Mercurial > hg > orthanc

annotate OrthancServer/OrthancRestApi/OrthancRestArchive.cpp @ 938:eb5f03334da6

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 24 Jun 2014 17:59:48 +0200
parents 84513f2ee1f3
children cd8a69aa4093 83622b0f544c
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege,
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4 * Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "../PrecompiledHeadersServer.h"
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34 #include "OrthancRestApi.h"
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35
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36 #include "../../Core/Compression/HierarchicalZipWriter.h"
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37 #include "../../Core/HttpServer/FilesystemHttpSender.h"
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38 #include "../../Core/Uuid.h"
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39
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40 #include <glog/logging.h>
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41
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42 #if defined(_MSC_VER)
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43 #define snprintf _snprintf
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44 #endif
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45
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46 static const uint64_t MEGA_BYTES = 1024 * 1024;
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47 static const uint64_t GIGA_BYTES = 1024 * 1024 * 1024;
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48
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49 namespace Orthanc
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50 {
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51 // Download of ZIP files ----------------------------------------------------
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52
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53 static std::string GetDirectoryNameInArchive(const Json::Value& resource,
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54 ResourceType resourceType)
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55 {
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56 switch (resourceType)
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57 {
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58 case ResourceType_Patient:
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59 {
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60 std::string p = resource["MainDicomTags"]["PatientID"].asString();
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61 std::string n = resource["MainDicomTags"]["PatientName"].asString();
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62 return p + " " + n;
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63 }
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64
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65 case ResourceType_Study:
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66 {
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67 return resource["MainDicomTags"]["StudyDescription"].asString();
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68 }
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69
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70 case ResourceType_Series:
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71 {
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72 std::string d = resource["MainDicomTags"]["SeriesDescription"].asString();
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73 std::string m = resource["MainDicomTags"]["Modality"].asString();
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74 return m + " " + d;
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75 }
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76
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77 default:
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78 throw OrthancException(ErrorCode_InternalError);
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79 }
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80 }
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81
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82 static bool CreateRootDirectoryInArchive(HierarchicalZipWriter& writer,
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83 ServerContext& context,
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84 const Json::Value& resource,
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85 ResourceType resourceType)
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86 {
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87 if (resourceType == ResourceType_Patient)
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88 {
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89 return true;
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90 }
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91
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92 ResourceType parentType = GetParentResourceType(resourceType);
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93 Json::Value parent;
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94
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95 switch (resourceType)
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96 {
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97 case ResourceType_Study:
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98 {
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99 if (!context.GetIndex().LookupResource(parent, resource["ParentPatient"].asString(), parentType))
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100 {
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101 return false;
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102 }
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103
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104 break;
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105 }
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106
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107 case ResourceType_Series:
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108 if (!context.GetIndex().LookupResource(parent, resource["ParentStudy"].asString(), parentType) ||
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109 !CreateRootDirectoryInArchive(writer, context, parent, parentType))
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110 {
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111 return false;
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112 }
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113 break;
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114
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115 default:
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116 throw OrthancException(ErrorCode_NotImplemented);
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117 }
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118
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119 writer.OpenDirectory(GetDirectoryNameInArchive(parent, parentType).c_str());
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120 return true;
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121 }
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122
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123 static bool ArchiveInstance(HierarchicalZipWriter& writer,
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124 ServerContext& context,
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125 const std::string& instancePublicId,
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126 const char* filename)
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127 {
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128 Json::Value instance;
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129
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130 if (!context.GetIndex().LookupResource(instance, instancePublicId, ResourceType_Instance))
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131 {
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132 return false;
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133 }
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134
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135 writer.OpenFile(filename);
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136
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137 std::string dicom;
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138 context.ReadFile(dicom, instancePublicId, FileContentType_Dicom);
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139 writer.Write(dicom);
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140
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diff changeset
141 return true;
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diff changeset
142 }
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parents:
diff changeset
143
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diff changeset
144 static bool ArchiveInternal(HierarchicalZipWriter& writer,
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parents:
diff changeset
145 ServerContext& context,
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diff changeset
146 const std::string& publicId,
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diff changeset
147 ResourceType resourceType,
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diff changeset
148 bool isFirstLevel)
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diff changeset
149 {
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diff changeset
150 Json::Value resource;
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parents:
diff changeset
151 if (!context.GetIndex().LookupResource(resource, publicId, resourceType))
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diff changeset
152 {
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diff changeset
153 return false;
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parents:
diff changeset
154 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
155
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diff changeset
156 if (isFirstLevel &&
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diff changeset
157 !CreateRootDirectoryInArchive(writer, context, resource, resourceType))
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diff changeset
158 {
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diff changeset
159 return false;
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diff changeset
160 }
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diff changeset
161
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diff changeset
162 writer.OpenDirectory(GetDirectoryNameInArchive(resource, resourceType).c_str());
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163
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diff changeset
164 switch (resourceType)
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165 {
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166 case ResourceType_Patient:
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167 for (Json::Value::ArrayIndex i = 0; i < resource["Studies"].size(); i++)
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168 {
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169 std::string studyId = resource["Studies"][i].asString();
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170 if (!ArchiveInternal(writer, context, studyId, ResourceType_Study, false))
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171 {
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172 return false;
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173 }
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174 }
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175 break;
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176
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177 case ResourceType_Study:
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178 for (Json::Value::ArrayIndex i = 0; i < resource["Series"].size(); i++)
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179 {
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180 std::string seriesId = resource["Series"][i].asString();
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181 if (!ArchiveInternal(writer, context, seriesId, ResourceType_Series, false))
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diff changeset
182 {
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183 return false;
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184 }
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185 }
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186 break;
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187
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188 case ResourceType_Series:
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189 {
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190 // Create a filename prefix, depending on the modality
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diff changeset
191 char format[16] = "%08d";
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192
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diff changeset
193 if (resource["MainDicomTags"].isMember("Modality"))
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diff changeset
194 {
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diff changeset
195 std::string modality = resource["MainDicomTags"]["Modality"].asString();
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diff changeset
196
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diff changeset
197 if (modality.size() == 1)
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diff changeset
198 {
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diff changeset
199 snprintf(format, sizeof(format) - 1, "%c%%07d", toupper(modality[0]));
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diff changeset
200 }
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parents:
diff changeset
201 else if (modality.size() >= 2)
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parents:
diff changeset
202 {
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diff changeset
203 snprintf(format, sizeof(format) - 1, "%c%c%%06d", toupper(modality[0]), toupper(modality[1]));
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diff changeset
204 }
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parents:
diff changeset
205 }
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parents:
diff changeset
206
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parents:
diff changeset
207 char filename[16];
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parents:
diff changeset
208
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diff changeset
209 for (Json::Value::ArrayIndex i = 0; i < resource["Instances"].size(); i++)
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
210 {
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parents:
diff changeset
211 snprintf(filename, sizeof(filename) - 1, format, i);
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parents:
diff changeset
212
5197fd35333c refactoring of OrthancRestApi
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diff changeset
213 std::string publicId = resource["Instances"][i].asString();
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diff changeset
214
5197fd35333c refactoring of OrthancRestApi
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diff changeset
215 // This was the implementation up to Orthanc 0.7.0:
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parents:
diff changeset
216 // std::string filename = instance["MainDicomTags"]["SOPInstanceUID"].asString() + ".dcm";
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
217
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
218 if (!ArchiveInstance(writer, context, publicId, filename))
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219 {
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
220 return false;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
221 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
222 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
223
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
224 break;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
225 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
226
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
227 default:
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
228 throw OrthancException(ErrorCode_InternalError);
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parents:
diff changeset
229 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
230
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
231 writer.CloseDirectory();
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
232 return true;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
233 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
234
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
235 template <enum ResourceType resourceType>
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 static void GetArchive(RestApi::GetCall& call)
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237 {
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
238 ServerContext& context = OrthancRestApi::GetContext(call);
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
239
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
240 std::string id = call.GetUriComponent("id", "");
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
241
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
242 /**
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
243 * Determine whether ZIP64 is required. Original ZIP format can
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
244 * store up to 2GB of data (some implementation supporting up to
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
245 * 4GB of data), and up to 65535 files.
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
246 * https://en.wikipedia.org/wiki/Zip_(file_format)#ZIP64
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247 **/
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
248
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
249 uint64_t uncompressedSize;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 uint64_t compressedSize;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 unsigned int countStudies;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252 unsigned int countSeries;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
253 unsigned int countInstances;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
254 context.GetIndex().GetStatistics(compressedSize, uncompressedSize,
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
255 countStudies, countSeries, countInstances, id);
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 const bool isZip64 = (uncompressedSize >= 2 * GIGA_BYTES ||
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 countInstances >= 65535);
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
258
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
259 LOG(INFO) << "Creating a ZIP file with " << countInstances << " files of size "
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
260 << (uncompressedSize / MEGA_BYTES) << "MB using the "
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 << (isZip64 ? "ZIP64" : "ZIP32") << " file format";
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
263 // Create a RAII for the temporary file to manage the ZIP file
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264 Toolbox::TemporaryFile tmp;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 {
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
267 // Create a ZIP writer
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 HierarchicalZipWriter writer(tmp.GetPath().c_str());
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
269 writer.SetZip64(isZip64);
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 // Store the requested resource into the ZIP
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
272 if (!ArchiveInternal(writer, context, id, resourceType, true))
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
273 {
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
274 return;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 // Prepare the sending of the ZIP file
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 FilesystemHttpSender sender(tmp.GetPath().c_str());
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 sender.SetContentType("application/zip");
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 sender.SetDownloadFilename(id + ".zip");
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 // Send the ZIP
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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284 call.GetOutput().AnswerFile(sender);
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285
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286 // The temporary file is automatically removed thanks to the RAII
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287 }
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288
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289
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290 void OrthancRestApi::RegisterArchive()
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291 {
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292 Register("/patients/{id}/archive", GetArchive<ResourceType_Patient>);
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293 Register("/studies/{id}/archive", GetArchive<ResourceType_Study>);
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294 Register("/series/{id}/archive", GetArchive<ResourceType_Series>);
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295 }
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296 }