Mercurial > hg > orthanc
annotate OrthancServer/Database/Compatibility/DatabaseLookup.cpp @ 3499:d8f7c3970e25
more tolerance in ImageProcessing::Set()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 23 Aug 2019 17:31:43 +0200 |
parents | 61da3c9b4121 |
children | 94f4a18a79cc |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../../PrecompiledHeadersServer.h" |
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35 #include "DatabaseLookup.h" |
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36 |
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37 #include "../../../Core/OrthancException.h" |
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38 #include "../../Search/DicomTagConstraint.h" |
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39 #include "../../ServerToolbox.h" |
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40 #include "SetOfResources.h" |
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41 |
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42 namespace Orthanc |
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43 { |
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44 namespace Compatibility |
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45 { |
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46 namespace |
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47 { |
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48 // Anonymous namespace to avoid clashes between compiler modules |
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49 class MainTagsConstraints : boost::noncopyable |
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50 { |
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51 private: |
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52 std::vector<DicomTagConstraint*> constraints_; |
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53 |
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54 public: |
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55 ~MainTagsConstraints() |
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56 { |
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57 for (size_t i = 0; i < constraints_.size(); i++) |
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58 { |
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59 assert(constraints_[i] != NULL); |
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60 delete constraints_[i]; |
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61 } |
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62 } |
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63 |
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64 void Reserve(size_t n) |
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65 { |
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66 constraints_.reserve(n); |
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67 } |
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68 |
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69 size_t GetSize() const |
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70 { |
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71 return constraints_.size(); |
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72 } |
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73 |
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74 DicomTagConstraint& GetConstraint(size_t i) const |
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75 { |
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76 if (i >= constraints_.size()) |
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77 { |
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78 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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79 } |
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80 else |
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81 { |
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82 assert(constraints_[i] != NULL); |
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83 return *constraints_[i]; |
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84 } |
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85 } |
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86 |
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87 void Add(const DatabaseConstraint& constraint) |
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88 { |
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89 constraints_.push_back(new DicomTagConstraint(constraint)); |
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90 } |
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91 }; |
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92 } |
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93 |
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94 |
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95 static void ApplyIdentifierConstraint(SetOfResources& candidates, |
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97 const DatabaseConstraint& constraint, |
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98 ResourceType level) |
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99 { |
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100 std::list<int64_t> matches; |
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101 |
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102 switch (constraint.GetConstraintType()) |
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103 { |
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104 case ConstraintType_Equal: |
3084 | 105 compatibility.LookupIdentifier(matches, level, constraint.GetTag(), |
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106 IdentifierConstraintType_Equal, constraint.GetSingleValue()); |
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107 break; |
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108 |
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109 case ConstraintType_SmallerOrEqual: |
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111 IdentifierConstraintType_SmallerOrEqual, constraint.GetSingleValue()); |
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112 break; |
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113 |
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114 case ConstraintType_GreaterOrEqual: |
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116 IdentifierConstraintType_GreaterOrEqual, constraint.GetSingleValue()); |
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117 |
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118 break; |
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119 |
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120 case ConstraintType_Wildcard: |
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122 IdentifierConstraintType_Wildcard, constraint.GetSingleValue()); |
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123 |
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124 break; |
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125 |
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126 case ConstraintType_List: |
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127 for (size_t i = 0; i < constraint.GetValuesCount(); i++) |
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128 { |
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129 std::list<int64_t> tmp; |
3084 | 130 compatibility.LookupIdentifier(tmp, level, constraint.GetTag(), |
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131 IdentifierConstraintType_Wildcard, constraint.GetValue(i)); |
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132 matches.splice(matches.end(), tmp); |
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133 } |
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134 |
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135 break; |
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136 |
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137 default: |
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138 throw OrthancException(ErrorCode_InternalError); |
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139 } |
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140 |
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141 candidates.Intersect(matches); |
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142 } |
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143 |
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144 |
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145 static void ApplyIdentifierRange(SetOfResources& candidates, |
3085 | 146 ILookupResources& compatibility, |
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147 const DatabaseConstraint& smaller, |
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148 const DatabaseConstraint& greater, |
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149 ResourceType level) |
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150 { |
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151 assert(smaller.GetConstraintType() == ConstraintType_SmallerOrEqual && |
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152 greater.GetConstraintType() == ConstraintType_GreaterOrEqual && |
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153 smaller.GetTag() == greater.GetTag() && |
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154 ServerToolbox::IsIdentifier(smaller.GetTag(), level)); |
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155 |
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156 std::list<int64_t> matches; |
3084 | 157 compatibility.LookupIdentifierRange(matches, level, smaller.GetTag(), |
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158 greater.GetSingleValue(), smaller.GetSingleValue()); |
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159 candidates.Intersect(matches); |
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160 } |
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161 |
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162 |
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163 static void ApplyLevel(SetOfResources& candidates, |
3084 | 164 IDatabaseWrapper& database, |
3085 | 165 ILookupResources& compatibility, |
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166 const std::vector<DatabaseConstraint>& lookup, |
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167 ResourceType level) |
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168 { |
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169 typedef std::set<const DatabaseConstraint*> SetOfConstraints; |
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170 typedef std::map<DicomTag, SetOfConstraints> Identifiers; |
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171 |
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172 // (1) Select which constraints apply to this level, and split |
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173 // them between "identifier tags" constraints and "main DICOM |
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174 // tags" constraints |
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175 |
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176 Identifiers identifiers; |
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177 SetOfConstraints mainTags; |
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178 |
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179 for (size_t i = 0; i < lookup.size(); i++) |
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180 { |
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181 if (lookup[i].GetLevel() == level) |
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182 { |
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183 if (lookup[i].IsIdentifier()) |
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184 { |
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185 identifiers[lookup[i].GetTag()].insert(&lookup[i]); |
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186 } |
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187 else |
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188 { |
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189 mainTags.insert(&lookup[i]); |
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190 } |
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191 } |
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192 } |
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193 |
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194 |
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195 // (2) Apply the constraints over the identifiers |
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196 |
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197 for (Identifiers::const_iterator it = identifiers.begin(); |
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198 it != identifiers.end(); ++it) |
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199 { |
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200 // Check whether some range constraint over identifiers is |
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201 // present at this level |
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202 const DatabaseConstraint* smaller = NULL; |
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203 const DatabaseConstraint* greater = NULL; |
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204 |
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205 for (SetOfConstraints::const_iterator it2 = it->second.begin(); |
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206 it2 != it->second.end(); ++it2) |
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207 { |
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208 assert(*it2 != NULL); |
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209 |
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210 if ((*it2)->GetConstraintType() == ConstraintType_SmallerOrEqual) |
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211 { |
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212 smaller = *it2; |
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213 } |
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214 |
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215 if ((*it2)->GetConstraintType() == ConstraintType_GreaterOrEqual) |
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216 { |
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217 greater = *it2; |
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218 } |
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219 } |
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220 |
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221 if (smaller != NULL && |
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222 greater != NULL) |
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223 { |
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224 // There is a range constraint: Apply it, as it is more efficient |
3084 | 225 ApplyIdentifierRange(candidates, compatibility, *smaller, *greater, level); |
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226 } |
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227 else |
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228 { |
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229 smaller = NULL; |
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230 greater = NULL; |
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231 } |
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232 |
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233 for (SetOfConstraints::const_iterator it2 = it->second.begin(); |
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234 it2 != it->second.end(); ++it2) |
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235 { |
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236 // Check to avoid applying twice the range constraint |
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237 if (*it2 != smaller && |
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238 *it2 != greater) |
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239 { |
3084 | 240 ApplyIdentifierConstraint(candidates, compatibility, **it2, level); |
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241 } |
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242 } |
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243 } |
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244 |
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245 |
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246 // (3) Apply the constraints over the main DICOM tags (no index |
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247 // here, so this is less efficient than filtering over the |
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248 // identifiers) |
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249 if (!mainTags.empty()) |
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250 { |
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251 MainTagsConstraints c; |
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252 c.Reserve(mainTags.size()); |
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253 |
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254 for (SetOfConstraints::const_iterator it = mainTags.begin(); |
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255 it != mainTags.end(); ++it) |
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256 { |
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257 assert(*it != NULL); |
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258 c.Add(**it); |
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259 } |
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260 |
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261 std::list<int64_t> source; |
3084 | 262 candidates.Flatten(compatibility, source); |
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263 candidates.Clear(); |
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264 |
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265 std::list<int64_t> filtered; |
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266 for (std::list<int64_t>::const_iterator candidate = source.begin(); |
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267 candidate != source.end(); ++candidate) |
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268 { |
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269 DicomMap tags; |
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270 database.GetMainDicomTags(tags, *candidate); |
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271 |
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272 bool match = true; |
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273 |
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274 for (size_t i = 0; i < c.GetSize(); i++) |
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275 { |
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276 if (!c.GetConstraint(i).IsMatch(tags)) |
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277 { |
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278 match = false; |
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279 break; |
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280 } |
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281 } |
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282 |
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283 if (match) |
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284 { |
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285 filtered.push_back(*candidate); |
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286 } |
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287 } |
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288 |
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289 candidates.Intersect(filtered); |
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290 } |
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291 } |
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292 |
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293 |
3084 | 294 static std::string GetOneInstance(IDatabaseWrapper& compatibility, |
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295 int64_t resource, |
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296 ResourceType level) |
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297 { |
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298 for (int i = level; i < ResourceType_Instance; i++) |
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299 { |
3084 | 300 assert(compatibility.GetResourceType(resource) == static_cast<ResourceType>(i)); |
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301 |
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302 std::list<int64_t> children; |
3084 | 303 compatibility.GetChildrenInternalId(children, resource); |
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304 |
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305 if (children.empty()) |
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306 { |
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307 throw OrthancException(ErrorCode_Database); |
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308 } |
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309 |
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310 resource = children.front(); |
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311 } |
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312 |
3084 | 313 return compatibility.GetPublicId(resource); |
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314 } |
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315 |
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316 |
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317 void DatabaseLookup::ApplyLookupResources(std::list<std::string>& resourcesId, |
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318 std::list<std::string>* instancesId, |
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319 const std::vector<DatabaseConstraint>& lookup, |
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320 ResourceType queryLevel, |
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321 size_t limit) |
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322 { |
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323 // This is a re-implementation of |
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324 // "../../../Resources/Graveyard/DatabaseOptimizations/LookupResource.cpp" |
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325 |
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326 assert(ResourceType_Patient < ResourceType_Study && |
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327 ResourceType_Study < ResourceType_Series && |
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328 ResourceType_Series < ResourceType_Instance); |
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329 |
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330 ResourceType upperLevel = queryLevel; |
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331 ResourceType lowerLevel = queryLevel; |
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332 |
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333 for (size_t i = 0; i < lookup.size(); i++) |
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334 { |
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335 ResourceType level = lookup[i].GetLevel(); |
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336 |
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337 if (level < upperLevel) |
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338 { |
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339 upperLevel = level; |
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340 } |
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341 |
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342 if (level > lowerLevel) |
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343 { |
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344 lowerLevel = level; |
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345 } |
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346 } |
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347 |
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348 assert(upperLevel <= queryLevel && |
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349 queryLevel <= lowerLevel); |
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350 |
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351 SetOfResources candidates(database_, upperLevel); |
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352 |
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353 for (int level = upperLevel; level <= lowerLevel; level++) |
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354 { |
3084 | 355 ApplyLevel(candidates, database_, compatibility_, lookup, static_cast<ResourceType>(level)); |
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356 |
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357 if (level != lowerLevel) |
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358 { |
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359 candidates.GoDown(); |
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360 } |
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361 } |
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362 |
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363 std::list<int64_t> resources; |
3084 | 364 candidates.Flatten(compatibility_, resources); |
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365 |
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366 // Climb up, up to queryLevel |
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367 |
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368 for (int level = lowerLevel; level > queryLevel; level--) |
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369 { |
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370 std::list<int64_t> parents; |
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371 for (std::list<int64_t>::const_iterator |
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372 it = resources.begin(); it != resources.end(); ++it) |
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373 { |
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374 int64_t parent; |
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375 if (database_.LookupParent(parent, *it)) |
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376 { |
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377 parents.push_back(parent); |
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378 } |
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379 } |
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380 |
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381 resources.swap(parents); |
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382 } |
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383 |
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384 // Apply the limit, if given |
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385 |
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386 if (limit != 0 && |
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387 resources.size() > limit) |
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388 { |
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389 resources.resize(limit); |
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390 } |
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391 |
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392 // Get the public ID of all the selected resources |
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393 |
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394 size_t pos = 0; |
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395 |
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396 for (std::list<int64_t>::const_iterator |
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397 it = resources.begin(); it != resources.end(); ++it, pos++) |
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398 { |
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399 assert(database_.GetResourceType(*it) == queryLevel); |
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400 |
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401 const std::string resource = database_.GetPublicId(*it); |
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402 resourcesId.push_back(resource); |
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403 |
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404 if (instancesId != NULL) |
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405 { |
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406 if (queryLevel == ResourceType_Instance) |
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407 { |
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408 // The resource is itself the instance |
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409 instancesId->push_back(resource); |
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410 } |
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411 else |
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412 { |
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413 // Collect one child instance for each of the selected resources |
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414 instancesId->push_back(GetOneInstance(database_, *it, queryLevel)); |
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415 } |
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416 } |
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417 } |
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418 } |
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419 } |
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420 } |