Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 2812:ea7aea6f6a95
improved naming of methods in IJob
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 06 Sep 2018 16:23:40 +0200 |
parents | a21b244efb37 |
children | 8aa6aef11b70 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "OrthancRestApi.h" |
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36 |
2642 | 37 #include "../../Core/DicomParsing/FromDcmtkBridge.h" |
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38 #include "../../Core/Logging.h" |
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39 #include "../ServerContext.h" |
2642 | 40 #include "../ServerJobs/ResourceModificationJob.h" |
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41 |
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42 #include <boost/lexical_cast.hpp> |
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43 #include <boost/algorithm/string/predicate.hpp> |
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44 |
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45 namespace Orthanc |
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46 { |
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47 // Modification of DICOM instances ------------------------------------------ |
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48 |
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49 |
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50 static std::string GeneratePatientName(ServerContext& context) |
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51 { |
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52 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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53 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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54 } |
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55 |
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56 |
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57 static int GetPriority(const Json::Value& request) |
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58 { |
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59 static const char* PRIORITY = "Priority"; |
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60 |
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61 if (request.isMember(PRIORITY)) |
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62 { |
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63 if (request[PRIORITY].type() == Json::intValue) |
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64 { |
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65 return request[PRIORITY].asInt(); |
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66 } |
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67 else |
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68 { |
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69 LOG(ERROR) << "Field \"" << PRIORITY << "\" of a modification request should be an integer"; |
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70 throw OrthancException(ErrorCode_BadFileFormat); |
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71 } |
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72 } |
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73 else |
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74 { |
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75 return 0; // Default priority |
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76 } |
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77 } |
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78 |
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79 |
2517 | 80 static void ParseModifyRequest(DicomModification& target, |
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81 int& priority, |
2517 | 82 const RestApiPostCall& call) |
83 { | |
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84 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"},"Priority":9}' |
2517 | 85 |
86 Json::Value request; | |
87 if (call.ParseJsonRequest(request)) | |
88 { | |
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89 priority = GetPriority(request); |
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90 target.ParseModifyRequest(request); |
2517 | 91 } |
92 else | |
93 { | |
94 throw OrthancException(ErrorCode_BadFileFormat); | |
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95 } |
2517 | 96 } |
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97 |
2517 | 98 |
99 static void ParseAnonymizationRequest(DicomModification& target, | |
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100 int& priority, |
2517 | 101 RestApiPostCall& call) |
102 { | |
103 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Remove":["Modality"]}' > Anonymized.dcm | |
104 | |
105 Json::Value request; | |
106 if (call.ParseJsonRequest(request) && | |
107 request.isObject()) | |
108 { | |
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109 priority = GetPriority(request); |
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110 |
2518 | 111 bool patientNameReplaced; |
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112 target.ParseAnonymizationRequest(patientNameReplaced, request); |
2518 | 113 |
114 if (patientNameReplaced) | |
115 { | |
116 // Overwrite the random Patient's Name by one that is more | |
117 // user-friendly (provided none was specified by the user) | |
118 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true); | |
119 } | |
2517 | 120 } |
121 else | |
122 { | |
123 throw OrthancException(ErrorCode_BadFileFormat); | |
124 } | |
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125 } |
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126 |
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127 |
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128 static void AnonymizeOrModifyInstance(DicomModification& modification, |
974 | 129 RestApiPostCall& call) |
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130 { |
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131 std::string id = call.GetUriComponent("id", ""); |
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132 |
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133 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
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134 |
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135 std::auto_ptr<ParsedDicomFile> modified(locker.GetDicom().Clone(true)); |
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136 modification.Apply(*modified); |
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137 modified->Answer(call.GetOutput()); |
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138 } |
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139 |
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140 |
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141 |
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142 static void SubmitJob(std::auto_ptr<DicomModification>& modification, |
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143 bool isAnonymization, |
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144 ResourceType level, |
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145 int priority, |
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146 RestApiPostCall& call) |
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147 { |
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148 ServerContext& context = OrthancRestApi::GetContext(call); |
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149 |
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150 std::auto_ptr<ResourceModificationJob> job(new ResourceModificationJob(context)); |
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151 |
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152 boost::shared_ptr<ResourceModificationJob::Output> output(new ResourceModificationJob::Output(level)); |
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153 job->SetModification(modification.release(), isAnonymization); |
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154 job->SetOutput(output); |
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155 job->SetOrigin(call); |
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156 job->SetDescription("REST API"); |
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157 |
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158 context.AddChildInstances(*job, call.GetUriComponent("id", "")); |
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159 |
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160 if (context.GetJobsEngine().GetRegistry().SubmitAndWait(job.release(), priority)) |
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161 { |
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162 Json::Value json; |
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163 if (output->Format(json)) |
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164 { |
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165 call.GetOutput().AnswerJson(json); |
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166 return; |
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167 } |
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168 } |
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169 |
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170 call.GetOutput().SignalError(HttpStatus_500_InternalServerError); |
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171 } |
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172 |
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173 |
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174 |
974 | 175 static void ModifyInstance(RestApiPostCall& call) |
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176 { |
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177 DicomModification modification; |
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178 modification.SetAllowManualIdentifiers(true); |
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179 |
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180 int priority; |
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181 ParseModifyRequest(modification, priority, call); |
2517 | 182 |
183 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID)) | |
184 { | |
185 modification.SetLevel(ResourceType_Patient); | |
186 } | |
187 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) | |
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188 { |
2517 | 189 modification.SetLevel(ResourceType_Study); |
190 } | |
191 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) | |
192 { | |
193 modification.SetLevel(ResourceType_Series); | |
194 } | |
195 else | |
196 { | |
197 modification.SetLevel(ResourceType_Instance); | |
198 } | |
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199 |
2517 | 200 AnonymizeOrModifyInstance(modification, call); |
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201 } |
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202 |
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203 |
974 | 204 static void AnonymizeInstance(RestApiPostCall& call) |
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205 { |
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206 DicomModification modification; |
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207 modification.SetAllowManualIdentifiers(true); |
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208 |
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209 int priority; |
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210 ParseAnonymizationRequest(modification, priority, call); |
2517 | 211 |
212 AnonymizeOrModifyInstance(modification, call); | |
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213 } |
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214 |
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215 |
2639 | 216 template <enum ResourceType resourceType> |
974 | 217 static void ModifyResource(RestApiPostCall& call) |
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218 { |
2639 | 219 std::auto_ptr<DicomModification> modification(new DicomModification); |
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220 |
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221 int priority; |
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222 ParseModifyRequest(*modification, priority, call); |
2517 | 223 |
2639 | 224 modification->SetLevel(resourceType); |
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225 SubmitJob(modification, false, resourceType, priority, call); |
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226 } |
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227 |
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228 |
2639 | 229 template <enum ResourceType resourceType> |
974 | 230 static void AnonymizeResource(RestApiPostCall& call) |
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231 { |
2639 | 232 std::auto_ptr<DicomModification> modification(new DicomModification); |
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233 |
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234 int priority; |
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235 ParseAnonymizationRequest(*modification, priority, call); |
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236 |
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237 SubmitJob(modification, true, resourceType, priority, call); |
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238 } |
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239 |
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240 |
1569 | 241 static void StoreCreatedInstance(std::string& id /* out */, |
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242 RestApiPostCall& call, |
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243 ParsedDicomFile& dicom) |
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244 { |
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245 DicomInstanceToStore toStore; |
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246 toStore.SetOrigin(DicomInstanceOrigin::FromRest(call)); |
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247 toStore.SetParsedDicomFile(dicom); |
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248 |
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249 ServerContext& context = OrthancRestApi::GetContext(call); |
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250 StoreStatus status = context.Store(id, toStore); |
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251 |
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252 if (status == StoreStatus_Failure) |
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253 { |
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254 throw OrthancException(ErrorCode_CannotStoreInstance); |
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255 } |
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256 } |
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257 |
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258 |
1569 | 259 static void CreateDicomV1(ParsedDicomFile& dicom, |
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260 RestApiPostCall& call, |
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261 const Json::Value& request) |
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262 { |
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263 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}' |
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264 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}' |
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265 |
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266 assert(request.isObject()); |
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267 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom"; |
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268 |
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269 Json::Value::Members members = request.getMemberNames(); |
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270 for (size_t i = 0; i < members.size(); i++) |
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271 { |
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272 const std::string& name = members[i]; |
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273 if (request[name].type() != Json::stringValue) |
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274 { |
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275 throw OrthancException(ErrorCode_CreateDicomNotString); |
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276 } |
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277 |
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278 std::string value = request[name].asString(); |
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279 |
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280 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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281 if (tag == DICOM_TAG_PIXEL_DATA) |
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282 { |
1562 | 283 dicom.EmbedContent(value); |
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284 } |
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285 else |
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286 { |
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287 // This is V1, don't try and decode data URI scheme |
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288 dicom.ReplacePlainString(tag, value); |
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289 } |
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290 } |
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291 } |
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292 |
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293 |
1569 | 294 static void InjectTags(ParsedDicomFile& dicom, |
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295 const Json::Value& tags, |
1689 | 296 bool decodeBinaryTags) |
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297 { |
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298 if (tags.type() != Json::objectValue) |
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299 { |
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300 throw OrthancException(ErrorCode_BadRequest); |
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301 } |
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302 |
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303 // Inject the user-specified tags |
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304 Json::Value::Members members = tags.getMemberNames(); |
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305 for (size_t i = 0; i < members.size(); i++) |
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306 { |
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307 const std::string& name = members[i]; |
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308 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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309 |
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310 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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311 { |
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312 if (tag != DICOM_TAG_PATIENT_ID && |
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313 tag != DICOM_TAG_ACQUISITION_DATE && |
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314 tag != DICOM_TAG_ACQUISITION_TIME && |
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315 tag != DICOM_TAG_CONTENT_DATE && |
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316 tag != DICOM_TAG_CONTENT_TIME && |
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317 tag != DICOM_TAG_INSTANCE_CREATION_DATE && |
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318 tag != DICOM_TAG_INSTANCE_CREATION_TIME && |
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319 tag != DICOM_TAG_SERIES_DATE && |
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320 tag != DICOM_TAG_SERIES_TIME && |
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321 tag != DICOM_TAG_STUDY_DATE && |
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322 tag != DICOM_TAG_STUDY_TIME && |
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323 dicom.HasTag(tag)) |
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324 { |
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325 throw OrthancException(ErrorCode_CreateDicomOverrideTag); |
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326 } |
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327 |
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328 if (tag == DICOM_TAG_PIXEL_DATA) |
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329 { |
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330 throw OrthancException(ErrorCode_CreateDicomUseContent); |
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331 } |
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332 else |
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333 { |
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334 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent); |
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335 } |
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336 } |
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337 } |
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338 } |
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339 |
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340 |
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341 static void CreateSeries(RestApiPostCall& call, |
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342 ParsedDicomFile& base /* in */, |
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343 const Json::Value& content, |
1689 | 344 bool decodeBinaryTags) |
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345 { |
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346 assert(content.isArray()); |
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347 assert(content.size() > 0); |
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348 ServerContext& context = OrthancRestApi::GetContext(call); |
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349 |
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350 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size())); |
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351 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1"); |
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352 |
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353 std::string someInstance; |
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354 |
1566 | 355 try |
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356 { |
1569 | 357 for (Json::ArrayIndex i = 0; i < content.size(); i++) |
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358 { |
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359 std::auto_ptr<ParsedDicomFile> dicom(base.Clone(false)); |
1566 | 360 const Json::Value* payload = NULL; |
361 | |
362 if (content[i].type() == Json::stringValue) | |
363 { | |
364 payload = &content[i]; | |
365 } | |
366 else if (content[i].type() == Json::objectValue) | |
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367 { |
1566 | 368 if (!content[i].isMember("Content")) |
369 { | |
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370 throw OrthancException(ErrorCode_CreateDicomNoPayload); |
1566 | 371 } |
372 | |
373 payload = &content[i]["Content"]; | |
374 | |
1569 | 375 if (content[i].isMember("Tags")) |
1570 | 376 { |
1689 | 377 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags); |
1570 | 378 } |
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379 } |
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380 |
1566 | 381 if (payload == NULL || |
382 payload->type() != Json::stringValue) | |
383 { | |
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384 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1566 | 385 } |
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386 |
1566 | 387 dicom->EmbedContent(payload->asString()); |
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388 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1)); |
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389 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1)); |
1566 | 390 |
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391 StoreCreatedInstance(someInstance, call, *dicom); |
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392 } |
1566 | 393 } |
1616 | 394 catch (OrthancException&) |
1566 | 395 { |
1569 | 396 // Error: Remove the newly-created series |
397 | |
398 std::string series; | |
399 if (context.GetIndex().LookupParent(series, someInstance)) | |
1570 | 400 { |
1569 | 401 Json::Value dummy; |
402 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series); | |
1570 | 403 } |
1569 | 404 |
1616 | 405 throw; |
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406 } |
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407 |
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408 std::string series; |
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409 if (context.GetIndex().LookupParent(series, someInstance)) |
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410 { |
1569 | 411 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success); |
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412 } |
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413 } |
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414 |
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415 |
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416 static void CreateDicomV2(RestApiPostCall& call, |
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417 const Json::Value& request) |
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418 { |
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419 assert(request.isObject()); |
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420 ServerContext& context = OrthancRestApi::GetContext(call); |
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421 |
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422 if (!request.isMember("Tags") || |
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423 request["Tags"].type() != Json::objectValue) |
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424 { |
1569 | 425 throw OrthancException(ErrorCode_BadRequest); |
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426 } |
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427 |
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428 ParsedDicomFile dicom(true); |
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429 |
1557 | 430 { |
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431 Encoding encoding; |
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432 |
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433 if (request["Tags"].isMember("SpecificCharacterSet")) |
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434 { |
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435 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString(); |
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436 if (!GetDicomEncoding(encoding, tmp)) |
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437 { |
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438 LOG(ERROR) << "Unknown specific character set: " << std::string(tmp); |
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439 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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440 } |
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441 } |
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442 else |
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443 { |
2381
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444 encoding = GetDefaultDicomEncoding(); |
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445 } |
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446 |
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447 dicom.SetEncoding(encoding); |
1557 | 448 } |
449 | |
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Creation of DICOM files with encapsulated PDF
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450 ResourceType parentType = ResourceType_Instance; |
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Creation of DICOM files with encapsulated PDF
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451 |
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Creation of DICOM files with encapsulated PDF
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452 if (request.isMember("Parent")) |
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453 { |
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Creation of DICOM files with encapsulated PDF
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454 // Locate the parent tags |
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Creation of DICOM files with encapsulated PDF
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455 std::string parent = request["Parent"].asString(); |
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Creation of DICOM files with encapsulated PDF
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456 if (!context.GetIndex().LookupResourceType(parentType, parent)) |
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457 { |
1582
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458 throw OrthancException(ErrorCode_CreateDicomBadParent); |
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459 } |
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460 |
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Creation of DICOM files with encapsulated PDF
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461 if (parentType == ResourceType_Instance) |
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Creation of DICOM files with encapsulated PDF
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462 { |
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463 throw OrthancException(ErrorCode_CreateDicomParentIsInstance); |
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464 } |
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465 |
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466 // Select one existing child instance of the parent resource, to |
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467 // retrieve all its tags |
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468 Json::Value siblingTags; |
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469 |
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470 { |
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471 // Retrieve all the instances of the parent resource |
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472 std::list<std::string> siblingInstances; |
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473 context.GetIndex().GetChildInstances(siblingInstances, parent); |
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474 |
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475 if (siblingInstances.empty()) |
1569 | 476 { |
477 // Error: No instance (should never happen) | |
478 throw OrthancException(ErrorCode_InternalError); | |
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479 } |
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480 |
2124 | 481 context.ReadDicomAsJson(siblingTags, siblingInstances.front()); |
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482 } |
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483 |
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484 |
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485 // Choose the same encoding as the parent resource |
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486 { |
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487 static const char* SPECIFIC_CHARACTER_SET = "0008,0005"; |
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488 |
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489 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET)) |
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490 { |
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491 Encoding encoding; |
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492 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") || |
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493 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue || |
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494 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString())) |
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495 { |
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496 throw OrthancException(ErrorCode_CreateDicomParentEncoding); |
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497 } |
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498 |
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499 dicom.SetEncoding(encoding); |
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500 } |
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501 } |
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502 |
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503 |
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504 // Retrieve the tags for all the parent modules |
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505 typedef std::set<DicomTag> ModuleTags; |
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506 ModuleTags moduleTags; |
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507 |
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508 ResourceType type = parentType; |
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509 for (;;) |
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510 { |
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Creation of DICOM files with encapsulated PDF
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511 DicomTag::AddTagsForModule(moduleTags, GetModule(type)); |
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512 |
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Creation of DICOM files with encapsulated PDF
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513 if (type == ResourceType_Patient) |
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Creation of DICOM files with encapsulated PDF
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514 { |
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Creation of DICOM files with encapsulated PDF
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515 break; // We're done |
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Creation of DICOM files with encapsulated PDF
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516 } |
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Creation of DICOM files with encapsulated PDF
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517 |
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Creation of DICOM files with encapsulated PDF
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518 // Go up |
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Creation of DICOM files with encapsulated PDF
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519 std::string tmp; |
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Creation of DICOM files with encapsulated PDF
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520 if (!context.GetIndex().LookupParent(tmp, parent)) |
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Creation of DICOM files with encapsulated PDF
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521 { |
1569 | 522 throw OrthancException(ErrorCode_InternalError); |
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523 } |
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524 |
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Creation of DICOM files with encapsulated PDF
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525 parent = tmp; |
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Creation of DICOM files with encapsulated PDF
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526 type = GetParentResourceType(type); |
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Creation of DICOM files with encapsulated PDF
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527 } |
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Creation of DICOM files with encapsulated PDF
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528 |
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Creation of DICOM files with encapsulated PDF
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529 for (ModuleTags::const_iterator it = moduleTags.begin(); |
1616 | 530 it != moduleTags.end(); ++it) |
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531 { |
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Creation of DICOM files with encapsulated PDF
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532 std::string t = it->Format(); |
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Creation of DICOM files with encapsulated PDF
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533 if (siblingTags.isMember(t)) |
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Creation of DICOM files with encapsulated PDF
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534 { |
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Creation of DICOM files with encapsulated PDF
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535 const Json::Value& tag = siblingTags[t]; |
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Creation of DICOM files with encapsulated PDF
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536 if (tag["Type"] == "Null") |
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Creation of DICOM files with encapsulated PDF
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537 { |
1982
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Modification of instances can now replace PixelData
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538 dicom.ReplacePlainString(*it, ""); |
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Creation of DICOM files with encapsulated PDF
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539 } |
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Creation of DICOM files with encapsulated PDF
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540 else if (tag["Type"] == "String") |
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Creation of DICOM files with encapsulated PDF
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541 { |
1557 | 542 std::string value = tag["Value"].asString(); |
1982
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Modification of instances can now replace PixelData
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1934
diff
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543 dicom.ReplacePlainString(*it, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding())); |
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Creation of DICOM files with encapsulated PDF
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544 } |
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Creation of DICOM files with encapsulated PDF
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545 } |
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Creation of DICOM files with encapsulated PDF
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546 } |
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Creation of DICOM files with encapsulated PDF
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547 } |
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Creation of DICOM files with encapsulated PDF
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548 |
1641
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Support of binary tags encoded using data URI scheme
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549 |
1689 | 550 bool decodeBinaryTags = true; |
1641
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551 if (request.isMember("InterpretBinaryTags")) |
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Support of binary tags encoded using data URI scheme
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552 { |
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553 const Json::Value& v = request["InterpretBinaryTags"]; |
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554 if (v.type() != Json::booleanValue) |
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Support of binary tags encoded using data URI scheme
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555 { |
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Support of binary tags encoded using data URI scheme
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556 throw OrthancException(ErrorCode_BadRequest); |
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557 } |
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Support of binary tags encoded using data URI scheme
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558 |
1689 | 559 decodeBinaryTags = v.asBool(); |
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
560 } |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
561 |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
562 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
563 // Inject time-related information |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
564 std::string date, time; |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
565 SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
566 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
567 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
568 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
569 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
570 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
571 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
572 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
573 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
574 parentType == ResourceType_Study || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
575 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
576 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
577 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
578 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
579 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
580 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
581 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
582 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
583 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
584 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
585 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
586 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
587 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
588 |
1689 | 589 InjectTags(dicom, request["Tags"], decodeBinaryTags); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
590 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
591 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
592 // Inject the content (either an image, or a PDF file) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
593 if (request.isMember("Content")) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
594 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
595 const Json::Value& content = request["Content"]; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
596 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
597 if (content.type() == Json::stringValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
598 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
599 dicom.EmbedContent(request["Content"].asString()); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
600 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
601 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
602 else if (content.type() == Json::arrayValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
603 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
604 if (content.size() > 0) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
605 { |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
606 // Let's create a series instead of a single instance |
1689 | 607 CreateSeries(call, dicom, content, decodeBinaryTags); |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
608 return; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
609 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
610 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
611 else |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
612 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
613 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
614 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
615 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
616 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
617 std::string id; |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
618 StoreCreatedInstance(id, call, dicom); |
1569 | 619 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
620 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
621 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
622 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
623 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
624 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
625 static void CreateDicom(RestApiPostCall& call) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
626 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
627 Json::Value request; |
1569 | 628 if (!call.ParseJsonRequest(request) || |
629 !request.isObject()) | |
1570 | 630 { |
631 throw OrthancException(ErrorCode_BadRequest); | |
632 } | |
1569 | 633 |
634 if (request.isMember("Tags")) | |
1570 | 635 { |
636 CreateDicomV2(call, request); | |
637 } | |
1569 | 638 else |
1570 | 639 { |
640 // Compatibility with Orthanc <= 0.9.3 | |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1699
diff
changeset
|
641 ParsedDicomFile dicom(true); |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
642 CreateDicomV1(dicom, call, request); |
1569 | 643 |
1570 | 644 std::string id; |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
645 StoreCreatedInstance(id, call, dicom); |
1570 | 646 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
647 } | |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
648 } |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
649 |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
650 |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
651 void OrthancRestApi::RegisterAnonymizeModify() |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
652 { |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
653 Register("/instances/{id}/modify", ModifyInstance); |
2639 | 654 Register("/series/{id}/modify", ModifyResource<ResourceType_Series>); |
655 Register("/studies/{id}/modify", ModifyResource<ResourceType_Study>); | |
656 Register("/patients/{id}/modify", ModifyResource<ResourceType_Patient>); | |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
657 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
658 Register("/instances/{id}/anonymize", AnonymizeInstance); |
2639 | 659 Register("/series/{id}/anonymize", AnonymizeResource<ResourceType_Series>); |
660 Register("/studies/{id}/anonymize", AnonymizeResource<ResourceType_Study>); | |
661 Register("/patients/{id}/anonymize", AnonymizeResource<ResourceType_Patient>); | |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
662 |
1120
009dce4ea2f6
/tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1010
diff
changeset
|
663 Register("/tools/create-dicom", CreateDicom); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
664 } |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
665 } |