|
1879 int64_t patientId = resourceId; |
|
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recycling with custom attachments
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|
1880 for (;;) |
|
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|
1881 { |
|
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|
1882 int64_t parent; |
| 1247 | 1883 if (db_.LookupParent(parent, patientId)) |
|
704
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recycling with custom attachments
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diff
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|
1884 { |
|
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recycling with custom attachments
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diff
changeset
|
1885 // We have not reached the patient level yet |
|
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recycling with custom attachments
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diff
changeset
|
1886 patientId = parent; |
|
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recycling with custom attachments
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diff
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|
1887 } |
|
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recycling with custom attachments
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changeset
|
1888 else |
|
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recycling with custom attachments
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|
1889 { |
|
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recycling with custom attachments
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diff
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|
1890 // We have reached the patient level |
|
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recycling with custom attachments
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diff
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|
1891 break; |
|
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diff
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|
1892 } |
|
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|
1893 } |
|
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|
1894 |
|
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diff
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|
1895 // Possibly apply the recycling mechanism while preserving this patient |
| 1247 | 1896 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
| 1897 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
|
704
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|
1898 |
| 1247 | 1899 db_.AddAttachment(resourceId, attachment); |
|
699
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|
1900 |
|
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changeset
|
1901 t.Commit(attachment.GetCompressedSize()); |
|
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|
1902 |
|
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changeset
|
1903 return StoreStatus_Success; |
|
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|
1904 } |
|
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changeset
|
1905 |
|
702
7592a48e97e4
delete custom attachment
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parents:
701
diff
changeset
|
1906 |
|
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diff
changeset
|
1907 void ServerIndex::DeleteAttachment(const std::string& publicId, |
|
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diff
changeset
|
1908 FileContentType type) |
|
7592a48e97e4
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parents:
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diff
changeset
|
1909 { |
|
7592a48e97e4
delete custom attachment
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parents:
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diff
changeset
|
1910 boost::mutex::scoped_lock lock(mutex_); |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1911 |
|
7592a48e97e4
delete custom attachment
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parents:
701
diff
changeset
|
1912 Transaction t(*this); |
|
7592a48e97e4
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parents:
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diff
changeset
|
1913 |
|
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parents:
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diff
changeset
|
1914 ResourceType rtype; |
|
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delete custom attachment
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parents:
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diff
changeset
|
1915 int64_t id; |
| 1247 | 1916 if (!db_.LookupResource(publicId, id, rtype)) |
|
702
7592a48e97e4
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parents:
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diff
changeset
|
1917 { |
|
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diff
changeset
|
1918 throw OrthancException(ErrorCode_UnknownResource); |
|
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diff
changeset
|
1919 } |
|
7592a48e97e4
delete custom attachment
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parents:
701
diff
changeset
|
1920 |
| 1247 | 1921 db_.DeleteAttachment(id, type); |
|
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1922 |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1923 t.Commit(0); |
|
7592a48e97e4
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parents:
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diff
changeset
|
1924 } |
|
7592a48e97e4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1925 |
|
7592a48e97e4
delete custom attachment
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parents:
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diff
changeset
|
1926 |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1927 bool ServerIndex::GetMetadata(Json::Value& target, |
|
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diff
changeset
|
1928 const std::string& publicId) |
|
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diff
changeset
|
1929 { |
|
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|
1930 boost::mutex::scoped_lock lock(mutex_); |
|
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diff
changeset
|
1931 |
|
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|
1932 target = Json::objectValue; |
|
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diff
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|
1933 |
|
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anonymization refactoring
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diff
changeset
|
1934 ResourceType type; |
|
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diff
changeset
|
1935 int64_t id; |
| 1247 | 1936 if (!db_.LookupResource(publicId, id, type)) |
|
1002
b067017a8a5b
anonymization refactoring
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diff
changeset
|
1937 { |
|
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diff
changeset
|
1938 return false; |
|
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diff
changeset
|
1939 } |
|
b067017a8a5b
anonymization refactoring
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parents:
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diff
changeset
|
1940 |
|
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anonymization refactoring
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parents:
831
diff
changeset
|
1941 std::list<MetadataType> metadata; |
| 1247 | 1942 db_.ListAvailableMetadata(metadata, id); |
|
1002
b067017a8a5b
anonymization refactoring
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parents:
831
diff
changeset
|
1943 |
|
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diff
changeset
|
1944 for (std::list<MetadataType>::const_iterator |
|
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diff
changeset
|
1945 it = metadata.begin(); it != metadata.end(); it++) |
|
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diff
changeset
|
1946 { |
|
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parents:
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diff
changeset
|
1947 std::string key = EnumerationToString(*it); |
| 1238 | 1948 |
| 1949 std::string value; | |
| 1247 | 1950 if (!db_.LookupMetadata(value, id, *it)) |
| 1238 | 1951 { |
| 1952 value.clear(); | |
| 1953 } | |
| 1954 | |
|
1002
b067017a8a5b
anonymization refactoring
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parents:
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diff
changeset
|
1955 target[key] = value; |
|
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diff
changeset
|
1956 } |
|
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diff
changeset
|
1957 |
|
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diff
changeset
|
1958 return true; |
|
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anonymization refactoring
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parents:
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diff
changeset
|
1959 } |
|
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1960 |
|
efece308018e
report database version in /system
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parents:
1198
diff
changeset
|
1961 |
|
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
1962 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
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parents:
1247
diff
changeset
|
1963 const std::string& value) |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
1964 { |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
1965 boost::mutex::scoped_lock lock(mutex_); |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
1966 db_.SetGlobalProperty(property, value); |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
1967 } |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
1968 |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
1969 |
|
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1970 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
|
efece308018e
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parents:
1198
diff
changeset
|
1971 const std::string& defaultValue) |
|
efece308018e
report database version in /system
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parents:
1198
diff
changeset
|
1972 { |
|
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1973 boost::mutex::scoped_lock lock(mutex_); |
| 1239 | 1974 |
| 1975 std::string value; | |
| 1247 | 1976 if (db_.LookupGlobalProperty(value, property)) |
| 1239 | 1977 { |
| 1978 return value; | |
| 1979 } | |
| 1980 else | |
| 1981 { | |
| 1982 return defaultValue; | |
| 1983 } | |
|
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1984 } |
|
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1985 |
| 0 | 1986 } |