Mercurial > hg > orthanc

annotate OrthancServer/ServerJobs/MergeStudyJob.cpp @ 3868:d5be23fc0106 transcoding

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
better negotiation of transfer syntaxes
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 28 Apr 2020 08:43:48 +0200
parents 023b2a9f3aa1
children 3661e2a72482
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
3640
94f4a18a79cc upgrade to year 2020
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3507
diff changeset
5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * modify it under the terms of the GNU General Public License as
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * published by the Free Software Foundation, either version 3 of the
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * License, or (at your option) any later version.
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * In addition, as a special exception, the copyright holders of this
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * program give permission to link the code of its release with the
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * that use the same license as the "OpenSSL" library), and distribute
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * the linked executables. You must obey the GNU General Public License
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * in all respects for all of the code used other than "OpenSSL". If you
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * modify file(s) with this exception, you may extend this exception to
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * your version of the file(s), but you are not obligated to do so. If
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * you do not wish to do so, delete this exception statement from your
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 * version. If you delete this exception statement from all source files
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 * in the program, then also delete it here.
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 *
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 * This program is distributed in the hope that it will be useful, but
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 * WITHOUT ANY WARRANTY; without even the implied warranty of
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 * General Public License for more details.
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 *
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 * You should have received a copy of the GNU General Public License
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 **/
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 #include "MergeStudyJob.h"
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 #include "../../Core/DicomParsing/FromDcmtkBridge.h"
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 #include "../../Core/Logging.h"
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 #include "../../Core/SerializationToolbox.h"
3095
beeeb6096f27 removing dependencies upon ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
39 #include "../ServerContext.h"
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 namespace Orthanc
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 void MergeStudyJob::AddSourceSeriesInternal(const std::string& series)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 // Generate a target SeriesInstanceUID for this series
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 seriesUidMap_[series] = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 // Add all the instances of the series as to be processed
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 std::list<std::string> instances;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 context_.GetIndex().GetChildren(instances, series);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 for (std::list<std::string>::const_iterator
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 it = instances.begin(); it != instances.end(); ++it)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 AddInstance(*it);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 void MergeStudyJob::AddSourceStudyInternal(const std::string& study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 if (study == targetStudy_)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
65 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
66 "Cannot merge a study into the same study: " + study);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 std::list<std::string> series;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 context_.GetIndex().GetChildren(series, study);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 for (std::list<std::string>::const_iterator
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 it = series.begin(); it != series.end(); ++it)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 AddSourceSeriesInternal(*it);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 bool MergeStudyJob::HandleInstance(const std::string& instance)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 /**
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 * Retrieve the DICOM instance to be modified
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86 **/
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
88 std::unique_ptr<ParsedDicomFile> modified;
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 try
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92 ServerContext::DicomCacheLocker locker(context_, instance);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 modified.reset(locker.GetDicom().Clone(true));
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 catch (OrthancException&)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 LOG(WARNING) << "An instance was removed after the job was issued: " << instance;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 return false;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102 /**
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 * Chose the target UIDs
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 **/
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 std::string series = modified->GetHasher().HashSeries();
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 SeriesUidMap::const_iterator targetSeriesUid = seriesUidMap_.find(series);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 if (targetSeriesUid == seriesUidMap_.end())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 throw OrthancException(ErrorCode_BadFileFormat); // Should never happen
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 /**
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117 * Copy the tags from the "Patient Module Attributes" and "General
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118 * Study Module Attributes" modules of the target study
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119 **/
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 for (std::set<DicomTag>::const_iterator it = removals_.begin();
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 it != removals_.end(); ++it)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 modified->Remove(*it);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127 for (Replacements::const_iterator it = replacements_.begin();
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128 it != replacements_.end(); ++it)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
130 modified->ReplacePlainString(it->first, it->second);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
132
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
134 /**
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
135 * Store the new instance into Orthanc
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136 **/
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
137
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138 modified->ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, targetSeriesUid->second);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139
3507
69e49fc044f8 Fix generation of "SOP Instance UID" on split and merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3095
diff changeset
140 // Fix since Orthanc 1.5.8: Assign new "SOPInstanceUID", as the instance has been modified
69e49fc044f8 Fix generation of "SOP Instance UID" on split and merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3095
diff changeset
141 modified->ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
69e49fc044f8 Fix generation of "SOP Instance UID" on split and merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3095
diff changeset
142
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143 DicomInstanceToStore toStore;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144 toStore.SetOrigin(origin_);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 toStore.SetParsedDicomFile(*modified);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
146
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 std::string modifiedInstance;
3814
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
148 if (context_.Store(modifiedInstance, toStore,
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
149 StoreInstanceMode_Default) != StoreStatus_Success)
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
150 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
151 LOG(ERROR) << "Error while storing a modified instance " << instance;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152 return false;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
154
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
155 return true;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
156 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
158
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
159 bool MergeStudyJob::HandleTrailingStep()
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
161 if (!keepSource_)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
162 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
163 const size_t n = GetInstancesCount();
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
164
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
165 for (size_t i = 0; i < n; i++)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
166 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
167 Json::Value tmp;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
168 context_.DeleteResource(tmp, GetInstance(i), ResourceType_Instance);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
169 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
170 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172 return true;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
173 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
174
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
176 MergeStudyJob::MergeStudyJob(ServerContext& context,
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177 const std::string& targetStudy) :
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
178 context_(context),
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
179 keepSource_(false),
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
180 targetStudy_(targetStudy)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
181 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
182 /**
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
183 * Check the validity of the input ID
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184 **/
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
185
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
186 ResourceType type;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
187
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
188 if (!context_.GetIndex().LookupResourceType(type, targetStudy) ||
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189 type != ResourceType_Study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
190 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
191 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
192 "Cannot merge into an unknown study: " + targetStudy);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
193 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
194
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
196 /**
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
197 * Detect the tags to be removed/replaced by parsing one child
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
198 * instance of the study
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
199 **/
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
200
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
201 DicomTag::AddTagsForModule(removals_, DicomModule_Patient);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202 DicomTag::AddTagsForModule(removals_, DicomModule_Study);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
203
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
204 std::list<std::string> instances;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
205 context_.GetIndex().GetChildInstances(instances, targetStudy);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
206
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
207 if (instances.empty())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
208 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
209 throw OrthancException(ErrorCode_UnknownResource);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
210 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
211
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
212 DicomMap dicom;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
213
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
214 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
215 ServerContext::DicomCacheLocker locker(context_, instances.front());
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
216 locker.GetDicom().ExtractDicomSummary(dicom);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219 const std::set<DicomTag> moduleTags = removals_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
220 for (std::set<DicomTag>::const_iterator it = moduleTags.begin();
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
221 it != moduleTags.end(); ++it)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
222 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
223 const DicomValue* value = dicom.TestAndGetValue(*it);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
224 std::string str;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
225
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
226 if (value != NULL &&
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
227 value->CopyToString(str, false))
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
228 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
229 removals_.erase(*it);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
230 replacements_.insert(std::make_pair(*it, str));
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
231 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
232 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
233 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
234
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
235
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 void MergeStudyJob::SetOrigin(const DicomInstanceOrigin& origin)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
238 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
239 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
240 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
241 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
242 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
243 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
244 origin_ = origin;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
245 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
246 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249 void MergeStudyJob::SetOrigin(const RestApiCall& call)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 SetOrigin(DicomInstanceOrigin::FromRest(call));
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
253
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
254
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 void MergeStudyJob::AddSource(const std::string& studyOrSeries)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 ResourceType level;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 else if (!context_.GetIndex().LookupResourceType(level, studyOrSeries))
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
265 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
266 "Cannot find this resource: " + studyOrSeries);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 switch (level)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272 case ResourceType_Study:
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 AddSourceStudyInternal(studyOrSeries);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 case ResourceType_Series:
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 AddSourceSeries(studyOrSeries);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 default:
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
281 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
282 "This resource is neither a study, nor a series: " +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
283 studyOrSeries + " is a " +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
284 std::string(EnumerationToString(level)));
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290 void MergeStudyJob::AddSourceSeries(const std::string& series)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292 std::string parent;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
298 else if (!context_.GetIndex().LookupParent(parent, series, ResourceType_Study))
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
300 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
301 "This resource is not a series: " + series);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 else if (parent == targetStudy_)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
305 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
306 "Cannot merge series " + series +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
307 " into its parent study " + targetStudy_);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 AddSourceSeriesInternal(series);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 void MergeStudyJob::AddSourceStudy(const std::string& study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 ResourceType actualLevel;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 else if (!context_.GetIndex().LookupResourceType(actualLevel, study) ||
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 actualLevel != ResourceType_Study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
327 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
328 "This resource is not a study: " + study);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 AddSourceStudyInternal(study);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337 void MergeStudyJob::SetKeepSource(bool keep)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 keepSource_ = keep;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
348 void MergeStudyJob::GetPublicContent(Json::Value& value)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
350 SetOfInstancesJob::GetPublicContent(value);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
351 value["TargetStudy"] = targetStudy_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 static const char* KEEP_SOURCE = "KeepSource";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 static const char* TARGET_STUDY = "TargetStudy";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
357 static const char* REPLACEMENTS = "Replacements";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358 static const char* REMOVALS = "Removals";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 static const char* SERIES_UID_MAP = "SeriesUIDMap";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 static const char* ORIGIN = "Origin";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 MergeStudyJob::MergeStudyJob(ServerContext& context,
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 const Json::Value& serialized) :
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 SetOfInstancesJob(serialized), // (*)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 context_(context)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 if (!HasTrailingStep())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 // Should have been set by (*)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 throw OrthancException(ErrorCode_InternalError);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 keepSource_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SOURCE);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 targetStudy_ = SerializationToolbox::ReadString(serialized, TARGET_STUDY);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 SerializationToolbox::ReadMapOfTags(replacements_, serialized, REPLACEMENTS);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 SerializationToolbox::ReadMapOfStrings(seriesUidMap_, serialized, SERIES_UID_MAP);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
379 origin_ = DicomInstanceOrigin(serialized[ORIGIN]);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383 bool MergeStudyJob::Serialize(Json::Value& target)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 if (!SetOfInstancesJob::Serialize(target))
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 return false;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 target[KEEP_SOURCE] = keepSource_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392 target[TARGET_STUDY] = targetStudy_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393 SerializationToolbox::WriteMapOfTags(target, replacements_, REPLACEMENTS);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
394 SerializationToolbox::WriteSetOfTags(target, removals_, REMOVALS);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 SerializationToolbox::WriteMapOfStrings(target, seriesUidMap_, SERIES_UID_MAP);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 origin_.Serialize(target[ORIGIN]);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 return true;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 }