annotate OrthancFramework/Sources/DicomFormat/StreamBlockReader.cpp @ 5043:ec5c203a97ea

returning sequences in MainDicomTags and RequestedTags
author Alain Mazy <am@osimis.io>
date Mon, 27 Jun 2022 15:22:19 +0200
parents 43e613a7756b
children 0ea402b4d901
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4220
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
4870
43e613a7756b upgrade to year 2022
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4831
diff changeset
5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
43e613a7756b upgrade to year 2022
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4831
diff changeset
6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
4220
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * modify it under the terms of the GNU Lesser General Public License
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * as published by the Free Software Foundation, either version 3 of
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * the License, or (at your option) any later version.
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 *
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * Lesser General Public License for more details.
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 *
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * You should have received a copy of the GNU Lesser General Public
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * License along with this program. If not, see
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * <http://www.gnu.org/licenses/>.
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 **/
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #include "../PrecompiledHeaders.h"
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 #include "StreamBlockReader.h"
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 #include "../OrthancException.h"
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 namespace Orthanc
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 StreamBlockReader::StreamBlockReader(std::istream& stream) :
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 stream_(stream),
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 blockPos_(0),
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 processedBytes_(0)
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 }
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 void StreamBlockReader::Schedule(size_t blockSize)
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 if (!block_.empty())
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 throw OrthancException(ErrorCode_BadSequenceOfCalls);
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 }
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 else
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 block_.resize(blockSize);
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 blockPos_ = 0;
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 }
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 }
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 bool StreamBlockReader::Read(std::string& block)
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 if (block_.empty())
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 if (blockPos_ != 0)
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 throw OrthancException(ErrorCode_BadSequenceOfCalls);
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 }
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 block.clear();
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 return true;
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 }
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 else
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 while (blockPos_ < block_.size())
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 {
4494
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
70 /**
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
71 * WARNING: Do NOT use "stream_.readsome()", as it does not
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
72 * work properly on non-buffered stream (which is the case in
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
73 * "DicomStreamReader::LookupPixelDataOffset()" for buffers)
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
74 **/
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
75
4220
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 size_t remainingBytes = block_.size() - blockPos_;
4494
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
77 stream_.read(&block_[blockPos_], remainingBytes);
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
78
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
79 std::streamsize r = stream_.gcount();
4220
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 if (r == 0)
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 return false;
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 }
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 else
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 {
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86 blockPos_ += r;
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87 }
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88 }
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 processedBytes_ += block_.size();
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92 block.swap(block_);
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 block_.clear();
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 return true;
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 }
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 }
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4220
diff changeset
97
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4296
diff changeset
98 uint64_t StreamBlockReader::GetProcessedBytes() const
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4220
diff changeset
99 {
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4220
diff changeset
100 return processedBytes_;
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4220
diff changeset
101 }
4220
92a21efa5c96 reorganization of DicomStreamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102 }