Mercurial > hg > orthanc
annotate OrthancServer/UnitTestsSources/ServerIndexTests.cpp @ 5136:e71b22a43c0b
Threaded modifications continued: call ReconstructInstance at the end of the modification to update the DB model
author | Alain Mazy <am@osimis.io> |
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date | Tue, 17 Jan 2023 17:54:38 +0100 |
parents | 6fed78e13233 |
children | d7274e43ea7c 0ea402b4d901 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU General Public License as |
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10 * published by the Free Software Foundation, either version 3 of the |
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11 * License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU General Public License |
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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22 |
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23 #include "PrecompiledHeadersUnitTests.h" |
4062 | 24 #include <gtest/gtest.h> |
181 | 25 |
4045 | 26 #include "../../OrthancFramework/Sources/Compatibility.h" |
27 #include "../../OrthancFramework/Sources/FileStorage/FilesystemStorage.h" | |
28 #include "../../OrthancFramework/Sources/FileStorage/MemoryStorageArea.h" | |
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29 #include "../../OrthancFramework/Sources/Images/Image.h" |
4045 | 30 #include "../../OrthancFramework/Sources/Logging.h" |
4062 | 31 |
4045 | 32 #include "../Sources/Database/SQLiteDatabaseWrapper.h" |
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33 #include "../Sources/OrthancConfiguration.h" |
4045 | 34 #include "../Sources/Search/DatabaseLookup.h" |
35 #include "../Sources/ServerContext.h" | |
36 #include "../Sources/ServerToolbox.h" | |
183 | 37 |
181 | 38 #include <ctype.h> |
521 | 39 #include <algorithm> |
181 | 40 |
183 | 41 using namespace Orthanc; |
181 | 42 |
183 | 43 namespace |
44 { | |
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45 class TestDatabaseListener : public IDatabaseListener |
181 | 46 { |
47 public: | |
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48 std::vector<std::string> deletedFiles_; |
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49 std::vector<std::string> deletedResources_; |
183 | 50 std::string ancestorId_; |
51 ResourceType ancestorType_; | |
52 | |
53 void Reset() | |
181 | 54 { |
183 | 55 ancestorId_ = ""; |
56 deletedFiles_.clear(); | |
57 } | |
58 | |
59 virtual void SignalRemainingAncestor(ResourceType type, | |
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60 const std::string& publicId) |
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61 ORTHANC_OVERRIDE |
183 | 62 { |
63 ancestorId_ = publicId; | |
64 ancestorType_ = type; | |
181 | 65 } |
66 | |
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67 virtual void SignalAttachmentDeleted(const FileInfo& info) ORTHANC_OVERRIDE |
181 | 68 { |
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69 const std::string fileUuid = info.GetUuid(); |
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70 deletedFiles_.push_back(fileUuid); |
181 | 71 LOG(INFO) << "A file must be removed: " << fileUuid; |
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72 } |
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73 |
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74 virtual void SignalResourceDeleted(ResourceType type, |
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75 const std::string& publicId) ORTHANC_OVERRIDE |
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76 { |
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77 LOG(INFO) << "Deleted resource " << publicId << " of type " << EnumerationToString(type); |
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78 deletedResources_.push_back(publicId); |
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79 } |
181 | 80 }; |
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81 |
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82 |
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83 class DatabaseWrapperTest : public ::testing::Test |
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84 { |
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85 protected: |
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86 std::unique_ptr<TestDatabaseListener> listener_; |
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87 std::unique_ptr<SQLiteDatabaseWrapper> index_; |
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88 std::unique_ptr<SQLiteDatabaseWrapper::UnitTestsTransaction> transaction_; |
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89 |
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90 public: |
738 | 91 DatabaseWrapperTest() |
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92 { |
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93 } |
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94 |
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95 virtual void SetUp() ORTHANC_OVERRIDE |
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96 { |
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97 listener_.reset(new TestDatabaseListener); |
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98 index_.reset(new SQLiteDatabaseWrapper); |
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99 index_->Open(); |
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100 transaction_.reset(dynamic_cast<SQLiteDatabaseWrapper::UnitTestsTransaction*>( |
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101 index_->StartTransaction(TransactionType_ReadWrite, *listener_))); |
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102 } |
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103 |
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104 virtual void TearDown() ORTHANC_OVERRIDE |
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105 { |
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106 transaction_->Commit(0); |
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107 transaction_.reset(); |
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108 |
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109 index_->Close(); |
738 | 110 index_.reset(NULL); |
111 listener_.reset(NULL); | |
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112 } |
1286 | 113 |
114 void CheckTableRecordCount(uint32_t expected, const char* table) | |
115 { | |
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116 ASSERT_EQ(expected, transaction_->GetTableRecordCount(table)); |
1287 | 117 } |
118 | |
119 void CheckNoParent(int64_t id) | |
120 { | |
121 std::string s; | |
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122 ASSERT_FALSE(transaction_->GetParentPublicId(s, id)); |
1287 | 123 } |
124 | |
125 void CheckParentPublicId(const char* expected, int64_t id) | |
126 { | |
127 std::string s; | |
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128 ASSERT_TRUE(transaction_->GetParentPublicId(s, id)); |
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129 ASSERT_EQ(expected, s); |
1286 | 130 } |
131 | |
1287 | 132 void CheckNoChild(int64_t id) |
133 { | |
134 std::list<std::string> j; | |
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135 transaction_->GetChildren(j, id); |
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136 ASSERT_EQ(0u, j.size()); |
1287 | 137 } |
138 | |
139 void CheckOneChild(const char* expected, int64_t id) | |
140 { | |
141 std::list<std::string> j; | |
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142 transaction_->GetChildren(j, id); |
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143 ASSERT_EQ(1u, j.size()); |
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144 ASSERT_EQ(expected, j.front()); |
1287 | 145 } |
146 | |
147 void CheckTwoChildren(const char* expected1, | |
148 const char* expected2, | |
149 int64_t id) | |
150 { | |
151 std::list<std::string> j; | |
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152 transaction_->GetChildren(j, id); |
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153 ASSERT_EQ(2u, j.size()); |
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154 ASSERT_TRUE((expected1 == j.front() && expected2 == j.back()) || |
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155 (expected1 == j.back() && expected2 == j.front())); |
1287 | 156 } |
1746 | 157 |
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158 void DoLookupIdentifier(std::list<std::string>& result, |
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159 ResourceType level, |
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160 const DicomTag& tag, |
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161 ConstraintType type, |
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162 const std::string& value) |
1746 | 163 { |
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164 assert(ServerToolbox::IsIdentifier(tag, level)); |
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165 |
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166 DicomTagConstraint c(tag, type, value, true, true); |
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167 |
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168 std::vector<DatabaseConstraint> lookup; |
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169 lookup.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
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170 |
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171 transaction_->ApplyLookupResources(result, NULL, lookup, level, 0 /* no limit */); |
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172 } |
1746 | 173 |
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174 void DoLookupIdentifier2(std::list<std::string>& result, |
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175 ResourceType level, |
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176 const DicomTag& tag, |
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177 ConstraintType type1, |
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178 const std::string& value1, |
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179 ConstraintType type2, |
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180 const std::string& value2) |
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181 { |
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182 assert(ServerToolbox::IsIdentifier(tag, level)); |
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183 |
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184 DicomTagConstraint c1(tag, type1, value1, true, true); |
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185 DicomTagConstraint c2(tag, type2, value2, true, true); |
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186 |
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187 std::vector<DatabaseConstraint> lookup; |
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188 lookup.push_back(c1.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
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189 lookup.push_back(c2.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
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190 |
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191 transaction_->ApplyLookupResources(result, NULL, lookup, level, 0 /* no limit */); |
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192 } |
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193 }; |
181 | 194 } |
195 | |
196 | |
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197 TEST_F(DatabaseWrapperTest, Simple) |
181 | 198 { |
199 int64_t a[] = { | |
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200 transaction_->CreateResource("a", ResourceType_Patient), // 0 |
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201 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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202 transaction_->CreateResource("c", ResourceType_Series), // 2 |
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203 transaction_->CreateResource("d", ResourceType_Instance), // 3 |
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204 transaction_->CreateResource("e", ResourceType_Instance), // 4 |
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205 transaction_->CreateResource("f", ResourceType_Instance), // 5 |
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206 transaction_->CreateResource("g", ResourceType_Study) // 6 |
181 | 207 }; |
208 | |
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209 ASSERT_EQ("a", transaction_->GetPublicId(a[0])); |
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210 ASSERT_EQ("b", transaction_->GetPublicId(a[1])); |
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211 ASSERT_EQ("c", transaction_->GetPublicId(a[2])); |
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212 ASSERT_EQ("d", transaction_->GetPublicId(a[3])); |
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213 ASSERT_EQ("e", transaction_->GetPublicId(a[4])); |
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214 ASSERT_EQ("f", transaction_->GetPublicId(a[5])); |
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215 ASSERT_EQ("g", transaction_->GetPublicId(a[6])); |
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216 |
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217 ASSERT_EQ(ResourceType_Patient, transaction_->GetResourceType(a[0])); |
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218 ASSERT_EQ(ResourceType_Study, transaction_->GetResourceType(a[1])); |
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219 ASSERT_EQ(ResourceType_Series, transaction_->GetResourceType(a[2])); |
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220 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[3])); |
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221 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[4])); |
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222 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[5])); |
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223 ASSERT_EQ(ResourceType_Study, transaction_->GetResourceType(a[6])); |
304 | 224 |
190 | 225 { |
1241 | 226 std::list<std::string> t; |
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227 transaction_->GetAllPublicIds(t, ResourceType_Patient); |
190 | 228 |
232
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229 ASSERT_EQ(1u, t.size()); |
1241 | 230 ASSERT_EQ("a", t.front()); |
190 | 231 |
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232 transaction_->GetAllPublicIds(t, ResourceType_Series); |
232
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233 ASSERT_EQ(1u, t.size()); |
1241 | 234 ASSERT_EQ("c", t.front()); |
190 | 235 |
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236 transaction_->GetAllPublicIds(t, ResourceType_Study); |
232
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237 ASSERT_EQ(2u, t.size()); |
190 | 238 |
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239 transaction_->GetAllPublicIds(t, ResourceType_Instance); |
232
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240 ASSERT_EQ(3u, t.size()); |
190 | 241 } |
242 | |
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243 transaction_->SetGlobalProperty(GlobalProperty_FlushSleep, true, "World"); |
181 | 244 |
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245 transaction_->AttachChild(a[0], a[1]); |
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246 transaction_->AttachChild(a[1], a[2]); |
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247 transaction_->AttachChild(a[2], a[3]); |
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248 transaction_->AttachChild(a[2], a[4]); |
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249 transaction_->AttachChild(a[6], a[5]); |
182 | 250 |
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251 int64_t parent; |
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252 ASSERT_FALSE(transaction_->LookupParent(parent, a[0])); |
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253 ASSERT_TRUE(transaction_->LookupParent(parent, a[1])); ASSERT_EQ(a[0], parent); |
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254 ASSERT_TRUE(transaction_->LookupParent(parent, a[2])); ASSERT_EQ(a[1], parent); |
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255 ASSERT_TRUE(transaction_->LookupParent(parent, a[3])); ASSERT_EQ(a[2], parent); |
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256 ASSERT_TRUE(transaction_->LookupParent(parent, a[4])); ASSERT_EQ(a[2], parent); |
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257 ASSERT_TRUE(transaction_->LookupParent(parent, a[5])); ASSERT_EQ(a[6], parent); |
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258 ASSERT_FALSE(transaction_->LookupParent(parent, a[6])); |
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259 |
182 | 260 std::string s; |
1286 | 261 |
1287 | 262 CheckNoParent(a[0]); |
263 CheckNoParent(a[6]); | |
264 CheckParentPublicId("a", a[1]); | |
265 CheckParentPublicId("b", a[2]); | |
266 CheckParentPublicId("c", a[3]); | |
267 CheckParentPublicId("c", a[4]); | |
268 CheckParentPublicId("g", a[5]); | |
182 | 269 |
185 | 270 std::list<std::string> l; |
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271 transaction_->GetChildrenPublicId(l, a[0]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("b", l.front()); |
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272 transaction_->GetChildrenPublicId(l, a[1]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("c", l.front()); |
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273 transaction_->GetChildrenPublicId(l, a[3]); ASSERT_EQ(0u, l.size()); |
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274 transaction_->GetChildrenPublicId(l, a[4]); ASSERT_EQ(0u, l.size()); |
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275 transaction_->GetChildrenPublicId(l, a[5]); ASSERT_EQ(0u, l.size()); |
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276 transaction_->GetChildrenPublicId(l, a[6]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("f", l.front()); |
182 | 277 |
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278 transaction_->GetChildrenPublicId(l, a[2]); ASSERT_EQ(2u, l.size()); |
182 | 279 if (l.front() == "d") |
280 { | |
281 ASSERT_EQ("e", l.back()); | |
282 } | |
283 else | |
284 { | |
285 ASSERT_EQ("d", l.back()); | |
286 ASSERT_EQ("e", l.front()); | |
287 } | |
288 | |
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289 std::map<MetadataType, std::string> md; |
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290 transaction_->GetAllMetadata(md, a[4]); |
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291 ASSERT_EQ(0u, md.size()); |
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292 |
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293 transaction_->AddAttachment(a[4], FileInfo("my json file", FileContentType_DicomAsJson, 42, "md5", |
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294 CompressionType_ZlibWithSize, 21, "compressedMD5"), 42); |
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295 transaction_->AddAttachment(a[4], FileInfo("my dicom file", FileContentType_Dicom, 42, "md5"), 43); |
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296 transaction_->AddAttachment(a[6], FileInfo("world", FileContentType_Dicom, 44, "md5"), 44); |
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297 |
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298 // TODO - REVISIONS - "42" is revision number, that is not currently stored (*) |
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299 transaction_->SetMetadata(a[4], MetadataType_RemoteAet, "PINNACLE", 42); |
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300 |
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301 transaction_->GetAllMetadata(md, a[4]); |
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302 ASSERT_EQ(1u, md.size()); |
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303 ASSERT_EQ("PINNACLE", md[MetadataType_RemoteAet]); |
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304 transaction_->SetMetadata(a[4], MetadataType_ModifiedFrom, "TUTU", 10); |
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305 transaction_->GetAllMetadata(md, a[4]); |
438 | 306 ASSERT_EQ(2u, md.size()); |
1030 | 307 |
308 std::map<MetadataType, std::string> md2; | |
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309 transaction_->GetAllMetadata(md2, a[4]); |
1030 | 310 ASSERT_EQ(2u, md2.size()); |
311 ASSERT_EQ("TUTU", md2[MetadataType_ModifiedFrom]); | |
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312 ASSERT_EQ("PINNACLE", md2[MetadataType_RemoteAet]); |
1030 | 313 |
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314 transaction_->DeleteMetadata(a[4], MetadataType_ModifiedFrom); |
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315 transaction_->GetAllMetadata(md, a[4]); |
438 | 316 ASSERT_EQ(1u, md.size()); |
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317 ASSERT_EQ("PINNACLE", md[MetadataType_RemoteAet]); |
182 | 318 |
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319 transaction_->GetAllMetadata(md2, a[4]); |
1030 | 320 ASSERT_EQ(1u, md2.size()); |
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321 ASSERT_EQ("PINNACLE", md2[MetadataType_RemoteAet]); |
1030 | 322 |
323 | |
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324 ASSERT_EQ(21u + 42u + 44u, transaction_->GetTotalCompressedSize()); |
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325 ASSERT_EQ(42u + 42u + 44u, transaction_->GetTotalUncompressedSize()); |
181 | 326 |
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327 transaction_->SetMainDicomTag(a[3], DicomTag(0x0010, 0x0010), "PatientName"); |
181 | 328 |
329 int64_t b; | |
330 ResourceType t; | |
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331 ASSERT_TRUE(transaction_->LookupResource(b, t, "g")); |
181 | 332 ASSERT_EQ(7, b); |
333 ASSERT_EQ(ResourceType_Study, t); | |
334 | |
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335 int64_t revision; |
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336 ASSERT_TRUE(transaction_->LookupMetadata(s, revision, a[4], MetadataType_RemoteAet)); |
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337 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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338 ASSERT_FALSE(transaction_->LookupMetadata(s, revision, a[4], MetadataType_Instance_IndexInSeries)); |
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339 ASSERT_EQ(0, revision); |
181 | 340 ASSERT_EQ("PINNACLE", s); |
1238 | 341 |
342 std::string u; | |
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343 ASSERT_TRUE(transaction_->LookupMetadata(u, revision, a[4], MetadataType_RemoteAet)); |
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344 ASSERT_EQ(0, revision); |
1238 | 345 ASSERT_EQ("PINNACLE", u); |
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346 ASSERT_FALSE(transaction_->LookupMetadata(u, revision, a[4], MetadataType_Instance_IndexInSeries)); |
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347 ASSERT_EQ(0, revision); |
181 | 348 |
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349 ASSERT_TRUE(transaction_->LookupGlobalProperty(s, GlobalProperty_FlushSleep, true)); |
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350 ASSERT_FALSE(transaction_->LookupGlobalProperty(s, static_cast<GlobalProperty>(42), true)); |
181 | 351 ASSERT_EQ("World", s); |
352 | |
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353 FileInfo att; |
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354 ASSERT_TRUE(transaction_->LookupAttachment(att, revision, a[4], FileContentType_DicomAsJson)); |
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355 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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356 ASSERT_EQ("my json file", att.GetUuid()); |
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357 ASSERT_EQ(21u, att.GetCompressedSize()); |
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358 ASSERT_EQ("md5", att.GetUncompressedMD5()); |
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359 ASSERT_EQ("compressedMD5", att.GetCompressedMD5()); |
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360 ASSERT_EQ(42u, att.GetUncompressedSize()); |
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361 ASSERT_EQ(CompressionType_ZlibWithSize, att.GetCompressionType()); |
181 | 362 |
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363 ASSERT_TRUE(transaction_->LookupAttachment(att, revision, a[6], FileContentType_Dicom)); |
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364 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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365 ASSERT_EQ("world", att.GetUuid()); |
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366 ASSERT_EQ(44u, att.GetCompressedSize()); |
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367 ASSERT_EQ("md5", att.GetUncompressedMD5()); |
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368 ASSERT_EQ("md5", att.GetCompressedMD5()); |
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369 ASSERT_EQ(44u, att.GetUncompressedSize()); |
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370 ASSERT_EQ(CompressionType_None, att.GetCompressionType()); |
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371 |
738 | 372 ASSERT_EQ(0u, listener_->deletedFiles_.size()); |
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373 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
1286 | 374 |
375 CheckTableRecordCount(7, "Resources"); | |
376 CheckTableRecordCount(3, "AttachedFiles"); | |
377 CheckTableRecordCount(1, "Metadata"); | |
378 CheckTableRecordCount(1, "MainDicomTags"); | |
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379 |
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380 transaction_->DeleteResource(a[0]); |
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381 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
738 | 382 ASSERT_EQ(2u, listener_->deletedFiles_.size()); |
383 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
384 listener_->deletedFiles_.end(), | |
385 "my json file") == listener_->deletedFiles_.end()); | |
386 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
387 listener_->deletedFiles_.end(), | |
388 "my dicom file") == listener_->deletedFiles_.end()); | |
183 | 389 |
1286 | 390 CheckTableRecordCount(2, "Resources"); |
391 CheckTableRecordCount(0, "Metadata"); | |
392 CheckTableRecordCount(1, "AttachedFiles"); | |
393 CheckTableRecordCount(0, "MainDicomTags"); | |
394 | |
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395 transaction_->DeleteResource(a[5]); |
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396 ASSERT_EQ(7u, listener_->deletedResources_.size()); |
1286 | 397 |
398 CheckTableRecordCount(0, "Resources"); | |
399 CheckTableRecordCount(0, "AttachedFiles"); | |
3121 | 400 CheckTableRecordCount(3, "GlobalProperties"); |
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401 |
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402 std::string tmp; |
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403 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion, true)); |
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404 ASSERT_EQ("6", tmp); |
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405 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_FlushSleep, true)); |
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406 ASSERT_EQ("World", tmp); |
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407 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_GetTotalSizeIsFast, true)); |
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408 ASSERT_EQ("1", tmp); |
183 | 409 |
738 | 410 ASSERT_EQ(3u, listener_->deletedFiles_.size()); |
411 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
412 listener_->deletedFiles_.end(), | |
413 "world") == listener_->deletedFiles_.end()); | |
183 | 414 } |
415 | |
416 | |
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417 TEST_F(DatabaseWrapperTest, Upward) |
183 | 418 { |
419 int64_t a[] = { | |
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420 transaction_->CreateResource("a", ResourceType_Patient), // 0 |
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421 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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422 transaction_->CreateResource("c", ResourceType_Series), // 2 |
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423 transaction_->CreateResource("d", ResourceType_Instance), // 3 |
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424 transaction_->CreateResource("e", ResourceType_Instance), // 4 |
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425 transaction_->CreateResource("f", ResourceType_Study), // 5 |
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426 transaction_->CreateResource("g", ResourceType_Series), // 6 |
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427 transaction_->CreateResource("h", ResourceType_Series) // 7 |
183 | 428 }; |
429 | |
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430 transaction_->AttachChild(a[0], a[1]); |
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431 transaction_->AttachChild(a[1], a[2]); |
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432 transaction_->AttachChild(a[2], a[3]); |
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433 transaction_->AttachChild(a[2], a[4]); |
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434 transaction_->AttachChild(a[1], a[6]); |
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435 transaction_->AttachChild(a[0], a[5]); |
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436 transaction_->AttachChild(a[5], a[7]); |
183 | 437 |
1287 | 438 CheckTwoChildren("b", "f", a[0]); |
439 CheckTwoChildren("c", "g", a[1]); | |
440 CheckTwoChildren("d", "e", a[2]); | |
441 CheckNoChild(a[3]); | |
442 CheckNoChild(a[4]); | |
443 CheckOneChild("h", a[5]); | |
444 CheckNoChild(a[6]); | |
445 CheckNoChild(a[7]); | |
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446 |
738 | 447 listener_->Reset(); |
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448 transaction_->DeleteResource(a[3]); |
738 | 449 ASSERT_EQ("c", listener_->ancestorId_); |
450 ASSERT_EQ(ResourceType_Series, listener_->ancestorType_); | |
183 | 451 |
738 | 452 listener_->Reset(); |
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453 transaction_->DeleteResource(a[4]); |
738 | 454 ASSERT_EQ("b", listener_->ancestorId_); |
455 ASSERT_EQ(ResourceType_Study, listener_->ancestorType_); | |
183 | 456 |
738 | 457 listener_->Reset(); |
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458 transaction_->DeleteResource(a[7]); |
738 | 459 ASSERT_EQ("a", listener_->ancestorId_); |
460 ASSERT_EQ(ResourceType_Patient, listener_->ancestorType_); | |
183 | 461 |
738 | 462 listener_->Reset(); |
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463 transaction_->DeleteResource(a[6]); |
738 | 464 ASSERT_EQ("", listener_->ancestorId_); // No more ancestor |
181 | 465 } |
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466 |
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467 |
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468 TEST_F(DatabaseWrapperTest, PatientRecycling) |
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469 { |
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470 std::vector<int64_t> patients; |
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471 for (int i = 0; i < 10; i++) |
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472 { |
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473 std::string p = "Patient " + boost::lexical_cast<std::string>(i); |
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474 patients.push_back(transaction_->CreateResource(p, ResourceType_Patient)); |
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475 transaction_->AddAttachment(patients[i], FileInfo(p, FileContentType_Dicom, i + 10, |
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476 "md5-" + boost::lexical_cast<std::string>(i)), 42); |
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477 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[i])); |
262
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478 } |
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479 |
1286 | 480 CheckTableRecordCount(10u, "Resources"); |
481 CheckTableRecordCount(10u, "PatientRecyclingOrder"); | |
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482 |
738 | 483 listener_->Reset(); |
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484 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
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485 |
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486 transaction_->DeleteResource(patients[5]); |
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487 transaction_->DeleteResource(patients[0]); |
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488 ASSERT_EQ(2u, listener_->deletedResources_.size()); |
1286 | 489 |
490 CheckTableRecordCount(8u, "Resources"); | |
491 CheckTableRecordCount(8u, "PatientRecyclingOrder"); | |
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492 |
738 | 493 ASSERT_EQ(2u, listener_->deletedFiles_.size()); |
494 ASSERT_EQ("Patient 5", listener_->deletedFiles_[0]); | |
495 ASSERT_EQ("Patient 0", listener_->deletedFiles_[1]); | |
262
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496 |
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497 int64_t p; |
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498 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[1]); |
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499 transaction_->DeleteResource(p); |
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500 ASSERT_EQ(3u, listener_->deletedResources_.size()); |
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501 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[2]); |
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502 transaction_->DeleteResource(p); |
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503 ASSERT_EQ(4u, listener_->deletedResources_.size()); |
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504 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[3]); |
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505 transaction_->DeleteResource(p); |
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506 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
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507 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[4]); |
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508 transaction_->DeleteResource(p); |
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509 ASSERT_EQ(6u, listener_->deletedResources_.size()); |
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510 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[6]); |
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511 transaction_->DeleteResource(p); |
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512 transaction_->DeleteResource(patients[8]); |
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513 ASSERT_EQ(8u, listener_->deletedResources_.size()); |
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514 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[7]); |
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515 transaction_->DeleteResource(p); |
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516 ASSERT_EQ(9u, listener_->deletedResources_.size()); |
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517 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[9]); |
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518 transaction_->DeleteResource(p); |
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519 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p)); |
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520 ASSERT_EQ(10u, listener_->deletedResources_.size()); |
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521 |
738 | 522 ASSERT_EQ(10u, listener_->deletedFiles_.size()); |
1286 | 523 |
524 CheckTableRecordCount(0, "Resources"); | |
525 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
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526 } |
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527 |
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528 |
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529 TEST_F(DatabaseWrapperTest, PatientProtection) |
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530 { |
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531 std::vector<int64_t> patients; |
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532 for (int i = 0; i < 5; i++) |
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533 { |
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534 std::string p = "Patient " + boost::lexical_cast<std::string>(i); |
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535 patients.push_back(transaction_->CreateResource(p, ResourceType_Patient)); |
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536 transaction_->AddAttachment(patients[i], FileInfo(p, FileContentType_Dicom, i + 10, |
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537 "md5-" + boost::lexical_cast<std::string>(i)), 42); |
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538 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[i])); |
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539 } |
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540 |
1286 | 541 CheckTableRecordCount(5, "Resources"); |
542 CheckTableRecordCount(5, "PatientRecyclingOrder"); | |
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543 |
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544 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
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545 transaction_->SetProtectedPatient(patients[2], true); |
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546 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 547 CheckTableRecordCount(5, "Resources"); |
548 CheckTableRecordCount(4, "PatientRecyclingOrder"); | |
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549 |
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550 transaction_->SetProtectedPatient(patients[2], true); |
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551 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 552 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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553 transaction_->SetProtectedPatient(patients[2], false); |
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554 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 555 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
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556 transaction_->SetProtectedPatient(patients[2], false); |
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557 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 558 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
559 CheckTableRecordCount(5, "Resources"); | |
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560 transaction_->SetProtectedPatient(patients[2], true); |
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561 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 562 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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563 transaction_->SetProtectedPatient(patients[2], false); |
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564 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 565 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
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566 transaction_->SetProtectedPatient(patients[3], true); |
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567 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[3])); |
1286 | 568 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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569 |
1286 | 570 CheckTableRecordCount(5, "Resources"); |
738 | 571 ASSERT_EQ(0u, listener_->deletedFiles_.size()); |
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572 |
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573 // Unprotecting a patient puts it at the last position in the recycling queue |
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574 int64_t p; |
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575 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
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576 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[0]); |
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577 transaction_->DeleteResource(p); |
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578 ASSERT_EQ(1u, listener_->deletedResources_.size()); |
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579 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p, patients[1])); ASSERT_EQ(p, patients[4]); |
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580 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[1]); |
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581 transaction_->DeleteResource(p); |
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582 ASSERT_EQ(2u, listener_->deletedResources_.size()); |
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583 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[4]); |
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584 transaction_->DeleteResource(p); |
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585 ASSERT_EQ(3u, listener_->deletedResources_.size()); |
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586 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p, patients[2])); |
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587 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[2]); |
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588 transaction_->DeleteResource(p); |
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589 ASSERT_EQ(4u, listener_->deletedResources_.size()); |
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590 // "patients[3]" is still protected |
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591 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p)); |
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592 |
738 | 593 ASSERT_EQ(4u, listener_->deletedFiles_.size()); |
1286 | 594 CheckTableRecordCount(1, "Resources"); |
595 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
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596 |
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597 transaction_->SetProtectedPatient(patients[3], false); |
1286 | 598 CheckTableRecordCount(1, "PatientRecyclingOrder"); |
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599 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p, patients[3])); |
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600 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p, patients[2])); |
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601 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[3]); |
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602 transaction_->DeleteResource(p); |
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603 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
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604 |
738 | 605 ASSERT_EQ(5u, listener_->deletedFiles_.size()); |
1286 | 606 CheckTableRecordCount(0, "Resources"); |
607 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
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608 } |
310 | 609 |
610 | |
1237 | 611 TEST(ServerIndex, Sequence) |
310 | 612 { |
1237 | 613 const std::string path = "UnitTestsStorage"; |
614 | |
2140 | 615 SystemToolbox::RemoveFile(path + "/index"); |
1237 | 616 FilesystemStorage storage(path); |
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617 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
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618 db.Open(); |
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619 ServerContext context(db, storage, true /* running unit tests */, 10); |
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620 context.SetupJobsEngine(true, false); |
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621 |
1237 | 622 ServerIndex& index = context.GetIndex(); |
623 | |
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differentiating between shared and private global properties
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624 ASSERT_EQ(1u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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625 ASSERT_EQ(2u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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626 ASSERT_EQ(3u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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changeset
|
627 ASSERT_EQ(4u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
1453
c0bdc47165ef
code to warn about possible threading problems
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|
628 |
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changeset
|
629 context.Stop(); |
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|
630 db.Close(); |
310 | 631 } |
521 | 632 |
633 | |
3081
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simplification of unit tests
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parents:
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diff
changeset
|
634 TEST_F(DatabaseWrapperTest, LookupIdentifier) |
521 | 635 { |
636 int64_t a[] = { | |
4591
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
637 transaction_->CreateResource("a", ResourceType_Study), // 0 |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
638 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
639 transaction_->CreateResource("c", ResourceType_Study), // 2 |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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changeset
|
640 transaction_->CreateResource("d", ResourceType_Series) // 3 |
521 | 641 }; |
642 | |
4591
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
643 transaction_->SetIdentifierTag(a[0], DICOM_TAG_STUDY_INSTANCE_UID, "0"); |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
644 transaction_->SetIdentifierTag(a[1], DICOM_TAG_STUDY_INSTANCE_UID, "1"); |
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changeset
|
645 transaction_->SetIdentifierTag(a[2], DICOM_TAG_STUDY_INSTANCE_UID, "0"); |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
646 transaction_->SetIdentifierTag(a[3], DICOM_TAG_SERIES_INSTANCE_UID, "0"); |
521 | 647 |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
648 std::list<std::string> s; |
521 | 649 |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
3019
diff
changeset
|
650 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "0"); |
521 | 651 ASSERT_EQ(2u, s.size()); |
1746 | 652 ASSERT_TRUE(std::find(s.begin(), s.end(), "a") != s.end()); |
653 ASSERT_TRUE(std::find(s.begin(), s.end(), "c") != s.end()); | |
521 | 654 |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
655 DoLookupIdentifier(s, ResourceType_Series, DICOM_TAG_SERIES_INSTANCE_UID, ConstraintType_Equal, "0"); |
1718
2b812969e136
getting rid of an IDatabaseWrapper::LookupIdentifier flavor
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parents:
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diff
changeset
|
656 ASSERT_EQ(1u, s.size()); |
1746 | 657 ASSERT_TRUE(std::find(s.begin(), s.end(), "d") != s.end()); |
521 | 658 |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
659 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "1"); |
521 | 660 ASSERT_EQ(1u, s.size()); |
1746 | 661 ASSERT_TRUE(std::find(s.begin(), s.end(), "b") != s.end()); |
521 | 662 |
3036
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parents:
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diff
changeset
|
663 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "1"); |
521 | 664 ASSERT_EQ(1u, s.size()); |
1746 | 665 ASSERT_TRUE(std::find(s.begin(), s.end(), "b") != s.end()); |
521 | 666 |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
667 DoLookupIdentifier(s, ResourceType_Series, DICOM_TAG_SERIES_INSTANCE_UID, ConstraintType_Equal, "1"); |
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moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
668 ASSERT_EQ(0u, s.size()); |
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moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
669 |
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diff
changeset
|
670 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "0"); |
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moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
671 ASSERT_EQ(3u, s.size()); |
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moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
672 |
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moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
673 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "1"); |
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
674 ASSERT_EQ(1u, s.size()); |
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
675 |
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
676 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "2"); |
1718
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parents:
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diff
changeset
|
677 ASSERT_EQ(0u, s.size()); |
521 | 678 |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
679 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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moving LookupIdentifierQuery to the graveyard
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parents:
3019
diff
changeset
|
680 ConstraintType_GreaterOrEqual, "0", ConstraintType_SmallerOrEqual, "0"); |
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
3019
diff
changeset
|
681 ASSERT_EQ(2u, s.size()); |
1746 | 682 |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
683 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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moving LookupIdentifierQuery to the graveyard
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parents:
3019
diff
changeset
|
684 ConstraintType_GreaterOrEqual, "1", ConstraintType_SmallerOrEqual, "1"); |
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
3019
diff
changeset
|
685 ASSERT_EQ(1u, s.size()); |
1746 | 686 |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
3019
diff
changeset
|
687 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
3019
diff
changeset
|
688 ConstraintType_GreaterOrEqual, "0", ConstraintType_SmallerOrEqual, "1"); |
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
3019
diff
changeset
|
689 ASSERT_EQ(3u, s.size()); |
562
f64e3838d6e1
refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
521
diff
changeset
|
690 } |
705 | 691 |
692 | |
713
9d1973813d8b
test attachment recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
711
diff
changeset
|
693 TEST(ServerIndex, AttachmentRecycling) |
705 | 694 { |
803
4689e400e0fa
directory to store the results of the unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
695 const std::string path = "UnitTestsStorage"; |
1124
790ff7a5b3bf
IStorageArea abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1030
diff
changeset
|
696 |
2140 | 697 SystemToolbox::RemoveFile(path + "/index"); |
1124
790ff7a5b3bf
IStorageArea abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1030
diff
changeset
|
698 FilesystemStorage storage(path); |
3017
517fc4767ae0
renamed class DatabaseWrapper as SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
699 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
1672
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sample database plugin now working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
700 db.Open(); |
2950
dc18d5804746
support of JobsHistorySize set to zero
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
701 ServerContext context(db, storage, true /* running unit tests */, 10); |
2815
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
702 context.SetupJobsEngine(true, false); |
705 | 703 ServerIndex& index = context.GetIndex(); |
707
203157cb4fde
unit tests of httpclient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
706
diff
changeset
|
704 |
706 | 705 index.SetMaximumStorageSize(10); |
706 | |
3174
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3121
diff
changeset
|
707 uint64_t diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances; |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3121
diff
changeset
|
708 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3121
diff
changeset
|
709 countStudies, countSeries, countInstances); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3121
diff
changeset
|
710 |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
711 ASSERT_EQ(0u, countPatients); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
712 ASSERT_EQ(0u, diskSize); |
705 | 713 |
714 ServerIndex::Attachments attachments; | |
715 | |
713
9d1973813d8b
test attachment recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
711
diff
changeset
|
716 std::vector<std::string> ids; |
9d1973813d8b
test attachment recycling
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parents:
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diff
changeset
|
717 for (int i = 0; i < 10; i++) |
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test attachment recycling
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
718 { |
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test attachment recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
719 std::string id = boost::lexical_cast<std::string>(i); |
9d1973813d8b
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parents:
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diff
changeset
|
720 DicomMap instance; |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
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parents:
1971
diff
changeset
|
721 instance.SetValue(DICOM_TAG_PATIENT_ID, "patient-" + id, false); |
655489d9165d
DicomMap::ParseDicomMetaInformation()
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diff
changeset
|
722 instance.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, "study-" + id, false); |
655489d9165d
DicomMap::ParseDicomMetaInformation()
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parents:
1971
diff
changeset
|
723 instance.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, "series-" + id, false); |
655489d9165d
DicomMap::ParseDicomMetaInformation()
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parents:
1971
diff
changeset
|
724 instance.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "instance-" + id, false); |
2208
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2190
diff
changeset
|
725 instance.SetValue(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.1", false); // CR image |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
726 |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
727 ParsedDicomFile dicom(instance, GetDefaultDicomEncoding(), false /* be strict */); |
97d103b57cd1
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parents:
4499
diff
changeset
|
728 |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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parents:
4507
diff
changeset
|
729 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
4505
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parents:
4499
diff
changeset
|
730 |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
731 std::map<MetadataType, std::string> instanceMetadata; |
ac69c9f76c71
refactoring ServerIndex::Store()
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parents:
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diff
changeset
|
732 |
4505
97d103b57cd1
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diff
changeset
|
733 { |
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diff
changeset
|
734 DicomMap summary; |
4508
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Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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diff
changeset
|
735 OrthancConfiguration::DefaultExtractDicomSummary(summary, toStore->GetParsedDicomFile()); |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
736 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
4505
97d103b57cd1
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diff
changeset
|
737 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
738 DicomTransferSyntax transferSyntax; |
4506
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refactoring ServerIndex::Store()
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parents:
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diff
changeset
|
739 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); |
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
740 ASSERT_EQ(StoreStatus_Success, index.Store( |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5039
diff
changeset
|
741 instanceMetadata, summary, attachments, toStore->GetMetadata(), |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
742 toStore->GetOrigin(), false /* don't overwrite */, |
4992 | 743 hasTransferSyntax, transferSyntax, true /* pixel data offset */, 42, false)); |
4505
97d103b57cd1
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parents:
4499
diff
changeset
|
744 } |
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
745 |
4992 | 746 ASSERT_EQ(7u, instanceMetadata.size()); |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
747 ASSERT_TRUE(instanceMetadata.find(MetadataType_RemoteAet) != instanceMetadata.end()); |
1029 | 748 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_ReceptionDate) != instanceMetadata.end()); |
2190 | 749 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_TransferSyntax) != instanceMetadata.end()); |
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750 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_SopClassUid) != instanceMetadata.end()); |
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751 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_PixelDataOffset) != instanceMetadata.end()); |
4992 | 752 ASSERT_TRUE(instanceMetadata.find(MetadataType_MainDicomTagsSignature) != instanceMetadata.end()); |
2190 | 753 |
4499 | 754 ASSERT_EQ("42", instanceMetadata[MetadataType_Instance_PixelDataOffset]); |
755 | |
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756 // The default transfer syntax depends on the OS endianness |
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757 std::string s = instanceMetadata[MetadataType_Instance_TransferSyntax]; |
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758 ASSERT_TRUE(s == "1.2.840.10008.1.2.1" || |
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759 s == "1.2.840.10008.1.2.2"); |
713
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760 |
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761 ASSERT_EQ("1.2.840.10008.5.1.4.1.1.1", instanceMetadata[MetadataType_Instance_SopClassUid]); |
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762 |
713
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763 DicomInstanceHasher hasher(instance); |
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764 ids.push_back(hasher.HashPatient()); |
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765 ids.push_back(hasher.HashStudy()); |
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766 ids.push_back(hasher.HashSeries()); |
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767 ids.push_back(hasher.HashInstance()); |
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768 } |
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769 |
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770 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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771 countStudies, countSeries, countInstances); |
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772 ASSERT_EQ(10u, countPatients); |
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773 ASSERT_EQ(0u, diskSize); |
713
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774 |
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775 for (size_t i = 0; i < ids.size(); i++) |
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776 { |
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777 FileInfo info(Toolbox::GenerateUuid(), FileContentType_Dicom, 1, "md5"); |
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778 int64_t revision = -1; |
4640
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779 index.AddAttachment(revision, info, ids[i], false /* no previous revision */, -1, ""); |
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|
780 ASSERT_EQ(0, revision); |
713
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781 |
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782 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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783 countStudies, countSeries, countInstances); |
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784 ASSERT_GE(10u, diskSize); |
713
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|
785 } |
707
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diff
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|
786 |
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787 // Because the DB is in memory, the SQLite index must not have been created |
2140 | 788 ASSERT_FALSE(SystemToolbox::IsRegularFile(path + "/index")); |
1453
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|
789 |
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|
790 context.Stop(); |
1672
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diff
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|
791 db.Close(); |
705 | 792 } |
1764 | 793 |
794 | |
3036
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moving LookupIdentifierQuery to the graveyard
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795 TEST(ServerIndex, NormalizeIdentifier) |
1764 | 796 { |
2121 | 797 ASSERT_EQ("H^L.LO", ServerToolbox::NormalizeIdentifier(" Hé^l.LO %_ ")); |
798 ASSERT_EQ("1.2.840.113619.2.176.2025", ServerToolbox::NormalizeIdentifier(" 1.2.840.113619.2.176.2025 ")); | |
1764 | 799 } |
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800 |
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801 |
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802 TEST(ServerIndex, Overwrite) |
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803 { |
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804 // Create a dummy 1x1 image |
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805 Image image(PixelFormat_Grayscale8, 1, 1, false); |
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806 reinterpret_cast<uint8_t*>(image.GetBuffer()) [0] = 128; |
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807 |
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808 for (unsigned int i = 0; i < 2; i++) |
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809 { |
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810 bool overwrite = (i == 0); |
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|
811 |
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|
812 MemoryStorageArea storage; |
3017
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|
813 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
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814 db.Open(); |
2950
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diff
changeset
|
815 ServerContext context(db, storage, true /* running unit tests */, 10); |
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816 context.SetupJobsEngine(true, false); |
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817 context.SetCompressionEnabled(true); |
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818 |
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819 DicomMap instance; |
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820 instance.SetValue(DICOM_TAG_PATIENT_ID, "patient", false); |
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821 instance.SetValue(DICOM_TAG_PATIENT_NAME, "name", false); |
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822 instance.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, "study", false); |
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823 instance.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, "series", false); |
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824 instance.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "sop", false); |
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825 instance.SetValue(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.1", false); // CR image |
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|
826 |
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827 DicomInstanceHasher hasher(instance); |
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828 std::string id = hasher.HashInstance(); |
3813
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moving SetOverwriteInstances from ServerIndex to ServerContext
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|
829 context.SetOverwriteInstances(overwrite); |
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830 |
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831 uint64_t diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances; |
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832 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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833 countStudies, countSeries, countInstances); |
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834 |
3179
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835 ASSERT_EQ(0u, countInstances); |
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836 ASSERT_EQ(0u, diskSize); |
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837 |
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|
838 { |
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|
839 ParsedDicomFile dicom(instance, GetDefaultDicomEncoding(), false /* be strict */); |
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|
840 |
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841 // Add a pixel data so as to have one "FileContentType_DicomUntilPixelData" |
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842 // (because of "context.SetCompressionEnabled(true)") |
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843 dicom.EmbedImage(image); |
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844 |
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845 DicomInstanceHasher hasher(instance); |
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|
846 |
4508
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Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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changeset
|
847 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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|
848 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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849 ASSERT_EQ(id, hasher.HashInstance()); |
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850 |
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|
851 std::string id2; |
4796
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added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
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|
852 ServerContext::StoreResult result = context.Store(id2, *toStore, StoreInstanceMode_Default); |
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853 ASSERT_EQ(StoreStatus_Success, result.GetStatus()); |
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854 ASSERT_EQ(id, id2); |
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855 } |
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856 |
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857 { |
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858 FileInfo nope; |
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859 int64_t revision; |
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860 ASSERT_FALSE(context.GetIndex().LookupAttachment(nope, revision, id, FileContentType_DicomAsJson)); |
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861 } |
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862 |
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863 FileInfo dicom1, pixelData1; |
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864 int64_t revision; |
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865 ASSERT_TRUE(context.GetIndex().LookupAttachment(dicom1, revision, id, FileContentType_Dicom)); |
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866 ASSERT_EQ(0, revision); |
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867 revision = -1; |
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868 ASSERT_TRUE(context.GetIndex().LookupAttachment(pixelData1, revision, id, FileContentType_DicomUntilPixelData)); |
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869 ASSERT_EQ(0, revision); |
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870 |
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871 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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872 countStudies, countSeries, countInstances); |
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873 ASSERT_EQ(1u, countInstances); |
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874 ASSERT_EQ(dicom1.GetCompressedSize() + pixelData1.GetCompressedSize(), diskSize); |
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875 ASSERT_EQ(dicom1.GetUncompressedSize() + pixelData1.GetUncompressedSize(), uncompressedSize); |
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876 |
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877 Json::Value tmp; |
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878 context.ReadDicomAsJson(tmp, id); |
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879 ASSERT_EQ("name", tmp["0010,0010"]["Value"].asString()); |
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880 |
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881 { |
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882 ServerContext::DicomCacheLocker locker(context, id); |
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883 std::string tmp; |
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884 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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885 ASSERT_EQ("name", tmp); |
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886 } |
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887 |
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888 { |
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889 DicomMap instance2; |
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890 instance2.Assign(instance); |
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891 instance2.SetValue(DICOM_TAG_PATIENT_NAME, "overwritten", false); |
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892 |
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893 ParsedDicomFile dicom(instance2, GetDefaultDicomEncoding(), false /* be strict */); |
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894 |
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895 // Add a pixel data so as to have one "FileContentType_DicomUntilPixelData" |
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896 dicom.EmbedImage(image); |
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897 |
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|
898 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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|
899 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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900 |
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901 std::string id2; |
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Alain Mazy <am@osimis.io>
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|
902 ServerContext::StoreResult result = context.Store(id2, *toStore, StoreInstanceMode_Default); |
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|
903 ASSERT_EQ(overwrite ? StoreStatus_Success : StoreStatus_AlreadyStored, result.GetStatus()); |
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904 ASSERT_EQ(id, id2); |
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905 } |
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906 |
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907 { |
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908 FileInfo nope; |
4627
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909 int64_t revision; |
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910 ASSERT_FALSE(context.GetIndex().LookupAttachment(nope, revision, id, FileContentType_DicomAsJson)); |
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911 } |
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912 |
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|
913 FileInfo dicom2, pixelData2; |
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914 ASSERT_TRUE(context.GetIndex().LookupAttachment(dicom2, revision, id, FileContentType_Dicom)); |
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|
915 ASSERT_EQ(0, revision); |
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|
916 revision = -1; |
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917 ASSERT_TRUE(context.GetIndex().LookupAttachment(pixelData2, revision, id, FileContentType_DicomUntilPixelData)); |
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|
918 ASSERT_EQ(0, revision); |
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|
919 |
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920 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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921 countStudies, countSeries, countInstances); |
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|
922 ASSERT_EQ(1u, countInstances); |
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|
923 ASSERT_EQ(dicom2.GetCompressedSize() + pixelData2.GetCompressedSize(), diskSize); |
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924 ASSERT_EQ(dicom2.GetUncompressedSize() + pixelData2.GetUncompressedSize(), uncompressedSize); |
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|
925 |
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|
926 if (overwrite) |
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|
927 { |
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|
928 ASSERT_NE(dicom1.GetUuid(), dicom2.GetUuid()); |
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|
929 ASSERT_NE(pixelData1.GetUuid(), pixelData2.GetUuid()); |
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|
930 ASSERT_NE(dicom1.GetUncompressedSize(), dicom2.GetUncompressedSize()); |
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|
931 ASSERT_NE(pixelData1.GetUncompressedSize(), pixelData2.GetUncompressedSize()); |
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|
932 |
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933 context.ReadDicomAsJson(tmp, id); |
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|
934 ASSERT_EQ("overwritten", tmp["0010,0010"]["Value"].asString()); |
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|
935 |
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|
936 { |
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937 ServerContext::DicomCacheLocker locker(context, id); |
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938 std::string tmp; |
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|
939 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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940 ASSERT_EQ("overwritten", tmp); |
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|
941 } |
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|
942 } |
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943 else |
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|
944 { |
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945 ASSERT_EQ(dicom1.GetUuid(), dicom2.GetUuid()); |
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946 ASSERT_EQ(pixelData1.GetUuid(), pixelData2.GetUuid()); |
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947 ASSERT_EQ(dicom1.GetUncompressedSize(), dicom2.GetUncompressedSize()); |
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|
948 ASSERT_EQ(pixelData1.GetUncompressedSize(), pixelData2.GetUncompressedSize()); |
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|
949 |
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950 context.ReadDicomAsJson(tmp, id); |
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951 ASSERT_EQ("name", tmp["0010,0010"]["Value"].asString()); |
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|
952 |
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953 { |
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954 ServerContext::DicomCacheLocker locker(context, id); |
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955 std::string tmp; |
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956 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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957 ASSERT_EQ("name", tmp); |
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958 } |
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959 } |
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960 |
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|
961 context.Stop(); |
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|
962 db.Close(); |
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963 } |
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964 } |
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965 |
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966 |
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967 TEST(ServerIndex, DicomUntilPixelData) |
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968 { |
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969 // Create a dummy 1x1 image |
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970 Image image(PixelFormat_Grayscale8, 1, 1, false); |
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|
971 reinterpret_cast<uint8_t*>(image.GetBuffer()) [0] = 128; |
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972 |
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|
973 for (unsigned int i = 0; i < 2; i++) |
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974 { |
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975 const bool compression = (i == 0); |
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976 |
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977 MemoryStorageArea storage; |
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978 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
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979 db.Open(); |
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980 ServerContext context(db, storage, true /* running unit tests */, 10); |
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981 context.SetupJobsEngine(true, false); |
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982 context.SetCompressionEnabled(compression); |
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983 |
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984 for (unsigned int j = 0; j < 2; j++) |
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985 { |
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986 const bool withPixelData = (j == 0); |
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987 |
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988 ParsedDicomFile dicom(true); |
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989 |
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990 if (withPixelData) |
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991 { |
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992 dicom.EmbedImage(image); |
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993 } |
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994 |
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995 std::string id; |
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996 size_t dicomSize; |
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997 |
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998 { |
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999 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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1000 dicomSize = toStore->GetBufferSize(); |
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1001 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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1002 ServerContext::StoreResult result = context.Store(id, *toStore, StoreInstanceMode_Default); |
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1003 ASSERT_EQ(StoreStatus_Success, result.GetStatus()); |
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1004 } |
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1005 |
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1006 std::set<FileContentType> attachments; |
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1007 context.GetIndex().ListAvailableAttachments(attachments, id, ResourceType_Instance); |
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1008 |
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1009 ASSERT_TRUE(attachments.find(FileContentType_Dicom) != attachments.end()); |
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1010 |
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1011 if (compression && |
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1012 withPixelData) |
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1013 { |
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1014 ASSERT_EQ(2u, attachments.size()); |
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1015 ASSERT_TRUE(attachments.find(FileContentType_DicomUntilPixelData) != attachments.end()); |
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1016 } |
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1017 else |
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1018 { |
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1019 ASSERT_EQ(1u, attachments.size()); |
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1020 } |
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1021 |
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1022 std::string s; |
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1023 int64_t revision; |
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1024 bool found = context.GetIndex().LookupMetadata(s, revision, id, ResourceType_Instance, |
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1025 MetadataType_Instance_PixelDataOffset); |
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1026 |
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1027 if (withPixelData) |
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1028 { |
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1029 ASSERT_TRUE(found); |
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1030 ASSERT_EQ(0, revision); |
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1031 ASSERT_GT(boost::lexical_cast<int>(s), 128 /* length of the DICOM preamble */); |
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1032 ASSERT_LT(boost::lexical_cast<size_t>(s), dicomSize); |
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1033 } |
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1034 else |
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1035 { |
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1036 ASSERT_FALSE(found); |
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1037 } |
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1038 } |
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1039 } |
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1040 } |