Mercurial > hg > orthanc
annotate Core/DicomFormat/DicomIntegerPixelAccessor.cpp @ 1848:e39716f71d67
new main dicom tags
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 01 Dec 2015 13:26:23 +0100 |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "../PrecompiledHeaders.h" |
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34 |
6 | 35 #ifndef NOMINMAX |
2 | 36 #define NOMINMAX |
6 | 37 #endif |
38 | |
627 | 39 #include "DicomIntegerPixelAccessor.h" |
40 | |
79 | 41 #include "../OrthancException.h" |
0 | 42 #include <boost/lexical_cast.hpp> |
2 | 43 #include <limits> |
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44 #include <cassert> |
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45 #include <stdio.h> |
0 | 46 |
62 | 47 namespace Orthanc |
0 | 48 { |
49 DicomIntegerPixelAccessor::DicomIntegerPixelAccessor(const DicomMap& values, | |
50 const void* pixelData, | |
51 size_t size) : | |
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52 information_(values), |
0 | 53 pixelData_(pixelData), |
54 size_(size) | |
55 { | |
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56 frame_ = 0; |
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57 frameOffset_ = (information_.GetHeight() * information_.GetWidth() * |
860 | 58 information_.GetBytesPerValue() * information_.GetChannelCount()); |
0 | 59 |
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60 if (information_.GetNumberOfFrames() * frameOffset_ > size) |
0 | 61 { |
319 | 62 throw OrthancException(ErrorCode_BadFileFormat); |
0 | 63 } |
64 | |
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65 if (information_.IsSigned()) |
0 | 66 { |
537 | 67 // Pixels are signed |
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68 mask_ = (1 << (information_.GetBitsStored() - 1)) - 1; |
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69 signMask_ = (1 << (information_.GetBitsStored() - 1)); |
0 | 70 } |
71 else | |
72 { | |
537 | 73 // Pixels are unsigned |
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74 mask_ = (1 << information_.GetBitsStored()) - 1; |
0 | 75 signMask_ = 0; |
76 } | |
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77 |
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78 if (information_.IsPlanar()) |
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79 { |
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80 /** |
857 | 81 * Each color plane shall be sent contiguously. For RGB images, |
82 * this means the order of the pixel values sent is R1, R2, R3, | |
83 * ..., G1, G2, G3, ..., B1, B2, B3, etc. | |
84 **/ | |
860 | 85 rowOffset_ = information_.GetWidth() * information_.GetBytesPerValue(); |
857 | 86 } |
87 else | |
88 { | |
89 /** | |
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90 * The sample values for the first pixel are followed by the |
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91 * sample values for the second pixel, etc. For RGB images, this |
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92 * means the order of the pixel values sent shall be R1, G1, B1, |
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93 * R2, G2, B2, ..., etc. |
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94 **/ |
860 | 95 rowOffset_ = information_.GetWidth() * information_.GetBytesPerValue() * information_.GetChannelCount(); |
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96 } |
0 | 97 } |
98 | |
99 | |
100 void DicomIntegerPixelAccessor::GetExtremeValues(int32_t& min, | |
101 int32_t& max) const | |
102 { | |
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103 if (information_.GetHeight() == 0 || information_.GetWidth() == 0) |
0 | 104 { |
105 min = max = 0; | |
106 return; | |
107 } | |
108 | |
109 min = std::numeric_limits<int32_t>::max(); | |
110 max = std::numeric_limits<int32_t>::min(); | |
111 | |
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112 for (unsigned int y = 0; y < information_.GetHeight(); y++) |
0 | 113 { |
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114 for (unsigned int x = 0; x < information_.GetWidth(); x++) |
0 | 115 { |
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116 for (unsigned int c = 0; c < information_.GetChannelCount(); c++) |
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117 { |
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118 int32_t v = GetValue(x, y); |
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119 if (v < min) |
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120 min = v; |
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121 if (v > max) |
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122 max = v; |
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123 } |
0 | 124 } |
125 } | |
126 } | |
127 | |
128 | |
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129 int32_t DicomIntegerPixelAccessor::GetValue(unsigned int x, |
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130 unsigned int y, |
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131 unsigned int channel) const |
0 | 132 { |
857 | 133 assert(x < information_.GetWidth() && |
134 y < information_.GetHeight() && | |
135 channel < information_.GetChannelCount()); | |
0 | 136 |
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137 const uint8_t* pixel = reinterpret_cast<const uint8_t*>(pixelData_) + |
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138 y * rowOffset_ + frame_ * frameOffset_; |
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139 |
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140 // https://www.dabsoft.ch/dicom/3/C.7.6.3.1.3/ |
857 | 141 if (information_.IsPlanar()) |
142 { | |
143 /** | |
144 * Each color plane shall be sent contiguously. For RGB images, | |
145 * this means the order of the pixel values sent is R1, R2, R3, | |
146 * ..., G1, G2, G3, ..., B1, B2, B3, etc. | |
147 **/ | |
148 assert(frameOffset_ % information_.GetChannelCount() == 0); | |
860 | 149 pixel += channel * frameOffset_ / information_.GetChannelCount() + x * information_.GetBytesPerValue(); |
857 | 150 } |
151 else | |
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152 { |
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153 /** |
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154 * The sample values for the first pixel are followed by the |
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155 * sample values for the second pixel, etc. For RGB images, this |
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156 * means the order of the pixel values sent shall be R1, G1, B1, |
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157 * R2, G2, B2, ..., etc. |
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158 **/ |
860 | 159 pixel += channel * information_.GetBytesPerValue() + x * information_.GetChannelCount() * information_.GetBytesPerValue(); |
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160 } |
0 | 161 |
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162 uint32_t v; |
0 | 163 v = pixel[0]; |
860 | 164 if (information_.GetBytesPerValue() >= 2) |
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165 v = v + (static_cast<uint32_t>(pixel[1]) << 8); |
860 | 166 if (information_.GetBytesPerValue() >= 3) |
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167 v = v + (static_cast<uint32_t>(pixel[2]) << 16); |
860 | 168 if (information_.GetBytesPerValue() >= 4) |
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169 v = v + (static_cast<uint32_t>(pixel[3]) << 24); |
0 | 170 |
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171 v = v >> information_.GetShift(); |
0 | 172 |
173 if (v & signMask_) | |
174 { | |
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175 // Signed value |
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176 // http://en.wikipedia.org/wiki/Two%27s_complement#Subtraction_from_2N |
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177 return -static_cast<int32_t>(mask_) + static_cast<int32_t>(v & mask_) - 1; |
0 | 178 } |
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179 else |
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180 { |
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181 // Unsigned value |
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182 return static_cast<int32_t>(v & mask_); |
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183 } |
0 | 184 } |
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185 |
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186 |
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187 void DicomIntegerPixelAccessor::SetCurrentFrame(unsigned int frame) |
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188 { |
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189 if (frame >= information_.GetNumberOfFrames()) |
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190 { |
62 | 191 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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192 } |
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193 |
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194 frame_ = frame; |
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195 } |
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196 |
0 | 197 } |