Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancRestApi/OrthancRestResources.cpp @ 4414:d928dfcacb4b
cont openapi
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
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| date | Mon, 28 Dec 2020 14:46:51 +0100 |
| parents | 22a1352a0823 |
| children | b50410d0e98c |
| rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "OrthancRestApi.h" |
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36 |
| 4045 | 37 #include "../../../OrthancFramework/Sources/Compression/GzipCompressor.h" |
| 38 #include "../../../OrthancFramework/Sources/DicomFormat/DicomImageInformation.h" | |
| 39 #include "../../../OrthancFramework/Sources/DicomParsing/DicomWebJsonVisitor.h" | |
| 40 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
| 41 #include "../../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" | |
| 42 #include "../../../OrthancFramework/Sources/HttpServer/HttpContentNegociation.h" | |
| 43 #include "../../../OrthancFramework/Sources/Images/Image.h" | |
| 44 #include "../../../OrthancFramework/Sources/Images/ImageProcessing.h" | |
| 45 #include "../../../OrthancFramework/Sources/Logging.h" | |
| 46 #include "../../../OrthancFramework/Sources/MultiThreading/Semaphore.h" | |
| 47 | |
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48 #include "../OrthancConfiguration.h" |
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49 #include "../Search/DatabaseLookup.h" |
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50 #include "../ServerContext.h" |
| 2131 | 51 #include "../ServerToolbox.h" |
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52 #include "../SliceOrdering.h" |
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53 |
| 3085 | 54 #include "../../Plugins/Engine/OrthancPlugins.h" |
| 55 | |
| 3687 | 56 // This "include" is mandatory for Release builds using Linux Standard Base |
| 57 #include <boost/math/special_functions/round.hpp> | |
| 58 | |
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59 |
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60 /** |
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61 * This semaphore is used to limit the number of concurrent HTTP |
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62 * requests on CPU-intensive routes of the REST API, in order to |
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63 * prevent exhaustion of resources (new in Orthanc 1.7.0). |
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64 **/ |
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65 static Orthanc::Semaphore throttlingSemaphore_(4); // TODO => PARAMETER? |
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66 |
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67 |
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68 namespace Orthanc |
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69 { |
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70 static void AnswerDicomAsJson(RestApiCall& call, |
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71 const Json::Value& dicom, |
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72 DicomToJsonFormat mode) |
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73 { |
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74 if (mode != DicomToJsonFormat_Full) |
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75 { |
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76 Json::Value simplified; |
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77 Toolbox::SimplifyDicomAsJson(simplified, dicom, mode); |
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78 call.GetOutput().AnswerJson(simplified); |
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79 } |
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80 else |
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81 { |
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82 call.GetOutput().AnswerJson(dicom); |
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83 } |
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84 } |
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85 |
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86 |
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87 static DicomToJsonFormat GetDicomFormat(const RestApiGetCall& call) |
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88 { |
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89 if (call.HasArgument("simplify")) |
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90 { |
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91 return DicomToJsonFormat_Human; |
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92 } |
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93 else if (call.HasArgument("short")) |
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94 { |
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95 return DicomToJsonFormat_Short; |
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96 } |
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97 else |
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98 { |
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99 return DicomToJsonFormat_Full; |
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100 } |
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101 } |
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102 |
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103 |
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104 static void AnswerDicomAsJson(RestApiGetCall& call, |
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105 const Json::Value& dicom) |
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106 { |
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107 AnswerDicomAsJson(call, dicom, GetDicomFormat(call)); |
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108 } |
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109 |
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110 |
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111 static void ParseSetOfTags(std::set<DicomTag>& target, |
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112 const RestApiGetCall& call, |
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113 const std::string& argument) |
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114 { |
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115 target.clear(); |
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116 |
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117 if (call.HasArgument(argument)) |
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118 { |
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119 std::vector<std::string> tags; |
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120 Toolbox::TokenizeString(tags, call.GetArgument(argument, ""), ','); |
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121 |
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122 for (size_t i = 0; i < tags.size(); i++) |
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123 { |
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124 target.insert(FromDcmtkBridge::ParseTag(tags[i])); |
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125 } |
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126 } |
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127 } |
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128 |
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129 |
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130 // List all the patients, studies, series or instances ---------------------- |
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131 |
| 1354 | 132 static void AnswerListOfResources(RestApiOutput& output, |
| 133 ServerIndex& index, | |
| 134 const std::list<std::string>& resources, | |
| 135 ResourceType level, | |
| 136 bool expand) | |
| 137 { | |
| 138 Json::Value answer = Json::arrayValue; | |
| 139 | |
| 140 for (std::list<std::string>::const_iterator | |
| 1384 | 141 resource = resources.begin(); resource != resources.end(); ++resource) |
| 1354 | 142 { |
| 143 if (expand) | |
| 144 { | |
| 145 Json::Value item; | |
| 146 if (index.LookupResource(item, *resource, level)) | |
| 147 { | |
| 148 answer.append(item); | |
| 149 } | |
| 150 } | |
| 151 else | |
| 152 { | |
| 153 answer.append(*resource); | |
| 154 } | |
| 155 } | |
| 156 | |
| 157 output.AnswerJson(answer); | |
| 158 } | |
| 159 | |
| 160 | |
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161 template <enum ResourceType resourceType> |
| 974 | 162 static void ListResources(RestApiGetCall& call) |
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163 { |
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164 if (call.IsDocumentation()) |
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165 { |
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166 const std::string resources = GetResourceTypeText(resourceType, true /* plural */, false /* lower case */); |
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167 call.GetDocumentation() |
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168 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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169 .SetSummary("List the available " + resources) |
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170 .SetDescription("List the Orthanc identifiers of all the available DICOM " + resources) |
| 4403 | 171 .SetHttpGetArgument("limit", RestApiCallDocumentation::Type_Number, "Limit the number of results", false) |
| 172 .SetHttpGetArgument("since", RestApiCallDocumentation::Type_Number, "Show only the resources since the provided index", false) | |
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173 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, |
| 4403 | 174 "If present, retrieve detailed information about the individual " + resources, false) |
| 4404 | 175 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " |
| 176 "about the reported " + resources + " (if `expand` argument is provided)") | |
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177 .SetHttpGetSample("https://demo.orthanc-server.com/" + resources + "?since=0&limit=2", true); |
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178 return; |
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179 } |
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180 |
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181 ServerIndex& index = OrthancRestApi::GetIndex(call); |
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182 |
| 1354 | 183 std::list<std::string> result; |
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184 |
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185 if (call.HasArgument("limit") || |
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186 call.HasArgument("since")) |
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187 { |
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188 if (!call.HasArgument("limit")) |
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189 { |
| 2955 | 190 throw OrthancException(ErrorCode_BadRequest, |
| 191 "Missing \"limit\" argument for GET request against: " + | |
| 192 call.FlattenUri()); | |
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193 } |
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194 |
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195 if (!call.HasArgument("since")) |
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196 { |
| 2955 | 197 throw OrthancException(ErrorCode_BadRequest, |
| 198 "Missing \"since\" argument for GET request against: " + | |
| 199 call.FlattenUri()); | |
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200 } |
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201 |
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202 size_t since = boost::lexical_cast<size_t>(call.GetArgument("since", "")); |
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203 size_t limit = boost::lexical_cast<size_t>(call.GetArgument("limit", "")); |
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204 index.GetAllUuids(result, resourceType, since, limit); |
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205 } |
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206 else |
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207 { |
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208 index.GetAllUuids(result, resourceType); |
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209 } |
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210 |
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211 |
| 1354 | 212 AnswerListOfResources(call.GetOutput(), index, result, resourceType, call.HasArgument("expand")); |
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213 } |
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214 |
| 4409 | 215 |
| 216 | |
| 217 static std::string GetDocumentationSampleResource(ResourceType type) | |
| 218 { | |
| 219 switch (type) | |
| 220 { | |
| 221 case Orthanc::ResourceType_Instance: | |
| 222 return "https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2"; | |
| 223 break; | |
| 224 | |
| 225 case Orthanc::ResourceType_Series: | |
| 226 return "https://demo.orthanc-server.com/series/37836232-d13a2350-fa1dedc5-962b31aa-010f8e52"; | |
| 227 break; | |
| 228 | |
| 229 case Orthanc::ResourceType_Study: | |
| 230 return "https://demo.orthanc-server.com/studies/27f7126f-4f66fb14-03f4081b-f9341db2-53925988"; | |
| 231 break; | |
| 232 | |
| 233 case Orthanc::ResourceType_Patient: | |
| 234 return "https://demo.orthanc-server.com/patients/46e6332c-677825b6-202fcf7c-f787bc5f-7b07c382"; | |
| 235 break; | |
| 236 | |
| 237 default: | |
| 238 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 239 } | |
| 240 } | |
| 241 | |
| 242 | |
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243 template <enum ResourceType resourceType> |
| 974 | 244 static void GetSingleResource(RestApiGetCall& call) |
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245 { |
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246 if (call.IsDocumentation()) |
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247 { |
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248 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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249 call.GetDocumentation() |
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250 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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251 .SetSummary("Get information about some " + resource) |
| 4404 | 252 .SetDescription("Get detailed information about the DICOM " + resource + " of interest whose Orthanc identifier is provided in the URL") |
| 253 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") | |
| 4409 | 254 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) |
| 255 .SetHttpGetSample(GetDocumentationSampleResource(resourceType), true); | |
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256 return; |
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257 } |
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258 |
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259 Json::Value result; |
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260 if (OrthancRestApi::GetIndex(call).LookupResource(result, call.GetUriComponent("id", ""), resourceType)) |
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261 { |
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262 call.GetOutput().AnswerJson(result); |
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263 } |
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264 } |
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265 |
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266 template <enum ResourceType resourceType> |
| 974 | 267 static void DeleteSingleResource(RestApiDeleteCall& call) |
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268 { |
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269 if (call.IsDocumentation()) |
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270 { |
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271 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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272 call.GetDocumentation() |
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273 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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274 .SetSummary("Delete some " + resource) |
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275 .SetDescription("Delete the DICOM " + resource + " of interest whose Orthanc identifier is provided in the URL") |
| 4404 | 276 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); |
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277 return; |
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278 } |
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279 |
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280 Json::Value result; |
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281 if (OrthancRestApi::GetContext(call).DeleteResource(result, call.GetUriComponent("id", ""), resourceType)) |
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282 { |
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283 call.GetOutput().AnswerJson(result); |
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284 } |
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285 } |
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286 |
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287 |
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288 // Get information about a single patient ----------------------------------- |
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289 |
| 974 | 290 static void IsProtectedPatient(RestApiGetCall& call) |
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291 { |
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292 if (call.IsDocumentation()) |
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293 { |
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294 call.GetDocumentation() |
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295 .SetTag("Patients") |
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296 .SetSummary("Is the patient protected against recycling?") |
| 4404 | 297 .SetUriArgument("id", "Orthanc identifier of the patient of interest") |
| 4403 | 298 .AddAnswerType(MimeType_PlainText, "`1` if protected, `0` if not protected"); |
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299 return; |
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300 } |
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301 |
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302 std::string publicId = call.GetUriComponent("id", ""); |
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303 bool isProtected = OrthancRestApi::GetIndex(call).IsProtectedPatient(publicId); |
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304 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", MimeType_PlainText); |
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305 } |
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306 |
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307 |
| 974 | 308 static void SetPatientProtection(RestApiPutCall& call) |
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309 { |
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310 if (call.IsDocumentation()) |
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311 { |
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312 call.GetDocumentation() |
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313 .SetTag("Patients") |
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314 .SetSummary("Protect one patient against recycling") |
| 4403 | 315 .SetDescription("Check out configuration options `MaximumStorageSize` and `MaximumPatientCount`") |
| 4404 | 316 .SetUriArgument("id", "Orthanc identifier of the patient of interest"); |
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317 return; |
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318 } |
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319 |
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320 ServerContext& context = OrthancRestApi::GetContext(call); |
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321 |
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322 std::string publicId = call.GetUriComponent("id", ""); |
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323 |
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324 std::string body; |
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325 call.BodyToString(body); |
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326 body = Toolbox::StripSpaces(body); |
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327 |
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328 if (body == "0") |
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329 { |
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330 context.GetIndex().SetProtectedPatient(publicId, false); |
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331 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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332 } |
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333 else if (body == "1") |
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334 { |
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335 context.GetIndex().SetProtectedPatient(publicId, true); |
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336 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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337 } |
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338 else |
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339 { |
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340 // Bad request |
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341 } |
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342 } |
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343 |
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344 |
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345 // Get information about a single instance ---------------------------------- |
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346 |
| 974 | 347 static void GetInstanceFile(RestApiGetCall& call) |
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348 { |
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349 if (call.IsDocumentation()) |
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350 { |
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351 call.GetDocumentation() |
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352 .SetTag("Instances") |
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353 .SetSummary("Download DICOM") |
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354 .SetDescription("Download one DICOM instance") |
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355 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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356 .SetHttpHeader("Accept", "This HTTP header can be set to retrieve the DICOM instance in DICOMweb format") |
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357 .AddAnswerType(MimeType_Dicom, "The DICOM instance") |
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358 .AddAnswerType(MimeType_DicomWebJson, "The DICOM instance, in DICOMweb JSON format") |
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359 .AddAnswerType(MimeType_DicomWebXml, "The DICOM instance, in DICOMweb XML format"); |
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360 return; |
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361 } |
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362 |
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363 ServerContext& context = OrthancRestApi::GetContext(call); |
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364 |
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365 std::string publicId = call.GetUriComponent("id", ""); |
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366 |
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367 HttpToolbox::Arguments::const_iterator accept = call.GetHttpHeaders().find("accept"); |
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368 if (accept != call.GetHttpHeaders().end()) |
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369 { |
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370 // New in Orthanc 1.5.4 |
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371 try |
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372 { |
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373 MimeType mime = StringToMimeType(accept->second.c_str()); |
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374 |
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375 if (mime == MimeType_DicomWebJson || |
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376 mime == MimeType_DicomWebXml) |
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377 { |
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378 DicomWebJsonVisitor visitor; |
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379 |
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380 { |
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381 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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382 locker.GetDicom().Apply(visitor); |
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383 } |
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384 |
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385 if (mime == MimeType_DicomWebJson) |
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386 { |
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387 std::string s = visitor.GetResult().toStyledString(); |
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388 call.GetOutput().AnswerBuffer(s, MimeType_DicomWebJson); |
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389 } |
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390 else |
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391 { |
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392 std::string xml; |
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393 visitor.FormatXml(xml); |
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394 call.GetOutput().AnswerBuffer(xml, MimeType_DicomWebXml); |
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395 } |
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396 |
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397 return; |
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398 } |
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399 } |
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400 catch (OrthancException&) |
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401 { |
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402 } |
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403 } |
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404 |
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405 context.AnswerAttachment(call.GetOutput(), publicId, FileContentType_Dicom); |
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406 } |
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407 |
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408 |
| 974 | 409 static void ExportInstanceFile(RestApiPostCall& call) |
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410 { |
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411 ServerContext& context = OrthancRestApi::GetContext(call); |
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412 |
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413 std::string publicId = call.GetUriComponent("id", ""); |
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414 |
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415 std::string dicom; |
| 2124 | 416 context.ReadDicom(dicom, publicId); |
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417 |
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418 std::string target; |
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419 call.BodyToString(target); |
| 2140 | 420 SystemToolbox::WriteFile(dicom, target); |
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421 |
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422 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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423 } |
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424 |
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425 |
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426 template <DicomToJsonFormat format> |
| 974 | 427 static void GetInstanceTags(RestApiGetCall& call) |
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428 { |
| 4404 | 429 if (call.IsDocumentation()) |
| 430 { | |
| 431 if (format == DicomToJsonFormat_Human) | |
| 432 { | |
| 433 call.GetDocumentation() | |
| 434 .SetTag("Instances") | |
| 435 .SetSummary("Get human-readable tags") | |
| 436 .SetDescription("Get the DICOM tags in human-readable format") | |
| 437 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 438 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") | |
| 439 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/simplified-tags", true); | |
| 440 return; | |
| 441 } | |
| 442 else | |
| 443 { | |
| 444 throw OrthancException(ErrorCode_NotImplemented); | |
| 445 } | |
| 446 } | |
| 447 | |
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448 ServerContext& context = OrthancRestApi::GetContext(call); |
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449 |
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450 std::string publicId = call.GetUriComponent("id", ""); |
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451 |
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452 std::set<DicomTag> ignoreTagLength; |
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453 ParseSetOfTags(ignoreTagLength, call, "ignore-length"); |
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454 |
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455 if (format != DicomToJsonFormat_Full || |
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456 !ignoreTagLength.empty()) |
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457 { |
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458 Json::Value full; |
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459 context.ReadDicomAsJson(full, publicId, ignoreTagLength); |
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460 AnswerDicomAsJson(call, full, format); |
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461 } |
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462 else |
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463 { |
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464 // This path allows one to avoid the JSON decoding if no |
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465 // simplification is asked, and if no "ignore-length" argument |
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466 // is present |
| 2127 | 467 std::string full; |
| 468 context.ReadDicomAsJson(full, publicId); | |
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469 call.GetOutput().AnswerBuffer(full, MimeType_Json); |
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470 } |
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471 } |
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472 |
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473 |
| 974 | 474 static void GetInstanceTagsBis(RestApiGetCall& call) |
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475 { |
| 4404 | 476 if (call.IsDocumentation()) |
| 477 { | |
| 478 call.GetDocumentation() | |
| 479 .SetTag("Instances") | |
| 480 .SetSummary("Get DICOM tags") | |
| 481 .SetDescription("Get the DICOM tags in the specified format. By default, the `full` format is used, which " | |
| 482 "combines hexadecimal tags with human-readable description.") | |
| 483 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 484 .SetHttpGetArgument("simplify", RestApiCallDocumentation::Type_String, | |
| 485 "If present, report the DICOM tags in human-readable format " | |
| 486 "(same as the `/instances/{id}/simplified-tags` route)", false) | |
| 487 .SetHttpGetArgument("short", RestApiCallDocumentation::Type_String, | |
| 488 "If present, report the DICOM tags indexed in hexadecimal format", false) | |
| 489 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") | |
| 490 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/tags", true); | |
| 491 return; | |
| 492 } | |
| 493 | |
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494 switch (GetDicomFormat(call)) |
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495 { |
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496 case DicomToJsonFormat_Human: |
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497 GetInstanceTags<DicomToJsonFormat_Human>(call); |
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498 break; |
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499 |
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500 case DicomToJsonFormat_Short: |
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501 GetInstanceTags<DicomToJsonFormat_Short>(call); |
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502 break; |
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503 |
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504 case DicomToJsonFormat_Full: |
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505 GetInstanceTags<DicomToJsonFormat_Full>(call); |
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506 break; |
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507 |
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508 default: |
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509 throw OrthancException(ErrorCode_InternalError); |
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510 } |
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511 } |
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512 |
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513 |
| 974 | 514 static void ListFrames(RestApiGetCall& call) |
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515 { |
| 4414 | 516 if (call.IsDocumentation()) |
| 517 { | |
| 518 call.GetDocumentation() | |
| 519 .SetTag("Instances") | |
| 520 .SetSummary("List available frames") | |
| 521 .SetDescription("List the frames that are available in the DICOM instance of interest") | |
| 522 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 523 .AddAnswerType(MimeType_Json, "The list of the indices of the available frames") | |
| 524 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/frames", true); | |
| 525 return; | |
| 526 } | |
| 527 | |
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528 std::string publicId = call.GetUriComponent("id", ""); |
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529 |
|
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530 unsigned int numberOfFrames; |
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531 |
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532 { |
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533 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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534 numberOfFrames = locker.GetDicom().GetFramesCount(); |
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535 } |
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536 |
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537 Json::Value result = Json::arrayValue; |
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538 for (unsigned int i = 0; i < numberOfFrames; i++) |
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539 { |
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540 result.append(i); |
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541 } |
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542 |
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543 call.GetOutput().AnswerJson(result); |
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544 } |
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545 |
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546 |
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547 namespace |
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548 { |
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549 class ImageToEncode |
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550 { |
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551 private: |
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552 std::unique_ptr<ImageAccessor>& image_; |
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553 ImageExtractionMode mode_; |
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554 bool invert_; |
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555 MimeType format_; |
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556 std::string answer_; |
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557 |
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558 public: |
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559 ImageToEncode(std::unique_ptr<ImageAccessor>& image, |
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560 ImageExtractionMode mode, |
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561 bool invert) : |
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562 image_(image), |
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563 mode_(mode), |
| 4205 | 564 invert_(invert), |
| 565 format_(MimeType_Binary) | |
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566 { |
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567 } |
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568 |
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569 void Answer(RestApiOutput& output) |
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570 { |
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571 output.AnswerBuffer(answer_, format_); |
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572 } |
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573 |
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574 void EncodeUsingPng() |
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575 { |
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576 format_ = MimeType_Png; |
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577 DicomImageDecoder::ExtractPngImage(answer_, image_, mode_, invert_); |
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578 } |
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579 |
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580 void EncodeUsingPam() |
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581 { |
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582 format_ = MimeType_Pam; |
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583 DicomImageDecoder::ExtractPamImage(answer_, image_, mode_, invert_); |
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584 } |
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585 |
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586 void EncodeUsingJpeg(uint8_t quality) |
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587 { |
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588 format_ = MimeType_Jpeg; |
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589 DicomImageDecoder::ExtractJpegImage(answer_, image_, mode_, invert_, quality); |
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590 } |
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591 }; |
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592 |
|
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593 class EncodePng : public HttpContentNegociation::IHandler |
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594 { |
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595 private: |
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596 ImageToEncode& image_; |
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597 |
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598 public: |
| 4205 | 599 explicit EncodePng(ImageToEncode& image) : image_(image) |
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600 { |
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601 } |
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602 |
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603 virtual void Handle(const std::string& type, |
| 4205 | 604 const std::string& subtype) ORTHANC_OVERRIDE |
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605 { |
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606 assert(type == "image"); |
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607 assert(subtype == "png"); |
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608 image_.EncodeUsingPng(); |
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609 } |
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610 }; |
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611 |
|
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612 class EncodePam : public HttpContentNegociation::IHandler |
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613 { |
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614 private: |
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615 ImageToEncode& image_; |
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616 |
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617 public: |
| 4205 | 618 explicit EncodePam(ImageToEncode& image) : image_(image) |
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619 { |
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620 } |
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621 |
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622 virtual void Handle(const std::string& type, |
| 4205 | 623 const std::string& subtype) ORTHANC_OVERRIDE |
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624 { |
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625 assert(type == "image"); |
| 2780 | 626 assert(subtype == "x-portable-arbitrarymap"); |
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627 image_.EncodeUsingPam(); |
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628 } |
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629 }; |
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630 |
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631 class EncodeJpeg : public HttpContentNegociation::IHandler |
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632 { |
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633 private: |
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634 ImageToEncode& image_; |
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635 unsigned int quality_; |
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636 |
|
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637 public: |
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638 EncodeJpeg(ImageToEncode& image, |
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639 const RestApiGetCall& call) : |
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640 image_(image) |
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641 { |
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642 std::string v = call.GetArgument("quality", "90" /* default JPEG quality */); |
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643 bool ok = false; |
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644 |
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645 try |
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646 { |
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647 quality_ = boost::lexical_cast<unsigned int>(v); |
| 1847 | 648 ok = (quality_ >= 1 && quality_ <= 100); |
|
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649 } |
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650 catch (boost::bad_lexical_cast&) |
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651 { |
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652 } |
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653 |
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654 if (!ok) |
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655 { |
| 2955 | 656 throw OrthancException( |
| 657 ErrorCode_BadRequest, | |
| 658 "Bad quality for a JPEG encoding (must be a number between 0 and 100): " + v); | |
|
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659 } |
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660 } |
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661 |
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662 virtual void Handle(const std::string& type, |
| 4205 | 663 const std::string& subtype) ORTHANC_OVERRIDE |
|
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664 { |
|
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665 assert(type == "image"); |
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666 assert(subtype == "jpeg"); |
|
1902
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667 image_.EncodeUsingJpeg(quality_); |
|
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668 } |
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669 }; |
|
1781
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670 } |
|
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671 |
|
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672 |
|
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673 namespace |
|
3600
4066998150ef
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674 { |
|
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675 class IDecodedFrameHandler : public boost::noncopyable |
|
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676 { |
|
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677 public: |
|
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678 virtual ~IDecodedFrameHandler() |
|
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679 { |
|
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680 } |
|
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681 |
|
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682 virtual void Handle(RestApiGetCall& call, |
|
3712
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|
683 std::unique_ptr<ImageAccessor>& decoded, |
|
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684 const DicomMap& dicom) = 0; |
|
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685 |
|
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686 virtual bool RequiresDicomTags() const = 0; |
|
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687 |
|
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688 static void Apply(RestApiGetCall& call, |
|
4406
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689 IDecodedFrameHandler& handler, |
|
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690 ImageExtractionMode mode /* for generation of documentation */, |
|
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691 bool isRendered /* for generation of documentation */) |
|
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692 { |
|
4406
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693 if (call.IsDocumentation()) |
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694 { |
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695 std::string m; |
|
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696 if (!isRendered) |
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697 { |
|
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698 switch (mode) |
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699 { |
|
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700 case ImageExtractionMode_Preview: |
|
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701 m = "preview"; |
|
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702 break; |
|
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703 case ImageExtractionMode_UInt8: |
|
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704 m = "uint8"; |
|
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705 break; |
|
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|
706 case ImageExtractionMode_UInt16: |
|
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707 m = "uint16"; |
|
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708 break; |
|
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|
709 case ImageExtractionMode_Int16: |
|
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|
710 m = "int16"; |
|
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|
711 break; |
|
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712 default: |
|
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|
713 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
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|
714 } |
|
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|
715 } |
|
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|
716 |
|
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|
717 std::string description; |
|
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718 std::string verb = (isRendered ? "Render" : "Decode"); |
|
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|
719 |
|
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|
720 if (call.HasUriComponent("frame")) |
|
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|
721 { |
|
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|
722 description = verb + " one frame of interest from the given DICOM instance."; |
|
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|
723 call.GetDocumentation() |
|
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diff
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|
724 .SetSummary(verb + " a frame" + (m.empty() ? "" : " (" + m + ")")) |
|
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|
725 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
|
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|
726 } |
|
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|
727 else |
|
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|
728 { |
|
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|
729 description = verb + " the first frame of the given DICOM instance."; |
|
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changeset
|
730 call.GetDocumentation() |
|
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diff
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|
731 .SetSummary(verb + " an image" + (m.empty() ? "" : " (" + m + ")")); |
|
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|
732 } |
|
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diff
changeset
|
733 |
|
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diff
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|
734 if (isRendered) |
|
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|
735 { |
|
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|
736 description += (" This function takes scaling into account (`RescaleSlope` and `RescaleIntercept` tags), " |
|
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737 "as well as the default windowing stored in the DICOM file (`WindowCenter` and `WindowWidth`tags), " |
|
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changeset
|
738 "and can be used to resize the resulting image. Color images are not affected by windowing."); |
|
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changeset
|
739 call.GetDocumentation() |
|
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changeset
|
740 .SetHttpGetArgument("window-center",RestApiCallDocumentation::Type_Number, "Windowing center", false) |
|
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|
741 .SetHttpGetArgument("window-width",RestApiCallDocumentation::Type_Number, "Windowing width", false) |
|
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|
742 .SetHttpGetArgument("width",RestApiCallDocumentation::Type_Number, "Width of the resized image", false) |
|
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|
743 .SetHttpGetArgument("height",RestApiCallDocumentation::Type_Number, "Height of the resized image", false) |
|
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|
744 .SetHttpGetArgument("smooth",RestApiCallDocumentation::Type_Boolean, "Whether to smooth image on resize", false); |
|
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changeset
|
745 } |
|
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diff
changeset
|
746 else |
|
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|
747 { |
|
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diff
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|
748 switch (mode) |
|
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diff
changeset
|
749 { |
|
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diff
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|
750 case ImageExtractionMode_Preview: |
|
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|
751 description += " The full dynamic range of grayscale images is rescaled to the [0,255] range."; |
|
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diff
changeset
|
752 break; |
|
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changeset
|
753 case ImageExtractionMode_UInt8: |
|
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diff
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|
754 description += " Pixels of grayscale images are truncated to the [0,255] range."; |
|
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diff
changeset
|
755 break; |
|
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diff
changeset
|
756 case ImageExtractionMode_UInt16: |
|
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documenting generation of images
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changeset
|
757 description += " Pixels of grayscale images are truncated to the [0,65535] range."; |
|
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diff
changeset
|
758 break; |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
759 case ImageExtractionMode_Int16: |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
760 description += (" Pixels of grayscale images are truncated to the [-32768,32767] range. " |
|
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parents:
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diff
changeset
|
761 "Negative values must be interpreted according to two's complement."); |
|
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documenting generation of images
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parents:
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diff
changeset
|
762 break; |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
763 default: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
764 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
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documenting generation of images
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parents:
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diff
changeset
|
765 } |
|
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documenting generation of images
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parents:
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diff
changeset
|
766 } |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
767 |
|
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parents:
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diff
changeset
|
768 call.GetDocumentation() |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
769 .SetTag("Instances") |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
770 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
|
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documenting generation of images
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parents:
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diff
changeset
|
771 .SetHttpGetArgument("quality", RestApiCallDocumentation::Type_Number, "Quality for JPEG images (between 1 and 100, defaults to 90)", false) |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
772 .SetHttpHeader("Accept", "Format of the resulting image. Can be `image/png` (default), `image/jpeg` or `image/x-portable-arbitrarymap`") |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
773 .AddAnswerType(MimeType_Png, "PNG image") |
|
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documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
774 .AddAnswerType(MimeType_Jpeg, "JPEG image") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
775 .AddAnswerType(MimeType_Pam, "PAM image (Portable Arbitrary Map)") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
776 .SetDescription(description); |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
777 |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
778 return; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
779 } |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
780 |
|
3683
12253ddefe5a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
781 ServerContext& context = OrthancRestApi::GetContext(call); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
782 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
783 std::string frameId = call.GetUriComponent("frame", "0"); |
|
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parents:
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diff
changeset
|
784 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
785 unsigned int frame; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
786 try |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
787 { |
|
12253ddefe5a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
788 frame = boost::lexical_cast<unsigned int>(frameId); |
|
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skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
789 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
790 catch (boost::bad_lexical_cast&) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
791 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
792 return; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
793 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
794 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
795 DicomMap dicom; |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3690
diff
changeset
|
796 std::unique_ptr<ImageAccessor> decoded; |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
797 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
798 try |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
799 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
800 std::string publicId = call.GetUriComponent("id", ""); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
801 |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
802 decoded.reset(context.DecodeDicomFrame(publicId, frame)); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
803 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
804 if (decoded.get() == NULL) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
805 { |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
806 throw OrthancException(ErrorCode_NotImplemented, |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
807 "Cannot decode DICOM instance with ID: " + publicId); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
808 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
809 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
810 if (handler.RequiresDicomTags()) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
811 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
812 /** |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
813 * Retrieve a summary of the DICOM tags, which is |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
814 * necessary to deal with MONOCHROME1 photometric |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
815 * interpretation, and with windowing parameters. |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
816 **/ |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
817 ServerContext::DicomCacheLocker locker(context, publicId); |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
818 OrthancConfiguration::DefaultExtractDicomSummary(dicom, locker.GetDicom()); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
819 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
820 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
821 catch (OrthancException& e) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
822 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
823 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange || |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
824 e.GetErrorCode() == ErrorCode_UnknownResource) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
825 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
826 // The frame number is out of the range for this DICOM |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
827 // instance, the resource is not existent |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
828 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
829 else |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
830 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
831 std::string root = ""; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
832 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
833 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
834 root += "../"; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
835 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
836 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
837 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
838 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
839 return; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
840 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
841 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
842 handler.Handle(call, decoded, dicom); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
843 } |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
844 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
845 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
846 static void DefaultHandler(RestApiGetCall& call, |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3690
diff
changeset
|
847 std::unique_ptr<ImageAccessor>& decoded, |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
848 ImageExtractionMode mode, |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
849 bool invert) |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
850 { |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
851 ImageToEncode image(decoded, mode, invert); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
852 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
853 HttpContentNegociation negociation; |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
854 EncodePng png(image); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
855 negociation.Register(MIME_PNG, png); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
856 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
857 EncodeJpeg jpeg(image, call); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
858 negociation.Register(MIME_JPEG, jpeg); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
859 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
860 EncodePam pam(image); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
861 negociation.Register(MIME_PAM, pam); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
862 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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863 if (negociation.Apply(call.GetHttpHeaders())) |
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864 { |
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865 image.Answer(call.GetOutput()); |
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866 } |
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867 } |
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868 }; |
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869 |
|
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870 |
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871 class GetImageHandler : public IDecodedFrameHandler |
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872 { |
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873 private: |
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874 ImageExtractionMode mode_; |
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875 |
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876 public: |
| 4205 | 877 explicit GetImageHandler(ImageExtractionMode mode) : |
|
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878 mode_(mode) |
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879 { |
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880 } |
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881 |
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882 virtual void Handle(RestApiGetCall& call, |
|
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883 std::unique_ptr<ImageAccessor>& decoded, |
|
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884 const DicomMap& dicom) ORTHANC_OVERRIDE |
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885 { |
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886 bool invert = false; |
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887 |
|
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888 if (mode_ == ImageExtractionMode_Preview) |
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889 { |
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890 DicomImageInformation info(dicom); |
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891 invert = (info.GetPhotometricInterpretation() == PhotometricInterpretation_Monochrome1); |
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892 } |
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893 |
|
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894 DefaultHandler(call, decoded, mode_, invert); |
|
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895 } |
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896 |
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897 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
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898 { |
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899 return mode_ == ImageExtractionMode_Preview; |
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900 } |
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901 }; |
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902 |
|
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|
903 |
|
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|
904 class RenderedFrameHandler : public IDecodedFrameHandler |
|
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905 { |
|
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906 private: |
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907 static void GetDicomParameters(bool& invert, |
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908 float& rescaleSlope, |
|
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|
909 float& rescaleIntercept, |
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|
910 float& windowWidth, |
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911 float& windowCenter, |
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|
912 const DicomMap& dicom) |
|
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913 { |
|
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|
914 DicomImageInformation info(dicom); |
|
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|
915 |
|
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916 invert = (info.GetPhotometricInterpretation() == PhotometricInterpretation_Monochrome1); |
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|
917 |
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918 rescaleSlope = 1.0f; |
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919 rescaleIntercept = 0.0f; |
|
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920 |
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921 if (dicom.HasTag(Orthanc::DICOM_TAG_RESCALE_SLOPE) && |
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922 dicom.HasTag(Orthanc::DICOM_TAG_RESCALE_INTERCEPT)) |
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|
923 { |
|
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924 dicom.ParseFloat(rescaleSlope, Orthanc::DICOM_TAG_RESCALE_SLOPE); |
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925 dicom.ParseFloat(rescaleIntercept, Orthanc::DICOM_TAG_RESCALE_INTERCEPT); |
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926 } |
|
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|
927 |
|
3816
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928 windowWidth = static_cast<float>(1 << info.GetBitsStored()) * rescaleSlope; |
|
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929 windowCenter = windowWidth / 2.0f + rescaleIntercept; |
|
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|
930 |
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|
931 if (dicom.HasTag(Orthanc::DICOM_TAG_WINDOW_CENTER) && |
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|
932 dicom.HasTag(Orthanc::DICOM_TAG_WINDOW_WIDTH)) |
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|
933 { |
|
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|
934 dicom.ParseFirstFloat(windowCenter, Orthanc::DICOM_TAG_WINDOW_CENTER); |
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|
935 dicom.ParseFirstFloat(windowWidth, Orthanc::DICOM_TAG_WINDOW_WIDTH); |
|
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|
936 } |
|
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|
937 } |
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|
938 |
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|
939 static void GetUserArguments(float& windowWidth /* inout */, |
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|
940 float& windowCenter /* inout */, |
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|
941 unsigned int& argWidth, |
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|
942 unsigned int& argHeight, |
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|
943 bool& smooth, |
| 4205 | 944 const RestApiGetCall& call) |
|
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|
945 { |
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|
946 static const char* ARG_WINDOW_CENTER = "window-center"; |
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|
947 static const char* ARG_WINDOW_WIDTH = "window-width"; |
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|
948 static const char* ARG_WIDTH = "width"; |
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|
949 static const char* ARG_HEIGHT = "height"; |
|
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|
950 static const char* ARG_SMOOTH = "smooth"; |
|
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|
951 |
|
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|
952 if (call.HasArgument(ARG_WINDOW_WIDTH)) |
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|
953 { |
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|
954 try |
|
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|
955 { |
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|
956 windowWidth = boost::lexical_cast<float>(call.GetArgument(ARG_WINDOW_WIDTH, "")); |
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|
957 } |
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|
958 catch (boost::bad_lexical_cast&) |
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|
959 { |
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|
960 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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961 "Bad value for argument: " + std::string(ARG_WINDOW_WIDTH)); |
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|
962 } |
|
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|
963 } |
|
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|
964 |
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|
965 if (call.HasArgument(ARG_WINDOW_CENTER)) |
|
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|
966 { |
|
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|
967 try |
|
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|
968 { |
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|
969 windowCenter = boost::lexical_cast<float>(call.GetArgument(ARG_WINDOW_CENTER, "")); |
|
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parents:
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diff
changeset
|
970 } |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
971 catch (boost::bad_lexical_cast&) |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
972 { |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
973 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
974 "Bad value for argument: " + std::string(ARG_WINDOW_CENTER)); |
|
2cc34837d694
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parents:
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diff
changeset
|
975 } |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
976 } |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
977 |
|
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implementation of "/instances/.../rendered" for grayscale images
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parents:
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diff
changeset
|
978 argWidth = 0; |
|
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
979 argHeight = 0; |
|
3685
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rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
980 |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
981 if (call.HasArgument(ARG_WIDTH)) |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
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3683
diff
changeset
|
982 { |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
983 try |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
984 { |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
985 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_WIDTH, "")); |
|
3685
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rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
986 if (tmp < 0) |
|
2cc34837d694
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parents:
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diff
changeset
|
987 { |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
988 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
989 "Argument cannot be negative: " + std::string(ARG_WIDTH)); |
|
3685
2cc34837d694
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
990 } |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
991 else |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
992 { |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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parents:
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diff
changeset
|
993 argWidth = static_cast<unsigned int>(tmp); |
|
3685
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rendering of RGB24
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diff
changeset
|
994 } |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
995 } |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
996 catch (boost::bad_lexical_cast&) |
|
2cc34837d694
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parents:
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diff
changeset
|
997 { |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
998 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
999 "Bad value for argument: " + std::string(ARG_WIDTH)); |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1000 } |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1001 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1002 |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1003 if (call.HasArgument(ARG_HEIGHT)) |
|
3685
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rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
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3683
diff
changeset
|
1004 { |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1005 try |
|
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rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1006 { |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1007 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_HEIGHT, "")); |
|
3685
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rendering of RGB24
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diff
changeset
|
1008 if (tmp < 0) |
|
2cc34837d694
rendering of RGB24
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changeset
|
1009 { |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
1010 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1011 "Argument cannot be negative: " + std::string(ARG_HEIGHT)); |
|
3685
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|
1012 } |
|
2cc34837d694
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diff
changeset
|
1013 else |
|
2cc34837d694
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diff
changeset
|
1014 { |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1015 argHeight = static_cast<unsigned int>(tmp); |
|
3685
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diff
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|
1016 } |
|
2cc34837d694
rendering of RGB24
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|
1017 } |
|
2cc34837d694
rendering of RGB24
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changeset
|
1018 catch (boost::bad_lexical_cast&) |
|
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diff
changeset
|
1019 { |
|
2cc34837d694
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diff
changeset
|
1020 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1021 "Bad value for argument: " + std::string(ARG_HEIGHT)); |
|
3685
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diff
changeset
|
1022 } |
|
2cc34837d694
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changeset
|
1023 } |
|
2cc34837d694
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changeset
|
1024 |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1025 smooth = false; |
|
3685
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diff
changeset
|
1026 |
|
2cc34837d694
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parents:
3683
diff
changeset
|
1027 if (call.HasArgument(ARG_SMOOTH)) |
|
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changeset
|
1028 { |
|
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changeset
|
1029 std::string value = call.GetArgument(ARG_SMOOTH, ""); |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
1030 if (value == "0" || |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
1031 value == "false") |
|
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diff
changeset
|
1032 { |
|
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changeset
|
1033 smooth = false; |
|
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diff
changeset
|
1034 } |
|
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changeset
|
1035 else if (value == "1" || |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
1036 value == "true") |
|
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diff
changeset
|
1037 { |
|
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changeset
|
1038 smooth = true; |
|
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changeset
|
1039 } |
|
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changeset
|
1040 else |
|
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changeset
|
1041 { |
|
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rendering of RGB24
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changeset
|
1042 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
1043 "Argument must be Boolean: " + std::string(ARG_SMOOTH)); |
|
2cc34837d694
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changeset
|
1044 } |
|
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diff
changeset
|
1045 } |
|
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changeset
|
1046 } |
|
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changeset
|
1047 |
|
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changeset
|
1048 |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1049 public: |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1050 virtual void Handle(RestApiGetCall& call, |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
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diff
changeset
|
1051 std::unique_ptr<ImageAccessor>& decoded, |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1052 const DicomMap& dicom) ORTHANC_OVERRIDE |
|
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changeset
|
1053 { |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1054 bool invert; |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1055 float rescaleSlope, rescaleIntercept, windowWidth, windowCenter; |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1056 GetDicomParameters(invert, rescaleSlope, rescaleIntercept, windowWidth, windowCenter, dicom); |
| 3686 | 1057 |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1058 unsigned int argWidth, argHeight; |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1059 bool smooth; |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1060 GetUserArguments(windowWidth, windowCenter, argWidth, argHeight, smooth, call); |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1061 |
|
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diff
changeset
|
1062 unsigned int targetWidth = decoded->GetWidth(); |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1063 unsigned int targetHeight = decoded->GetHeight(); |
| 3686 | 1064 |
| 1065 if (decoded->GetWidth() != 0 && | |
| 1066 decoded->GetHeight() != 0) | |
| 1067 { | |
| 1068 float ratio = 1; | |
| 1069 | |
|
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changeset
|
1070 if (argWidth != 0 && |
|
a9ce35d67c3c
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diff
changeset
|
1071 argHeight != 0) |
| 3686 | 1072 { |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1073 float ratioX = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1074 float ratioY = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
|
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1075 ratio = std::min(ratioX, ratioY); |
| 3686 | 1076 } |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1077 else if (argWidth != 0) |
| 3686 | 1078 { |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1079 ratio = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
| 3686 | 1080 } |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1081 else if (argHeight != 0) |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1082 { |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1083 ratio = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1084 } |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1085 |
|
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implementation of "/instances/.../rendered" for grayscale images
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|
1086 targetWidth = boost::math::iround(ratio * static_cast<float>(decoded->GetWidth())); |
|
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1087 targetHeight = boost::math::iround(ratio * static_cast<float>(decoded->GetHeight())); |
| 3686 | 1088 } |
| 1089 | |
|
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|
1090 if (decoded->GetFormat() == PixelFormat_RGB24) |
|
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|
1091 { |
|
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|
1092 if (targetWidth == decoded->GetWidth() && |
|
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1093 targetHeight == decoded->GetHeight()) |
|
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|
1094 { |
|
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|
1095 DefaultHandler(call, decoded, ImageExtractionMode_Preview, false); |
|
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1096 } |
|
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|
1097 else |
|
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1098 { |
|
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|
1099 std::unique_ptr<ImageAccessor> resized( |
|
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|
1100 new Image(decoded->GetFormat(), targetWidth, targetHeight, false)); |
|
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|
1101 |
|
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|
1102 if (smooth && |
|
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1103 (targetWidth < decoded->GetWidth() || |
|
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|
1104 targetHeight < decoded->GetHeight())) |
|
3685
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1105 { |
|
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|
1106 ImageProcessing::SmoothGaussian5x5(*decoded, false /* be fast, don't round */); |
|
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1107 } |
|
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|
1108 |
|
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|
1109 ImageProcessing::Resize(*resized, *decoded); |
|
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|
1110 DefaultHandler(call, resized, ImageExtractionMode_Preview, false); |
|
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1111 } |
|
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|
1112 } |
| 3686 | 1113 else |
| 1114 { | |
|
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|
1115 // Grayscale image: (1) convert to Float32, (2) apply |
|
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|
1116 // windowing to get a Grayscale8, (3) possibly resize |
|
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|
1117 |
|
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1118 Image converted(PixelFormat_Float32, decoded->GetWidth(), decoded->GetHeight(), false); |
|
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|
1119 ImageProcessing::Convert(converted, *decoded); |
|
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1120 |
|
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|
1121 // Avoid divisions by zero |
|
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1122 if (windowWidth <= 1.0f) |
|
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1123 { |
|
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|
1124 windowWidth = 1; |
|
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|
1125 } |
|
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|
1126 |
|
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|
1127 if (std::abs(rescaleSlope) <= 0.1f) |
|
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|
1128 { |
|
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|
1129 rescaleSlope = 0.1f; |
|
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|
1130 } |
|
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|
1131 |
|
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|
1132 const float scaling = 255.0f * rescaleSlope / windowWidth; |
|
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|
1133 const float offset = (rescaleIntercept - windowCenter + windowWidth / 2.0f) / rescaleSlope; |
|
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|
1134 |
|
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|
1135 std::unique_ptr<ImageAccessor> rescaled(new Image(PixelFormat_Grayscale8, decoded->GetWidth(), decoded->GetHeight(), false)); |
|
3690
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|
1136 ImageProcessing::ShiftScale(*rescaled, converted, offset, scaling, false); |
|
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|
1137 |
|
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|
1138 if (targetWidth == decoded->GetWidth() && |
|
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|
1139 targetHeight == decoded->GetHeight()) |
|
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|
1140 { |
|
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|
1141 DefaultHandler(call, rescaled, ImageExtractionMode_UInt8, invert); |
|
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|
1142 } |
|
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|
1143 else |
|
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|
1144 { |
|
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|
1145 std::unique_ptr<ImageAccessor> resized( |
|
3690
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|
1146 new Image(PixelFormat_Grayscale8, targetWidth, targetHeight, false)); |
|
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|
1147 |
|
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|
1148 if (smooth && |
|
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|
1149 (targetWidth < decoded->GetWidth() || |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1150 targetHeight < decoded->GetHeight())) |
|
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changeset
|
1151 { |
|
4065
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1152 ImageProcessing::SmoothGaussian5x5(*rescaled, false /* be fast, don't round */); |
|
3690
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|
1153 } |
|
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|
1154 |
|
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|
1155 ImageProcessing::Resize(*resized, *rescaled); |
|
a9ce35d67c3c
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changeset
|
1156 DefaultHandler(call, resized, ImageExtractionMode_UInt8, invert); |
|
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|
1157 } |
| 3686 | 1158 } |
|
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|
1159 } |
|
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1160 |
|
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|
1161 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
|
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1162 { |
|
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|
1163 return true; |
|
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1164 } |
|
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|
1165 }; |
|
3600
4066998150ef
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Alain Mazy <alain@mazy.be>
parents:
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diff
changeset
|
1166 } |
|
4066998150ef
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|
1167 |
|
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|
1168 |
|
751
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changeset
|
1169 template <enum ImageExtractionMode mode> |
| 974 | 1170 static void GetImage(RestApiGetCall& call) |
|
751
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changeset
|
1171 { |
|
3926
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|
1172 Semaphore::Locker locker(throttlingSemaphore_); |
|
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Allow concurrent calls to the custom image decoders provided by the plugins
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|
1173 |
|
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changeset
|
1174 GetImageHandler handler(mode); |
|
4406
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changeset
|
1175 IDecodedFrameHandler::Apply(call, handler, mode, false /* not rendered */); |
|
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|
1176 } |
|
1906
d7c1cb559431
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parents:
1902
diff
changeset
|
1177 |
|
1826
ac5b0b4e2434
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1824
diff
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|
1178 |
|
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|
1179 static void GetRenderedFrame(RestApiGetCall& call) |
|
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|
1180 { |
|
3926
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changeset
|
1181 Semaphore::Locker locker(throttlingSemaphore_); |
|
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changeset
|
1182 |
|
3683
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changeset
|
1183 RenderedFrameHandler handler; |
|
4406
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changeset
|
1184 IDecodedFrameHandler::Apply(call, handler, ImageExtractionMode_Preview /* arbitrary value */, true); |
|
751
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changeset
|
1185 } |
|
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changeset
|
1186 |
|
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diff
changeset
|
1187 |
| 974 | 1188 static void GetMatlabImage(RestApiGetCall& call) |
|
874
87791ebc1f50
download matlab images
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831
diff
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|
1189 { |
| 4414 | 1190 if (call.IsDocumentation()) |
| 1191 { | |
| 1192 std::string description; | |
| 1193 | |
| 1194 if (call.HasUriComponent("frame")) | |
| 1195 { | |
| 1196 description = "Decode one frame of interest from the given DICOM instance"; | |
| 1197 call.GetDocumentation() | |
| 1198 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); | |
| 1199 } | |
| 1200 else | |
| 1201 { | |
| 1202 description = "Decode the first frame of the given DICOM instance."; | |
| 1203 } | |
| 1204 | |
| 1205 call.GetDocumentation() | |
| 1206 .SetTag("Instances") | |
| 1207 .SetSummary("Decode frame for Matlab") | |
| 1208 .SetDescription(description + ", and export this frame as a Octave/Matlab matrix to be imported with `eval()`: " | |
| 1209 "https://book.orthanc-server.com/faq/matlab.html") | |
| 1210 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 1211 .AddAnswerType(MimeType_PlainText, "Octave/Matlab matrix"); | |
| 1212 return; | |
| 1213 } | |
| 1214 | |
|
3926
2910b0d30fe0
Allow concurrent calls to the custom image decoders provided by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3816
diff
changeset
|
1215 Semaphore::Locker locker(throttlingSemaphore_); |
|
2910b0d30fe0
Allow concurrent calls to the custom image decoders provided by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3816
diff
changeset
|
1216 |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1217 ServerContext& context = OrthancRestApi::GetContext(call); |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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831
diff
changeset
|
1218 |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1219 std::string frameId = call.GetUriComponent("frame", "0"); |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1220 |
|
87791ebc1f50
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1221 unsigned int frame; |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1222 try |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1223 { |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1224 frame = boost::lexical_cast<unsigned int>(frameId); |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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831
diff
changeset
|
1225 } |
|
2836
7133ad478eea
fix Debian warnings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2804
diff
changeset
|
1226 catch (boost::bad_lexical_cast&) |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1227 { |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1228 return; |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1229 } |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1230 |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1231 std::string publicId = call.GetUriComponent("id", ""); |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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3926
diff
changeset
|
1232 std::unique_ptr<ImageAccessor> decoded(context.DecodeDicomFrame(publicId, frame)); |
|
874
87791ebc1f50
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Sebastien Jodogne <s.jodogne@gmail.com>
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831
diff
changeset
|
1233 |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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3926
diff
changeset
|
1234 if (decoded.get() == NULL) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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3926
diff
changeset
|
1235 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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3926
diff
changeset
|
1236 throw OrthancException(ErrorCode_NotImplemented, |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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3926
diff
changeset
|
1237 "Cannot decode DICOM instance with ID: " + publicId); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
1238 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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3926
diff
changeset
|
1239 else |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
1240 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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3926
diff
changeset
|
1241 std::string result; |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
1242 decoded->ToMatlabString(result); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
1243 call.GetOutput().AnswerBuffer(result, MimeType_PlainText); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1244 } |
|
874
87791ebc1f50
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diff
changeset
|
1245 } |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1246 |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1247 |
|
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1248 template <bool GzipCompression> |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1906
diff
changeset
|
1249 static void GetRawFrame(RestApiGetCall& call) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1250 { |
| 4408 | 1251 if (call.IsDocumentation()) |
| 1252 { | |
| 1253 call.GetDocumentation() | |
| 1254 .SetTag("Instances") | |
| 1255 .SetSummary("Access raw frame" + std::string(GzipCompression ? " (compressed)" : "")) | |
| 1256 .SetDescription("Access the raw content of one individual frame of the DICOM instance of interest, " | |
| 1257 "bypassing image decoding. This is notably useful to access the source files " | |
| 1258 "in compressed transfer syntaxes." + | |
| 1259 std::string(GzipCompression ? " The image is compressed using gzip" : "")) | |
| 1260 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); | |
| 1261 | |
| 1262 if (GzipCompression) | |
| 1263 { | |
| 1264 call.GetDocumentation().AddAnswerType(MimeType_Gzip, "The raw frame, compressed using gzip"); | |
| 1265 } | |
| 1266 else | |
| 1267 { | |
| 1268 call.GetDocumentation().AddAnswerType(MimeType_Binary, "The raw frame"); | |
| 1269 } | |
| 1270 return; | |
| 1271 } | |
| 1272 | |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1906
diff
changeset
|
1273 std::string frameId = call.GetUriComponent("frame", "0"); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1274 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1906
diff
changeset
|
1275 unsigned int frame; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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1906
diff
changeset
|
1276 try |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1277 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1906
diff
changeset
|
1278 frame = boost::lexical_cast<unsigned int>(frameId); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1906
diff
changeset
|
1279 } |
|
2836
7133ad478eea
fix Debian warnings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2804
diff
changeset
|
1280 catch (boost::bad_lexical_cast&) |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1281 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1282 return; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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1906
diff
changeset
|
1283 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1284 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1906
diff
changeset
|
1285 std::string publicId = call.GetUriComponent("id", ""); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1286 std::string raw; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1287 MimeType mime; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1288 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1289 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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1906
diff
changeset
|
1290 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1906
diff
changeset
|
1291 locker.GetDicom().GetRawFrame(raw, mime, frame); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1906
diff
changeset
|
1292 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1906
diff
changeset
|
1293 |
|
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1294 if (GzipCompression) |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1295 { |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1296 GzipCompressor gzip; |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1297 std::string compressed; |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1298 gzip.Compress(compressed, raw.empty() ? NULL : raw.c_str(), raw.size()); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1299 call.GetOutput().AnswerBuffer(compressed, MimeType_Gzip); |
|
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1300 } |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
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2382
diff
changeset
|
1301 else |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1302 { |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1303 call.GetOutput().AnswerBuffer(raw, mime); |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1304 } |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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parents:
1906
diff
changeset
|
1305 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1306 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1307 |
| 974 | 1308 static void GetResourceStatistics(RestApiGetCall& call) |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1309 { |
|
3174
8ea7c4546c3a
primitives to collect metrics in Orthanc
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diff
changeset
|
1310 static const uint64_t MEGA_BYTES = 1024 * 1024; |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1311 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1312 std::string publicId = call.GetUriComponent("id", ""); |
|
3174
8ea7c4546c3a
primitives to collect metrics in Orthanc
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diff
changeset
|
1313 |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
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diff
changeset
|
1314 ResourceType type; |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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3163
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changeset
|
1315 uint64_t diskSize, uncompressedSize, dicomDiskSize, dicomUncompressedSize; |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1316 unsigned int countStudies, countSeries, countInstances; |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
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diff
changeset
|
1317 OrthancRestApi::GetIndex(call).GetResourceStatistics( |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
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diff
changeset
|
1318 type, diskSize, uncompressedSize, countStudies, countSeries, |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1319 countInstances, dicomDiskSize, dicomUncompressedSize, publicId); |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1320 |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1321 Json::Value result = Json::objectValue; |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1322 result["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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3163
diff
changeset
|
1323 result["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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3163
diff
changeset
|
1324 result["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
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diff
changeset
|
1325 result["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1326 |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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3163
diff
changeset
|
1327 result["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
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changeset
|
1328 result["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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3163
diff
changeset
|
1329 result["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
|
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1330 result["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
|
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1331 |
|
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|
1332 switch (type) |
|
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1333 { |
|
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1334 // Do NOT add "break" below this point! |
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1335 case ResourceType_Patient: |
|
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1336 result["CountStudies"] = countStudies; |
|
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1337 |
|
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|
1338 case ResourceType_Study: |
|
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1339 result["CountSeries"] = countSeries; |
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1340 |
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1341 case ResourceType_Series: |
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1342 result["CountInstances"] = countInstances; |
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1343 |
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1344 case ResourceType_Instance: |
|
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1345 default: |
|
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1346 break; |
|
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1347 } |
|
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|
1348 |
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|
1349 call.GetOutput().AnswerJson(result); |
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1350 } |
|
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|
1351 |
|
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|
1352 |
|
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|
1353 |
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|
1354 // Handling of metadata ----------------------------------------------------- |
|
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|
1355 |
| 4205 | 1356 static void CheckValidResourceType(const RestApiCall& call) |
|
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1357 { |
| 4409 | 1358 const std::string resourceType = call.GetFullUri() [0]; |
|
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1359 StringToResourceType(resourceType.c_str()); |
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1360 } |
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|
1361 |
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|
1362 |
| 974 | 1363 static void ListMetadata(RestApiGetCall& call) |
|
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|
1364 { |
| 4414 | 1365 if (call.IsDocumentation()) |
| 1366 { | |
| 1367 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1368 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1369 call.GetDocumentation() | |
| 1370 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1371 .SetSummary("List metadata") | |
| 1372 .SetDescription("Get the list of metadata that are associated with the given " + r) | |
| 1373 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1374 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, | |
| 1375 "If present, also retrieve the value of the individual metadata", false) | |
| 1376 .AddAnswerType(MimeType_Json, "JSON array containing the names of the available metadata, " | |
| 1377 "or JSON associative array mapping metadata to their values (if `expand` argument is provided)") | |
| 1378 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/metadata", true); | |
| 1379 return; | |
| 1380 } | |
| 1381 | |
|
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|
1382 CheckValidResourceType(call); |
|
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|
1383 |
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1384 std::string publicId = call.GetUriComponent("id", ""); |
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|
1385 std::map<MetadataType, std::string> metadata; |
|
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1386 |
|
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|
1387 OrthancRestApi::GetIndex(call).GetAllMetadata(metadata, publicId); |
|
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|
1388 |
|
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|
1389 Json::Value result; |
|
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1390 |
|
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|
1391 if (call.HasArgument("expand")) |
|
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1392 { |
|
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|
1393 result = Json::objectValue; |
|
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1394 |
|
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1395 for (std::map<MetadataType, std::string>::const_iterator |
|
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1396 it = metadata.begin(); it != metadata.end(); ++it) |
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|
1397 { |
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1398 std::string key = EnumerationToString(it->first); |
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1399 result[key] = it->second; |
|
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1400 } |
|
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1401 } |
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1402 else |
|
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|
1403 { |
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|
1404 result = Json::arrayValue; |
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1405 |
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1406 for (std::map<MetadataType, std::string>::const_iterator |
|
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1407 it = metadata.begin(); it != metadata.end(); ++it) |
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|
1408 { |
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|
1409 result.append(EnumerationToString(it->first)); |
|
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1410 } |
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1411 } |
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|
1412 |
|
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|
1413 call.GetOutput().AnswerJson(result); |
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|
1414 } |
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|
1415 |
|
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1416 |
| 974 | 1417 static void GetMetadata(RestApiGetCall& call) |
|
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|
1418 { |
| 4414 | 1419 if (call.IsDocumentation()) |
| 1420 { | |
| 1421 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1422 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1423 call.GetDocumentation() | |
| 1424 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1425 .SetSummary("Get metadata") | |
| 1426 .SetDescription("Get the value of a metadata that is associated with the given " + r) | |
| 1427 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1428 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
| 1429 .AddAnswerType(MimeType_PlainText, "Value of the metadata"); | |
| 1430 return; | |
| 1431 } | |
| 1432 | |
|
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|
1433 CheckValidResourceType(call); |
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|
1434 |
|
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|
1435 std::string publicId = call.GetUriComponent("id", ""); |
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|
1436 std::string name = call.GetUriComponent("name", ""); |
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|
1437 MetadataType metadata = StringToMetadata(name); |
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|
1438 |
|
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|
1439 std::string value; |
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|
1440 if (OrthancRestApi::GetIndex(call).LookupMetadata(value, publicId, metadata)) |
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|
1441 { |
|
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|
1442 call.GetOutput().AnswerBuffer(value, MimeType_PlainText); |
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1443 } |
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1444 } |
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|
1445 |
|
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1446 |
| 974 | 1447 static void DeleteMetadata(RestApiDeleteCall& call) |
|
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|
1448 { |
| 4414 | 1449 if (call.IsDocumentation()) |
| 1450 { | |
| 1451 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1452 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1453 call.GetDocumentation() | |
| 1454 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1455 .SetSummary("Delete metadata") | |
| 1456 .SetDescription("Delete some metadata associated with the given DICOM " + r + | |
| 1457 ". This call will fail if trying to delete a system metadata (i.e. whose index is < 1024).") | |
| 1458 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1459 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)"); | |
| 1460 return; | |
| 1461 } | |
| 1462 | |
|
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|
1463 CheckValidResourceType(call); |
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|
1464 |
|
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|
1465 std::string publicId = call.GetUriComponent("id", ""); |
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|
1466 std::string name = call.GetUriComponent("name", ""); |
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|
1467 MetadataType metadata = StringToMetadata(name); |
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|
1468 |
|
1773
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diff
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|
1469 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
|
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|
1470 { |
|
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|
1471 OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata); |
|
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|
1472 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
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1473 } |
|
2128
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|
1474 else |
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|
1475 { |
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1476 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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|
1477 } |
|
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1478 } |
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1479 |
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1480 |
| 974 | 1481 static void SetMetadata(RestApiPutCall& call) |
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1482 { |
| 4414 | 1483 if (call.IsDocumentation()) |
| 1484 { | |
| 1485 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1486 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1487 call.GetDocumentation() | |
| 1488 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1489 .SetSummary("Set metadata") | |
| 1490 .SetDescription("Set the value of some metadata in the given DICOM " + r + | |
| 1491 ". This call will fail if trying to modify a system metadata (i.e. whose index is < 1024).") | |
| 1492 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1493 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
| 1494 .AddRequestType(MimeType_PlainText, "String value of the metadata"); | |
| 1495 return; | |
| 1496 } | |
| 1497 | |
|
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1498 CheckValidResourceType(call); |
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1499 |
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|
1500 std::string publicId = call.GetUriComponent("id", ""); |
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|
1501 std::string name = call.GetUriComponent("name", ""); |
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1502 MetadataType metadata = StringToMetadata(name); |
|
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8dc80ba768aa
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1437
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|
1503 |
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1437
diff
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|
1504 std::string value; |
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1437
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|
1505 call.BodyToString(value); |
|
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|
1506 |
|
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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1759
diff
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|
1507 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
|
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1508 { |
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1509 // It is forbidden to modify internal metadata |
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1510 OrthancRestApi::GetIndex(call).SetMetadata(publicId, metadata, value); |
|
2908
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1511 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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1512 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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2127
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1513 else |
|
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2127
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|
1514 { |
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|
1515 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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|
1516 } |
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1517 } |
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|
1518 |
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|
1519 |
|
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|
1520 |
|
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|
1521 |
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|
1522 // Handling of attached files ----------------------------------------------- |
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1523 |
| 974 | 1524 static void ListAttachments(RestApiGetCall& call) |
|
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1525 { |
| 4409 | 1526 if (call.IsDocumentation()) |
| 1527 { | |
| 1528 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1529 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1530 call.GetDocumentation() | |
| 1531 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1532 .SetSummary("List attachments") | |
| 1533 .SetDescription("Get the list of attachments that are associated with the given " + r) | |
| 1534 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1535 .AddAnswerType(MimeType_Json, "JSON array containing the names of the attachments") | |
| 1536 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/attachments", true); | |
| 1537 return; | |
| 1538 } | |
| 1539 | |
| 1540 const std::string resourceType = call.GetFullUri() [0]; | |
| 1541 const std::string publicId = call.GetUriComponent("id", ""); | |
|
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|
1542 std::list<FileContentType> attachments; |
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|
1543 OrthancRestApi::GetIndex(call).ListAvailableAttachments(attachments, publicId, StringToResourceType(resourceType.c_str())); |
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1544 |
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|
1545 Json::Value result = Json::arrayValue; |
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1546 |
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|
1547 for (std::list<FileContentType>::const_iterator |
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|
1548 it = attachments.begin(); it != attachments.end(); ++it) |
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|
1549 { |
|
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|
1550 result.append(EnumerationToString(*it)); |
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|
1551 } |
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|
1552 |
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|
1553 call.GetOutput().AnswerJson(result); |
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|
1554 } |
|
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|
1555 |
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|
1556 |
| 974 | 1557 static bool GetAttachmentInfo(FileInfo& info, RestApiCall& call) |
|
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1558 { |
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|
1559 CheckValidResourceType(call); |
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|
1560 |
|
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|
1561 std::string publicId = call.GetUriComponent("id", ""); |
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|
1562 std::string name = call.GetUriComponent("name", ""); |
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|
1563 FileContentType contentType = StringToContentType(name); |
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|
1564 |
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|
1565 return OrthancRestApi::GetIndex(call).LookupAttachment(info, publicId, contentType); |
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|
1566 } |
|
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|
1567 |
|
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|
1568 |
| 974 | 1569 static void GetAttachmentOperations(RestApiGetCall& call) |
|
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|
1570 { |
| 4409 | 1571 if (call.IsDocumentation()) |
| 1572 { | |
| 1573 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1574 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1575 call.GetDocumentation() | |
| 1576 .SetTag("Other") | |
| 4414 | 1577 .SetSummary("List operations on attachments") |
| 1578 .SetDescription("Get the list of the operations that are available for attachments associated with the given " + r) | |
| 4409 | 1579 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 1580 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4409 | 1581 .AddAnswerType(MimeType_Json, "List of the available operations") |
| 1582 .SetHttpGetSample("https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2/attachments/dicom", true); | |
| 1583 return; | |
| 1584 } | |
| 1585 | |
|
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|
1586 FileInfo info; |
|
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|
1587 if (GetAttachmentInfo(info, call)) |
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|
1588 { |
|
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|
1589 Json::Value operations = Json::arrayValue; |
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|
1590 |
|
1700
f5ddbd9239dd
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|
1591 operations.append("compress"); |
|
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|
1592 operations.append("compressed-data"); |
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|
1593 |
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1594 if (info.GetCompressedMD5() != "") |
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|
1595 { |
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|
1596 operations.append("compressed-md5"); |
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1597 } |
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|
1598 |
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|
1599 operations.append("compressed-size"); |
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1600 operations.append("data"); |
|
1700
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|
1601 operations.append("is-compressed"); |
|
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1602 |
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1603 if (info.GetUncompressedMD5() != "") |
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1604 { |
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1605 operations.append("md5"); |
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|
1606 } |
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|
1607 |
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1608 operations.append("size"); |
|
1700
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|
1609 operations.append("uncompress"); |
|
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|
1610 |
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|
1611 if (info.GetCompressedMD5() != "" && |
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|
1612 info.GetUncompressedMD5() != "") |
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|
1613 { |
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|
1614 operations.append("verify-md5"); |
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|
1615 } |
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|
1616 |
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|
1617 call.GetOutput().AnswerJson(operations); |
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1618 } |
|
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|
1619 } |
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|
1620 |
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|
1621 |
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|
1622 template <int uncompress> |
| 974 | 1623 static void GetAttachmentData(RestApiGetCall& call) |
|
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1624 { |
| 4409 | 1625 if (call.IsDocumentation()) |
| 1626 { | |
| 1627 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1628 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1629 call.GetDocumentation() | |
| 1630 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1631 .SetSummary("Get attachment" + std::string(uncompress ? "" : " (no decompression)")) | |
| 1632 .SetDescription("Get the (binary) content of one attachment associated with the given " + r + | |
| 1633 std::string(uncompress ? "" : ". The attachment will not be decompressed if `StorageCompression` if `true`.")) | |
| 1634 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 1635 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4409 | 1636 .AddAnswerType(MimeType_Binary, "The attachment"); |
| 1637 return; | |
| 1638 } | |
| 1639 | |
|
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|
1640 ServerContext& context = OrthancRestApi::GetContext(call); |
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|
1641 |
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|
1642 CheckValidResourceType(call); |
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|
1643 |
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|
1644 std::string publicId = call.GetUriComponent("id", ""); |
|
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|
1645 FileContentType type = StringToContentType(call.GetUriComponent("name", "")); |
|
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1646 |
|
1146
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1647 if (uncompress) |
|
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diff
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|
1648 { |
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|
1649 context.AnswerAttachment(call.GetOutput(), publicId, type); |
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|
1650 } |
|
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|
1651 else |
|
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|
1652 { |
|
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diff
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|
1653 // Return the raw data (possibly compressed), as stored on the filesystem |
|
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diff
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|
1654 std::string content; |
|
2128
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diff
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|
1655 context.ReadAttachment(content, publicId, type, false); |
|
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|
1656 call.GetOutput().AnswerBuffer(content, MimeType_Binary); |
|
1146
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|
1657 } |
|
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1658 } |
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|
1659 |
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|
1660 |
| 974 | 1661 static void GetAttachmentSize(RestApiGetCall& call) |
|
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|
1662 { |
| 4409 | 1663 if (call.IsDocumentation()) |
| 1664 { | |
| 1665 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1666 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1667 call.GetDocumentation() | |
| 1668 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1669 .SetSummary("Get size of attachment") | |
| 1670 .SetDescription("Get the size of one attachment associated with the given " + r) | |
| 1671 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 1672 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4409 | 1673 .AddAnswerType(MimeType_PlainText, "The size of the attachment"); |
| 1674 return; | |
| 1675 } | |
| 1676 | |
|
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|
1677 FileInfo info; |
|
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|
1678 if (GetAttachmentInfo(info, call)) |
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|
1679 { |
|
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|
1680 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedSize()), MimeType_PlainText); |
|
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|
1681 } |
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|
1682 } |
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|
1683 |
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|
1684 |
| 974 | 1685 static void GetAttachmentCompressedSize(RestApiGetCall& call) |
|
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|
1686 { |
| 4409 | 1687 if (call.IsDocumentation()) |
| 1688 { | |
| 1689 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1690 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1691 call.GetDocumentation() | |
| 1692 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 4410 | 1693 .SetSummary("Get size of attachment on disk") |
| 4409 | 1694 .SetDescription("Get the size of one attachment associated with the given " + r + ", as stored on the disk. " |
| 4413 | 1695 "This is different from `.../size` iff `EnableStorage` is `true`.") |
| 4409 | 1696 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 1697 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 1698 .AddAnswerType(MimeType_PlainText, "The size of the attachment, as stored on the disk"); |
| 4409 | 1699 return; |
| 1700 } | |
| 1701 | |
|
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|
1702 FileInfo info; |
|
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|
1703 if (GetAttachmentInfo(info, call)) |
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|
1704 { |
|
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|
1705 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedSize()), MimeType_PlainText); |
|
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|
1706 } |
|
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|
1707 } |
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|
1708 |
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|
1709 |
| 974 | 1710 static void GetAttachmentMD5(RestApiGetCall& call) |
|
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|
1711 { |
| 4410 | 1712 if (call.IsDocumentation()) |
| 1713 { | |
| 1714 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1715 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1716 call.GetDocumentation() | |
| 1717 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1718 .SetSummary("Get MD5 of attachment") | |
| 1719 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r) | |
| 1720 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 1721 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 1722 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment"); |
| 1723 return; | |
| 1724 } | |
| 1725 | |
|
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|
1726 FileInfo info; |
|
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|
1727 if (GetAttachmentInfo(info, call) && |
|
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|
1728 info.GetUncompressedMD5() != "") |
|
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|
1729 { |
|
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|
1730 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedMD5()), MimeType_PlainText); |
|
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|
1731 } |
|
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|
1732 } |
|
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|
1733 |
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|
1734 |
| 974 | 1735 static void GetAttachmentCompressedMD5(RestApiGetCall& call) |
|
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|
1736 { |
| 4410 | 1737 if (call.IsDocumentation()) |
| 1738 { | |
| 1739 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1740 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1741 call.GetDocumentation() | |
| 1742 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1743 .SetSummary("Get MD5 of attachment on disk") | |
| 1744 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r + ", as stored on the disk. " | |
| 4413 | 1745 "This is different from `.../md5` iff `EnableStorage` is `true`.") |
| 4410 | 1746 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 1747 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 1748 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment, as stored on the disk"); |
| 1749 return; | |
| 1750 } | |
| 1751 | |
|
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|
1752 FileInfo info; |
|
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|
1753 if (GetAttachmentInfo(info, call) && |
|
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|
1754 info.GetCompressedMD5() != "") |
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|
1755 { |
|
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|
1756 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedMD5()), MimeType_PlainText); |
|
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|
1757 } |
|
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|
1758 } |
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|
1759 |
|
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|
1760 |
| 974 | 1761 static void VerifyAttachment(RestApiPostCall& call) |
|
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|
1762 { |
| 4410 | 1763 if (call.IsDocumentation()) |
| 1764 { | |
| 1765 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1766 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1767 call.GetDocumentation() | |
| 1768 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1769 .SetSummary("Verify attachment") | |
| 1770 .SetDescription("Verify that the attachment is not corrupted, by validating its MD5 hash") | |
| 1771 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 1772 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 1773 .AddAnswerType(MimeType_Json, "On success, a valid JSON object is returned"); |
| 1774 return; | |
| 1775 } | |
| 1776 | |
|
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|
1777 ServerContext& context = OrthancRestApi::GetContext(call); |
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|
1778 CheckValidResourceType(call); |
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|
1779 |
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|
1780 std::string publicId = call.GetUriComponent("id", ""); |
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|
1781 std::string name = call.GetUriComponent("name", ""); |
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|
1782 |
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|
1783 FileInfo info; |
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|
1784 if (!GetAttachmentInfo(info, call) || |
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|
1785 info.GetCompressedMD5() == "" || |
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|
1786 info.GetUncompressedMD5() == "") |
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|
1787 { |
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1788 // Inexistent resource, or no MD5 available |
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|
1789 return; |
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|
1790 } |
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|
1791 |
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|
1792 bool ok = false; |
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|
1793 |
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1794 // First check whether the compressed data is correctly stored in the disk |
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|
1795 std::string data; |
|
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|
1796 context.ReadAttachment(data, publicId, StringToContentType(name), false); |
|
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|
1797 |
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|
1798 std::string actualMD5; |
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|
1799 Toolbox::ComputeMD5(actualMD5, data); |
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|
1800 |
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|
1801 if (actualMD5 == info.GetCompressedMD5()) |
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|
1802 { |
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|
1803 // The compressed data is OK. If a compression algorithm was |
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|
1804 // applied to it, now check the MD5 of the uncompressed data. |
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|
1805 if (info.GetCompressionType() == CompressionType_None) |
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|
1806 { |
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|
1807 ok = true; |
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|
1808 } |
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|
1809 else |
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1810 { |
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1811 context.ReadAttachment(data, publicId, StringToContentType(name), true); |
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1812 Toolbox::ComputeMD5(actualMD5, data); |
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1813 ok = (actualMD5 == info.GetUncompressedMD5()); |
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1814 } |
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1815 } |
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1816 |
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1817 if (ok) |
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1818 { |
|
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1819 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has the right MD5"; |
|
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1820 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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1821 } |
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1822 else |
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1823 { |
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1824 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has bad MD5!"; |
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1825 } |
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1826 } |
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1827 |
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1828 |
| 974 | 1829 static void UploadAttachment(RestApiPutCall& call) |
|
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1830 { |
| 4414 | 1831 if (call.IsDocumentation()) |
| 1832 { | |
| 1833 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1834 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1835 call.GetDocumentation() | |
| 1836 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1837 .SetSummary("Set attachment") | |
| 1838 .SetDescription("Attach a file to the given DICOM " + r + | |
| 1839 ". This call will fail if trying to modify a system attachment (i.e. whose index is < 1024).") | |
| 1840 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1841 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") | |
| 1842 .AddRequestType(MimeType_Binary, "Binary data containing the attachment") | |
| 1843 .AddAnswerType(MimeType_Json, "Empty JSON object in the case of a success"); | |
| 1844 return; | |
| 1845 } | |
| 1846 | |
|
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1847 ServerContext& context = OrthancRestApi::GetContext(call); |
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1848 CheckValidResourceType(call); |
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1849 |
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1850 std::string publicId = call.GetUriComponent("id", ""); |
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1851 std::string name = call.GetUriComponent("name", ""); |
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1852 |
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1853 FileContentType contentType = StringToContentType(name); |
|
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diff
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|
1854 if (IsUserContentType(contentType) && // It is forbidden to modify internal attachments |
|
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|
1855 context.AddAttachment(publicId, StringToContentType(name), call.GetBodyData(), call.GetBodySize())) |
|
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1856 { |
|
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1857 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
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1858 } |
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1859 else |
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1860 { |
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1861 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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1862 } |
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1863 } |
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1864 |
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1865 |
| 974 | 1866 static void DeleteAttachment(RestApiDeleteCall& call) |
|
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1867 { |
| 4413 | 1868 if (call.IsDocumentation()) |
| 1869 { | |
| 1870 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1871 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1872 call.GetDocumentation() | |
| 1873 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1874 .SetSummary("Delete attachment") | |
| 4414 | 1875 .SetDescription("Delete an attachment associated with the given DICOM " + r + |
| 1876 ". This call will fail if trying to delete a system attachment (i.e. whose index is < 1024).") | |
| 4413 | 1877 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 1878 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)"); |
| 4413 | 1879 return; |
| 1880 } | |
| 1881 | |
|
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1882 CheckValidResourceType(call); |
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1883 |
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1884 std::string publicId = call.GetUriComponent("id", ""); |
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1885 std::string name = call.GetUriComponent("name", ""); |
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1886 FileContentType contentType = StringToContentType(name); |
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1887 |
|
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1888 bool allowed; |
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1889 if (IsUserContentType(contentType)) |
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1890 { |
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1891 allowed = true; |
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1892 } |
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1893 else |
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|
1894 { |
|
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|
1895 OrthancConfiguration::ReaderLock lock; |
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1896 |
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1897 if (lock.GetConfiguration().GetBooleanParameter("StoreDicom", true) && |
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1898 contentType == FileContentType_DicomAsJson) |
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1899 { |
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1900 allowed = true; |
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1901 } |
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1902 else |
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|
1903 { |
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1904 // It is forbidden to delete internal attachments, except for |
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1905 // the "DICOM as JSON" summary as of Orthanc 1.2.0 (this summary |
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1906 // would be automatically reconstructed on the next GET call) |
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1907 allowed = false; |
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1908 } |
|
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1909 } |
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1910 |
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|
1911 if (allowed) |
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1912 { |
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1913 OrthancRestApi::GetIndex(call).DeleteAttachment(publicId, contentType); |
|
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1914 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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1915 } |
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1916 else |
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1917 { |
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1918 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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1919 } |
|
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1920 } |
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1921 |
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1922 |
|
1700
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|
1923 template <enum CompressionType compression> |
|
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|
1924 static void ChangeAttachmentCompression(RestApiPostCall& call) |
|
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|
1925 { |
| 4413 | 1926 if (call.IsDocumentation()) |
| 1927 { | |
| 1928 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1929 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1930 call.GetDocumentation() | |
| 1931 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1932 .SetSummary(compression == CompressionType_None ? "Uncompress attachment" : "Compress attachment") | |
| 1933 .SetDescription("Change the compression scheme that is used to store an attachment.") | |
| 1934 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 1935 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)"); |
| 4413 | 1936 return; |
| 1937 } | |
| 1938 | |
|
1700
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|
1939 CheckValidResourceType(call); |
|
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|
1940 |
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|
1941 std::string publicId = call.GetUriComponent("id", ""); |
|
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1942 std::string name = call.GetUriComponent("name", ""); |
|
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1943 FileContentType contentType = StringToContentType(name); |
|
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1944 |
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|
1945 OrthancRestApi::GetContext(call).ChangeAttachmentCompression(publicId, contentType, compression); |
|
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|
1946 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
1700
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1947 } |
|
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|
1948 |
|
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1949 |
|
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1950 static void IsAttachmentCompressed(RestApiGetCall& call) |
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1951 { |
| 4413 | 1952 if (call.IsDocumentation()) |
| 1953 { | |
| 1954 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1955 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1956 call.GetDocumentation() | |
| 1957 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1958 .SetSummary("Is attachment compressed?") | |
| 1959 .SetDescription("Test whether the attachment has been stored as a compressed file on the disk.") | |
| 1960 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 1961 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4413 | 1962 .AddAnswerType(MimeType_PlainText, "`0` if the attachment was stored uncompressed, `1` if it was compressed"); |
| 1963 return; | |
| 1964 } | |
| 1965 | |
|
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1966 FileInfo info; |
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1967 if (GetAttachmentInfo(info, call)) |
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1968 { |
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1969 std::string answer = (info.GetCompressionType() == CompressionType_None) ? "0" : "1"; |
|
2908
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1970 call.GetOutput().AnswerBuffer(answer, MimeType_PlainText); |
|
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1971 } |
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1972 } |
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1973 |
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1974 |
| 782 | 1975 // Raw access to the DICOM tags of an instance ------------------------------ |
| 1976 | |
| 974 | 1977 static void GetRawContent(RestApiGetCall& call) |
| 782 | 1978 { |
|
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1979 if (call.IsDocumentation()) |
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1980 { |
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1981 call.GetDocumentation() |
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1982 .SetTag("Instances") |
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1983 .SetSummary("Get raw tag") |
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1984 .SetDescription("Get the raw content of one DICOM tag in the hierarchy of DICOM dataset") |
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1985 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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1986 .SetUriArgument("...", "Path to the DICOM tag. This is the interleaving of one DICOM tag, possibly followed " |
|
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1987 "by an index for sequences. Sequences are accessible as, for instance, `/0008-1140/1/0008-1150`") |
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1988 .AddAnswerType(MimeType_Binary, "The raw value of the tag of intereset " |
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1989 "(binary data, whose memory layout depends on the underlying transfer syntax), " |
|
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1990 "or JSON array containing the list of available tags if accessing a dataset"); |
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1991 return; |
|
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1992 } |
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1993 |
| 782 | 1994 std::string id = call.GetUriComponent("id", ""); |
| 1995 | |
| 1996 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); | |
| 1997 | |
| 1998 locker.GetDicom().SendPathValue(call.GetOutput(), call.GetTrailingUri()); | |
| 1999 } | |
| 2000 | |
|
751
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2001 |
|
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2002 |
|
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2003 static bool ExtractSharedTags(Json::Value& shared, |
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2004 ServerContext& context, |
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2005 const std::string& publicId) |
|
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2006 { |
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2007 // Retrieve all the instances of this patient/study/series |
|
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2008 typedef std::list<std::string> Instances; |
|
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2009 Instances instances; |
|
959
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2010 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
|
958
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2011 |
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2012 // Loop over the instances |
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2013 bool isFirst = true; |
|
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2014 shared = Json::objectValue; |
|
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2015 |
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2016 for (Instances::const_iterator it = instances.begin(); |
| 1303 | 2017 it != instances.end(); ++it) |
|
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2018 { |
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2019 // Get the tags of the current instance, in the simplified format |
|
960
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2020 Json::Value tags; |
|
959
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2021 |
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|
2022 try |
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|
2023 { |
| 2124 | 2024 context.ReadDicomAsJson(tags, *it); |
|
959
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2025 } |
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2026 catch (OrthancException&) |
|
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2027 { |
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|
2028 // Race condition: This instance has been removed since |
|
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2029 // (*). Ignore this instance. |
|
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|
2030 continue; |
|
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2031 } |
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2032 |
|
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2033 if (tags.type() != Json::objectValue) |
|
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2034 { |
|
960
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|
2035 return false; // Error |
|
958
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2036 } |
|
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2037 |
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2038 // Only keep the tags that are mapped to a string |
|
960
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2039 Json::Value::Members members = tags.getMemberNames(); |
|
958
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2040 for (size_t i = 0; i < members.size(); i++) |
|
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2041 { |
|
960
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2042 const Json::Value& tag = tags[members[i]]; |
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2043 if (tag.type() != Json::objectValue || |
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2044 tag["Type"].type() != Json::stringValue || |
|
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|
2045 tag["Type"].asString() != "String") |
|
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2046 { |
|
960
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2047 tags.removeMember(members[i]); |
|
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2048 } |
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2049 } |
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2050 |
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2051 if (isFirst) |
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2052 { |
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2053 // This is the first instance, keep its tags as such |
|
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2054 shared = tags; |
|
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2055 isFirst = false; |
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2056 } |
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2057 else |
|
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2058 { |
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2059 // Loop over all the members of the shared tags extracted so |
|
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2060 // far. If the value of one of these tags does not match its |
|
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2061 // value in the current instance, remove it. |
|
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2062 members = shared.getMemberNames(); |
|
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2063 for (size_t i = 0; i < members.size(); i++) |
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2064 { |
|
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2065 if (!tags.isMember(members[i]) || |
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2066 tags[members[i]]["Value"].asString() != shared[members[i]]["Value"].asString()) |
|
958
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2067 { |
|
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2068 shared.removeMember(members[i]); |
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2069 } |
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2070 } |
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2071 } |
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2072 } |
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2073 |
|
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2074 return true; |
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2075 } |
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2076 |
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2077 |
| 974 | 2078 static void GetSharedTags(RestApiGetCall& call) |
|
960
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2079 { |
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2080 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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2081 std::string publicId = call.GetUriComponent("id", ""); |
|
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2082 |
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diff
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|
2083 Json::Value sharedTags; |
|
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diff
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|
2084 if (ExtractSharedTags(sharedTags, context, publicId)) |
|
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diff
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|
2085 { |
|
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diff
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|
2086 // Success: Send the value of the shared tags |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
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|
2087 AnswerDicomAsJson(call, sharedTags); |
|
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2088 } |
|
958
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2089 } |
|
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diff
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|
2090 |
|
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diff
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|
2091 |
|
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|
2092 static void GetModuleInternal(RestApiGetCall& call, |
|
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|
2093 ResourceType resourceType, |
|
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2094 DicomModule module) |
|
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2095 { |
|
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|
2096 if (!((resourceType == ResourceType_Patient && module == DicomModule_Patient) || |
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2097 (resourceType == ResourceType_Study && module == DicomModule_Patient) || |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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2098 (resourceType == ResourceType_Study && module == DicomModule_Study) || |
|
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|
2099 (resourceType == ResourceType_Series && module == DicomModule_Series) || |
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2100 (resourceType == ResourceType_Instance && module == DicomModule_Instance) || |
|
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|
2101 (resourceType == ResourceType_Instance && module == DicomModule_Image))) |
|
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|
2102 { |
|
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2103 throw OrthancException(ErrorCode_NotImplemented); |
|
1701dcb6f554
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|
2104 } |
|
1701dcb6f554
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2105 |
|
963
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2106 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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2107 std::string publicId = call.GetUriComponent("id", ""); |
|
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|
2108 |
|
2409
e4045b3c9772
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diff
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|
2109 std::set<DicomTag> ignoreTagLength; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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2110 ParseSetOfTags(ignoreTagLength, call, "ignore-length"); |
|
e4045b3c9772
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Sebastien Jodogne <s.jodogne@gmail.com>
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2408
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|
2111 |
|
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|
2112 typedef std::set<DicomTag> ModuleTags; |
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|
2113 ModuleTags moduleTags; |
| 1368 | 2114 DicomTag::AddTagsForModule(moduleTags, module); |
|
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diff
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|
2115 |
|
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diff
changeset
|
2116 Json::Value tags; |
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diff
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|
2117 |
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|
2118 if (resourceType != ResourceType_Instance) |
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2119 { |
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2120 // Retrieve all the instances of this patient/study/series |
|
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|
2121 typedef std::list<std::string> Instances; |
|
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|
2122 Instances instances; |
|
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parents:
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diff
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|
2123 context.GetIndex().GetChildInstances(instances, publicId); |
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|
2124 |
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|
2125 if (instances.empty()) |
|
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2126 { |
|
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|
2127 return; // Error: No instance (should never happen) |
|
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|
2128 } |
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changeset
|
2129 |
|
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|
2130 // Select one child instance |
|
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|
2131 publicId = instances.front(); |
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|
2132 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2133 |
|
2409
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ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
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changeset
|
2134 context.ReadDicomAsJson(tags, publicId, ignoreTagLength); |
|
963
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diff
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|
2135 |
|
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|
2136 // Filter the tags of the instance according to the module |
|
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parents:
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diff
changeset
|
2137 Json::Value result = Json::objectValue; |
| 1303 | 2138 for (ModuleTags::const_iterator tag = moduleTags.begin(); tag != moduleTags.end(); ++tag) |
|
963
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parents:
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diff
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|
2139 { |
|
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|
2140 std::string s = tag->Format(); |
|
963
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diff
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|
2141 if (tags.isMember(s)) |
|
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|
2142 { |
|
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|
2143 result[s] = tags[s]; |
|
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|
2144 } |
|
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diff
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|
2145 } |
|
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parents:
960
diff
changeset
|
2146 |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
2147 AnswerDicomAsJson(call, result); |
|
1054
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changeset
|
2148 } |
|
1701dcb6f554
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parents:
974
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changeset
|
2149 |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2150 |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2151 |
|
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diff
changeset
|
2152 template <enum ResourceType resourceType, |
|
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parents:
1201
diff
changeset
|
2153 enum DicomModule module> |
|
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|
2154 static void GetModule(RestApiGetCall& call) |
|
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|
2155 { |
|
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diff
changeset
|
2156 GetModuleInternal(call, resourceType, module); |
|
963
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diff
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|
2157 } |
|
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diff
changeset
|
2158 |
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|
2159 |
| 1722 | 2160 namespace |
| 2161 { | |
| 2162 typedef std::list< std::pair<ResourceType, std::string> > LookupResults; | |
| 2163 } | |
| 2164 | |
| 2165 | |
| 2166 static void AccumulateLookupResults(LookupResults& result, | |
|
1718
2b812969e136
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|
2167 ServerIndex& index, |
|
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|
2168 const DicomTag& tag, |
|
1719
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fix Orthanc.test_lookup
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|
2169 const std::string& value, |
|
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1718
diff
changeset
|
2170 ResourceType level) |
|
1718
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|
2171 { |
|
3034
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moving LookupResource to graveyard
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diff
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|
2172 std::vector<std::string> tmp; |
|
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1727
diff
changeset
|
2173 index.LookupIdentifierExact(tmp, level, tag, value); |
|
1719
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fix Orthanc.test_lookup
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diff
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|
2174 |
|
3034
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moving LookupResource to graveyard
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|
2175 for (size_t i = 0; i < tmp.size(); i++) |
|
1719
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|
2176 { |
|
3034
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changeset
|
2177 result.push_back(std::make_pair(level, tmp[i])); |
|
1719
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|
2178 } |
|
1718
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|
2179 } |
|
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|
2180 |
|
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|
2181 |
|
1139
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|
2182 static void Lookup(RestApiPostCall& call) |
|
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|
2183 { |
|
1446
8dc80ba768aa
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changeset
|
2184 std::string tag; |
|
8dc80ba768aa
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changeset
|
2185 call.BodyToString(tag); |
|
1139
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|
2186 |
| 1722 | 2187 LookupResults resources; |
|
1718
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changeset
|
2188 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
1719
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diff
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|
2189 AccumulateLookupResults(resources, index, DICOM_TAG_PATIENT_ID, tag, ResourceType_Patient); |
|
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diff
changeset
|
2190 AccumulateLookupResults(resources, index, DICOM_TAG_STUDY_INSTANCE_UID, tag, ResourceType_Study); |
|
3b1f7e706d38
fix Orthanc.test_lookup
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diff
changeset
|
2191 AccumulateLookupResults(resources, index, DICOM_TAG_SERIES_INSTANCE_UID, tag, ResourceType_Series); |
|
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1718
diff
changeset
|
2192 AccumulateLookupResults(resources, index, DICOM_TAG_SOP_INSTANCE_UID, tag, ResourceType_Instance); |
|
1718
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changeset
|
2193 |
|
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changeset
|
2194 Json::Value result = Json::arrayValue; |
| 1722 | 2195 for (LookupResults::const_iterator |
|
1718
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changeset
|
2196 it = resources.begin(); it != resources.end(); ++it) |
|
1139
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|
2197 { |
|
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diff
changeset
|
2198 ResourceType type = it->first; |
|
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2199 const std::string& id = it->second; |
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2200 |
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2201 Json::Value item = Json::objectValue; |
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2202 item["Type"] = EnumerationToString(type); |
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2203 item["ID"] = id; |
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2204 item["Path"] = GetBasePath(type, id); |
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2205 |
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2206 result.append(item); |
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2207 } |
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2208 |
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2209 call.GetOutput().AnswerJson(result); |
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2210 } |
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2211 |
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2212 |
|
3001
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2213 namespace |
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2214 { |
|
3021
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2215 class FindVisitor : public ServerContext::ILookupVisitor |
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2216 { |
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2217 private: |
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2218 bool isComplete_; |
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2219 std::list<std::string> resources_; |
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2220 |
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2221 public: |
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2222 FindVisitor() : |
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2223 isComplete_(false) |
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2224 { |
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2225 } |
| 4205 | 2226 |
| 2227 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
|
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2228 { |
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2229 return false; // (*) |
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2230 } |
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2231 |
| 4205 | 2232 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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2233 { |
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2234 isComplete_ = true; // Unused information as of Orthanc 1.5.0 |
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2235 } |
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2236 |
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2237 virtual void Visit(const std::string& publicId, |
|
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2238 const std::string& instanceId /* unused */, |
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2239 const DicomMap& mainDicomTags /* unused */, |
| 4205 | 2240 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE |
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2241 { |
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2242 resources_.push_back(publicId); |
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2243 } |
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2244 |
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2245 void Answer(RestApiOutput& output, |
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2246 ServerIndex& index, |
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2247 ResourceType level, |
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2248 bool expand) const |
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2249 { |
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2250 AnswerListOfResources(output, index, resources_, level, expand); |
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2251 } |
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2252 }; |
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2253 } |
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2254 |
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2255 |
| 1354 | 2256 static void Find(RestApiPostCall& call) |
| 2257 { | |
| 2998 | 2258 static const char* const KEY_CASE_SENSITIVE = "CaseSensitive"; |
| 2259 static const char* const KEY_EXPAND = "Expand"; | |
| 2260 static const char* const KEY_LEVEL = "Level"; | |
| 2261 static const char* const KEY_LIMIT = "Limit"; | |
| 2262 static const char* const KEY_QUERY = "Query"; | |
| 2263 static const char* const KEY_SINCE = "Since"; | |
| 2264 | |
| 1358 | 2265 ServerContext& context = OrthancRestApi::GetContext(call); |
| 1354 | 2266 |
| 2267 Json::Value request; | |
|
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2268 if (!call.ParseJsonRequest(request) || |
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2269 request.type() != Json::objectValue) |
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2270 { |
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2271 throw OrthancException(ErrorCode_BadRequest, |
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2272 "The body must contain a JSON object"); |
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2273 } |
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2274 else if (!request.isMember(KEY_LEVEL) || |
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2275 request[KEY_LEVEL].type() != Json::stringValue) |
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2276 { |
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2277 throw OrthancException(ErrorCode_BadRequest, |
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2278 "Field \"" + std::string(KEY_LEVEL) + "\" is missing, or should be a string"); |
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2279 } |
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2280 else if (!request.isMember(KEY_QUERY) && |
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2281 request[KEY_QUERY].type() != Json::objectValue) |
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2282 { |
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2283 throw OrthancException(ErrorCode_BadRequest, |
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2284 "Field \"" + std::string(KEY_QUERY) + "\" is missing, or should be a JSON object"); |
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2285 } |
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2286 else if (request.isMember(KEY_CASE_SENSITIVE) && |
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2287 request[KEY_CASE_SENSITIVE].type() != Json::booleanValue) |
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2288 { |
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2289 throw OrthancException(ErrorCode_BadRequest, |
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2290 "Field \"" + std::string(KEY_CASE_SENSITIVE) + "\" should be a Boolean"); |
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2291 } |
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2292 else if (request.isMember(KEY_LIMIT) && |
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2293 request[KEY_LIMIT].type() != Json::intValue) |
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2294 { |
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2295 throw OrthancException(ErrorCode_BadRequest, |
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2296 "Field \"" + std::string(KEY_LIMIT) + "\" should be an integer"); |
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2297 } |
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2298 else if (request.isMember(KEY_SINCE) && |
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2299 request[KEY_SINCE].type() != Json::intValue) |
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2300 { |
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2301 throw OrthancException(ErrorCode_BadRequest, |
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2302 "Field \"" + std::string(KEY_SINCE) + "\" should be an integer"); |
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2303 } |
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2304 else |
| 1354 | 2305 { |
| 2306 bool expand = false; | |
| 2998 | 2307 if (request.isMember(KEY_EXPAND)) |
| 1354 | 2308 { |
| 2998 | 2309 expand = request[KEY_EXPAND].asBool(); |
| 1354 | 2310 } |
| 2311 | |
|
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|
2312 bool caseSensitive = false; |
| 2998 | 2313 if (request.isMember(KEY_CASE_SENSITIVE)) |
|
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2314 { |
| 2998 | 2315 caseSensitive = request[KEY_CASE_SENSITIVE].asBool(); |
|
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2316 } |
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2317 |
| 1758 | 2318 size_t limit = 0; |
| 2998 | 2319 if (request.isMember(KEY_LIMIT)) |
| 1758 | 2320 { |
| 2998 | 2321 int tmp = request[KEY_LIMIT].asInt(); |
| 1847 | 2322 if (tmp < 0) |
| 1758 | 2323 { |
|
3001
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refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2324 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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refactoring /tools/find using LookupResource::IVisitor
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2998
diff
changeset
|
2325 "Field \"" + std::string(KEY_LIMIT) + "\" should be a positive integer"); |
| 1758 | 2326 } |
| 1847 | 2327 |
| 2328 limit = static_cast<size_t>(tmp); | |
| 1758 | 2329 } |
| 2330 | |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
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|
2331 size_t since = 0; |
| 2998 | 2332 if (request.isMember(KEY_SINCE)) |
|
2304
563bf878407a
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Sebastien Jodogne <s.jodogne@gmail.com>
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2281
diff
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|
2333 { |
| 2998 | 2334 int tmp = request[KEY_SINCE].asInt(); |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
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diff
changeset
|
2335 if (tmp < 0) |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2336 { |
|
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refactoring /tools/find using LookupResource::IVisitor
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parents:
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diff
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|
2337 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2338 "Field \"" + std::string(KEY_SINCE) + "\" should be a positive integer"); |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
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|
2339 } |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2340 |
|
563bf878407a
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Sebastien Jodogne <s.jodogne@gmail.com>
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2281
diff
changeset
|
2341 since = static_cast<size_t>(tmp); |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2342 } |
|
563bf878407a
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Sebastien Jodogne <s.jodogne@gmail.com>
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2281
diff
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|
2343 |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2344 ResourceType level = StringToResourceType(request[KEY_LEVEL].asCString()); |
| 1360 | 2345 |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2346 DatabaseLookup query; |
| 1358 | 2347 |
| 2998 | 2348 Json::Value::Members members = request[KEY_QUERY].getMemberNames(); |
| 1354 | 2349 for (size_t i = 0; i < members.size(); i++) |
| 2350 { | |
| 2998 | 2351 if (request[KEY_QUERY][members[i]].type() != Json::stringValue) |
| 1354 | 2352 { |
|
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|
2353 throw OrthancException(ErrorCode_BadRequest, |
|
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diff
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|
2354 "Tag \"" + members[i] + "\" should be associated with a string"); |
| 1354 | 2355 } |
| 2356 | |
|
3163
cf91b6f22278
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2357 const std::string value = request[KEY_QUERY][members[i]].asString(); |
|
cf91b6f22278
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2358 |
|
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diff
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|
2359 if (!value.empty()) |
|
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changeset
|
2360 { |
|
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changeset
|
2361 // An empty string corresponds to an universal constraint, |
|
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changeset
|
2362 // so we ignore it. This mimics the behavior of class |
|
cf91b6f22278
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|
2363 // "OrthancFindRequestHandler" |
|
cf91b6f22278
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2364 query.AddRestConstraint(FromDcmtkBridge::ParseTag(members[i]), |
|
cf91b6f22278
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2365 value, caseSensitive, true); |
|
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|
2366 } |
|
1361
94ffb597d297
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1360
diff
changeset
|
2367 } |
| 2876 | 2368 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2369 FindVisitor visitor; |
|
3033
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2370 context.Apply(visitor, query, level, since, limit); |
|
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2371 visitor.Answer(call.GetOutput(), context.GetIndex(), level, expand); |
| 1354 | 2372 } |
| 2373 } | |
| 2374 | |
| 2375 | |
|
1140
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|
2376 template <enum ResourceType start, |
|
94c5f6623b3a
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|
2377 enum ResourceType end> |
|
94c5f6623b3a
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|
2378 static void GetChildResources(RestApiGetCall& call) |
|
94c5f6623b3a
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|
2379 { |
|
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|
2380 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
94c5f6623b3a
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|
2381 |
|
94c5f6623b3a
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diff
changeset
|
2382 std::list<std::string> a, b, c; |
|
94c5f6623b3a
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|
2383 a.push_back(call.GetUriComponent("id", "")); |
|
94c5f6623b3a
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diff
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|
2384 |
|
94c5f6623b3a
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|
2385 ResourceType type = start; |
|
94c5f6623b3a
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|
2386 while (type != end) |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2387 { |
|
94c5f6623b3a
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|
2388 b.clear(); |
|
94c5f6623b3a
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diff
changeset
|
2389 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2390 for (std::list<std::string>::const_iterator |
| 1303 | 2391 it = a.begin(); it != a.end(); ++it) |
|
1140
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|
2392 { |
|
94c5f6623b3a
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|
2393 index.GetChildren(c, *it); |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2394 b.splice(b.begin(), c); |
|
94c5f6623b3a
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|
2395 } |
|
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|
2396 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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1509
diff
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|
2397 type = GetChildResourceType(type); |
|
1140
94c5f6623b3a
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diff
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|
2398 |
|
94c5f6623b3a
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|
2399 a.clear(); |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2400 a.splice(a.begin(), b); |
|
94c5f6623b3a
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diff
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|
2401 } |
|
94c5f6623b3a
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diff
changeset
|
2402 |
|
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diff
changeset
|
2403 Json::Value result = Json::arrayValue; |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2404 |
|
94c5f6623b3a
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diff
changeset
|
2405 for (std::list<std::string>::const_iterator |
| 1303 | 2406 it = a.begin(); it != a.end(); ++it) |
|
1140
94c5f6623b3a
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|
2407 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2408 Json::Value item; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2409 |
|
94c5f6623b3a
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diff
changeset
|
2410 if (OrthancRestApi::GetIndex(call).LookupResource(item, *it, end)) |
|
94c5f6623b3a
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diff
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|
2411 { |
|
94c5f6623b3a
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parents:
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diff
changeset
|
2412 result.append(item); |
|
94c5f6623b3a
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parents:
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diff
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|
2413 } |
|
94c5f6623b3a
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diff
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|
2414 } |
|
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|
2415 |
|
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|
2416 call.GetOutput().AnswerJson(result); |
|
94c5f6623b3a
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2417 } |
|
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2418 |
|
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|
2419 |
|
1166
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bulk tags retrieval
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|
2420 static void GetChildInstancesTags(RestApiGetCall& call) |
|
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|
2421 { |
|
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|
2422 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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|
2423 std::string publicId = call.GetUriComponent("id", ""); |
|
2622
3603a2e14592
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Sebastien Jodogne <s.jodogne@gmail.com>
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2447
diff
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|
2424 DicomToJsonFormat format = GetDicomFormat(call); |
|
1166
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|
2425 |
|
2409
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2408
diff
changeset
|
2426 std::set<DicomTag> ignoreTagLength; |
|
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diff
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|
2427 ParseSetOfTags(ignoreTagLength, call, "ignore-length"); |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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diff
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|
2428 |
|
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|
2429 // Retrieve all the instances of this patient/study/series |
|
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2430 typedef std::list<std::string> Instances; |
|
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|
2431 Instances instances; |
|
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|
2432 |
|
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|
2433 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
|
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|
2434 |
|
1201
09aa7c126be9
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1172
diff
changeset
|
2435 Json::Value result = Json::objectValue; |
|
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|
2436 |
|
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|
2437 for (Instances::const_iterator it = instances.begin(); |
| 1303 | 2438 it != instances.end(); ++it) |
|
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2439 { |
|
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|
2440 Json::Value full; |
|
2409
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diff
changeset
|
2441 context.ReadDicomAsJson(full, *it, ignoreTagLength); |
|
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|
2442 |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
2443 if (format != DicomToJsonFormat_Full) |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2444 { |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2445 Json::Value simplified; |
|
4055
9214e3a7b0a2
moving FromDcmtkTests.cpp from OrthancServer to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4045
diff
changeset
|
2446 Toolbox::SimplifyDicomAsJson(simplified, full, format); |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1172
diff
changeset
|
2447 result[*it] = simplified; |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2448 } |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2449 else |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2450 { |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1172
diff
changeset
|
2451 result[*it] = full; |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2452 } |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2453 } |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2454 |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2455 call.GetOutput().AnswerJson(result); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2456 } |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2457 |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2458 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2459 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2460 template <enum ResourceType start, |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2461 enum ResourceType end> |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2462 static void GetParentResource(RestApiGetCall& call) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2463 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2464 assert(start > end); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2465 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2466 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2467 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2468 std::string current = call.GetUriComponent("id", ""); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2469 ResourceType currentType = start; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2470 while (currentType > end) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2471 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2472 std::string parent; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2473 if (!index.LookupParent(parent, current)) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2474 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2475 // Error that could happen if the resource gets deleted by |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2476 // another concurrent call |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2477 return; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2478 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2479 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2480 current = parent; |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2481 currentType = GetParentResourceType(currentType); |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2482 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2483 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2484 assert(currentType == end); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2485 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2486 Json::Value result; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2487 if (index.LookupResource(result, current, end)) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2488 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2489 call.GetOutput().AnswerJson(result); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2490 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2491 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2492 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2493 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2494 static void ExtractPdf(RestApiGetCall& call) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2495 { |
| 4407 | 2496 if (call.IsDocumentation()) |
| 2497 { | |
| 2498 call.GetDocumentation() | |
| 2499 .SetTag("Instances") | |
| 2500 .SetSummary("Get embedded PDF") | |
| 2501 .SetDescription("Get the PDF file that is embedded in one DICOM instance. " | |
| 2502 "If the DICOM instance doesn't contain the `EncapsulatedDocument` tag or if the " | |
| 2503 "`MIMETypeOfEncapsulatedDocument` tag doesn't correspond to the PDF type, a `404` HTTP error is raised.") | |
| 2504 .SetUriArgument("id", "Orthanc identifier of the instance interest") | |
| 2505 .AddAnswerType(MimeType_Pdf, "PDF file"); | |
| 2506 return; | |
| 2507 } | |
| 2508 | |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2509 const std::string id = call.GetUriComponent("id", ""); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2510 std::string pdf; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2511 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2512 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2513 if (locker.GetDicom().ExtractPdf(pdf)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2514 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2515 call.GetOutput().AnswerBuffer(pdf, MimeType_Pdf); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2516 return; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2517 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2518 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2519 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2520 |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2521 static void OrderSlices(RestApiGetCall& call) |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2522 { |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2523 const std::string id = call.GetUriComponent("id", ""); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2524 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2525 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2526 SliceOrdering ordering(index, id); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2527 |
|
1703
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
2528 Json::Value result; |
|
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
2529 ordering.Format(result); |
|
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
2530 call.GetOutput().AnswerJson(result); |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2531 } |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2532 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2533 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2534 static void GetInstanceHeader(RestApiGetCall& call) |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2535 { |
| 4404 | 2536 if (call.IsDocumentation()) |
| 2537 { | |
| 2538 call.GetDocumentation() | |
| 2539 .SetTag("Instances") | |
| 2540 .SetSummary("Get DICOM meta-header") | |
| 2541 .SetDescription("Get the DICOM tags in the meta-header of the DICOM instance. By default, the `full` format is used, which " | |
| 2542 "combines hexadecimal tags with human-readable description.") | |
| 2543 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 2544 .SetHttpGetArgument("simplify", RestApiCallDocumentation::Type_String, | |
| 2545 "If present, report the DICOM tags in human-readable format", false) | |
| 2546 .SetHttpGetArgument("short", RestApiCallDocumentation::Type_String, | |
| 2547 "If present, report the DICOM tags indexed in hexadecimal format", false) | |
| 2548 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") | |
| 2549 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/header", true); | |
| 2550 return; | |
| 2551 } | |
| 2552 | |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2553 ServerContext& context = OrthancRestApi::GetContext(call); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2554 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2555 std::string publicId = call.GetUriComponent("id", ""); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2556 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2557 std::string dicomContent; |
| 2124 | 2558 context.ReadDicom(dicomContent, publicId); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2559 |
|
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
2560 // TODO Consider using "DicomMap::ParseDicomMetaInformation()" to |
|
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
2561 // speed up things here |
|
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
2562 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2563 ParsedDicomFile dicom(dicomContent); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2564 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2565 Json::Value header; |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
2566 OrthancConfiguration::DefaultDicomHeaderToJson(header, dicom); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2567 |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
2568 AnswerDicomAsJson(call, header); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2569 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2570 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2571 |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2572 static void InvalidateTags(RestApiPostCall& call) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2573 { |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2574 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2575 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2576 // Loop over the instances, grouping them by parent studies so as |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2577 // to avoid large memory consumption |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2578 std::list<std::string> studies; |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2579 index.GetAllUuids(studies, ResourceType_Study); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2580 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2581 for (std::list<std::string>::const_iterator |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2582 study = studies.begin(); study != studies.end(); ++study) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2583 { |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2584 std::list<std::string> instances; |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2585 index.GetChildInstances(instances, *study); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2586 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2587 for (std::list<std::string>::const_iterator |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2588 instance = instances.begin(); instance != instances.end(); ++instance) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2589 { |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2590 index.DeleteAttachment(*instance, FileContentType_DicomAsJson); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2591 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2592 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2593 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2594 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2595 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2596 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2597 |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2598 template <enum ResourceType type> |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2599 static void ReconstructResource(RestApiPostCall& call) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2600 { |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2601 ServerContext& context = OrthancRestApi::GetContext(call); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2602 ServerToolbox::ReconstructResource(context, call.GetUriComponent("id", "")); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2603 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2604 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2605 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2606 |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2607 static void ReconstructAllResources(RestApiPostCall& call) |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2608 { |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2609 ServerContext& context = OrthancRestApi::GetContext(call); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2610 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2611 std::list<std::string> studies; |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2612 context.GetIndex().GetAllUuids(studies, ResourceType_Study); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2613 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2614 for (std::list<std::string>::const_iterator |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2615 study = studies.begin(); study != studies.end(); ++study) |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2616 { |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2617 ServerToolbox::ReconstructResource(context, *study); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2618 } |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2619 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2620 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2621 } |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2622 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2623 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2624 void OrthancRestApi::RegisterResources() |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2625 { |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2626 Register("/instances", ListResources<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2627 Register("/patients", ListResources<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2628 Register("/series", ListResources<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2629 Register("/studies", ListResources<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2630 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2631 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2632 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2633 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2634 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2635 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2636 Register("/series/{id}", GetSingleResource<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2637 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2638 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2639 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2640 Register("/instances/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2641 Register("/patients/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2642 Register("/studies/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2643 Register("/series/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2644 |
|
964
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2645 Register("/patients/{id}/shared-tags", GetSharedTags); |
|
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2646 Register("/series/{id}/shared-tags", GetSharedTags); |
|
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2647 Register("/studies/{id}/shared-tags", GetSharedTags); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2648 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2649 Register("/instances/{id}/module", GetModule<ResourceType_Instance, DicomModule_Instance>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2650 Register("/patients/{id}/module", GetModule<ResourceType_Patient, DicomModule_Patient>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2651 Register("/series/{id}/module", GetModule<ResourceType_Series, DicomModule_Series>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2652 Register("/studies/{id}/module", GetModule<ResourceType_Study, DicomModule_Study>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2653 Register("/studies/{id}/module-patient", GetModule<ResourceType_Study, DicomModule_Patient>); |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2654 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2655 Register("/instances/{id}/file", GetInstanceFile); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2656 Register("/instances/{id}/export", ExportInstanceFile); |
|
964
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2657 Register("/instances/{id}/tags", GetInstanceTagsBis); |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
2658 Register("/instances/{id}/simplified-tags", GetInstanceTags<DicomToJsonFormat_Human>); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2659 Register("/instances/{id}/frames", ListFrames); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2660 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2661 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
2662 Register("/instances/{id}/frames/{frame}/rendered", GetRenderedFrame); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2663 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2664 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2665 Register("/instances/{id}/frames/{frame}/image-int16", GetImage<ImageExtractionMode_Int16>); |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2666 Register("/instances/{id}/frames/{frame}/matlab", GetMatlabImage); |
|
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
2667 Register("/instances/{id}/frames/{frame}/raw", GetRawFrame<false>); |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
2668 Register("/instances/{id}/frames/{frame}/raw.gz", GetRawFrame<true>); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2669 Register("/instances/{id}/pdf", ExtractPdf); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2670 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
2671 Register("/instances/{id}/rendered", GetRenderedFrame); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2672 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2673 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2674 Register("/instances/{id}/image-int16", GetImage<ImageExtractionMode_Int16>); |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2675 Register("/instances/{id}/matlab", GetMatlabImage); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2676 Register("/instances/{id}/header", GetInstanceHeader); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2677 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2678 Register("/patients/{id}/protected", IsProtectedPatient); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2679 Register("/patients/{id}/protected", SetPatientProtection); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2680 |
| 4409 | 2681 std::vector<std::string> resourceTypes; |
| 2682 resourceTypes.push_back("patients"); | |
| 2683 resourceTypes.push_back("studies"); | |
| 2684 resourceTypes.push_back("series"); | |
| 2685 resourceTypes.push_back("instances"); | |
| 2686 | |
| 2687 for (size_t i = 0; i < resourceTypes.size(); i++) | |
| 2688 { | |
| 2689 Register("/" + resourceTypes[i] + "/{id}/metadata", ListMetadata); | |
| 2690 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", DeleteMetadata); | |
| 2691 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", GetMetadata); | |
| 2692 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", SetMetadata); | |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2693 |
| 4409 | 2694 Register("/" + resourceTypes[i] + "/{id}/attachments", ListAttachments); |
| 2695 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", DeleteAttachment); | |
| 2696 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", GetAttachmentOperations); | |
| 2697 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", UploadAttachment); | |
| 2698 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compress", ChangeAttachmentCompression<CompressionType_ZlibWithSize>); | |
| 2699 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-data", GetAttachmentData<0>); | |
| 2700 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-md5", GetAttachmentCompressedMD5); | |
| 2701 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-size", GetAttachmentCompressedSize); | |
| 2702 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/data", GetAttachmentData<1>); | |
| 2703 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/is-compressed", IsAttachmentCompressed); | |
| 2704 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/md5", GetAttachmentMD5); | |
| 2705 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/size", GetAttachmentSize); | |
| 2706 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/uncompress", ChangeAttachmentCompression<CompressionType_None>); | |
| 2707 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/verify-md5", VerifyAttachment); | |
| 2708 } | |
| 782 | 2709 |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2710 Register("/tools/invalidate-tags", InvalidateTags); |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
2711 Register("/tools/lookup", Lookup); |
| 1354 | 2712 Register("/tools/find", Find); |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
2713 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2714 Register("/patients/{id}/studies", GetChildResources<ResourceType_Patient, ResourceType_Study>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2715 Register("/patients/{id}/series", GetChildResources<ResourceType_Patient, ResourceType_Series>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2716 Register("/patients/{id}/instances", GetChildResources<ResourceType_Patient, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2717 Register("/studies/{id}/series", GetChildResources<ResourceType_Study, ResourceType_Series>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2718 Register("/studies/{id}/instances", GetChildResources<ResourceType_Study, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2719 Register("/series/{id}/instances", GetChildResources<ResourceType_Series, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2720 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2721 Register("/studies/{id}/patient", GetParentResource<ResourceType_Study, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2722 Register("/series/{id}/patient", GetParentResource<ResourceType_Series, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2723 Register("/series/{id}/study", GetParentResource<ResourceType_Series, ResourceType_Study>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2724 Register("/instances/{id}/patient", GetParentResource<ResourceType_Instance, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2725 Register("/instances/{id}/study", GetParentResource<ResourceType_Instance, ResourceType_Study>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2726 Register("/instances/{id}/series", GetParentResource<ResourceType_Instance, ResourceType_Series>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2727 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2728 Register("/patients/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2729 Register("/studies/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2730 Register("/series/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2731 |
| 782 | 2732 Register("/instances/{id}/content/*", GetRawContent); |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2733 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2734 Register("/series/{id}/ordered-slices", OrderSlices); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2735 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2736 Register("/patients/{id}/reconstruct", ReconstructResource<ResourceType_Patient>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2737 Register("/studies/{id}/reconstruct", ReconstructResource<ResourceType_Study>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2738 Register("/series/{id}/reconstruct", ReconstructResource<ResourceType_Series>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2739 Register("/instances/{id}/reconstruct", ReconstructResource<ResourceType_Instance>); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2740 Register("/tools/reconstruct", ReconstructAllResources); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2741 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2742 } |