Mercurial > hg > orthanc
annotate OrthancServer/OrthancFindRequestHandler.cpp @ 1952:ecf8b8ebfb52 dcmtk-3.6.1
Closed branch dcmtk-3.6.1
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 05 Apr 2016 15:08:03 +0200 |
parents | 4e7c318a3f69 |
children | 512b6e76f531 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
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33 #include "PrecompiledHeadersServer.h" |
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34 #include "OrthancFindRequestHandler.h" |
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35 |
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36 #include "../Core/DicomFormat/DicomArray.h" |
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37 #include "../Core/Logging.h" |
795 | 38 #include "FromDcmtkBridge.h" |
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39 #include "OrthancInitialization.h" |
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40 #include "Search/LookupResource.h" |
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41 #include "ServerToolbox.h" |
608 | 42 |
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43 #include <boost/regex.hpp> |
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44 |
608 | 45 |
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46 namespace Orthanc |
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47 { |
608 | 48 static void AddAnswer(DicomFindAnswers& answers, |
49 const Json::Value& resource, | |
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50 const DicomArray& query, |
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51 const std::list<DicomTag>& sequencesToReturn) |
608 | 52 { |
53 DicomMap result; | |
54 | |
55 for (size_t i = 0; i < query.GetSize(); i++) | |
56 { | |
1346 | 57 if (query.GetElement(i).GetTag() == DICOM_TAG_QUERY_RETRIEVE_LEVEL) |
58 { | |
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59 // Fix issue 30 on Google Code (QR response missing "Query/Retrieve Level" (008,0052)) |
1346 | 60 result.SetValue(query.GetElement(i).GetTag(), query.GetElement(i).GetValue()); |
61 } | |
62 else if (query.GetElement(i).GetTag() == DICOM_TAG_SPECIFIC_CHARACTER_SET) | |
63 { | |
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64 // Do not include the encoding, this is handled by class ParsedDicomFile |
1346 | 65 } |
66 else | |
608 | 67 { |
68 std::string tag = query.GetElement(i).GetTag().Format(); | |
69 std::string value; | |
70 if (resource.isMember(tag)) | |
71 { | |
72 value = resource.get(tag, Json::arrayValue).get("Value", "").asString(); | |
73 result.SetValue(query.GetElement(i).GetTag(), value); | |
74 } | |
722 | 75 else |
76 { | |
77 result.SetValue(query.GetElement(i).GetTag(), ""); | |
78 } | |
608 | 79 } |
80 } | |
81 | |
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82 if (result.GetSize() == 0 && |
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83 sequencesToReturn.empty()) |
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84 { |
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85 LOG(WARNING) << "The C-FIND request does not return any DICOM tag"; |
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86 } |
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87 else if (sequencesToReturn.empty()) |
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88 { |
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89 answers.Add(result); |
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90 } |
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91 else |
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92 { |
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93 ParsedDicomFile dicom(result); |
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94 |
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95 for (std::list<DicomTag>::const_iterator tag = sequencesToReturn.begin(); |
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96 tag != sequencesToReturn.end(); ++tag) |
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97 { |
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98 std::cout << tag->Format(); |
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99 |
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100 const Json::Value& source = resource[tag->Format()]; |
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101 |
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102 if (source.type() == Json::objectValue && |
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103 source.isMember("Type") && |
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104 source.isMember("Value") && |
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105 source["Type"].asString() == "Sequence" && |
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106 source["Value"].type() == Json::arrayValue) |
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107 { |
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108 Json::Value content = Json::arrayValue; |
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109 |
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110 for (Json::Value::ArrayIndex i = 0; i < source["Value"].size(); i++) |
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111 { |
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112 Json::Value item; |
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113 Toolbox::SimplifyTags(item, source["Value"][i], DicomToJsonFormat_Short); |
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114 content.append(item); |
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115 } |
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116 |
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117 dicom.Replace(*tag, content, false); |
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118 } |
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119 } |
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120 |
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121 answers.Add(dicom); |
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122 } |
608 | 123 } |
124 | |
125 | |
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126 |
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127 bool OrthancFindRequestHandler::FilterQueryTag(std::string& value /* can be modified */, |
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128 ResourceType level, |
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129 const DicomTag& tag, |
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130 ModalityManufacturer manufacturer) |
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131 { |
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132 switch (manufacturer) |
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133 { |
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134 case ModalityManufacturer_EFilm2: |
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135 // Following Denis Nesterov's mail on 2015-11-30 |
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136 if (tag == DicomTag(0x0008, 0x0000) || // "GenericGroupLength" |
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137 tag == DicomTag(0x0010, 0x0000) || // "GenericGroupLength" |
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138 tag == DicomTag(0x0020, 0x0000)) // "GenericGroupLength" |
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139 { |
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140 return false; |
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141 } |
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142 |
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143 break; |
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144 |
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145 case ModalityManufacturer_Vitrea: |
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146 // Following Denis Nesterov's mail on 2015-11-30 |
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147 if (tag == DicomTag(0x5653, 0x0010)) // "PrivateCreator = Vital Images SW 3.4" |
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148 { |
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149 return false; |
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150 } |
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151 |
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152 break; |
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153 |
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154 default: |
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155 break; |
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156 } |
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157 |
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158 return true; |
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159 } |
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160 |
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161 |
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162 void OrthancFindRequestHandler::Handle(DicomFindAnswers& answers, |
665 | 163 const DicomMap& input, |
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164 const std::list<DicomTag>& sequencesToReturn, |
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165 const std::string& remoteIp, |
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166 const std::string& remoteAet, |
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167 const std::string& calledAet) |
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168 { |
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169 /** |
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170 * Ensure that the remote modality is known to Orthanc. |
665 | 171 **/ |
172 | |
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173 RemoteModalityParameters modality; |
665 | 174 |
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175 if (!Configuration::LookupDicomModalityUsingAETitle(modality, remoteAet)) |
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176 { |
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177 throw OrthancException(ErrorCode_UnknownModality); |
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178 } |
806 | 179 |
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180 bool caseSensitivePN = Configuration::GetGlobalBoolParameter("CaseSensitivePN", false); |
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181 |
665 | 182 |
183 /** | |
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184 * Retrieve the query level. |
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185 **/ |
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186 |
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187 const DicomValue* levelTmp = input.TestAndGetValue(DICOM_TAG_QUERY_RETRIEVE_LEVEL); |
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188 if (levelTmp == NULL || |
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189 levelTmp->IsNull() || |
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190 levelTmp->IsBinary()) |
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191 { |
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192 LOG(ERROR) << "C-FIND request without the tag 0008,0052 (QueryRetrieveLevel)"; |
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193 throw OrthancException(ErrorCode_BadRequest); |
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194 } |
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195 |
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196 ResourceType level = StringToResourceType(levelTmp->GetContent().c_str()); |
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197 |
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198 if (level != ResourceType_Patient && |
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199 level != ResourceType_Study && |
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200 level != ResourceType_Series && |
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201 level != ResourceType_Instance) |
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202 { |
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203 throw OrthancException(ErrorCode_NotImplemented); |
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204 } |
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205 |
665 | 206 |
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207 DicomArray query(input); |
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208 LOG(INFO) << "DICOM C-Find request at level: " << EnumerationToString(level); |
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209 |
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210 for (size_t i = 0; i < query.GetSize(); i++) |
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211 { |
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212 if (!query.GetElement(i).GetValue().IsNull()) |
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213 { |
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214 LOG(INFO) << " " << query.GetElement(i).GetTag() |
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215 << " " << FromDcmtkBridge::GetName(query.GetElement(i).GetTag()) |
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216 << " = " << query.GetElement(i).GetValue().GetContent(); |
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217 } |
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218 } |
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219 |
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220 for (std::list<DicomTag>::const_iterator it = sequencesToReturn.begin(); |
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221 it != sequencesToReturn.end(); ++it) |
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222 { |
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223 LOG(INFO) << " (" << it->Format() |
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224 << ") " << FromDcmtkBridge::GetName(*it) |
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225 << " : sequence tag whose content will be copied"; |
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226 } |
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227 |
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228 |
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229 /** |
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230 * Build up the query object. |
608 | 231 **/ |
232 | |
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233 LookupResource finder(level); |
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234 |
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235 for (size_t i = 0; i < query.GetSize(); i++) |
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236 { |
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237 const DicomTag tag = query.GetElement(i).GetTag(); |
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238 |
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239 if (query.GetElement(i).GetValue().IsNull() || |
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240 tag == DICOM_TAG_QUERY_RETRIEVE_LEVEL || |
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241 tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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242 { |
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243 continue; |
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244 } |
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245 |
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246 std::string value = query.GetElement(i).GetValue().GetContent(); |
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247 if (value.size() == 0) |
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248 { |
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249 // An empty string corresponds to a "*" wildcard constraint, so we ignore it |
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250 continue; |
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251 } |
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252 |
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253 if (FilterQueryTag(value, level, tag, modality.GetManufacturer())) |
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254 { |
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255 ValueRepresentation vr = FromDcmtkBridge::GetValueRepresentation(tag); |
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257 // DICOM specifies that searches must be case sensitive, except |
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258 // for tags with a PN value representation |
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259 bool sensitive = true; |
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260 if (vr == ValueRepresentation_PatientName) |
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261 { |
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262 sensitive = caseSensitivePN; |
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263 } |
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264 |
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265 finder.AddDicomConstraint(tag, value, sensitive); |
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266 } |
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267 else |
1758 | 268 { |
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269 LOG(INFO) << "Because of a patch for the manufacturer of the remote modality, " |
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270 << "ignoring constraint on tag (" << tag.Format() << ") " << FromDcmtkBridge::GetName(tag); |
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271 } |
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272 } |
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273 |
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274 |
608 | 275 /** |
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276 * Run the query. |
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277 **/ |
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278 |
1753 | 279 size_t maxResults = (level == ResourceType_Instance) ? maxInstances_ : maxResults_; |
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280 |
1753 | 281 std::vector<std::string> resources, instances; |
282 context_.GetIndex().FindCandidates(resources, instances, finder); | |
1752 | 283 |
1753 | 284 assert(resources.size() == instances.size()); |
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285 bool complete = true; |
1753 | 286 |
287 for (size_t i = 0; i < instances.size(); i++) | |
1752 | 288 { |
1753 | 289 Json::Value dicom; |
290 context_.ReadJson(dicom, instances[i]); | |
291 | |
292 if (finder.IsMatch(dicom)) | |
293 { | |
294 if (maxResults != 0 && | |
295 answers.GetSize() >= maxResults) | |
296 { | |
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297 complete = false; |
1753 | 298 break; |
299 } | |
300 else | |
301 { | |
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302 AddAnswer(answers, dicom, query, sequencesToReturn); |
1753 | 303 } |
304 } | |
1752 | 305 } |
306 | |
1753 | 307 LOG(INFO) << "Number of matching resources: " << answers.GetSize(); |
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308 |
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309 answers.SetComplete(complete); |
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310 } |
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311 } |