Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi.cpp @ 402:d2c69150a979
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 30 Apr 2013 11:50:51 +0200 |
parents | 4d5f0857ec9c |
children | c3e9b74aab7a |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
399 | 3 * Copyright (C) 2012-2013 Medical Physics Department, CHU of Liege, |
210
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4 * Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
230 | 33 #include "OrthancRestApi.h" |
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34 |
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35 #include "../Core/HttpServer/FilesystemHttpSender.h" |
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36 #include "../Core/Uuid.h" |
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37 #include "../Core/Compression/HierarchicalZipWriter.h" |
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38 #include "DicomProtocol/DicomUserConnection.h" |
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39 #include "FromDcmtkBridge.h" |
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40 #include "OrthancInitialization.h" |
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41 #include "ServerToolbox.h" |
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42 |
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43 #include <dcmtk/dcmdata/dcistrmb.h> |
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44 #include <dcmtk/dcmdata/dcfilefo.h> |
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45 #include <boost/lexical_cast.hpp> |
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46 #include <glog/logging.h> |
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47 |
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48 |
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49 #define RETRIEVE_CONTEXT(call) \ |
230 | 50 OrthancRestApi& contextApi = \ |
51 dynamic_cast<OrthancRestApi&>(call.GetContext()); \ | |
225 | 52 ServerContext& context = contextApi.GetContext() |
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53 |
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54 #define RETRIEVE_MODALITIES(call) \ |
230 | 55 const OrthancRestApi::Modalities& modalities = \ |
56 dynamic_cast<OrthancRestApi&>(call.GetContext()).GetModalities(); | |
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57 |
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58 |
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59 |
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60 namespace Orthanc |
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61 { |
315 | 62 // TODO IMPROVE MULTITHREADING |
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63 // Every call to "ParsedDicomFile" must lock this mutex!!! |
315 | 64 static boost::mutex cacheMutex_; |
65 | |
66 | |
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67 // DICOM SCU ---------------------------------------------------------------- |
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68 |
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69 static void ConnectToModality(DicomUserConnection& connection, |
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70 const std::string& name) |
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71 { |
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72 std::string aet, address; |
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73 int port; |
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74 GetDicomModality(name, aet, address, port); |
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75 connection.SetLocalApplicationEntityTitle(GetGlobalStringParameter("DicomAet", "ORTHANC")); |
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76 connection.SetDistantApplicationEntityTitle(aet); |
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77 connection.SetDistantHost(address); |
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78 connection.SetDistantPort(port); |
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79 connection.Open(); |
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80 } |
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81 |
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82 static bool MergeQueryAndTemplate(DicomMap& result, |
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83 const std::string& postData) |
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84 { |
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85 Json::Value query; |
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86 Json::Reader reader; |
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87 |
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88 if (!reader.parse(postData, query) || |
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89 query.type() != Json::objectValue) |
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90 { |
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91 return false; |
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92 } |
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93 |
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94 Json::Value::Members members = query.getMemberNames(); |
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95 for (size_t i = 0; i < members.size(); i++) |
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96 { |
304 | 97 DicomTag t = FromDcmtkBridge::ParseTag(members[i]); |
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98 result.SetValue(t, query[members[i]].asString()); |
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99 } |
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100 |
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101 return true; |
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102 } |
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103 |
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104 static void DicomFindPatient(RestApi::PostCall& call) |
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105 { |
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106 DicomMap m; |
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107 DicomMap::SetupFindPatientTemplate(m); |
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108 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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109 { |
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110 return; |
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111 } |
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112 |
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113 DicomUserConnection connection; |
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114 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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115 |
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116 DicomFindAnswers answers; |
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117 connection.FindPatient(answers, m); |
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118 |
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119 Json::Value result; |
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120 answers.ToJson(result); |
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121 call.GetOutput().AnswerJson(result); |
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122 } |
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123 |
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124 static void DicomFindStudy(RestApi::PostCall& call) |
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125 { |
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126 DicomMap m; |
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127 DicomMap::SetupFindStudyTemplate(m); |
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128 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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129 { |
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130 return; |
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131 } |
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132 |
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133 if (m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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134 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) |
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135 { |
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136 return; |
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137 } |
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138 |
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139 DicomUserConnection connection; |
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140 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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141 |
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142 DicomFindAnswers answers; |
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143 connection.FindStudy(answers, m); |
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144 |
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145 Json::Value result; |
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146 answers.ToJson(result); |
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147 call.GetOutput().AnswerJson(result); |
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148 } |
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149 |
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150 static void DicomFindSeries(RestApi::PostCall& call) |
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151 { |
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152 DicomMap m; |
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153 DicomMap::SetupFindSeriesTemplate(m); |
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154 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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155 { |
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156 return; |
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157 } |
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158 |
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159 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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160 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) || |
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161 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2) |
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162 { |
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163 return; |
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164 } |
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165 |
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166 DicomUserConnection connection; |
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167 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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168 |
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169 DicomFindAnswers answers; |
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170 connection.FindSeries(answers, m); |
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171 |
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172 Json::Value result; |
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173 answers.ToJson(result); |
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174 call.GetOutput().AnswerJson(result); |
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175 } |
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176 |
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177 static void DicomFind(RestApi::PostCall& call) |
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178 { |
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179 DicomMap m; |
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180 DicomMap::SetupFindPatientTemplate(m); |
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181 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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182 { |
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183 return; |
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184 } |
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185 |
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186 DicomUserConnection connection; |
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187 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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188 |
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189 DicomFindAnswers patients; |
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190 connection.FindPatient(patients, m); |
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191 |
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192 // Loop over the found patients |
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193 Json::Value result = Json::arrayValue; |
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194 for (size_t i = 0; i < patients.GetSize(); i++) |
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195 { |
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196 Json::Value patient(Json::objectValue); |
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197 FromDcmtkBridge::ToJson(patient, patients.GetAnswer(i)); |
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198 |
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199 DicomMap::SetupFindStudyTemplate(m); |
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200 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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201 { |
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202 return; |
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203 } |
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204 m.CopyTagIfExists(patients.GetAnswer(i), DICOM_TAG_PATIENT_ID); |
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205 |
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206 DicomFindAnswers studies; |
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207 connection.FindStudy(studies, m); |
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208 |
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209 patient["Studies"] = Json::arrayValue; |
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210 |
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211 // Loop over the found studies |
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212 for (size_t j = 0; j < studies.GetSize(); j++) |
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213 { |
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214 Json::Value study(Json::objectValue); |
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215 FromDcmtkBridge::ToJson(study, studies.GetAnswer(j)); |
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216 |
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217 DicomMap::SetupFindSeriesTemplate(m); |
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218 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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219 { |
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220 return; |
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221 } |
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222 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_PATIENT_ID); |
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223 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_STUDY_INSTANCE_UID); |
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224 |
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225 DicomFindAnswers series; |
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226 connection.FindSeries(series, m); |
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227 |
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228 // Loop over the found series |
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229 study["Series"] = Json::arrayValue; |
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230 for (size_t k = 0; k < series.GetSize(); k++) |
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231 { |
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232 Json::Value series2(Json::objectValue); |
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233 FromDcmtkBridge::ToJson(series2, series.GetAnswer(k)); |
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234 study["Series"].append(series2); |
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235 } |
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236 |
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237 patient["Studies"].append(study); |
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238 } |
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239 |
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240 result.append(patient); |
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241 } |
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242 |
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243 call.GetOutput().AnswerJson(result); |
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244 } |
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245 |
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246 |
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247 static void DicomStore(RestApi::PostCall& call) |
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248 { |
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249 RETRIEVE_CONTEXT(call); |
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250 |
231 | 251 std::string remote = call.GetUriComponent("id", ""); |
402 | 252 std::string stripped = Toolbox::StripSpaces(call.GetPostBody()); |
253 | |
254 Json::Value request; | |
255 if (Toolbox::IsSHA1(stripped)) | |
256 { | |
257 // This is for compatibility with Orthanc <= 0.5.1. | |
258 request = stripped; | |
259 } | |
260 else if (!call.ParseJsonRequest(request)) | |
261 { | |
262 // Bad JSON request | |
263 return; | |
264 } | |
265 | |
266 std::list<std::string> instances; | |
267 if (request.isString()) | |
268 { | |
269 context.GetIndex().LogExportedResource(request.asString(), remote); | |
270 context.GetIndex().GetChildInstances(instances, request.asString()); | |
271 } | |
272 else if (request.isArray()) | |
273 { | |
274 for (Json::Value::ArrayIndex i = 0; i < request.size(); i++) | |
275 { | |
276 if (!request[i].isString()) | |
277 { | |
278 return; | |
279 } | |
280 | |
281 std::string stripped = Toolbox::StripSpaces(request[i].asString()); | |
282 if (!Toolbox::IsSHA1(stripped)) | |
283 { | |
284 return; | |
285 } | |
286 | |
287 context.GetIndex().LogExportedResource(stripped, remote); | |
288 | |
289 std::list<std::string> tmp; | |
290 context.GetIndex().GetChildInstances(tmp, stripped); | |
291 instances.merge(tmp); | |
292 assert(tmp.size() == 0); | |
293 } | |
294 } | |
295 else | |
296 { | |
297 // Neither a string, nor a list of strings. Bad request. | |
298 return; | |
299 } | |
300 | |
227
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301 DicomUserConnection connection; |
231 | 302 ConnectToModality(connection, remote); |
303 | |
402 | 304 for (std::list<std::string>::const_iterator |
305 it = instances.begin(); it != instances.end(); it++) | |
227
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306 { |
402 | 307 std::string dicom; |
308 context.ReadFile(dicom, *it, FileContentType_Dicom); | |
309 connection.Store(dicom); | |
227
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310 } |
231 | 311 |
402 | 312 call.GetOutput().AnswerBuffer("{}", "application/json"); |
227
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313 } |
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314 |
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315 |
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316 |
210
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317 // System information ------------------------------------------------------- |
211 | 318 |
319 static void ServeRoot(RestApi::GetCall& call) | |
320 { | |
321 call.GetOutput().Redirect("app/explorer.html"); | |
322 } | |
210
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323 |
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324 static void GetSystemInformation(RestApi::GetCall& call) |
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325 { |
238 | 326 Json::Value result = Json::objectValue; |
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327 |
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328 result["Version"] = ORTHANC_VERSION; |
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329 result["Name"] = GetGlobalStringParameter("Name", ""); |
238 | 330 |
331 call.GetOutput().AnswerJson(result); | |
332 } | |
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333 |
238 | 334 static void GetStatistics(RestApi::GetCall& call) |
335 { | |
336 RETRIEVE_CONTEXT(call); | |
337 Json::Value result = Json::objectValue; | |
338 context.GetIndex().ComputeStatistics(result); | |
210
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339 call.GetOutput().AnswerJson(result); |
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340 } |
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341 |
342
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342 static void GenerateUid(RestApi::GetCall& call) |
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343 { |
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344 std::string level = call.GetArgument("level", ""); |
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345 if (level == "patient") |
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346 { |
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347 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient), "text/plain"); |
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348 } |
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349 else if (level == "study") |
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350 { |
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351 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study), "text/plain"); |
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352 } |
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353 else if (level == "series") |
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354 { |
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355 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series), "text/plain"); |
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356 } |
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357 else if (level == "instance") |
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358 { |
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359 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance), "text/plain"); |
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360 } |
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361 } |
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362 |
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363 |
211 | 364 // List all the patients, studies, series or instances ---------------------- |
365 | |
366 template <enum ResourceType resourceType> | |
367 static void ListResources(RestApi::GetCall& call) | |
368 { | |
369 RETRIEVE_CONTEXT(call); | |
370 | |
371 Json::Value result; | |
372 context.GetIndex().GetAllUuids(result, resourceType); | |
373 call.GetOutput().AnswerJson(result); | |
374 } | |
375 | |
212 | 376 template <enum ResourceType resourceType> |
377 static void GetSingleResource(RestApi::GetCall& call) | |
378 { | |
379 RETRIEVE_CONTEXT(call); | |
380 | |
381 Json::Value result; | |
382 if (context.GetIndex().LookupResource(result, call.GetUriComponent("id", ""), resourceType)) | |
383 { | |
384 call.GetOutput().AnswerJson(result); | |
385 } | |
386 } | |
387 | |
388 template <enum ResourceType resourceType> | |
389 static void DeleteSingleResource(RestApi::DeleteCall& call) | |
390 { | |
391 RETRIEVE_CONTEXT(call); | |
392 | |
393 Json::Value result; | |
394 if (context.GetIndex().DeleteResource(result, call.GetUriComponent("id", ""), resourceType)) | |
395 { | |
396 call.GetOutput().AnswerJson(result); | |
397 } | |
398 } | |
399 | |
211 | 400 |
248
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401 // Download of ZIP files ---------------------------------------------------- |
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402 |
250
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403 |
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404 static std::string GetDirectoryNameInArchive(const Json::Value& resource, |
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405 ResourceType resourceType) |
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406 { |
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407 switch (resourceType) |
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408 { |
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409 case ResourceType_Patient: |
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410 { |
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411 std::string p = resource["MainDicomTags"]["PatientID"].asString(); |
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412 std::string n = resource["MainDicomTags"]["PatientName"].asString(); |
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413 return p + " " + n; |
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414 } |
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415 |
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416 case ResourceType_Study: |
253 | 417 { |
250
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418 return resource["MainDicomTags"]["StudyDescription"].asString(); |
253 | 419 } |
250
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420 |
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421 case ResourceType_Series: |
253 | 422 { |
423 std::string d = resource["MainDicomTags"]["SeriesDescription"].asString(); | |
424 std::string m = resource["MainDicomTags"]["Modality"].asString(); | |
425 return m + " " + d; | |
426 } | |
250
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427 |
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428 default: |
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429 throw OrthancException(ErrorCode_InternalError); |
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430 } |
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431 } |
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432 |
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433 static bool CreateRootDirectoryInArchive(HierarchicalZipWriter& writer, |
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434 ServerContext& context, |
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435 const Json::Value& resource, |
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436 ResourceType resourceType) |
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437 { |
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438 if (resourceType == ResourceType_Patient) |
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439 { |
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440 return true; |
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441 } |
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442 |
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443 ResourceType parentType = GetParentResourceType(resourceType); |
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444 Json::Value parent; |
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445 |
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446 switch (resourceType) |
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447 { |
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448 case ResourceType_Study: |
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449 { |
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450 if (!context.GetIndex().LookupResource(parent, resource["ParentPatient"].asString(), parentType)) |
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451 { |
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452 return false; |
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453 } |
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454 |
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455 break; |
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456 } |
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457 |
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458 case ResourceType_Series: |
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459 if (!context.GetIndex().LookupResource(parent, resource["ParentStudy"].asString(), parentType) || |
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460 !CreateRootDirectoryInArchive(writer, context, parent, parentType)) |
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461 { |
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462 return false; |
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463 } |
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464 break; |
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465 |
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466 default: |
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467 throw OrthancException(ErrorCode_NotImplemented); |
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468 } |
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469 |
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470 writer.OpenDirectory(GetDirectoryNameInArchive(parent, parentType).c_str()); |
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471 return true; |
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472 } |
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473 |
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474 static bool ArchiveInstance(HierarchicalZipWriter& writer, |
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475 ServerContext& context, |
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476 const std::string& instancePublicId) |
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477 { |
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478 Json::Value instance; |
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479 if (!context.GetIndex().LookupResource(instance, instancePublicId, ResourceType_Instance)) |
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480 { |
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481 return false; |
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482 } |
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483 |
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484 std::string filename = instance["MainDicomTags"]["SOPInstanceUID"].asString() + ".dcm"; |
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485 writer.OpenFile(filename.c_str()); |
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486 |
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487 std::string dicom; |
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488 context.ReadFile(dicom, instancePublicId, FileContentType_Dicom); |
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489 writer.Write(dicom); |
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490 |
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491 return true; |
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492 } |
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493 |
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494 static bool ArchiveInternal(HierarchicalZipWriter& writer, |
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495 ServerContext& context, |
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496 const std::string& publicId, |
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497 ResourceType resourceType, |
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498 bool isFirstLevel) |
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499 { |
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500 Json::Value resource; |
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501 if (!context.GetIndex().LookupResource(resource, publicId, resourceType)) |
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502 { |
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503 return false; |
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504 } |
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505 |
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506 if (isFirstLevel && |
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507 !CreateRootDirectoryInArchive(writer, context, resource, resourceType)) |
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508 { |
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509 return false; |
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510 } |
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511 |
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512 writer.OpenDirectory(GetDirectoryNameInArchive(resource, resourceType).c_str()); |
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513 |
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514 switch (resourceType) |
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515 { |
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516 case ResourceType_Patient: |
299 | 517 for (Json::Value::ArrayIndex i = 0; i < resource["Studies"].size(); i++) |
250
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518 { |
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519 std::string studyId = resource["Studies"][i].asString(); |
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520 if (!ArchiveInternal(writer, context, studyId, ResourceType_Study, false)) |
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521 { |
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522 return false; |
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523 } |
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524 } |
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525 break; |
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526 |
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527 case ResourceType_Study: |
299 | 528 for (Json::Value::ArrayIndex i = 0; i < resource["Series"].size(); i++) |
250
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529 { |
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530 std::string seriesId = resource["Series"][i].asString(); |
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531 if (!ArchiveInternal(writer, context, seriesId, ResourceType_Series, false)) |
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532 { |
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533 return false; |
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534 } |
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535 } |
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536 break; |
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537 |
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538 case ResourceType_Series: |
299 | 539 for (Json::Value::ArrayIndex i = 0; i < resource["Instances"].size(); i++) |
250
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540 { |
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541 if (!ArchiveInstance(writer, context, resource["Instances"][i].asString())) |
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542 { |
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543 return false; |
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544 } |
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545 } |
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546 break; |
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547 |
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548 default: |
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549 throw OrthancException(ErrorCode_InternalError); |
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550 } |
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551 |
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552 writer.CloseDirectory(); |
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553 return true; |
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554 } |
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555 |
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556 template <enum ResourceType resourceType> |
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557 static void GetArchive(RestApi::GetCall& call) |
248
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558 { |
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|
559 RETRIEVE_CONTEXT(call); |
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560 |
250
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561 // Create a RAII for the temporary file to manage the ZIP file |
248
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562 Toolbox::TemporaryFile tmp; |
250
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563 std::string id = call.GetUriComponent("id", ""); |
248
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564 |
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565 { |
250
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566 // Create a ZIP writer |
248
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567 HierarchicalZipWriter writer(tmp.GetPath().c_str()); |
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568 |
250
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569 // Store the requested resource into the ZIP |
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570 if (!ArchiveInternal(writer, context, id, resourceType, true)) |
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571 { |
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572 return; |
248
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|
573 } |
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574 } |
250
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575 |
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576 // Prepare the sending of the ZIP file |
248
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577 FilesystemHttpSender sender(tmp.GetPath().c_str()); |
250
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578 sender.SetContentType("application/zip"); |
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579 sender.SetDownloadFilename(id + ".zip"); |
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580 |
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581 // Send the ZIP |
248
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582 call.GetOutput().AnswerFile(sender); |
250
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583 |
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584 // The temporary file is automatically removed thanks to the RAII |
248
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585 } |
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|
586 |
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587 |
210
96b7918a6a18
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|
588 // Changes API -------------------------------------------------------------- |
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|
589 |
231 | 590 static void GetSinceAndLimit(int64_t& since, |
591 unsigned int& limit, | |
237
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592 bool& last, |
231 | 593 const RestApi::GetCall& call) |
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594 { |
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595 static const unsigned int MAX_RESULTS = 100; |
237
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596 |
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597 if (call.HasArgument("last")) |
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598 { |
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599 last = true; |
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600 return; |
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601 } |
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602 |
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603 last = false; |
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604 |
210
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605 try |
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606 { |
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607 since = boost::lexical_cast<int64_t>(call.GetArgument("since", "0")); |
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608 limit = boost::lexical_cast<unsigned int>(call.GetArgument("limit", "0")); |
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609 } |
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610 catch (boost::bad_lexical_cast) |
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611 { |
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612 return; |
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613 } |
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614 |
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615 if (limit == 0 || limit > MAX_RESULTS) |
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616 { |
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617 limit = MAX_RESULTS; |
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618 } |
231 | 619 } |
620 | |
621 static void GetChanges(RestApi::GetCall& call) | |
622 { | |
623 RETRIEVE_CONTEXT(call); | |
624 | |
625 //std::string filter = GetArgument(getArguments, "filter", ""); | |
626 int64_t since; | |
627 unsigned int limit; | |
237
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628 bool last; |
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629 GetSinceAndLimit(since, limit, last, call); |
210
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630 |
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631 Json::Value result; |
237
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632 if ((!last && context.GetIndex().GetChanges(result, since, limit)) || |
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633 ( last && context.GetIndex().GetLastChange(result))) |
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634 { |
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635 call.GetOutput().AnswerJson(result); |
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636 } |
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637 } |
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638 |
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639 |
231 | 640 static void GetExports(RestApi::GetCall& call) |
641 { | |
642 RETRIEVE_CONTEXT(call); | |
643 | |
644 int64_t since; | |
645 unsigned int limit; | |
237
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646 bool last; |
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647 GetSinceAndLimit(since, limit, last, call); |
231 | 648 |
649 Json::Value result; | |
237
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650 if ((!last && context.GetIndex().GetExportedResources(result, since, limit)) || |
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651 ( last && context.GetIndex().GetLastExportedResource(result))) |
231 | 652 { |
653 call.GetOutput().AnswerJson(result); | |
654 } | |
655 } | |
656 | |
210
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657 |
272
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658 // Get information about a single patient ----------------------------------- |
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659 |
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660 static void IsProtectedPatient(RestApi::GetCall& call) |
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661 { |
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662 RETRIEVE_CONTEXT(call); |
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663 std::string publicId = call.GetUriComponent("id", ""); |
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664 bool isProtected = context.GetIndex().IsProtectedPatient(publicId); |
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665 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", "text/plain"); |
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666 } |
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667 |
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668 |
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669 static void SetPatientProtection(RestApi::PutCall& call) |
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670 { |
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671 RETRIEVE_CONTEXT(call); |
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672 std::string publicId = call.GetUriComponent("id", ""); |
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673 std::string s = Toolbox::StripSpaces(call.GetPutBody()); |
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674 |
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675 if (s == "0") |
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676 { |
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677 context.GetIndex().SetProtectedPatient(publicId, false); |
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678 call.GetOutput().AnswerBuffer("", "text/plain"); |
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679 } |
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680 else if (s == "1") |
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681 { |
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682 context.GetIndex().SetProtectedPatient(publicId, true); |
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683 call.GetOutput().AnswerBuffer("", "text/plain"); |
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684 } |
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685 else |
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686 { |
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687 // Bad request |
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688 } |
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689 } |
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690 |
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691 |
213
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692 // Get information about a single instance ---------------------------------- |
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693 |
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694 static void GetInstanceFile(RestApi::GetCall& call) |
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695 { |
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696 RETRIEVE_CONTEXT(call); |
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697 |
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698 std::string publicId = call.GetUriComponent("id", ""); |
233 | 699 context.AnswerFile(call.GetOutput(), publicId, FileContentType_Dicom); |
213
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700 } |
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701 |
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702 |
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703 template <bool simplify> |
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704 static void GetInstanceTags(RestApi::GetCall& call) |
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705 { |
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706 RETRIEVE_CONTEXT(call); |
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707 |
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708 std::string publicId = call.GetUriComponent("id", ""); |
226
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709 |
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710 Json::Value full; |
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711 context.ReadJson(full, publicId); |
213
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712 |
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713 if (simplify) |
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714 { |
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715 Json::Value simplified; |
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716 SimplifyTags(simplified, full); |
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717 call.GetOutput().AnswerJson(simplified); |
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718 } |
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719 else |
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720 { |
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721 call.GetOutput().AnswerJson(full); |
213
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722 } |
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723 } |
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724 |
214 | 725 |
726 static void ListFrames(RestApi::GetCall& call) | |
727 { | |
728 RETRIEVE_CONTEXT(call); | |
729 | |
730 Json::Value instance; | |
731 if (context.GetIndex().LookupResource(instance, call.GetUriComponent("id", ""), ResourceType_Instance)) | |
732 { | |
733 unsigned int numberOfFrames = 1; | |
734 | |
735 try | |
736 { | |
737 Json::Value tmp = instance["MainDicomTags"]["NumberOfFrames"]; | |
738 numberOfFrames = boost::lexical_cast<unsigned int>(tmp.asString()); | |
739 } | |
740 catch (...) | |
741 { | |
742 } | |
743 | |
744 Json::Value result = Json::arrayValue; | |
745 for (unsigned int i = 0; i < numberOfFrames; i++) | |
746 { | |
747 result.append(i); | |
748 } | |
749 | |
750 call.GetOutput().AnswerJson(result); | |
751 } | |
752 } | |
753 | |
213
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754 |
215
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755 template <enum ImageExtractionMode mode> |
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756 static void GetImage(RestApi::GetCall& call) |
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757 { |
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758 RETRIEVE_CONTEXT(call); |
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759 |
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760 std::string frameId = call.GetUriComponent("frame", "0"); |
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761 |
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762 unsigned int frame; |
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763 try |
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764 { |
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765 frame = boost::lexical_cast<unsigned int>(frameId); |
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766 } |
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767 catch (boost::bad_lexical_cast) |
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768 { |
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769 return; |
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770 } |
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771 |
227
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772 std::string publicId = call.GetUriComponent("id", ""); |
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773 std::string dicomContent, png; |
233 | 774 context.ReadFile(dicomContent, publicId, FileContentType_Dicom); |
215
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775 |
227
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776 try |
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777 { |
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778 FromDcmtkBridge::ExtractPngImage(png, dicomContent, frame, mode); |
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779 call.GetOutput().AnswerBuffer(png, "image/png"); |
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780 } |
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781 catch (OrthancException& e) |
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782 { |
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783 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange) |
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784 { |
227
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785 // The frame number is out of the range for this DICOM |
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786 // instance, the resource is not existent |
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787 } |
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788 else |
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789 { |
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790 std::string root = ""; |
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791 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
215
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792 { |
227
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793 root += "../"; |
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794 } |
218 | 795 |
227
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796 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
215
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797 } |
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798 } |
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799 } |
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800 |
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801 |
216
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802 // Upload of DICOM files through HTTP --------------------------------------- |
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803 |
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804 static void UploadDicomFile(RestApi::PostCall& call) |
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805 { |
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806 RETRIEVE_CONTEXT(call); |
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807 |
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808 const std::string& postData = call.GetPostBody(); |
291
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809 if (postData.size() == 0) |
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810 { |
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811 return; |
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812 } |
216
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813 |
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814 LOG(INFO) << "Receiving a DICOM file of " << postData.size() << " bytes through HTTP"; |
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815 |
304 | 816 std::string publicId; |
817 StoreStatus status = context.Store(publicId, postData); | |
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818 Json::Value result = Json::objectValue; |
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819 |
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820 if (status != StoreStatus_Failure) |
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821 { |
304 | 822 result["ID"] = publicId; |
823 result["Path"] = GetBasePath(ResourceType_Instance, publicId); | |
216
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824 } |
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825 |
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826 result["Status"] = ToString(status); |
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827 call.GetOutput().AnswerJson(result); |
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828 } |
215
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829 |
210
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830 |
304 | 831 |
210
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832 // DICOM bridge ------------------------------------------------------------- |
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833 |
230 | 834 static bool IsExistingModality(const OrthancRestApi::Modalities& modalities, |
227
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835 const std::string& id) |
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836 { |
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837 return modalities.find(id) != modalities.end(); |
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838 } |
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839 |
210
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840 static void ListModalities(RestApi::GetCall& call) |
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841 { |
227
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842 RETRIEVE_MODALITIES(call); |
210
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843 |
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|
844 Json::Value result = Json::arrayValue; |
230 | 845 for (OrthancRestApi::Modalities::const_iterator |
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846 it = modalities.begin(); it != modalities.end(); it++) |
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847 { |
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848 result.append(*it); |
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849 } |
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|
850 |
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|
851 call.GetOutput().AnswerJson(result); |
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852 } |
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|
853 |
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|
854 |
227
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855 static void ListModalityOperations(RestApi::GetCall& call) |
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856 { |
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857 RETRIEVE_MODALITIES(call); |
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858 |
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859 std::string id = call.GetUriComponent("id", ""); |
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860 if (IsExistingModality(modalities, id)) |
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861 { |
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862 Json::Value result = Json::arrayValue; |
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863 result.append("find-patient"); |
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864 result.append("find-study"); |
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865 result.append("find-series"); |
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866 result.append("find"); |
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867 result.append("store"); |
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868 call.GetOutput().AnswerJson(result); |
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869 } |
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870 } |
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|
871 |
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872 |
213
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873 |
285
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874 // Raw access to the DICOM tags of an instance ------------------------------ |
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875 |
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876 static void GetRawContent(RestApi::GetCall& call) |
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877 { |
315 | 878 boost::mutex::scoped_lock lock(cacheMutex_); |
285
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879 |
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880 RETRIEVE_CONTEXT(call); |
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881 std::string id = call.GetUriComponent("id", ""); |
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882 ParsedDicomFile& dicom = context.GetDicomFile(id); |
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883 dicom.SendPathValue(call.GetOutput(), call.GetTrailingUri()); |
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884 } |
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885 |
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886 |
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887 |
304 | 888 // Modification of DICOM instances ------------------------------------------ |
889 | |
311 | 890 namespace |
891 { | |
892 typedef std::set<DicomTag> Removals; | |
893 typedef std::map<DicomTag, std::string> Replacements; | |
350
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894 typedef std::map< std::pair<DicomRootLevel, std::string>, std::string> UidMap; |
311 | 895 } |
310 | 896 |
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897 static void ReplaceInstanceInternal(ParsedDicomFile& toModify, |
310 | 898 const Removals& removals, |
899 const Replacements& replacements, | |
312 | 900 DicomReplaceMode mode, |
901 bool removePrivateTags) | |
304 | 902 { |
312 | 903 if (removePrivateTags) |
904 { | |
905 toModify.RemovePrivateTags(); | |
906 } | |
907 | |
310 | 908 for (Removals::const_iterator it = removals.begin(); |
909 it != removals.end(); it++) | |
910 { | |
911 toModify.Remove(*it); | |
912 } | |
913 | |
914 for (Replacements::const_iterator it = replacements.begin(); | |
915 it != replacements.end(); it++) | |
916 { | |
917 toModify.Replace(it->first, it->second, mode); | |
918 } | |
919 | |
920 // A new SOP instance UID is automatically generated | |
921 std::string instanceUid = FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance); | |
922 toModify.Replace(DICOM_TAG_SOP_INSTANCE_UID, instanceUid, DicomReplaceMode_InsertIfAbsent); | |
923 } | |
924 | |
925 | |
926 static void ParseRemovals(Removals& target, | |
927 const Json::Value& removals) | |
928 { | |
929 if (!removals.isArray()) | |
304 | 930 { |
931 throw OrthancException(ErrorCode_BadRequest); | |
932 } | |
933 | |
310 | 934 target.clear(); |
935 | |
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936 for (Json::Value::ArrayIndex i = 0; i < removals.size(); i++) |
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937 { |
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938 std::string name = removals[i].asString(); |
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939 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
310 | 940 target.insert(tag); |
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941 |
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942 VLOG(1) << "Removal: " << name << " " << tag << std::endl; |
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943 } |
310 | 944 } |
945 | |
946 | |
947 static void ParseReplacements(Replacements& target, | |
948 const Json::Value& replacements) | |
949 { | |
950 if (!replacements.isObject()) | |
951 { | |
952 throw OrthancException(ErrorCode_BadRequest); | |
953 } | |
954 | |
955 target.clear(); | |
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956 |
304 | 957 Json::Value::Members members = replacements.getMemberNames(); |
958 for (size_t i = 0; i < members.size(); i++) | |
959 { | |
960 const std::string& name = members[i]; | |
961 std::string value = replacements[name].asString(); | |
962 | |
963 DicomTag tag = FromDcmtkBridge::ParseTag(name); | |
310 | 964 target[tag] = value; |
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965 |
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966 VLOG(1) << "Replacement: " << name << " " << tag << " == " << value << std::endl; |
304 | 967 } |
968 } | |
969 | |
310 | 970 |
311 | 971 static std::string GeneratePatientName(ServerContext& context) |
972 { | |
973 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); | |
974 return "Anonymized" + boost::lexical_cast<std::string>(seq); | |
975 } | |
976 | |
977 | |
310 | 978 static void SetupAnonymization(Removals& removals, |
979 Replacements& replacements) | |
980 { | |
311 | 981 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles |
310 | 982 removals.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID |
311 | 983 //removals.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set by ReplaceInstanceInternal() |
984 removals.insert(DicomTag(0x0008, 0x0050)); // Accession Number | |
985 removals.insert(DicomTag(0x0008, 0x0080)); // Institution Name | |
986 removals.insert(DicomTag(0x0008, 0x0081)); // Institution Address | |
987 removals.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name | |
988 removals.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address | |
989 removals.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers | |
990 removals.insert(DicomTag(0x0008, 0x1010)); // Station Name | |
991 removals.insert(DicomTag(0x0008, 0x1030)); // Study Description | |
992 removals.insert(DicomTag(0x0008, 0x103e)); // Series Description | |
993 removals.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name | |
994 removals.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record | |
995 removals.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name | |
996 removals.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study | |
997 removals.insert(DicomTag(0x0008, 0x1070)); // Operators' Name | |
998 removals.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description | |
999 removals.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID | |
1000 removals.insert(DicomTag(0x0008, 0x2111)); // Derivation Description | |
1001 removals.insert(DicomTag(0x0010, 0x0010)); // Patient's Name | |
1002 removals.insert(DicomTag(0x0010, 0x0020)); // Patient ID | |
1003 removals.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date | |
1004 removals.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time | |
1005 removals.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex | |
1006 removals.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids | |
1007 removals.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names | |
1008 removals.insert(DicomTag(0x0010, 0x1010)); // Patient's Age | |
1009 removals.insert(DicomTag(0x0010, 0x1020)); // Patient's Size | |
1010 removals.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight | |
1011 removals.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator | |
1012 removals.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group | |
1013 removals.insert(DicomTag(0x0010, 0x2180)); // Occupation | |
1014 removals.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History | |
1015 removals.insert(DicomTag(0x0010, 0x4000)); // Patient Comments | |
1016 removals.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number | |
1017 removals.insert(DicomTag(0x0018, 0x1030)); // Protocol Name | |
1018 //removals.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => generated below | |
1019 //removals.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => generated below | |
1020 removals.insert(DicomTag(0x0020, 0x0010)); // Study ID | |
1021 removals.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID | |
1022 removals.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID | |
1023 removals.insert(DicomTag(0x0020, 0x4000)); // Image Comments | |
1024 removals.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence | |
1025 removals.insert(DicomTag(0x0040, 0xa124)); // UID | |
1026 removals.insert(DicomTag(0x0040, 0xa730)); // Content Sequence | |
1027 removals.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID | |
1028 removals.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID | |
1029 removals.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID | |
1030 | |
1031 // Some more removals (from the experience of DICOM files at the CHU of Liege) | |
1032 removals.insert(DicomTag(0x0010, 0x1040)); // Patient's Address | |
1033 removals.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician | |
1034 | |
1035 // Set the DeidentificationMethod tag | |
1036 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0063), "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1")); | |
1037 | |
1038 // Set the PatientIdentityRemoved | |
1039 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0062), "YES")); | |
1040 | |
321 | 1041 // Generate random study UID if not specified |
1042 if (replacements.find(DICOM_TAG_STUDY_INSTANCE_UID) == replacements.end()) | |
1043 { | |
1044 replacements.insert(std::make_pair(DICOM_TAG_STUDY_INSTANCE_UID, | |
1045 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study))); | |
1046 } | |
1047 | |
1048 // Generate random series UID if not specified | |
1049 if (replacements.find(DICOM_TAG_SERIES_INSTANCE_UID) == replacements.end()) | |
1050 { | |
1051 replacements.insert(std::make_pair(DICOM_TAG_SERIES_INSTANCE_UID, | |
1052 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series))); | |
1053 } | |
310 | 1054 } |
1055 | |
1056 | |
1057 static bool ParseModifyRequest(Removals& removals, | |
1058 Replacements& replacements, | |
312 | 1059 bool& removePrivateTags, |
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1060 const RestApi::PostCall& call) |
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1061 { |
312 | 1062 removePrivateTags = false; |
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1063 Json::Value request; |
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1064 if (call.ParseJsonRequest(request) && |
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1065 request.isObject()) |
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1066 { |
310 | 1067 Json::Value removalsPart = Json::arrayValue; |
1068 Json::Value replacementsPart = Json::objectValue; | |
304 | 1069 |
306
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1070 if (request.isMember("Remove")) |
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1071 { |
310 | 1072 removalsPart = request["Remove"]; |
306
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1073 } |
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1074 |
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1075 if (request.isMember("Replace")) |
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1076 { |
310 | 1077 replacementsPart = request["Replace"]; |
306
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1078 } |
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1079 |
312 | 1080 if (request.isMember("RemovePrivateTags")) |
1081 { | |
1082 removePrivateTags = true; | |
1083 } | |
1084 | |
310 | 1085 ParseRemovals(removals, removalsPart); |
1086 ParseReplacements(replacements, replacementsPart); | |
1087 | |
306
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1088 return true; |
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1089 } |
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1090 else |
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1091 { |
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1092 return false; |
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1093 } |
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1094 } |
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1095 |
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1096 |
311 | 1097 static bool ParseAnonymizationRequest(Removals& removals, |
1098 Replacements& replacements, | |
1099 bool& removePrivateTags, | |
316
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1100 RestApi::PostCall& call) |
311 | 1101 { |
316
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1102 RETRIEVE_CONTEXT(call); |
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1103 |
311 | 1104 removePrivateTags = true; |
1105 | |
1106 Json::Value request; | |
1107 if (call.ParseJsonRequest(request) && | |
1108 request.isObject()) | |
1109 { | |
1110 Json::Value keepPart = Json::arrayValue; | |
312 | 1111 Json::Value removalsPart = Json::arrayValue; |
1112 Json::Value replacementsPart = Json::objectValue; | |
1113 | |
311 | 1114 if (request.isMember("Keep")) |
1115 { | |
1116 keepPart = request["Keep"]; | |
1117 } | |
1118 | |
1119 if (request.isMember("KeepPrivateTags")) | |
1120 { | |
1121 removePrivateTags = false; | |
1122 } | |
1123 | |
312 | 1124 if (request.isMember("Replace")) |
1125 { | |
1126 replacementsPart = request["Replace"]; | |
1127 } | |
1128 | |
311 | 1129 Removals toKeep; |
1130 ParseRemovals(toKeep, keepPart); | |
1131 | |
1132 SetupAnonymization(removals, replacements); | |
1133 | |
1134 for (Removals::iterator it = toKeep.begin(); it != toKeep.end(); it++) | |
1135 { | |
1136 removals.erase(*it); | |
1137 } | |
1138 | |
312 | 1139 Removals additionalRemovals; |
1140 ParseRemovals(additionalRemovals, removalsPart); | |
1141 | |
1142 for (Removals::iterator it = additionalRemovals.begin(); | |
1143 it != additionalRemovals.end(); it++) | |
1144 { | |
321 | 1145 removals.insert(*it); |
312 | 1146 } |
1147 | |
1148 ParseReplacements(replacements, replacementsPart); | |
1149 | |
316
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1150 // Generate random Patient's Name if none is specified |
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1151 if (replacements.find(DicomTag(0x0010, 0x0010)) == replacements.end()) |
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1152 { |
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1153 replacements.insert(std::make_pair(DicomTag(0x0010, 0x0010), GeneratePatientName(context))); |
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1154 } |
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1155 |
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1156 // Generate random Patient's ID if none is specified |
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1157 if (replacements.find(DICOM_TAG_PATIENT_ID) == replacements.end()) |
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1158 { |
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1159 replacements.insert(std::make_pair(DICOM_TAG_PATIENT_ID, |
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1160 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient))); |
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1161 } |
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1162 |
311 | 1163 return true; |
1164 } | |
1165 else | |
1166 { | |
1167 return false; | |
1168 } | |
1169 } | |
1170 | |
1171 | |
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1172 static void AnonymizeOrModifyInstance(Removals& removals, |
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1173 Replacements& replacements, |
314 | 1174 bool removePrivateTags, |
1175 RestApi::PostCall& call) | |
302
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1176 { |
315 | 1177 boost::mutex::scoped_lock lock(cacheMutex_); |
302
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1178 RETRIEVE_CONTEXT(call); |
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1179 |
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1180 std::string id = call.GetUriComponent("id", ""); |
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1181 ParsedDicomFile& dicom = context.GetDicomFile(id); |
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1182 |
314 | 1183 std::auto_ptr<ParsedDicomFile> modified(dicom.Clone()); |
1184 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags); | |
1185 modified->Answer(call.GetOutput()); | |
1186 } | |
1187 | |
1188 | |
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1189 static bool RetrieveMappedUid(ParsedDicomFile& dicom, |
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1190 DicomRootLevel level, |
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1191 Replacements& replacements, |
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1192 UidMap& uidMap) |
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1193 { |
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1194 std::auto_ptr<DicomTag> tag; |
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1195 if (level == DicomRootLevel_Series) |
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1196 { |
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1197 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID)); |
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1198 } |
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1199 else |
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1200 { |
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1201 assert(level == DicomRootLevel_Study); |
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1202 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID)); |
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1203 } |
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1204 |
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1205 std::string original; |
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1206 if (!dicom.GetTagValue(original, *tag)) |
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1207 { |
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1208 throw OrthancException(ErrorCode_InternalError); |
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1209 } |
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1210 |
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1211 std::string mapped; |
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1212 bool isNew; |
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1213 |
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1214 UidMap::const_iterator previous = uidMap.find(std::make_pair(level, original)); |
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1215 if (previous == uidMap.end()) |
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1216 { |
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1217 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level); |
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1218 uidMap.insert(std::make_pair(std::make_pair(level, original), mapped)); |
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1219 isNew = true; |
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1220 } |
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1221 else |
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1222 { |
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1223 mapped = previous->second; |
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1224 isNew = false; |
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1225 } |
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1226 |
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1227 replacements[*tag] = mapped; |
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1228 return isNew; |
348
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1229 } |
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1230 |
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1231 |
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1232 static void AnonymizeOrModifyResource(Removals& removals, |
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1233 Replacements& replacements, |
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1234 bool removePrivateTags, |
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1235 MetadataType metadataType, |
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1236 ChangeType changeType, |
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1237 ResourceType resourceType, |
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1238 RestApi::PostCall& call) |
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1239 { |
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1240 typedef std::list<std::string> Instances; |
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1241 |
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1242 bool isFirst = true; |
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1243 Json::Value result(Json::objectValue); |
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1244 |
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1245 boost::mutex::scoped_lock lock(cacheMutex_); |
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1246 RETRIEVE_CONTEXT(call); |
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1247 |
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1248 Instances instances; |
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1249 std::string id = call.GetUriComponent("id", ""); |
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1250 context.GetIndex().GetChildInstances(instances, id); |
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1251 |
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1252 if (instances.size() == 0) |
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1253 { |
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1254 return; |
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1255 } |
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1256 |
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1257 |
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1258 /** |
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1259 * Loop over all the instances of the resource. |
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1260 **/ |
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1261 |
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1262 UidMap uidMap; |
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1263 for (Instances::const_iterator it = instances.begin(); |
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1264 it != instances.end(); it++) |
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1265 { |
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1266 LOG(INFO) << "Modifying instance " << *it; |
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1267 ParsedDicomFile& original = context.GetDicomFile(*it); |
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1268 |
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1269 bool isNewSeries = RetrieveMappedUid(original, DicomRootLevel_Series, replacements, uidMap); |
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1270 |
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1271 bool isNewStudy = false; |
348
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1272 if (resourceType == ResourceType_Study || |
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1273 resourceType == ResourceType_Patient) |
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1274 { |
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1275 isNewStudy = RetrieveMappedUid(original, DicomRootLevel_Study, replacements, uidMap); |
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1276 } |
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1277 |
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1278 /** |
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1279 * Compute the resulting DICOM instance and store it into the Orthanc store. |
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1280 **/ |
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1281 |
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1282 std::auto_ptr<ParsedDicomFile> modified(original.Clone()); |
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1283 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags); |
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1284 |
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1285 std::string modifiedInstance; |
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1286 if (context.Store(modifiedInstance, modified->GetDicom()) != StoreStatus_Success) |
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1287 { |
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1288 LOG(ERROR) << "Error while storing a modified instance " << *it; |
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1289 return; |
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1290 } |
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1291 |
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1292 |
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1293 /** |
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1294 * Record metadata information (AnonimizedFrom/ModifiedFrom). |
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1295 **/ |
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1296 |
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1297 DicomInstanceHasher modifiedHasher = modified->GetHasher(); |
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1298 DicomInstanceHasher originalHasher = original.GetHasher(); |
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1299 |
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1300 if (isNewSeries) |
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1301 { |
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1302 context.GetIndex().SetMetadata(modifiedHasher.HashSeries(), |
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1303 metadataType, originalHasher.HashSeries()); |
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1304 } |
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1305 |
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1306 if (isNewStudy) |
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1307 { |
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1308 context.GetIndex().SetMetadata(modifiedHasher.HashStudy(), |
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1309 metadataType, originalHasher.HashStudy()); |
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1310 } |
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1311 |
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1312 assert(*it == originalHasher.HashInstance()); |
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1313 assert(modifiedInstance == modifiedHasher.HashInstance()); |
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1314 context.GetIndex().SetMetadata(modifiedInstance, metadataType, *it); |
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1315 |
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1316 |
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1317 /** |
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1318 * Compute the JSON object that is returned by the REST call. |
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1319 **/ |
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1320 |
348
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1321 if (isFirst) |
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1322 { |
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1323 std::string newId; |
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1324 |
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1325 switch (resourceType) |
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1326 { |
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1327 case ResourceType_Series: |
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1328 newId = modifiedHasher.HashSeries(); |
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1329 break; |
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1330 |
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1331 case ResourceType_Study: |
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1332 newId = modifiedHasher.HashStudy(); |
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1333 break; |
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1334 |
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1335 case ResourceType_Patient: |
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1336 newId = modifiedHasher.HashPatient(); |
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1337 break; |
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1338 |
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1339 default: |
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1340 throw OrthancException(ErrorCode_InternalError); |
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1341 } |
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1342 |
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1343 result["Type"] = ToString(resourceType); |
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1344 result["ID"] = newId; |
348
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1345 result["Path"] = GetBasePath(resourceType, newId); |
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1346 result["PatientID"] = modifiedHasher.HashPatient(); |
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1347 isFirst = false; |
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1348 } |
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1349 } |
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1350 |
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1351 call.GetOutput().AnswerJson(result); |
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1352 } |
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1353 |
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1354 |
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1355 |
314 | 1356 static void ModifyInstance(RestApi::PostCall& call) |
1357 { | |
310 | 1358 Removals removals; |
1359 Replacements replacements; | |
312 | 1360 bool removePrivateTags; |
310 | 1361 |
312 | 1362 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
304 | 1363 { |
314 | 1364 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call); |
304 | 1365 } |
306
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1366 } |
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1367 |
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1368 |
311 | 1369 static void AnonymizeInstance(RestApi::PostCall& call) |
1370 { | |
1371 Removals removals; | |
1372 Replacements replacements; | |
1373 bool removePrivateTags; | |
1374 | |
1375 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call)) | |
1376 { | |
314 | 1377 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call); |
311 | 1378 } |
1379 } | |
1380 | |
1381 | |
308
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1382 static void ModifySeriesInplace(RestApi::PostCall& call) |
306
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1383 { |
310 | 1384 Removals removals; |
1385 Replacements replacements; | |
312 | 1386 bool removePrivateTags; |
308
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1387 |
312 | 1388 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
308
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1389 { |
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1390 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, |
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1391 MetadataType_ModifiedFrom, ChangeType_ModifiedSeries, |
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1392 ResourceType_Series, call); |
316
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1393 } |
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1394 } |
315 | 1395 |
308
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1396 |
316
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1397 static void AnonymizeSeriesInplace(RestApi::PostCall& call) |
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1398 { |
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1399 Removals removals; |
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1400 Replacements replacements; |
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1401 bool removePrivateTags; |
308
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1402 |
316
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1403 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call)) |
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1404 { |
349
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1405 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, |
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1406 MetadataType_AnonymizedFrom, ChangeType_AnonymizedSeries, |
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1407 ResourceType_Series, call); |
308
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1408 } |
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1409 } |
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1410 |
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1411 |
316
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1412 static void ModifyStudyInplace(RestApi::PostCall& call) |
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1413 { |
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1414 Removals removals; |
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1415 Replacements replacements; |
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1416 bool removePrivateTags; |
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1417 |
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1418 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
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1419 { |
349
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1420 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, |
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1421 MetadataType_ModifiedFrom, ChangeType_ModifiedStudy, |
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1422 ResourceType_Study, call); |
316
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1423 } |
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1424 } |
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1425 |
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1426 |
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1427 static void AnonymizeStudyInplace(RestApi::PostCall& call) |
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1428 { |
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1429 Removals removals; |
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1430 Replacements replacements; |
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1431 bool removePrivateTags; |
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1432 |
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1433 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call)) |
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1434 { |
349
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1435 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, |
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1436 MetadataType_AnonymizedFrom, ChangeType_AnonymizedStudy, |
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1437 ResourceType_Study, call); |
316
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1438 } |
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1439 } |
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1440 |
308
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1441 |
351 | 1442 static void ModifyPatientInplace(RestApi::PostCall& call) |
1443 { | |
1444 Removals removals; | |
1445 Replacements replacements; | |
1446 bool removePrivateTags; | |
1447 | |
1448 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) | |
1449 { | |
1450 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, | |
1451 MetadataType_ModifiedFrom, ChangeType_ModifiedPatient, | |
1452 ResourceType_Patient, call); | |
1453 } | |
1454 } | |
1455 | |
1456 | |
1457 static void AnonymizePatientInplace(RestApi::PostCall& call) | |
1458 { | |
1459 Removals removals; | |
1460 Replacements replacements; | |
1461 bool removePrivateTags; | |
1462 | |
1463 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call)) | |
1464 { | |
1465 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, | |
1466 MetadataType_AnonymizedFrom, ChangeType_AnonymizedPatient, | |
1467 ResourceType_Patient, call); | |
1468 } | |
1469 } | |
1470 | |
1471 | |
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1472 |
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1473 // Registration of the various REST handlers -------------------------------- |
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1474 |
230 | 1475 OrthancRestApi::OrthancRestApi(ServerContext& context) : |
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1476 context_(context) |
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1477 { |
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1478 GetListOfDicomModalities(modalities_); |
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1479 |
211 | 1480 Register("/", ServeRoot); |
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1481 Register("/system", GetSystemInformation); |
238 | 1482 Register("/statistics", GetStatistics); |
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1483 Register("/changes", GetChanges); |
237
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1484 Register("/exports", GetExports); |
211 | 1485 |
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1486 Register("/instances", UploadDicomFile); |
211 | 1487 Register("/instances", ListResources<ResourceType_Instance>); |
1488 Register("/patients", ListResources<ResourceType_Patient>); | |
1489 Register("/series", ListResources<ResourceType_Series>); | |
1490 Register("/studies", ListResources<ResourceType_Study>); | |
212 | 1491 |
1492 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); | |
1493 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); | |
1494 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); | |
1495 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); | |
1496 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); | |
1497 Register("/series/{id}", GetSingleResource<ResourceType_Series>); | |
1498 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); | |
1499 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); | |
250
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1500 |
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1501 Register("/patients/{id}/archive", GetArchive<ResourceType_Patient>); |
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1502 Register("/studies/{id}/archive", GetArchive<ResourceType_Study>); |
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1503 Register("/series/{id}/archive", GetArchive<ResourceType_Series>); |
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1504 |
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1505 Register("/patients/{id}/protected", IsProtectedPatient); |
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1506 Register("/patients/{id}/protected", SetPatientProtection); |
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1507 Register("/instances/{id}/file", GetInstanceFile); |
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1508 Register("/instances/{id}/tags", GetInstanceTags<false>); |
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1509 Register("/instances/{id}/simplified-tags", GetInstanceTags<true>); |
214 | 1510 Register("/instances/{id}/frames", ListFrames); |
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1511 Register("/instances/{id}/content/*", GetRawContent); |
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1512 |
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1513 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
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1514 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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1515 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
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1516 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
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1517 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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1518 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
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1519 |
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1520 Register("/modalities", ListModalities); |
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1521 Register("/modalities/{id}", ListModalityOperations); |
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1522 Register("/modalities/{id}/find-patient", DicomFindPatient); |
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1523 Register("/modalities/{id}/find-study", DicomFindStudy); |
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1524 Register("/modalities/{id}/find-series", DicomFindSeries); |
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1525 Register("/modalities/{id}/find", DicomFind); |
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1526 Register("/modalities/{id}/store", DicomStore); |
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1527 |
304 | 1528 Register("/instances/{id}/modify", ModifyInstance); |
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1529 Register("/series/{id}/modify", ModifySeriesInplace); |
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1530 Register("/studies/{id}/modify", ModifyStudyInplace); |
351 | 1531 Register("/patients/{id}/modify", ModifyPatientInplace); |
311 | 1532 |
1533 Register("/instances/{id}/anonymize", AnonymizeInstance); | |
316
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1534 Register("/series/{id}/anonymize", AnonymizeSeriesInplace); |
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1535 Register("/studies/{id}/anonymize", AnonymizeStudyInplace); |
351 | 1536 Register("/patients/{id}/anonymize", AnonymizePatientInplace); |
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1537 |
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1538 Register("/tools/generate-uid", GenerateUid); |
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1539 } |
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1540 } |