annotate OrthancServer/RadiotherapyRestApi.cpp @ 535:da8e064d0d49 dicom-rt

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 03 Sep 2013 17:19:02 +0200
parents b22312081388
children 505d6deb9947
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2013 Medical Physics Department, CHU of Liege,
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4 * Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "RadiotherapyRestApi.h"
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34
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35 #include "ServerToolbox.h"
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36
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37 #define RETRIEVE_CONTEXT(call) \
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38 OrthancRestApi& contextApi = \
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39 dynamic_cast<OrthancRestApi&>(call.GetContext()); \
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40 ServerContext& context = contextApi.GetContext()
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41
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42
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43 // DICOM tags for RT-STRUCT
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44
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45 #define REFERENCED_STUDY_SEQUENCE "0008,1110"
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46 #define REFERENCED_SOP_INSTANCE_UID "0008,1155"
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47 #define FRAME_OF_REFERENCE_UID "0020,0052"
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48 #define REFERENCED_FRAME_OF_REFERENCE_SEQUENCE "3006,0010"
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49 #define STRUCTURE_SET_ROI_SEQUENCE "3006,0020"
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50 #define ROI_NUMBER "3006,0022"
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51 #define ROI_NAME "3006,0026"
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52 #define ROI_GENERATION_ALGORITHM "3006,0036"
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53 #define ROI_CONTOUR_SEQUENCE "3006,0039"
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54 #define REFERENCED_ROI_NUMBER "3006,0084"
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55 #define ROI_DISPLAY_COLOR "3006,002a"
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56 #define CONTOUR_SEQUENCE "3006,0040"
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57 #define CONTOUR_IMAGE_SEQUENCE "3006,0016"
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58 #define CONTOUR_GEOMETRIC_TYPE "3006,0042"
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59 #define NUMBER_OF_CONTOUR_POINTS "3006,0046"
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60 #define CONTOUR_DATA "3006,0050"
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61 #define CONTOUR_SLAB_THICKNESS "3006,0044"
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62
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63
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64 namespace Orthanc
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65 {
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66 static bool CheckSeriesModality(Json::Value& study,
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67 Json::Value& series,
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68 Json::Value& content,
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69 ServerContext& context,
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70 const std::string& seriesId,
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71 const std::string& modality)
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72 {
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73 if (!context.GetIndex().LookupResource(series, seriesId, ResourceType_Series))
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74 {
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75 return false;
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76 }
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77
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78 // Retrieve the parent study
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79 std::string studyId = series["ParentStudy"].asString();
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80 if (!context.GetIndex().LookupResource(study, studyId, ResourceType_Study))
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81 {
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82 return false;
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83 }
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84
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85 // Check the modality and that there is a single instance inside the series
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86 if (!series["MainDicomTags"].isMember("Modality") ||
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87 series["MainDicomTags"]["Modality"].asString() != modality ||
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88 series["Instances"].size() != 1)
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89 {
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90 return false;
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91 }
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92
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93 // Retrieve the instance data
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94 std::string instanceId = series["Instances"][0].asString();
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95
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96 Json::Value info;
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97 context.ReadJson(content, instanceId);
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98
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99 return true;
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100 }
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101
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102
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103 static bool ContourToPoints(Json::Value& result,
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104 const Json::Value& source)
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105 {
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106 std::vector<std::string> points;
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107 Toolbox::Split(points, source.asString(), '\\');
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108
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109 if (points.size() % 3 != 0)
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110 {
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111 return false;
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112 }
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113
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114 result = Json::arrayValue;
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115
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116 for (size_t k = 0; k < points.size(); k += 3)
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117 {
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118 Json::Value p = Json::arrayValue;
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119
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120 try
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121 {
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122 p.append(boost::lexical_cast<float>(points[k]));
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123 p.append(boost::lexical_cast<float>(points[k + 1]));
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124 p.append(boost::lexical_cast<float>(points[k + 2]));
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125 }
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126 catch (boost::bad_lexical_cast)
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127 {
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128 return false;
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129 }
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130
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131 result.append(p);
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132 }
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133
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134 return true;
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135 }
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136
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137
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138 static bool GetRtStructuresInfo(Json::Value& study,
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139 Json::Value& series,
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140 Json::Value& content,
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141 std::string& frameOfReference,
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142 ServerContext& context,
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143 const std::string& seriesId)
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144 {
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145 if (!CheckSeriesModality(study, series, content, context, seriesId, "RTSTRUCT"))
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146 {
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147 return false;
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parents:
diff changeset
148 }
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149
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150 // Check that the "ReferencedStudySequence" is the same as the parent study.
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151 if (!content.isMember(REFERENCED_STUDY_SEQUENCE) ||
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152 content[REFERENCED_STUDY_SEQUENCE]["Value"].size() != 1 ||
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153 !content[REFERENCED_STUDY_SEQUENCE]["Value"][0].isMember(REFERENCED_SOP_INSTANCE_UID) ||
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154 content[REFERENCED_STUDY_SEQUENCE]["Value"][0][REFERENCED_SOP_INSTANCE_UID]["Value"].asString() !=
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diff changeset
155 study["MainDicomTags"]["StudyInstanceUID"].asString())
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parents:
diff changeset
156 {
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diff changeset
157 return false;
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parents:
diff changeset
158 }
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159
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diff changeset
160 // Lookup for the frame of reference. Orthanc does not support
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diff changeset
161 // RTSTRUCT with multiple frames of reference.
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diff changeset
162 if (!content.isMember(REFERENCED_FRAME_OF_REFERENCE_SEQUENCE) ||
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163 content[REFERENCED_FRAME_OF_REFERENCE_SEQUENCE]["Value"].size() != 1 ||
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diff changeset
164 !content[REFERENCED_FRAME_OF_REFERENCE_SEQUENCE]["Value"][0].isMember(FRAME_OF_REFERENCE_UID))
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165 {
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diff changeset
166 return false;
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parents:
diff changeset
167 }
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parents:
diff changeset
168
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169 frameOfReference = content[REFERENCED_FRAME_OF_REFERENCE_SEQUENCE]["Value"][0][FRAME_OF_REFERENCE_UID]["Value"].asString();
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170
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171 return true;
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172 }
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173
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174
535
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175 static bool GetRtStructuresRoi(Json::Value& result,
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176 Json::Value& contourSequence,
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177 std::string& instanceId,
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178 ServerContext& context,
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179 const std::string& seriesId,
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180 const std::string& roiNumber)
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181 {
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182 Json::Value study, series, content;
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183 std::string frameOfReference;
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diff changeset
184
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185 if (!GetRtStructuresInfo(study, series, content, frameOfReference, context, seriesId))
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diff changeset
186 {
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187 return false;
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188 }
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diff changeset
189
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diff changeset
190 if (!content.isMember(STRUCTURE_SET_ROI_SEQUENCE) ||
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parents: 532
diff changeset
191 !content.isMember(ROI_CONTOUR_SEQUENCE))
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diff changeset
192 {
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193 return false;
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diff changeset
194 }
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diff changeset
195
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diff changeset
196 instanceId = series["Instances"][0].asString();
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diff changeset
197
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diff changeset
198 bool found = false;
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diff changeset
199
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diff changeset
200 for (Json::Value::ArrayIndex i = 0; i < content[STRUCTURE_SET_ROI_SEQUENCE]["Value"].size(); i++)
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diff changeset
201 {
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diff changeset
202 const Json::Value& roi = content[STRUCTURE_SET_ROI_SEQUENCE]["Value"][i];
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diff changeset
203
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diff changeset
204 if (roi.isMember(ROI_NUMBER) &&
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diff changeset
205 roi.isMember(ROI_NAME) &&
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
206 roi[ROI_NUMBER]["Value"].asString() == roiNumber)
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diff changeset
207 {
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diff changeset
208 result["InternalIndex"] = i;
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
209 result["Number"] = boost::lexical_cast<unsigned int>(roiNumber);
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parents: 532
diff changeset
210 result["Name"] = roi[ROI_NAME]["Value"].asString();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
211 result["GenerationAlgorithm"] = roi[ROI_GENERATION_ALGORITHM]["Value"].asString();
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diff changeset
212 found = true;
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diff changeset
213 }
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diff changeset
214 }
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parents: 532
diff changeset
215
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diff changeset
216 if (!found)
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diff changeset
217 {
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diff changeset
218 return false;
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parents: 532
diff changeset
219 }
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parents: 532
diff changeset
220
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diff changeset
221 for (Json::Value::ArrayIndex i = 0; i < content[ROI_CONTOUR_SEQUENCE]["Value"].size(); i++)
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diff changeset
222 {
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diff changeset
223 const Json::Value& contour = content[ROI_CONTOUR_SEQUENCE]["Value"][i];
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parents: 532
diff changeset
224
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parents: 532
diff changeset
225 if (contour.isMember(REFERENCED_ROI_NUMBER) &&
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
226 contour.isMember(ROI_DISPLAY_COLOR) &&
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
227 contour.isMember(CONTOUR_SEQUENCE) &&
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
228 contour[REFERENCED_ROI_NUMBER]["Value"].asString() == roiNumber)
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parents: 532
diff changeset
229 {
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diff changeset
230 std::vector<std::string> color;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
231 Toolbox::Split(color, contour[ROI_DISPLAY_COLOR]["Value"].asString(), '\\');
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parents: 532
diff changeset
232
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diff changeset
233 result["DisplayColor"] = Json::arrayValue;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
234 if (color.size() != 3)
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parents: 532
diff changeset
235 {
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parents: 532
diff changeset
236 return false;
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parents: 532
diff changeset
237 }
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parents: 532
diff changeset
238
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parents: 532
diff changeset
239 for (size_t k = 0; k < color.size(); k++)
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parents: 532
diff changeset
240 {
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
241 try
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parents: 532
diff changeset
242 {
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
243 result["DisplayColor"].append(boost::lexical_cast<int>(color[k]));
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
244 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
245 catch (boost::bad_lexical_cast)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
246 {
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
247 return false;
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parents: 532
diff changeset
248 }
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parents: 532
diff changeset
249 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
250
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parents: 532
diff changeset
251 contourSequence = contour[CONTOUR_SEQUENCE]["Value"];
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parents: 532
diff changeset
252
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diff changeset
253 return true;
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parents: 532
diff changeset
254 }
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
255 }
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parents: 532
diff changeset
256
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parents: 532
diff changeset
257 return false;
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parents: 532
diff changeset
258 }
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parents: 532
diff changeset
259
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diff changeset
260
526
e318e9d49815 rt-struct
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parents:
diff changeset
261 static void GetRtStructuresInfo(RestApi::GetCall& call)
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parents:
diff changeset
262 {
e318e9d49815 rt-struct
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parents:
diff changeset
263 RETRIEVE_CONTEXT(call);
e318e9d49815 rt-struct
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parents:
diff changeset
264
e318e9d49815 rt-struct
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parents:
diff changeset
265 Json::Value study, series, content;
e318e9d49815 rt-struct
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parents:
diff changeset
266 std::string frameOfReference;
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 if (GetRtStructuresInfo(study, series, content, frameOfReference, context, call.GetUriComponent("id", "")))
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parents:
diff changeset
268 {
e318e9d49815 rt-struct
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parents:
diff changeset
269 Json::Value result;
e318e9d49815 rt-struct
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parents:
diff changeset
270
e318e9d49815 rt-struct
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parents:
diff changeset
271 result["Study"] = study["ID"];
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parents:
diff changeset
272
e318e9d49815 rt-struct
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parents:
diff changeset
273
e318e9d49815 rt-struct
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parents:
diff changeset
274 // Lookup the series with the same frame of reference inside this study
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parents:
diff changeset
275 result["RelatedSeries"] = Json::arrayValue;
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parents:
diff changeset
276
e318e9d49815 rt-struct
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parents:
diff changeset
277 for (Json::Value::ArrayIndex i = 0; i < study["Series"].size(); i++)
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 {
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parents:
diff changeset
279 Json::Value otherSeries;
e318e9d49815 rt-struct
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parents:
diff changeset
280 if (context.GetIndex().LookupResource(otherSeries, study["Series"][i].asString(), ResourceType_Series) &&
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 otherSeries["Instances"].size() > 0)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282 {
e318e9d49815 rt-struct
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parents:
diff changeset
283 Json::Value info;
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 context.ReadJson(info, otherSeries["Instances"][0].asString());
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parents:
diff changeset
285
e318e9d49815 rt-struct
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parents:
diff changeset
286 if (info.isMember(FRAME_OF_REFERENCE_UID))
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 {
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288 result["RelatedSeries"].append(study["Series"][i].asString());
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289 }
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290 }
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291 }
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292
529
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293
526
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294 call.GetOutput().AnswerJson(result);
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295 }
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296 }
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297
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298
529
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299 static void GetRtStructuresListOfROIs(RestApi::GetCall& call)
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300 {
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301 RETRIEVE_CONTEXT(call);
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302
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303 Json::Value study, series, content;
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304 std::string frameOfReference;
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305 if (GetRtStructuresInfo(study, series, content, frameOfReference, context, call.GetUriComponent("id", "")))
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306 {
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307 Json::Value result(Json::arrayValue);
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308
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309 if (content.isMember(STRUCTURE_SET_ROI_SEQUENCE))
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310 {
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311 for (Json::Value::ArrayIndex i = 0; i < content[STRUCTURE_SET_ROI_SEQUENCE]["Value"].size(); i++)
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312 {
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313 if (content[STRUCTURE_SET_ROI_SEQUENCE]["Value"][i].isMember(ROI_NUMBER))
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314 {
535
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315 result.append(boost::lexical_cast<int>(content[STRUCTURE_SET_ROI_SEQUENCE]["Value"][i][ROI_NUMBER]["Value"].asString()));
529
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316 }
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317 }
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318 }
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319
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320 call.GetOutput().AnswerJson(result);
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321 }
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322 }
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323
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324
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325 static void GetRtStructuresROI(RestApi::GetCall& call)
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326 {
535
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327 RETRIEVE_CONTEXT(call);
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328
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329 Json::Value roi, contour;
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330 std::string instanceId;
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331
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332 if (GetRtStructuresRoi(roi, contour, instanceId, context,
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333 call.GetUriComponent("id", ""),
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334 call.GetUriComponent("roi", "")))
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335 {
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336 roi.removeMember("InternalIndex");
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337 call.GetOutput().AnswerJson(roi);
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338 }
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339 }
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340
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341
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342 static void GetRtStructuresROIPoints(RestApi::GetCall& call)
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343 {
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344 RETRIEVE_CONTEXT(call);
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345
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346 Json::Value roi, contour;
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347 std::string instanceId;
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348
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349 if (GetRtStructuresRoi(roi, contour, instanceId, context,
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350 call.GetUriComponent("id", ""),
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351 call.GetUriComponent("roi", "")))
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352 {
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353 Json::Value result = Json::arrayValue;
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354
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355 for (Json::Value::ArrayIndex i = 0; i < contour.size(); i++)
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356 {
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357 if (contour[i][CONTOUR_GEOMETRIC_TYPE]["Value"].asString() == "POINT")
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358 {
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359 Json::Value p;
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diff changeset
360 if (ContourToPoints(p, contour[i][CONTOUR_DATA]["Value"].asString()) &&
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diff changeset
361 p.size() == 1)
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362 {
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diff changeset
363 result.append(p[0]);
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364 }
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parents: 532
diff changeset
365 }
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diff changeset
366 }
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367
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diff changeset
368 call.GetOutput().AnswerJson(result);
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diff changeset
369 }
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diff changeset
370 }
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diff changeset
371
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diff changeset
372
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diff changeset
373 static void GetRtStructuresListOfClosedPlanars(RestApi::GetCall& call)
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diff changeset
374 {
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diff changeset
375 RETRIEVE_CONTEXT(call);
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diff changeset
376
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diff changeset
377 Json::Value roi, contour;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
378 std::string instanceId;
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parents: 532
diff changeset
379
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parents: 532
diff changeset
380 if (GetRtStructuresRoi(roi, contour, instanceId, context,
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parents: 532
diff changeset
381 call.GetUriComponent("id", ""),
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parents: 532
diff changeset
382 call.GetUriComponent("roi", "")))
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
383 {
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diff changeset
384 Json::Value result = Json::arrayValue;
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parents: 532
diff changeset
385
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diff changeset
386 for (Json::Value::ArrayIndex i = 0; i < contour.size(); i++)
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parents: 532
diff changeset
387 {
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parents: 532
diff changeset
388 if (contour[i].isMember(CONTOUR_IMAGE_SEQUENCE) &&
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
389 contour[i].isMember(CONTOUR_GEOMETRIC_TYPE) &&
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parents: 532
diff changeset
390 contour[i].isMember(NUMBER_OF_CONTOUR_POINTS) &&
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parents: 532
diff changeset
391 contour[i].isMember(CONTOUR_DATA) &&
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
392 contour[i].isMember(CONTOUR_SLAB_THICKNESS) &&
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
393 contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"].size() == 1 &&
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
394 contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"][0].isMember(REFERENCED_SOP_INSTANCE_UID) &&
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
395 contour[i][CONTOUR_GEOMETRIC_TYPE]["Value"].asString() == "CLOSED_PLANAR")
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parents: 532
diff changeset
396 {
da8e064d0d49 rth api refactored
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diff changeset
397 result.append(i);
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parents: 532
diff changeset
398 }
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
399 }
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parents: 532
diff changeset
400
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diff changeset
401 call.GetOutput().AnswerJson(result);
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parents: 532
diff changeset
402 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
403 }
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
404
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
405
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
406 static void GetRtStructuresSingleClosedPlanar(RestApi::GetCall& call)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
407 {
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
408 RETRIEVE_CONTEXT(call);
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
409
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
410 Json::Value roi, contour;
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
411 std::string instanceId;
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
412
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
413 if (GetRtStructuresRoi(roi, contour, instanceId, context,
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
414 call.GetUriComponent("id", ""),
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
415 call.GetUriComponent("roi", "")))
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
416 {
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
417 unsigned int index = boost::lexical_cast<unsigned int>(call.GetUriComponent("polygon", ""));
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
418
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
419 boost::mutex::scoped_lock lock(context.GetDicomFileMutex());
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
420 ParsedDicomFile& dicom = context.GetDicomFile(instanceId);
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
421
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
422 ParsedDicomFile::SequencePath path;
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
423 path.push_back(std::make_pair(DicomTag(0x3006, 0x0039 /* ROIContourSequence */), roi["InternalIndex"].asInt()));
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
424 path.push_back(std::make_pair(DicomTag(0x3006, 0x0040 /* ContourSequence */), index));
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
425
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
426 Json::Value result;
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
427 std::string contourData;
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
428 std::string numberOfPoints;
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parents: 532
diff changeset
429
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
430 if (dicom.GetTagValue(contourData, path, DicomTag(0x3006, 0x0050 /* ContourData */)) &&
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parents: 532
diff changeset
431 dicom.GetTagValue(numberOfPoints, path, DicomTag(0x3006, 0x0046 /* NumberOfContourPoints */)) &&
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diff changeset
432 ContourToPoints(result, contourData) &&
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parents: 532
diff changeset
433 result.size() == boost::lexical_cast<unsigned int>(numberOfPoints))
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
434 {
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parents: 532
diff changeset
435 call.GetOutput().AnswerJson(result);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
436 }
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
437 }
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
438 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
439
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diff changeset
440
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diff changeset
441 static void GetRtStructuresClosedPlanarThickness(RestApi::GetCall& call)
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diff changeset
442 {
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
443 RETRIEVE_CONTEXT(call);
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parents: 532
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444
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parents: 532
diff changeset
445 Json::Value roi, contour;
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parents: 532
diff changeset
446 std::string instanceId;
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parents: 532
diff changeset
447
da8e064d0d49 rth api refactored
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diff changeset
448 if (GetRtStructuresRoi(roi, contour, instanceId, context,
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parents: 532
diff changeset
449 call.GetUriComponent("id", ""),
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Sebastien Jodogne <s.jodogne@gmail.com>
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450 call.GetUriComponent("roi", "")))
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parents: 532
diff changeset
451 {
da8e064d0d49 rth api refactored
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diff changeset
452 unsigned int index = boost::lexical_cast<unsigned int>(call.GetUriComponent("polygon", ""));
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parents: 532
diff changeset
453
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diff changeset
454 if (contour[index].isMember(CONTOUR_SLAB_THICKNESS))
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
455 {
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diff changeset
456 std::cout <<contour[index][CONTOUR_SLAB_THICKNESS] << std::endl;
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parents: 532
diff changeset
457 call.GetOutput().AnswerBuffer(contour[index][CONTOUR_SLAB_THICKNESS]["Value"].asString(), "text/plain");
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parents: 532
diff changeset
458 }
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diff changeset
459 else
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diff changeset
460 {
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diff changeset
461 // TODO - No slab thickness is explicitely specified: Should we
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462 // fallback to the thickness of the instance?
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parents: 532
diff changeset
463 }
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parents: 532
diff changeset
464 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
465 }
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diff changeset
466
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diff changeset
467
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diff changeset
468 static void GetRtStructuresClosedPlanarInstance(RestApi::GetCall& call)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
469 {
529
bd2087bb6450 access to rois
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diff changeset
470 RETRIEVE_CONTEXT(call);
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parents: 526
diff changeset
471
535
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diff changeset
472 Json::Value roi, contour;
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parents: 532
diff changeset
473 std::string instanceId;
532
b22312081388 extract roi geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 529
diff changeset
474
535
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
475 if (GetRtStructuresRoi(roi, contour, instanceId, context,
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parents: 532
diff changeset
476 call.GetUriComponent("id", ""),
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
477 call.GetUriComponent("roi", "")))
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
478 {
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
479 unsigned int index = boost::lexical_cast<unsigned int>(call.GetUriComponent("polygon", ""));
532
b22312081388 extract roi geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 529
diff changeset
480
535
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
481 if (contour[index].isMember(CONTOUR_IMAGE_SEQUENCE) &&
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
482 contour[index][CONTOUR_IMAGE_SEQUENCE]["Value"].size() == 1 &&
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parents: 532
diff changeset
483 contour[index][CONTOUR_IMAGE_SEQUENCE]["Value"][0].isMember(REFERENCED_SOP_INSTANCE_UID))
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parents: 532
diff changeset
484 {
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
485 std::string uid = contour[index][CONTOUR_IMAGE_SEQUENCE]["Value"][0][REFERENCED_SOP_INSTANCE_UID]["Value"].asString();
532
b22312081388 extract roi geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 529
diff changeset
486
535
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
487 std::list<std::string> instance;
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
488 context.GetIndex().LookupTagValue(instance, DICOM_TAG_SOP_INSTANCE_UID, uid);
532
b22312081388 extract roi geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 529
diff changeset
489
535
da8e064d0d49 rth api refactored
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parents: 532
diff changeset
490 Json::Value result;
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
491 if (instance.size() == 1 &&
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
492 context.GetIndex().LookupResource(result, instance.front(), ResourceType_Instance))
529
bd2087bb6450 access to rois
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 526
diff changeset
493 {
bd2087bb6450 access to rois
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 526
diff changeset
494 call.GetOutput().AnswerJson(result);
bd2087bb6450 access to rois
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 526
diff changeset
495 }
bd2087bb6450 access to rois
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 526
diff changeset
496 }
bd2087bb6450 access to rois
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 526
diff changeset
497 }
bd2087bb6450 access to rois
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 526
diff changeset
498 }
bd2087bb6450 access to rois
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 526
diff changeset
499
bd2087bb6450 access to rois
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 526
diff changeset
500
526
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 RadiotherapyRestApi::RadiotherapyRestApi(ServerContext& context) : OrthancRestApi(context)
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 {
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503 Register("/series/{id}/rt-structures", GetRtStructuresInfo);
529
bd2087bb6450 access to rois
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parents: 526
diff changeset
504 Register("/series/{id}/rt-structures/roi", GetRtStructuresListOfROIs);
535
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
505 Register("/series/{id}/rt-structures/roi/{roi}/info", GetRtStructuresROI);
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
506 Register("/series/{id}/rt-structures/roi/{roi}/points", GetRtStructuresROIPoints);
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
507 Register("/series/{id}/rt-structures/roi/{roi}/closed-planar", GetRtStructuresListOfClosedPlanars);
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
508 Register("/series/{id}/rt-structures/roi/{roi}/closed-planar/{polygon}/points", GetRtStructuresSingleClosedPlanar);
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
509 Register("/series/{id}/rt-structures/roi/{roi}/closed-planar/{polygon}/thickness", GetRtStructuresClosedPlanarThickness);
da8e064d0d49 rth api refactored
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 532
diff changeset
510 Register("/series/{id}/rt-structures/roi/{roi}/closed-planar/{polygon}/instance", GetRtStructuresClosedPlanarInstance);
526
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511 }
529
bd2087bb6450 access to rois
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 526
diff changeset
512
526
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513 }
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
514
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
516 // curl http://localhost:8042/series/0b9e2bb2-605a59aa-f27c0260-9cc4faf6-9d8bf457/rt-structures
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
517 // curl http://localhost:8042/series/ef041e6b-c855e775-f7e0f7fe-dc3c17dc-533cb8c5/rt-structures