Mercurial > hg > orthanc
annotate OrthancServer/UnitTestsSources/ServerIndexTests.cpp @ 5131:e107ff622e6d
merge
| author | Alain Mazy <am@osimis.io> |
|---|---|
| date | Thu, 05 Jan 2023 17:25:21 +0100 |
| parents | 6fed78e13233 |
| children | d7274e43ea7c 0ea402b4d901 |
| rev | line source |
|---|---|
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU General Public License as |
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10 * published by the Free Software Foundation, either version 3 of the |
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11 * License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU General Public License |
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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22 |
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23 #include "PrecompiledHeadersUnitTests.h" |
| 4062 | 24 #include <gtest/gtest.h> |
| 181 | 25 |
| 4045 | 26 #include "../../OrthancFramework/Sources/Compatibility.h" |
| 27 #include "../../OrthancFramework/Sources/FileStorage/FilesystemStorage.h" | |
| 28 #include "../../OrthancFramework/Sources/FileStorage/MemoryStorageArea.h" | |
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29 #include "../../OrthancFramework/Sources/Images/Image.h" |
| 4045 | 30 #include "../../OrthancFramework/Sources/Logging.h" |
| 4062 | 31 |
| 4045 | 32 #include "../Sources/Database/SQLiteDatabaseWrapper.h" |
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33 #include "../Sources/OrthancConfiguration.h" |
| 4045 | 34 #include "../Sources/Search/DatabaseLookup.h" |
| 35 #include "../Sources/ServerContext.h" | |
| 36 #include "../Sources/ServerToolbox.h" | |
| 183 | 37 |
| 181 | 38 #include <ctype.h> |
| 521 | 39 #include <algorithm> |
| 181 | 40 |
| 183 | 41 using namespace Orthanc; |
| 181 | 42 |
| 183 | 43 namespace |
| 44 { | |
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45 class TestDatabaseListener : public IDatabaseListener |
| 181 | 46 { |
| 47 public: | |
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48 std::vector<std::string> deletedFiles_; |
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49 std::vector<std::string> deletedResources_; |
| 183 | 50 std::string ancestorId_; |
| 51 ResourceType ancestorType_; | |
| 52 | |
| 53 void Reset() | |
| 181 | 54 { |
| 183 | 55 ancestorId_ = ""; |
| 56 deletedFiles_.clear(); | |
| 57 } | |
| 58 | |
| 59 virtual void SignalRemainingAncestor(ResourceType type, | |
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60 const std::string& publicId) |
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61 ORTHANC_OVERRIDE |
| 183 | 62 { |
| 63 ancestorId_ = publicId; | |
| 64 ancestorType_ = type; | |
| 181 | 65 } |
| 66 | |
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67 virtual void SignalAttachmentDeleted(const FileInfo& info) ORTHANC_OVERRIDE |
| 181 | 68 { |
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69 const std::string fileUuid = info.GetUuid(); |
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70 deletedFiles_.push_back(fileUuid); |
| 181 | 71 LOG(INFO) << "A file must be removed: " << fileUuid; |
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72 } |
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73 |
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74 virtual void SignalResourceDeleted(ResourceType type, |
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75 const std::string& publicId) ORTHANC_OVERRIDE |
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76 { |
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77 LOG(INFO) << "Deleted resource " << publicId << " of type " << EnumerationToString(type); |
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78 deletedResources_.push_back(publicId); |
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79 } |
| 181 | 80 }; |
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81 |
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82 |
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83 class DatabaseWrapperTest : public ::testing::Test |
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84 { |
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85 protected: |
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86 std::unique_ptr<TestDatabaseListener> listener_; |
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87 std::unique_ptr<SQLiteDatabaseWrapper> index_; |
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88 std::unique_ptr<SQLiteDatabaseWrapper::UnitTestsTransaction> transaction_; |
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89 |
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90 public: |
| 738 | 91 DatabaseWrapperTest() |
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92 { |
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93 } |
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94 |
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95 virtual void SetUp() ORTHANC_OVERRIDE |
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96 { |
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97 listener_.reset(new TestDatabaseListener); |
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98 index_.reset(new SQLiteDatabaseWrapper); |
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99 index_->Open(); |
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100 transaction_.reset(dynamic_cast<SQLiteDatabaseWrapper::UnitTestsTransaction*>( |
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101 index_->StartTransaction(TransactionType_ReadWrite, *listener_))); |
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102 } |
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103 |
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104 virtual void TearDown() ORTHANC_OVERRIDE |
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105 { |
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106 transaction_->Commit(0); |
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107 transaction_.reset(); |
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108 |
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109 index_->Close(); |
| 738 | 110 index_.reset(NULL); |
| 111 listener_.reset(NULL); | |
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112 } |
| 1286 | 113 |
| 114 void CheckTableRecordCount(uint32_t expected, const char* table) | |
| 115 { | |
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116 ASSERT_EQ(expected, transaction_->GetTableRecordCount(table)); |
| 1287 | 117 } |
| 118 | |
| 119 void CheckNoParent(int64_t id) | |
| 120 { | |
| 121 std::string s; | |
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122 ASSERT_FALSE(transaction_->GetParentPublicId(s, id)); |
| 1287 | 123 } |
| 124 | |
| 125 void CheckParentPublicId(const char* expected, int64_t id) | |
| 126 { | |
| 127 std::string s; | |
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128 ASSERT_TRUE(transaction_->GetParentPublicId(s, id)); |
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129 ASSERT_EQ(expected, s); |
| 1286 | 130 } |
| 131 | |
| 1287 | 132 void CheckNoChild(int64_t id) |
| 133 { | |
| 134 std::list<std::string> j; | |
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135 transaction_->GetChildren(j, id); |
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136 ASSERT_EQ(0u, j.size()); |
| 1287 | 137 } |
| 138 | |
| 139 void CheckOneChild(const char* expected, int64_t id) | |
| 140 { | |
| 141 std::list<std::string> j; | |
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142 transaction_->GetChildren(j, id); |
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143 ASSERT_EQ(1u, j.size()); |
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144 ASSERT_EQ(expected, j.front()); |
| 1287 | 145 } |
| 146 | |
| 147 void CheckTwoChildren(const char* expected1, | |
| 148 const char* expected2, | |
| 149 int64_t id) | |
| 150 { | |
| 151 std::list<std::string> j; | |
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152 transaction_->GetChildren(j, id); |
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153 ASSERT_EQ(2u, j.size()); |
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154 ASSERT_TRUE((expected1 == j.front() && expected2 == j.back()) || |
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155 (expected1 == j.back() && expected2 == j.front())); |
| 1287 | 156 } |
| 1746 | 157 |
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158 void DoLookupIdentifier(std::list<std::string>& result, |
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159 ResourceType level, |
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160 const DicomTag& tag, |
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161 ConstraintType type, |
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162 const std::string& value) |
| 1746 | 163 { |
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164 assert(ServerToolbox::IsIdentifier(tag, level)); |
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165 |
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166 DicomTagConstraint c(tag, type, value, true, true); |
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167 |
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168 std::vector<DatabaseConstraint> lookup; |
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169 lookup.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
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170 |
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171 transaction_->ApplyLookupResources(result, NULL, lookup, level, 0 /* no limit */); |
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172 } |
| 1746 | 173 |
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174 void DoLookupIdentifier2(std::list<std::string>& result, |
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175 ResourceType level, |
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176 const DicomTag& tag, |
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177 ConstraintType type1, |
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178 const std::string& value1, |
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179 ConstraintType type2, |
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180 const std::string& value2) |
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181 { |
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182 assert(ServerToolbox::IsIdentifier(tag, level)); |
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183 |
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184 DicomTagConstraint c1(tag, type1, value1, true, true); |
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185 DicomTagConstraint c2(tag, type2, value2, true, true); |
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186 |
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187 std::vector<DatabaseConstraint> lookup; |
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188 lookup.push_back(c1.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
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189 lookup.push_back(c2.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
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190 |
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191 transaction_->ApplyLookupResources(result, NULL, lookup, level, 0 /* no limit */); |
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192 } |
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193 }; |
| 181 | 194 } |
| 195 | |
| 196 | |
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197 TEST_F(DatabaseWrapperTest, Simple) |
| 181 | 198 { |
| 199 int64_t a[] = { | |
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200 transaction_->CreateResource("a", ResourceType_Patient), // 0 |
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201 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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202 transaction_->CreateResource("c", ResourceType_Series), // 2 |
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203 transaction_->CreateResource("d", ResourceType_Instance), // 3 |
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204 transaction_->CreateResource("e", ResourceType_Instance), // 4 |
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205 transaction_->CreateResource("f", ResourceType_Instance), // 5 |
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206 transaction_->CreateResource("g", ResourceType_Study) // 6 |
| 181 | 207 }; |
| 208 | |
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209 ASSERT_EQ("a", transaction_->GetPublicId(a[0])); |
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210 ASSERT_EQ("b", transaction_->GetPublicId(a[1])); |
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211 ASSERT_EQ("c", transaction_->GetPublicId(a[2])); |
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212 ASSERT_EQ("d", transaction_->GetPublicId(a[3])); |
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213 ASSERT_EQ("e", transaction_->GetPublicId(a[4])); |
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214 ASSERT_EQ("f", transaction_->GetPublicId(a[5])); |
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215 ASSERT_EQ("g", transaction_->GetPublicId(a[6])); |
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216 |
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217 ASSERT_EQ(ResourceType_Patient, transaction_->GetResourceType(a[0])); |
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218 ASSERT_EQ(ResourceType_Study, transaction_->GetResourceType(a[1])); |
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219 ASSERT_EQ(ResourceType_Series, transaction_->GetResourceType(a[2])); |
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220 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[3])); |
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221 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[4])); |
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222 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[5])); |
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223 ASSERT_EQ(ResourceType_Study, transaction_->GetResourceType(a[6])); |
| 304 | 224 |
| 190 | 225 { |
| 1241 | 226 std::list<std::string> t; |
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227 transaction_->GetAllPublicIds(t, ResourceType_Patient); |
| 190 | 228 |
|
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229 ASSERT_EQ(1u, t.size()); |
| 1241 | 230 ASSERT_EQ("a", t.front()); |
| 190 | 231 |
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232 transaction_->GetAllPublicIds(t, ResourceType_Series); |
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233 ASSERT_EQ(1u, t.size()); |
| 1241 | 234 ASSERT_EQ("c", t.front()); |
| 190 | 235 |
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236 transaction_->GetAllPublicIds(t, ResourceType_Study); |
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237 ASSERT_EQ(2u, t.size()); |
| 190 | 238 |
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239 transaction_->GetAllPublicIds(t, ResourceType_Instance); |
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240 ASSERT_EQ(3u, t.size()); |
| 190 | 241 } |
| 242 | |
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243 transaction_->SetGlobalProperty(GlobalProperty_FlushSleep, true, "World"); |
| 181 | 244 |
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245 transaction_->AttachChild(a[0], a[1]); |
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246 transaction_->AttachChild(a[1], a[2]); |
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247 transaction_->AttachChild(a[2], a[3]); |
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248 transaction_->AttachChild(a[2], a[4]); |
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249 transaction_->AttachChild(a[6], a[5]); |
| 182 | 250 |
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251 int64_t parent; |
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252 ASSERT_FALSE(transaction_->LookupParent(parent, a[0])); |
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253 ASSERT_TRUE(transaction_->LookupParent(parent, a[1])); ASSERT_EQ(a[0], parent); |
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254 ASSERT_TRUE(transaction_->LookupParent(parent, a[2])); ASSERT_EQ(a[1], parent); |
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255 ASSERT_TRUE(transaction_->LookupParent(parent, a[3])); ASSERT_EQ(a[2], parent); |
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256 ASSERT_TRUE(transaction_->LookupParent(parent, a[4])); ASSERT_EQ(a[2], parent); |
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257 ASSERT_TRUE(transaction_->LookupParent(parent, a[5])); ASSERT_EQ(a[6], parent); |
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258 ASSERT_FALSE(transaction_->LookupParent(parent, a[6])); |
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259 |
| 182 | 260 std::string s; |
| 1286 | 261 |
| 1287 | 262 CheckNoParent(a[0]); |
| 263 CheckNoParent(a[6]); | |
| 264 CheckParentPublicId("a", a[1]); | |
| 265 CheckParentPublicId("b", a[2]); | |
| 266 CheckParentPublicId("c", a[3]); | |
| 267 CheckParentPublicId("c", a[4]); | |
| 268 CheckParentPublicId("g", a[5]); | |
| 182 | 269 |
| 185 | 270 std::list<std::string> l; |
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271 transaction_->GetChildrenPublicId(l, a[0]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("b", l.front()); |
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272 transaction_->GetChildrenPublicId(l, a[1]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("c", l.front()); |
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273 transaction_->GetChildrenPublicId(l, a[3]); ASSERT_EQ(0u, l.size()); |
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274 transaction_->GetChildrenPublicId(l, a[4]); ASSERT_EQ(0u, l.size()); |
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275 transaction_->GetChildrenPublicId(l, a[5]); ASSERT_EQ(0u, l.size()); |
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276 transaction_->GetChildrenPublicId(l, a[6]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("f", l.front()); |
| 182 | 277 |
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278 transaction_->GetChildrenPublicId(l, a[2]); ASSERT_EQ(2u, l.size()); |
| 182 | 279 if (l.front() == "d") |
| 280 { | |
| 281 ASSERT_EQ("e", l.back()); | |
| 282 } | |
| 283 else | |
| 284 { | |
| 285 ASSERT_EQ("d", l.back()); | |
| 286 ASSERT_EQ("e", l.front()); | |
| 287 } | |
| 288 | |
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289 std::map<MetadataType, std::string> md; |
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290 transaction_->GetAllMetadata(md, a[4]); |
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291 ASSERT_EQ(0u, md.size()); |
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292 |
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293 transaction_->AddAttachment(a[4], FileInfo("my json file", FileContentType_DicomAsJson, 42, "md5", |
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294 CompressionType_ZlibWithSize, 21, "compressedMD5"), 42); |
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295 transaction_->AddAttachment(a[4], FileInfo("my dicom file", FileContentType_Dicom, 42, "md5"), 43); |
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296 transaction_->AddAttachment(a[6], FileInfo("world", FileContentType_Dicom, 44, "md5"), 44); |
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297 |
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298 // TODO - REVISIONS - "42" is revision number, that is not currently stored (*) |
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299 transaction_->SetMetadata(a[4], MetadataType_RemoteAet, "PINNACLE", 42); |
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300 |
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301 transaction_->GetAllMetadata(md, a[4]); |
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302 ASSERT_EQ(1u, md.size()); |
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303 ASSERT_EQ("PINNACLE", md[MetadataType_RemoteAet]); |
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304 transaction_->SetMetadata(a[4], MetadataType_ModifiedFrom, "TUTU", 10); |
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305 transaction_->GetAllMetadata(md, a[4]); |
| 438 | 306 ASSERT_EQ(2u, md.size()); |
| 1030 | 307 |
| 308 std::map<MetadataType, std::string> md2; | |
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309 transaction_->GetAllMetadata(md2, a[4]); |
| 1030 | 310 ASSERT_EQ(2u, md2.size()); |
| 311 ASSERT_EQ("TUTU", md2[MetadataType_ModifiedFrom]); | |
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312 ASSERT_EQ("PINNACLE", md2[MetadataType_RemoteAet]); |
| 1030 | 313 |
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314 transaction_->DeleteMetadata(a[4], MetadataType_ModifiedFrom); |
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315 transaction_->GetAllMetadata(md, a[4]); |
| 438 | 316 ASSERT_EQ(1u, md.size()); |
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317 ASSERT_EQ("PINNACLE", md[MetadataType_RemoteAet]); |
| 182 | 318 |
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319 transaction_->GetAllMetadata(md2, a[4]); |
| 1030 | 320 ASSERT_EQ(1u, md2.size()); |
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321 ASSERT_EQ("PINNACLE", md2[MetadataType_RemoteAet]); |
| 1030 | 322 |
| 323 | |
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324 ASSERT_EQ(21u + 42u + 44u, transaction_->GetTotalCompressedSize()); |
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325 ASSERT_EQ(42u + 42u + 44u, transaction_->GetTotalUncompressedSize()); |
| 181 | 326 |
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327 transaction_->SetMainDicomTag(a[3], DicomTag(0x0010, 0x0010), "PatientName"); |
| 181 | 328 |
| 329 int64_t b; | |
| 330 ResourceType t; | |
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331 ASSERT_TRUE(transaction_->LookupResource(b, t, "g")); |
| 181 | 332 ASSERT_EQ(7, b); |
| 333 ASSERT_EQ(ResourceType_Study, t); | |
| 334 | |
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335 int64_t revision; |
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336 ASSERT_TRUE(transaction_->LookupMetadata(s, revision, a[4], MetadataType_RemoteAet)); |
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337 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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338 ASSERT_FALSE(transaction_->LookupMetadata(s, revision, a[4], MetadataType_Instance_IndexInSeries)); |
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339 ASSERT_EQ(0, revision); |
| 181 | 340 ASSERT_EQ("PINNACLE", s); |
| 1238 | 341 |
| 342 std::string u; | |
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343 ASSERT_TRUE(transaction_->LookupMetadata(u, revision, a[4], MetadataType_RemoteAet)); |
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344 ASSERT_EQ(0, revision); |
| 1238 | 345 ASSERT_EQ("PINNACLE", u); |
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346 ASSERT_FALSE(transaction_->LookupMetadata(u, revision, a[4], MetadataType_Instance_IndexInSeries)); |
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347 ASSERT_EQ(0, revision); |
| 181 | 348 |
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349 ASSERT_TRUE(transaction_->LookupGlobalProperty(s, GlobalProperty_FlushSleep, true)); |
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350 ASSERT_FALSE(transaction_->LookupGlobalProperty(s, static_cast<GlobalProperty>(42), true)); |
| 181 | 351 ASSERT_EQ("World", s); |
| 352 | |
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353 FileInfo att; |
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354 ASSERT_TRUE(transaction_->LookupAttachment(att, revision, a[4], FileContentType_DicomAsJson)); |
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355 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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356 ASSERT_EQ("my json file", att.GetUuid()); |
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357 ASSERT_EQ(21u, att.GetCompressedSize()); |
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358 ASSERT_EQ("md5", att.GetUncompressedMD5()); |
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359 ASSERT_EQ("compressedMD5", att.GetCompressedMD5()); |
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360 ASSERT_EQ(42u, att.GetUncompressedSize()); |
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361 ASSERT_EQ(CompressionType_ZlibWithSize, att.GetCompressionType()); |
| 181 | 362 |
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363 ASSERT_TRUE(transaction_->LookupAttachment(att, revision, a[6], FileContentType_Dicom)); |
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364 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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365 ASSERT_EQ("world", att.GetUuid()); |
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366 ASSERT_EQ(44u, att.GetCompressedSize()); |
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367 ASSERT_EQ("md5", att.GetUncompressedMD5()); |
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368 ASSERT_EQ("md5", att.GetCompressedMD5()); |
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369 ASSERT_EQ(44u, att.GetUncompressedSize()); |
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370 ASSERT_EQ(CompressionType_None, att.GetCompressionType()); |
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371 |
| 738 | 372 ASSERT_EQ(0u, listener_->deletedFiles_.size()); |
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373 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
| 1286 | 374 |
| 375 CheckTableRecordCount(7, "Resources"); | |
| 376 CheckTableRecordCount(3, "AttachedFiles"); | |
| 377 CheckTableRecordCount(1, "Metadata"); | |
| 378 CheckTableRecordCount(1, "MainDicomTags"); | |
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379 |
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380 transaction_->DeleteResource(a[0]); |
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381 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
| 738 | 382 ASSERT_EQ(2u, listener_->deletedFiles_.size()); |
| 383 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
| 384 listener_->deletedFiles_.end(), | |
| 385 "my json file") == listener_->deletedFiles_.end()); | |
| 386 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
| 387 listener_->deletedFiles_.end(), | |
| 388 "my dicom file") == listener_->deletedFiles_.end()); | |
| 183 | 389 |
| 1286 | 390 CheckTableRecordCount(2, "Resources"); |
| 391 CheckTableRecordCount(0, "Metadata"); | |
| 392 CheckTableRecordCount(1, "AttachedFiles"); | |
| 393 CheckTableRecordCount(0, "MainDicomTags"); | |
| 394 | |
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395 transaction_->DeleteResource(a[5]); |
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396 ASSERT_EQ(7u, listener_->deletedResources_.size()); |
| 1286 | 397 |
| 398 CheckTableRecordCount(0, "Resources"); | |
| 399 CheckTableRecordCount(0, "AttachedFiles"); | |
| 3121 | 400 CheckTableRecordCount(3, "GlobalProperties"); |
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401 |
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402 std::string tmp; |
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403 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion, true)); |
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404 ASSERT_EQ("6", tmp); |
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405 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_FlushSleep, true)); |
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406 ASSERT_EQ("World", tmp); |
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407 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_GetTotalSizeIsFast, true)); |
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408 ASSERT_EQ("1", tmp); |
| 183 | 409 |
| 738 | 410 ASSERT_EQ(3u, listener_->deletedFiles_.size()); |
| 411 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
| 412 listener_->deletedFiles_.end(), | |
| 413 "world") == listener_->deletedFiles_.end()); | |
| 183 | 414 } |
| 415 | |
| 416 | |
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417 TEST_F(DatabaseWrapperTest, Upward) |
| 183 | 418 { |
| 419 int64_t a[] = { | |
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420 transaction_->CreateResource("a", ResourceType_Patient), // 0 |
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421 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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422 transaction_->CreateResource("c", ResourceType_Series), // 2 |
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423 transaction_->CreateResource("d", ResourceType_Instance), // 3 |
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424 transaction_->CreateResource("e", ResourceType_Instance), // 4 |
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425 transaction_->CreateResource("f", ResourceType_Study), // 5 |
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426 transaction_->CreateResource("g", ResourceType_Series), // 6 |
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427 transaction_->CreateResource("h", ResourceType_Series) // 7 |
| 183 | 428 }; |
| 429 | |
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430 transaction_->AttachChild(a[0], a[1]); |
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431 transaction_->AttachChild(a[1], a[2]); |
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432 transaction_->AttachChild(a[2], a[3]); |
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433 transaction_->AttachChild(a[2], a[4]); |
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434 transaction_->AttachChild(a[1], a[6]); |
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435 transaction_->AttachChild(a[0], a[5]); |
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436 transaction_->AttachChild(a[5], a[7]); |
| 183 | 437 |
| 1287 | 438 CheckTwoChildren("b", "f", a[0]); |
| 439 CheckTwoChildren("c", "g", a[1]); | |
| 440 CheckTwoChildren("d", "e", a[2]); | |
| 441 CheckNoChild(a[3]); | |
| 442 CheckNoChild(a[4]); | |
| 443 CheckOneChild("h", a[5]); | |
| 444 CheckNoChild(a[6]); | |
| 445 CheckNoChild(a[7]); | |
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446 |
| 738 | 447 listener_->Reset(); |
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448 transaction_->DeleteResource(a[3]); |
| 738 | 449 ASSERT_EQ("c", listener_->ancestorId_); |
| 450 ASSERT_EQ(ResourceType_Series, listener_->ancestorType_); | |
| 183 | 451 |
| 738 | 452 listener_->Reset(); |
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453 transaction_->DeleteResource(a[4]); |
| 738 | 454 ASSERT_EQ("b", listener_->ancestorId_); |
| 455 ASSERT_EQ(ResourceType_Study, listener_->ancestorType_); | |
| 183 | 456 |
| 738 | 457 listener_->Reset(); |
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458 transaction_->DeleteResource(a[7]); |
| 738 | 459 ASSERT_EQ("a", listener_->ancestorId_); |
| 460 ASSERT_EQ(ResourceType_Patient, listener_->ancestorType_); | |
| 183 | 461 |
| 738 | 462 listener_->Reset(); |
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463 transaction_->DeleteResource(a[6]); |
| 738 | 464 ASSERT_EQ("", listener_->ancestorId_); // No more ancestor |
| 181 | 465 } |
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466 |
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467 |
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468 TEST_F(DatabaseWrapperTest, PatientRecycling) |
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469 { |
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470 std::vector<int64_t> patients; |
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471 for (int i = 0; i < 10; i++) |
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472 { |
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473 std::string p = "Patient " + boost::lexical_cast<std::string>(i); |
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474 patients.push_back(transaction_->CreateResource(p, ResourceType_Patient)); |
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475 transaction_->AddAttachment(patients[i], FileInfo(p, FileContentType_Dicom, i + 10, |
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476 "md5-" + boost::lexical_cast<std::string>(i)), 42); |
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477 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[i])); |
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478 } |
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479 |
| 1286 | 480 CheckTableRecordCount(10u, "Resources"); |
| 481 CheckTableRecordCount(10u, "PatientRecyclingOrder"); | |
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482 |
| 738 | 483 listener_->Reset(); |
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484 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
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485 |
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486 transaction_->DeleteResource(patients[5]); |
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487 transaction_->DeleteResource(patients[0]); |
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488 ASSERT_EQ(2u, listener_->deletedResources_.size()); |
| 1286 | 489 |
| 490 CheckTableRecordCount(8u, "Resources"); | |
| 491 CheckTableRecordCount(8u, "PatientRecyclingOrder"); | |
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492 |
| 738 | 493 ASSERT_EQ(2u, listener_->deletedFiles_.size()); |
| 494 ASSERT_EQ("Patient 5", listener_->deletedFiles_[0]); | |
| 495 ASSERT_EQ("Patient 0", listener_->deletedFiles_[1]); | |
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496 |
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497 int64_t p; |
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498 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[1]); |
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499 transaction_->DeleteResource(p); |
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500 ASSERT_EQ(3u, listener_->deletedResources_.size()); |
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501 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[2]); |
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502 transaction_->DeleteResource(p); |
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503 ASSERT_EQ(4u, listener_->deletedResources_.size()); |
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504 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[3]); |
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505 transaction_->DeleteResource(p); |
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506 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
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507 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[4]); |
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508 transaction_->DeleteResource(p); |
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509 ASSERT_EQ(6u, listener_->deletedResources_.size()); |
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510 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[6]); |
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511 transaction_->DeleteResource(p); |
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512 transaction_->DeleteResource(patients[8]); |
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513 ASSERT_EQ(8u, listener_->deletedResources_.size()); |
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514 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[7]); |
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515 transaction_->DeleteResource(p); |
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516 ASSERT_EQ(9u, listener_->deletedResources_.size()); |
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517 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[9]); |
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518 transaction_->DeleteResource(p); |
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519 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p)); |
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520 ASSERT_EQ(10u, listener_->deletedResources_.size()); |
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521 |
| 738 | 522 ASSERT_EQ(10u, listener_->deletedFiles_.size()); |
| 1286 | 523 |
| 524 CheckTableRecordCount(0, "Resources"); | |
| 525 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
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526 } |
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527 |
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528 |
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529 TEST_F(DatabaseWrapperTest, PatientProtection) |
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530 { |
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531 std::vector<int64_t> patients; |
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532 for (int i = 0; i < 5; i++) |
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533 { |
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534 std::string p = "Patient " + boost::lexical_cast<std::string>(i); |
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535 patients.push_back(transaction_->CreateResource(p, ResourceType_Patient)); |
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536 transaction_->AddAttachment(patients[i], FileInfo(p, FileContentType_Dicom, i + 10, |
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537 "md5-" + boost::lexical_cast<std::string>(i)), 42); |
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538 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[i])); |
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539 } |
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540 |
| 1286 | 541 CheckTableRecordCount(5, "Resources"); |
| 542 CheckTableRecordCount(5, "PatientRecyclingOrder"); | |
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543 |
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544 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
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545 transaction_->SetProtectedPatient(patients[2], true); |
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546 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
| 1286 | 547 CheckTableRecordCount(5, "Resources"); |
| 548 CheckTableRecordCount(4, "PatientRecyclingOrder"); | |
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549 |
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550 transaction_->SetProtectedPatient(patients[2], true); |
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551 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
| 1286 | 552 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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553 transaction_->SetProtectedPatient(patients[2], false); |
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554 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
| 1286 | 555 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
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556 transaction_->SetProtectedPatient(patients[2], false); |
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557 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
| 1286 | 558 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
| 559 CheckTableRecordCount(5, "Resources"); | |
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560 transaction_->SetProtectedPatient(patients[2], true); |
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561 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
| 1286 | 562 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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563 transaction_->SetProtectedPatient(patients[2], false); |
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564 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
| 1286 | 565 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
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566 transaction_->SetProtectedPatient(patients[3], true); |
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567 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[3])); |
| 1286 | 568 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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569 |
| 1286 | 570 CheckTableRecordCount(5, "Resources"); |
| 738 | 571 ASSERT_EQ(0u, listener_->deletedFiles_.size()); |
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572 |
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573 // Unprotecting a patient puts it at the last position in the recycling queue |
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574 int64_t p; |
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575 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
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576 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[0]); |
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577 transaction_->DeleteResource(p); |
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578 ASSERT_EQ(1u, listener_->deletedResources_.size()); |
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579 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p, patients[1])); ASSERT_EQ(p, patients[4]); |
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580 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[1]); |
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581 transaction_->DeleteResource(p); |
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582 ASSERT_EQ(2u, listener_->deletedResources_.size()); |
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583 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[4]); |
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584 transaction_->DeleteResource(p); |
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585 ASSERT_EQ(3u, listener_->deletedResources_.size()); |
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586 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p, patients[2])); |
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587 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[2]); |
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588 transaction_->DeleteResource(p); |
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589 ASSERT_EQ(4u, listener_->deletedResources_.size()); |
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590 // "patients[3]" is still protected |
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591 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p)); |
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592 |
| 738 | 593 ASSERT_EQ(4u, listener_->deletedFiles_.size()); |
| 1286 | 594 CheckTableRecordCount(1, "Resources"); |
| 595 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
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596 |
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597 transaction_->SetProtectedPatient(patients[3], false); |
| 1286 | 598 CheckTableRecordCount(1, "PatientRecyclingOrder"); |
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599 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p, patients[3])); |
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600 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p, patients[2])); |
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601 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[3]); |
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602 transaction_->DeleteResource(p); |
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603 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
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604 |
| 738 | 605 ASSERT_EQ(5u, listener_->deletedFiles_.size()); |
| 1286 | 606 CheckTableRecordCount(0, "Resources"); |
| 607 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
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608 } |
| 310 | 609 |
| 610 | |
| 1237 | 611 TEST(ServerIndex, Sequence) |
| 310 | 612 { |
| 1237 | 613 const std::string path = "UnitTestsStorage"; |
| 614 | |
| 2140 | 615 SystemToolbox::RemoveFile(path + "/index"); |
| 1237 | 616 FilesystemStorage storage(path); |
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617 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
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618 db.Open(); |
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619 ServerContext context(db, storage, true /* running unit tests */, 10); |
|
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620 context.SetupJobsEngine(true, false); |
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621 |
| 1237 | 622 ServerIndex& index = context.GetIndex(); |
| 623 | |
|
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624 ASSERT_EQ(1u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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625 ASSERT_EQ(2u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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626 ASSERT_EQ(3u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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627 ASSERT_EQ(4u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
|
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628 |
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629 context.Stop(); |
|
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630 db.Close(); |
| 310 | 631 } |
| 521 | 632 |
| 633 | |
|
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634 TEST_F(DatabaseWrapperTest, LookupIdentifier) |
| 521 | 635 { |
| 636 int64_t a[] = { | |
|
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637 transaction_->CreateResource("a", ResourceType_Study), // 0 |
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638 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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639 transaction_->CreateResource("c", ResourceType_Study), // 2 |
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640 transaction_->CreateResource("d", ResourceType_Series) // 3 |
| 521 | 641 }; |
| 642 | |
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643 transaction_->SetIdentifierTag(a[0], DICOM_TAG_STUDY_INSTANCE_UID, "0"); |
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644 transaction_->SetIdentifierTag(a[1], DICOM_TAG_STUDY_INSTANCE_UID, "1"); |
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645 transaction_->SetIdentifierTag(a[2], DICOM_TAG_STUDY_INSTANCE_UID, "0"); |
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646 transaction_->SetIdentifierTag(a[3], DICOM_TAG_SERIES_INSTANCE_UID, "0"); |
| 521 | 647 |
|
3075
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|
648 std::list<std::string> s; |
| 521 | 649 |
|
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650 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "0"); |
| 521 | 651 ASSERT_EQ(2u, s.size()); |
| 1746 | 652 ASSERT_TRUE(std::find(s.begin(), s.end(), "a") != s.end()); |
| 653 ASSERT_TRUE(std::find(s.begin(), s.end(), "c") != s.end()); | |
| 521 | 654 |
|
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655 DoLookupIdentifier(s, ResourceType_Series, DICOM_TAG_SERIES_INSTANCE_UID, ConstraintType_Equal, "0"); |
|
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656 ASSERT_EQ(1u, s.size()); |
| 1746 | 657 ASSERT_TRUE(std::find(s.begin(), s.end(), "d") != s.end()); |
| 521 | 658 |
|
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659 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "1"); |
| 521 | 660 ASSERT_EQ(1u, s.size()); |
| 1746 | 661 ASSERT_TRUE(std::find(s.begin(), s.end(), "b") != s.end()); |
| 521 | 662 |
|
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663 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "1"); |
| 521 | 664 ASSERT_EQ(1u, s.size()); |
| 1746 | 665 ASSERT_TRUE(std::find(s.begin(), s.end(), "b") != s.end()); |
| 521 | 666 |
|
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|
667 DoLookupIdentifier(s, ResourceType_Series, DICOM_TAG_SERIES_INSTANCE_UID, ConstraintType_Equal, "1"); |
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668 ASSERT_EQ(0u, s.size()); |
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|
669 |
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670 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "0"); |
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671 ASSERT_EQ(3u, s.size()); |
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672 |
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673 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "1"); |
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674 ASSERT_EQ(1u, s.size()); |
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675 |
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676 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "2"); |
|
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677 ASSERT_EQ(0u, s.size()); |
| 521 | 678 |
|
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679 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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680 ConstraintType_GreaterOrEqual, "0", ConstraintType_SmallerOrEqual, "0"); |
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681 ASSERT_EQ(2u, s.size()); |
| 1746 | 682 |
|
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|
683 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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684 ConstraintType_GreaterOrEqual, "1", ConstraintType_SmallerOrEqual, "1"); |
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|
685 ASSERT_EQ(1u, s.size()); |
| 1746 | 686 |
|
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|
687 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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|
688 ConstraintType_GreaterOrEqual, "0", ConstraintType_SmallerOrEqual, "1"); |
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689 ASSERT_EQ(3u, s.size()); |
|
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|
690 } |
| 705 | 691 |
| 692 | |
|
713
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|
693 TEST(ServerIndex, AttachmentRecycling) |
| 705 | 694 { |
|
803
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directory to store the results of the unit tests
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|
695 const std::string path = "UnitTestsStorage"; |
|
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696 |
| 2140 | 697 SystemToolbox::RemoveFile(path + "/index"); |
|
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|
698 FilesystemStorage storage(path); |
|
3017
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699 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
|
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700 db.Open(); |
|
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701 ServerContext context(db, storage, true /* running unit tests */, 10); |
|
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changeset
|
702 context.SetupJobsEngine(true, false); |
| 705 | 703 ServerIndex& index = context.GetIndex(); |
|
707
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diff
changeset
|
704 |
| 706 | 705 index.SetMaximumStorageSize(10); |
| 706 | |
|
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changeset
|
707 uint64_t diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances; |
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708 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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709 countStudies, countSeries, countInstances); |
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710 |
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711 ASSERT_EQ(0u, countPatients); |
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|
712 ASSERT_EQ(0u, diskSize); |
| 705 | 713 |
| 714 ServerIndex::Attachments attachments; | |
| 715 | |
|
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716 std::vector<std::string> ids; |
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717 for (int i = 0; i < 10; i++) |
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718 { |
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719 std::string id = boost::lexical_cast<std::string>(i); |
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720 DicomMap instance; |
|
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|
721 instance.SetValue(DICOM_TAG_PATIENT_ID, "patient-" + id, false); |
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DicomMap::ParseDicomMetaInformation()
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|
722 instance.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, "study-" + id, false); |
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changeset
|
723 instance.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, "series-" + id, false); |
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changeset
|
724 instance.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "instance-" + id, false); |
|
2208
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changeset
|
725 instance.SetValue(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.1", false); // CR image |
|
1006
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changeset
|
726 |
|
4505
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|
727 ParsedDicomFile dicom(instance, GetDefaultDicomEncoding(), false /* be strict */); |
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|
728 |
|
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|
729 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
|
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|
730 |
|
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|
731 std::map<MetadataType, std::string> instanceMetadata; |
|
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|
732 |
|
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|
733 { |
|
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|
734 DicomMap summary; |
|
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735 OrthancConfiguration::DefaultExtractDicomSummary(summary, toStore->GetParsedDicomFile()); |
|
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|
736 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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|
737 |
|
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738 DicomTransferSyntax transferSyntax; |
|
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739 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); |
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|
740 ASSERT_EQ(StoreStatus_Success, index.Store( |
|
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Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
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diff
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|
741 instanceMetadata, summary, attachments, toStore->GetMetadata(), |
|
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|
742 toStore->GetOrigin(), false /* don't overwrite */, |
| 4992 | 743 hasTransferSyntax, transferSyntax, true /* pixel data offset */, 42, false)); |
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744 } |
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745 |
| 4992 | 746 ASSERT_EQ(7u, instanceMetadata.size()); |
|
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|
747 ASSERT_TRUE(instanceMetadata.find(MetadataType_RemoteAet) != instanceMetadata.end()); |
| 1029 | 748 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_ReceptionDate) != instanceMetadata.end()); |
| 2190 | 749 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_TransferSyntax) != instanceMetadata.end()); |
|
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|
750 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_SopClassUid) != instanceMetadata.end()); |
|
4494
39192eb9b43d
New metadata automatically computed at the instance level: "PixelDataOffset"
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|
751 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_PixelDataOffset) != instanceMetadata.end()); |
| 4992 | 752 ASSERT_TRUE(instanceMetadata.find(MetadataType_MainDicomTagsSignature) != instanceMetadata.end()); |
| 2190 | 753 |
| 4499 | 754 ASSERT_EQ("42", instanceMetadata[MetadataType_Instance_PixelDataOffset]); |
| 755 | |
|
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|
756 // The default transfer syntax depends on the OS endianness |
|
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|
757 std::string s = instanceMetadata[MetadataType_Instance_TransferSyntax]; |
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758 ASSERT_TRUE(s == "1.2.840.10008.1.2.1" || |
|
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|
759 s == "1.2.840.10008.1.2.2"); |
|
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|
760 |
|
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761 ASSERT_EQ("1.2.840.10008.5.1.4.1.1.1", instanceMetadata[MetadataType_Instance_SopClassUid]); |
|
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|
762 |
|
713
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|
763 DicomInstanceHasher hasher(instance); |
|
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764 ids.push_back(hasher.HashPatient()); |
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|
765 ids.push_back(hasher.HashStudy()); |
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|
766 ids.push_back(hasher.HashSeries()); |
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767 ids.push_back(hasher.HashInstance()); |
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|
768 } |
|
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|
769 |
|
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|
770 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
|
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771 countStudies, countSeries, countInstances); |
|
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|
772 ASSERT_EQ(10u, countPatients); |
|
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|
773 ASSERT_EQ(0u, diskSize); |
|
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|
774 |
|
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changeset
|
775 for (size_t i = 0; i < ids.size(); i++) |
|
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|
776 { |
|
2512
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SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
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|
777 FileInfo info(Toolbox::GenerateUuid(), FileContentType_Dicom, 1, "md5"); |
|
4627
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|
778 int64_t revision = -1; |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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changeset
|
779 index.AddAttachment(revision, info, ids[i], false /* no previous revision */, -1, ""); |
|
4627
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|
780 ASSERT_EQ(0, revision); |
|
713
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changeset
|
781 |
|
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|
782 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
|
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|
783 countStudies, countSeries, countInstances); |
|
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|
784 ASSERT_GE(10u, diskSize); |
|
713
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diff
changeset
|
785 } |
|
707
203157cb4fde
unit tests of httpclient
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706
diff
changeset
|
786 |
|
203157cb4fde
unit tests of httpclient
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diff
changeset
|
787 // Because the DB is in memory, the SQLite index must not have been created |
| 2140 | 788 ASSERT_FALSE(SystemToolbox::IsRegularFile(path + "/index")); |
|
1453
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code to warn about possible threading problems
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diff
changeset
|
789 |
|
c0bdc47165ef
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diff
changeset
|
790 context.Stop(); |
|
1672
4c5a85c3ff43
sample database plugin now working
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diff
changeset
|
791 db.Close(); |
| 705 | 792 } |
| 1764 | 793 |
| 794 | |
|
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
3019
diff
changeset
|
795 TEST(ServerIndex, NormalizeIdentifier) |
| 1764 | 796 { |
| 2121 | 797 ASSERT_EQ("H^L.LO", ServerToolbox::NormalizeIdentifier(" Hé^l.LO %_ ")); |
| 798 ASSERT_EQ("1.2.840.113619.2.176.2025", ServerToolbox::NormalizeIdentifier(" 1.2.840.113619.2.176.2025 ")); | |
| 1764 | 799 } |
|
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|
800 |
|
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changeset
|
801 |
|
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changeset
|
802 TEST(ServerIndex, Overwrite) |
|
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|
803 { |
|
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changeset
|
804 // Create a dummy 1x1 image |
|
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changeset
|
805 Image image(PixelFormat_Grayscale8, 1, 1, false); |
|
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changeset
|
806 reinterpret_cast<uint8_t*>(image.GetBuffer()) [0] = 128; |
|
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removal of "dicom-as-json" attachments
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diff
changeset
|
807 |
|
2826
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changeset
|
808 for (unsigned int i = 0; i < 2; i++) |
|
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changeset
|
809 { |
|
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changeset
|
810 bool overwrite = (i == 0); |
|
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changeset
|
811 |
|
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diff
changeset
|
812 MemoryStorageArea storage; |
|
3017
517fc4767ae0
renamed class DatabaseWrapper as SQLiteDatabaseWrapper
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3001
diff
changeset
|
813 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
|
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changeset
|
814 db.Open(); |
|
2950
dc18d5804746
support of JobsHistorySize set to zero
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diff
changeset
|
815 ServerContext context(db, storage, true /* running unit tests */, 10); |
|
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|
816 context.SetupJobsEngine(true, false); |
|
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|
817 context.SetCompressionEnabled(true); |
|
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|
818 |
|
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changeset
|
819 DicomMap instance; |
|
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|
820 instance.SetValue(DICOM_TAG_PATIENT_ID, "patient", false); |
|
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|
821 instance.SetValue(DICOM_TAG_PATIENT_NAME, "name", false); |
|
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|
822 instance.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, "study", false); |
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|
823 instance.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, "series", false); |
|
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|
824 instance.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "sop", false); |
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|
825 instance.SetValue(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.1", false); // CR image |
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|
826 |
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|
827 DicomInstanceHasher hasher(instance); |
|
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|
828 std::string id = hasher.HashInstance(); |
|
3813
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moving SetOverwriteInstances from ServerIndex to ServerContext
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changeset
|
829 context.SetOverwriteInstances(overwrite); |
|
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changeset
|
830 |
|
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changeset
|
831 uint64_t diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances; |
|
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changeset
|
832 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
|
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|
833 countStudies, countSeries, countInstances); |
|
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|
834 |
|
3179
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changeset
|
835 ASSERT_EQ(0u, countInstances); |
|
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|
836 ASSERT_EQ(0u, diskSize); |
|
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|
837 |
|
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|
838 { |
|
4505
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diff
changeset
|
839 ParsedDicomFile dicom(instance, GetDefaultDicomEncoding(), false /* be strict */); |
|
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changeset
|
840 |
|
4514
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|
841 // Add a pixel data so as to have one "FileContentType_DicomUntilPixelData" |
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842 // (because of "context.SetCompressionEnabled(true)") |
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843 dicom.EmbedImage(image); |
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844 |
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845 DicomInstanceHasher hasher(instance); |
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846 |
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847 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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848 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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849 ASSERT_EQ(id, hasher.HashInstance()); |
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850 |
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851 std::string id2; |
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852 ServerContext::StoreResult result = context.Store(id2, *toStore, StoreInstanceMode_Default); |
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853 ASSERT_EQ(StoreStatus_Success, result.GetStatus()); |
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854 ASSERT_EQ(id, id2); |
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855 } |
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856 |
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857 { |
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858 FileInfo nope; |
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859 int64_t revision; |
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860 ASSERT_FALSE(context.GetIndex().LookupAttachment(nope, revision, id, FileContentType_DicomAsJson)); |
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861 } |
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862 |
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863 FileInfo dicom1, pixelData1; |
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864 int64_t revision; |
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865 ASSERT_TRUE(context.GetIndex().LookupAttachment(dicom1, revision, id, FileContentType_Dicom)); |
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866 ASSERT_EQ(0, revision); |
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867 revision = -1; |
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868 ASSERT_TRUE(context.GetIndex().LookupAttachment(pixelData1, revision, id, FileContentType_DicomUntilPixelData)); |
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869 ASSERT_EQ(0, revision); |
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870 |
|
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871 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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872 countStudies, countSeries, countInstances); |
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873 ASSERT_EQ(1u, countInstances); |
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874 ASSERT_EQ(dicom1.GetCompressedSize() + pixelData1.GetCompressedSize(), diskSize); |
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875 ASSERT_EQ(dicom1.GetUncompressedSize() + pixelData1.GetUncompressedSize(), uncompressedSize); |
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876 |
|
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877 Json::Value tmp; |
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878 context.ReadDicomAsJson(tmp, id); |
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879 ASSERT_EQ("name", tmp["0010,0010"]["Value"].asString()); |
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880 |
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881 { |
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882 ServerContext::DicomCacheLocker locker(context, id); |
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883 std::string tmp; |
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884 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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885 ASSERT_EQ("name", tmp); |
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886 } |
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887 |
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888 { |
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889 DicomMap instance2; |
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890 instance2.Assign(instance); |
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891 instance2.SetValue(DICOM_TAG_PATIENT_NAME, "overwritten", false); |
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|
892 |
|
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893 ParsedDicomFile dicom(instance2, GetDefaultDicomEncoding(), false /* be strict */); |
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894 |
|
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895 // Add a pixel data so as to have one "FileContentType_DicomUntilPixelData" |
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896 dicom.EmbedImage(image); |
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|
897 |
|
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898 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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|
899 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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|
900 |
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901 std::string id2; |
|
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902 ServerContext::StoreResult result = context.Store(id2, *toStore, StoreInstanceMode_Default); |
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903 ASSERT_EQ(overwrite ? StoreStatus_Success : StoreStatus_AlreadyStored, result.GetStatus()); |
|
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904 ASSERT_EQ(id, id2); |
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905 } |
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|
906 |
|
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907 { |
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908 FileInfo nope; |
|
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909 int64_t revision; |
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910 ASSERT_FALSE(context.GetIndex().LookupAttachment(nope, revision, id, FileContentType_DicomAsJson)); |
|
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911 } |
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|
912 |
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|
913 FileInfo dicom2, pixelData2; |
|
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914 ASSERT_TRUE(context.GetIndex().LookupAttachment(dicom2, revision, id, FileContentType_Dicom)); |
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915 ASSERT_EQ(0, revision); |
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|
916 revision = -1; |
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917 ASSERT_TRUE(context.GetIndex().LookupAttachment(pixelData2, revision, id, FileContentType_DicomUntilPixelData)); |
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|
918 ASSERT_EQ(0, revision); |
|
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|
919 |
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920 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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|
921 countStudies, countSeries, countInstances); |
|
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922 ASSERT_EQ(1u, countInstances); |
|
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923 ASSERT_EQ(dicom2.GetCompressedSize() + pixelData2.GetCompressedSize(), diskSize); |
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924 ASSERT_EQ(dicom2.GetUncompressedSize() + pixelData2.GetUncompressedSize(), uncompressedSize); |
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|
925 |
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|
926 if (overwrite) |
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927 { |
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928 ASSERT_NE(dicom1.GetUuid(), dicom2.GetUuid()); |
|
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929 ASSERT_NE(pixelData1.GetUuid(), pixelData2.GetUuid()); |
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930 ASSERT_NE(dicom1.GetUncompressedSize(), dicom2.GetUncompressedSize()); |
|
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|
931 ASSERT_NE(pixelData1.GetUncompressedSize(), pixelData2.GetUncompressedSize()); |
|
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|
932 |
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|
933 context.ReadDicomAsJson(tmp, id); |
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934 ASSERT_EQ("overwritten", tmp["0010,0010"]["Value"].asString()); |
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|
935 |
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|
936 { |
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937 ServerContext::DicomCacheLocker locker(context, id); |
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|
938 std::string tmp; |
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939 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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940 ASSERT_EQ("overwritten", tmp); |
|
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941 } |
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|
942 } |
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|
943 else |
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|
944 { |
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945 ASSERT_EQ(dicom1.GetUuid(), dicom2.GetUuid()); |
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946 ASSERT_EQ(pixelData1.GetUuid(), pixelData2.GetUuid()); |
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947 ASSERT_EQ(dicom1.GetUncompressedSize(), dicom2.GetUncompressedSize()); |
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948 ASSERT_EQ(pixelData1.GetUncompressedSize(), pixelData2.GetUncompressedSize()); |
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949 |
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950 context.ReadDicomAsJson(tmp, id); |
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951 ASSERT_EQ("name", tmp["0010,0010"]["Value"].asString()); |
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952 |
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953 { |
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954 ServerContext::DicomCacheLocker locker(context, id); |
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955 std::string tmp; |
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956 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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957 ASSERT_EQ("name", tmp); |
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958 } |
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959 } |
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960 |
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961 context.Stop(); |
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962 db.Close(); |
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963 } |
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964 } |
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965 |
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966 |
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967 TEST(ServerIndex, DicomUntilPixelData) |
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968 { |
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969 // Create a dummy 1x1 image |
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970 Image image(PixelFormat_Grayscale8, 1, 1, false); |
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971 reinterpret_cast<uint8_t*>(image.GetBuffer()) [0] = 128; |
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972 |
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973 for (unsigned int i = 0; i < 2; i++) |
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974 { |
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975 const bool compression = (i == 0); |
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976 |
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977 MemoryStorageArea storage; |
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978 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
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979 db.Open(); |
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980 ServerContext context(db, storage, true /* running unit tests */, 10); |
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981 context.SetupJobsEngine(true, false); |
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982 context.SetCompressionEnabled(compression); |
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983 |
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984 for (unsigned int j = 0; j < 2; j++) |
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985 { |
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986 const bool withPixelData = (j == 0); |
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987 |
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988 ParsedDicomFile dicom(true); |
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989 |
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990 if (withPixelData) |
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991 { |
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992 dicom.EmbedImage(image); |
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993 } |
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994 |
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995 std::string id; |
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996 size_t dicomSize; |
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997 |
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998 { |
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999 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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1000 dicomSize = toStore->GetBufferSize(); |
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1001 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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1002 ServerContext::StoreResult result = context.Store(id, *toStore, StoreInstanceMode_Default); |
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1003 ASSERT_EQ(StoreStatus_Success, result.GetStatus()); |
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1004 } |
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1005 |
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1006 std::set<FileContentType> attachments; |
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1007 context.GetIndex().ListAvailableAttachments(attachments, id, ResourceType_Instance); |
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1008 |
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1009 ASSERT_TRUE(attachments.find(FileContentType_Dicom) != attachments.end()); |
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1010 |
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1011 if (compression && |
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1012 withPixelData) |
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1013 { |
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1014 ASSERT_EQ(2u, attachments.size()); |
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1015 ASSERT_TRUE(attachments.find(FileContentType_DicomUntilPixelData) != attachments.end()); |
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1016 } |
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1017 else |
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1018 { |
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1019 ASSERT_EQ(1u, attachments.size()); |
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1020 } |
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1021 |
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1022 std::string s; |
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1023 int64_t revision; |
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1024 bool found = context.GetIndex().LookupMetadata(s, revision, id, ResourceType_Instance, |
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1025 MetadataType_Instance_PixelDataOffset); |
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1026 |
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1027 if (withPixelData) |
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1028 { |
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1029 ASSERT_TRUE(found); |
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1030 ASSERT_EQ(0, revision); |
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1031 ASSERT_GT(boost::lexical_cast<int>(s), 128 /* length of the DICOM preamble */); |
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1032 ASSERT_LT(boost::lexical_cast<size_t>(s), dicomSize); |
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1033 } |
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1034 else |
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1035 { |
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1036 ASSERT_FALSE(found); |
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1037 } |
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1038 } |
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1039 } |
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1040 } |