Mercurial > hg > orthanc
annotate OrthancServer/Sources/Database/SQLiteDatabaseWrapper.cpp @ 4602:cfdd1f59ff6f db-changes
fix OrthancCDatabasePlugin.h
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 22 Mar 2021 19:25:27 +0100 |
parents | cc64385593ef |
children | f75c63aa9de0 |
rev | line source |
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183 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
183 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "SQLiteDatabaseWrapper.h" |
183 | 36 |
4045 | 37 #include "../../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
38 #include "../../../OrthancFramework/Sources/Logging.h" | |
39 #include "../../../OrthancFramework/Sources/SQLite/Transaction.h" | |
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40 #include "../Search/ISqlLookupFormatter.h" |
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41 #include "../ServerToolbox.h" |
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42 #include "Compatibility/ICreateInstance.h" |
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43 #include "Compatibility/IGetChildrenMetadata.h" |
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44 #include "Compatibility/ILookupResourceAndParent.h" |
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45 #include "Compatibility/ISetResourcesContent.h" |
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46 #include "VoidDatabaseListener.h" |
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47 |
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48 #include <OrthancServerResources.h> |
183 | 49 |
50 #include <stdio.h> | |
1247 | 51 #include <boost/lexical_cast.hpp> |
183 | 52 |
53 namespace Orthanc | |
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54 { |
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55 class SQLiteDatabaseWrapper::LookupFormatter : public ISqlLookupFormatter |
183 | 56 { |
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57 private: |
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58 std::list<std::string> values_; |
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59 |
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60 public: |
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61 virtual std::string GenerateParameter(const std::string& value) ORTHANC_OVERRIDE |
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62 { |
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63 values_.push_back(value); |
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64 return "?"; |
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65 } |
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66 |
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67 virtual std::string FormatResourceType(ResourceType level) ORTHANC_OVERRIDE |
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68 { |
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69 return boost::lexical_cast<std::string>(level); |
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70 } |
183 | 71 |
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72 virtual std::string FormatWildcardEscape() ORTHANC_OVERRIDE |
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73 { |
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74 return "ESCAPE '\\'"; |
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75 } |
1158 | 76 |
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77 void Bind(SQLite::Statement& statement) const |
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78 { |
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79 size_t pos = 0; |
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80 |
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81 for (std::list<std::string>::const_iterator |
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82 it = values_.begin(); it != values_.end(); ++it, pos++) |
1158 | 83 { |
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84 statement.BindString(pos, *it); |
1158 | 85 } |
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86 } |
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87 }; |
1158 | 88 |
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89 |
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90 class SQLiteDatabaseWrapper::SignalRemainingAncestor : public SQLite::IScalarFunction |
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91 { |
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92 private: |
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93 bool hasRemainingAncestor_; |
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94 std::string remainingPublicId_; |
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95 ResourceType remainingType_; |
660 | 96 |
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97 public: |
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98 SignalRemainingAncestor() : |
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99 hasRemainingAncestor_(false) |
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100 { |
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101 } |
183 | 102 |
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103 void Reset() |
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104 { |
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105 hasRemainingAncestor_ = false; |
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106 } |
183 | 107 |
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108 virtual const char* GetName() const ORTHANC_OVERRIDE |
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109 { |
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110 return "SignalRemainingAncestor"; |
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111 } |
183 | 112 |
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113 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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114 { |
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115 return 2; |
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116 } |
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117 |
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118 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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119 { |
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120 CLOG(TRACE, SQLITE) << "There exists a remaining ancestor with public ID \"" |
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121 << context.GetStringValue(0) << "\" of type " |
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122 << context.GetIntValue(1); |
183 | 123 |
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124 if (!hasRemainingAncestor_ || |
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125 remainingType_ >= context.GetIntValue(1)) |
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126 { |
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127 hasRemainingAncestor_ = true; |
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128 remainingPublicId_ = context.GetStringValue(0); |
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129 remainingType_ = static_cast<ResourceType>(context.GetIntValue(1)); |
183 | 130 } |
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131 } |
183 | 132 |
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133 bool HasRemainingAncestor() const |
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134 { |
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135 return hasRemainingAncestor_; |
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136 } |
183 | 137 |
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138 const std::string& GetRemainingAncestorId() const |
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139 { |
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140 assert(hasRemainingAncestor_); |
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141 return remainingPublicId_; |
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142 } |
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143 |
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144 ResourceType GetRemainingAncestorType() const |
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145 { |
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146 assert(hasRemainingAncestor_); |
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147 return remainingType_; |
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148 } |
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149 }; |
183 | 150 |
151 | |
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152 class SQLiteDatabaseWrapper::TransactionBase : |
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153 public SQLiteDatabaseWrapper::UnitTestsTransaction, |
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154 public Compatibility::ICreateInstance, |
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155 public Compatibility::IGetChildrenMetadata, |
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156 public Compatibility::ILookupResourceAndParent, |
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157 public Compatibility::ISetResourcesContent |
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158 { |
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159 private: |
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160 void AnswerLookup(std::list<std::string>& resourcesId, |
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161 std::list<std::string>& instancesId, |
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162 ResourceType level) |
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163 { |
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164 resourcesId.clear(); |
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165 instancesId.clear(); |
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166 |
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167 std::unique_ptr<SQLite::Statement> statement; |
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168 |
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169 switch (level) |
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170 { |
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171 case ResourceType_Patient: |
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172 { |
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173 statement.reset( |
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174 new SQLite::Statement( |
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175 db_, SQLITE_FROM_HERE, |
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176 "SELECT patients.publicId, instances.publicID FROM Lookup AS patients " |
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177 "INNER JOIN Resources studies ON patients.internalId=studies.parentId " |
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178 "INNER JOIN Resources series ON studies.internalId=series.parentId " |
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179 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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180 "GROUP BY patients.publicId")); |
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181 |
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182 break; |
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183 } |
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184 |
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185 case ResourceType_Study: |
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186 { |
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187 statement.reset( |
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188 new SQLite::Statement( |
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189 db_, SQLITE_FROM_HERE, |
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190 "SELECT studies.publicId, instances.publicID FROM Lookup AS studies " |
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191 "INNER JOIN Resources series ON studies.internalId=series.parentId " |
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192 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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193 "GROUP BY studies.publicId")); |
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194 |
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195 break; |
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196 } |
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197 |
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198 case ResourceType_Series: |
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199 { |
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200 statement.reset( |
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201 new SQLite::Statement( |
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202 db_, SQLITE_FROM_HERE, |
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203 "SELECT series.publicId, instances.publicID FROM Lookup AS series " |
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204 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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205 "GROUP BY series.publicId")); |
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206 |
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207 break; |
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208 } |
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209 |
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210 case ResourceType_Instance: |
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211 { |
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212 statement.reset( |
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213 new SQLite::Statement( |
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214 db_, SQLITE_FROM_HERE, "SELECT publicId, publicId FROM Lookup")); |
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215 |
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216 break; |
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217 } |
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218 |
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219 default: |
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220 throw OrthancException(ErrorCode_InternalError); |
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221 } |
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222 |
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223 assert(statement.get() != NULL); |
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224 |
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225 while (statement->Step()) |
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226 { |
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227 resourcesId.push_back(statement->ColumnString(0)); |
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228 instancesId.push_back(statement->ColumnString(1)); |
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229 } |
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230 } |
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231 |
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232 |
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233 void ClearTable(const std::string& tableName) |
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234 { |
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235 db_.Execute("DELETE FROM " + tableName); |
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236 } |
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237 |
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238 |
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239 void GetChangesInternal(std::list<ServerIndexChange>& target, |
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240 bool& done, |
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241 SQLite::Statement& s, |
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242 uint32_t maxResults) |
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243 { |
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244 target.clear(); |
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245 |
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246 while (target.size() < maxResults && s.Step()) |
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247 { |
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248 int64_t seq = s.ColumnInt64(0); |
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249 ChangeType changeType = static_cast<ChangeType>(s.ColumnInt(1)); |
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250 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(3)); |
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251 const std::string& date = s.ColumnString(4); |
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252 |
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253 int64_t internalId = s.ColumnInt64(2); |
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254 std::string publicId = GetPublicId(internalId); |
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255 |
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256 target.push_back(ServerIndexChange(seq, changeType, resourceType, publicId, date)); |
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257 } |
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258 |
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259 done = !(target.size() == maxResults && s.Step()); |
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260 } |
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261 |
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262 |
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263 void GetExportedResourcesInternal(std::list<ExportedResource>& target, |
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264 bool& done, |
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265 SQLite::Statement& s, |
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266 uint32_t maxResults) |
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267 { |
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268 target.clear(); |
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269 |
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270 while (target.size() < maxResults && s.Step()) |
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271 { |
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272 int64_t seq = s.ColumnInt64(0); |
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273 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(1)); |
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274 std::string publicId = s.ColumnString(2); |
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275 |
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276 ExportedResource resource(seq, |
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277 resourceType, |
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278 publicId, |
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279 s.ColumnString(3), // modality |
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280 s.ColumnString(8), // date |
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281 s.ColumnString(4), // patient ID |
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282 s.ColumnString(5), // study instance UID |
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283 s.ColumnString(6), // series instance UID |
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284 s.ColumnString(7)); // sop instance UID |
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285 |
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286 target.push_back(resource); |
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287 } |
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288 |
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289 done = !(target.size() == maxResults && s.Step()); |
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290 } |
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291 |
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292 |
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293 void GetChildren(std::list<std::string>& childrenPublicIds, |
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294 int64_t id) |
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295 { |
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296 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
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297 s.BindInt64(0, id); |
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298 |
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299 childrenPublicIds.clear(); |
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300 while (s.Step()) |
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301 { |
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302 childrenPublicIds.push_back(s.ColumnString(0)); |
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303 } |
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304 } |
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305 |
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306 boost::mutex::scoped_lock lock_; |
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307 IDatabaseListener& listener_; |
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308 SignalRemainingAncestor& signalRemainingAncestor_; |
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309 |
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310 public: |
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311 TransactionBase(boost::mutex& mutex, |
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312 SQLite::Connection& db, |
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313 IDatabaseListener& listener, |
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314 SignalRemainingAncestor& signalRemainingAncestor) : |
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315 UnitTestsTransaction(db), |
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316 lock_(mutex), |
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317 listener_(listener), |
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318 signalRemainingAncestor_(signalRemainingAncestor) |
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319 { |
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320 } |
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321 |
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322 IDatabaseListener& GetListener() const |
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323 { |
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324 return listener_; |
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325 } |
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326 |
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327 |
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328 virtual void AddAttachment(int64_t id, |
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329 const FileInfo& attachment) ORTHANC_OVERRIDE |
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330 { |
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331 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO AttachedFiles VALUES(?, ?, ?, ?, ?, ?, ?, ?)"); |
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332 s.BindInt64(0, id); |
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333 s.BindInt(1, attachment.GetContentType()); |
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334 s.BindString(2, attachment.GetUuid()); |
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335 s.BindInt64(3, attachment.GetCompressedSize()); |
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336 s.BindInt64(4, attachment.GetUncompressedSize()); |
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337 s.BindInt(5, attachment.GetCompressionType()); |
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338 s.BindString(6, attachment.GetUncompressedMD5()); |
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339 s.BindString(7, attachment.GetCompressedMD5()); |
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340 s.Run(); |
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341 } |
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342 |
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343 |
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344 virtual void ApplyLookupResources(std::list<std::string>& resourcesId, |
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345 std::list<std::string>* instancesId, |
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346 const std::vector<DatabaseConstraint>& lookup, |
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347 ResourceType queryLevel, |
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348 size_t limit) ORTHANC_OVERRIDE |
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349 { |
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350 LookupFormatter formatter; |
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351 |
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352 std::string sql; |
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353 LookupFormatter::Apply(sql, formatter, lookup, queryLevel, limit); |
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354 |
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355 sql = "CREATE TEMPORARY TABLE Lookup AS " + sql; |
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356 |
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357 { |
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358 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DROP TABLE IF EXISTS Lookup"); |
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359 s.Run(); |
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360 } |
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361 |
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362 { |
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363 SQLite::Statement statement(db_, sql); |
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364 formatter.Bind(statement); |
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365 statement.Run(); |
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366 } |
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367 |
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368 if (instancesId != NULL) |
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369 { |
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370 AnswerLookup(resourcesId, *instancesId, queryLevel); |
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371 } |
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372 else |
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373 { |
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374 resourcesId.clear(); |
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375 |
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376 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Lookup"); |
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377 |
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378 while (s.Step()) |
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379 { |
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380 resourcesId.push_back(s.ColumnString(0)); |
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381 } |
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382 } |
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383 } |
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384 |
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385 |
4592 | 386 // From the "ICreateInstance" interface |
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387 virtual void AttachChild(int64_t parent, |
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388 int64_t child) ORTHANC_OVERRIDE |
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389 { |
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390 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); |
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391 s.BindInt64(0, parent); |
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392 s.BindInt64(1, child); |
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393 s.Run(); |
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394 } |
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395 |
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396 |
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397 virtual void ClearChanges() ORTHANC_OVERRIDE |
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398 { |
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399 ClearTable("Changes"); |
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400 } |
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401 |
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402 virtual void ClearExportedResources() ORTHANC_OVERRIDE |
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403 { |
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404 ClearTable("ExportedResources"); |
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405 } |
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406 |
1241 | 407 |
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408 virtual void ClearMainDicomTags(int64_t id) ORTHANC_OVERRIDE |
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409 { |
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410 { |
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411 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM DicomIdentifiers WHERE id=?"); |
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412 s.BindInt64(0, id); |
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413 s.Run(); |
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414 } |
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415 |
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416 { |
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417 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM MainDicomTags WHERE id=?"); |
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418 s.BindInt64(0, id); |
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419 s.Run(); |
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420 } |
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421 } |
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422 |
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423 |
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424 virtual bool CreateInstance(CreateInstanceResult& result, |
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425 int64_t& instanceId, |
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426 const std::string& patient, |
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427 const std::string& study, |
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428 const std::string& series, |
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429 const std::string& instance) ORTHANC_OVERRIDE |
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430 { |
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431 return ICreateInstance::Apply |
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432 (*this, result, instanceId, patient, study, series, instance); |
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433 } |
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434 |
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435 |
4592 | 436 // From the "ICreateInstance" interface |
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437 virtual int64_t CreateResource(const std::string& publicId, |
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438 ResourceType type) ORTHANC_OVERRIDE |
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439 { |
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440 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources VALUES(NULL, ?, ?, NULL)"); |
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441 s.BindInt(0, type); |
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442 s.BindString(1, publicId); |
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443 s.Run(); |
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444 return db_.GetLastInsertRowId(); |
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445 } |
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446 |
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447 |
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448 virtual void DeleteAttachment(int64_t id, |
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449 FileContentType attachment) ORTHANC_OVERRIDE |
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450 { |
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451 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM AttachedFiles WHERE id=? AND fileType=?"); |
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452 s.BindInt64(0, id); |
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453 s.BindInt(1, attachment); |
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454 s.Run(); |
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455 } |
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456 |
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457 |
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458 virtual void DeleteMetadata(int64_t id, |
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459 MetadataType type) ORTHANC_OVERRIDE |
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460 { |
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461 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Metadata WHERE id=? and type=?"); |
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462 s.BindInt64(0, id); |
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463 s.BindInt(1, type); |
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464 s.Run(); |
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465 } |
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466 |
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467 |
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468 virtual void DeleteResource(int64_t id) ORTHANC_OVERRIDE |
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469 { |
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470 signalRemainingAncestor_.Reset(); |
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471 |
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472 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Resources WHERE internalId=?"); |
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473 s.BindInt64(0, id); |
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474 s.Run(); |
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475 |
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476 if (signalRemainingAncestor_.HasRemainingAncestor()) |
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477 { |
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478 listener_.SignalRemainingAncestor(signalRemainingAncestor_.GetRemainingAncestorType(), |
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479 signalRemainingAncestor_.GetRemainingAncestorId()); |
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480 } |
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481 } |
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482 |
183 | 483 |
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484 virtual void GetAllMetadata(std::map<MetadataType, std::string>& target, |
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485 int64_t id) ORTHANC_OVERRIDE |
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486 { |
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487 target.clear(); |
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488 |
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489 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type, value FROM Metadata WHERE id=?"); |
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490 s.BindInt64(0, id); |
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491 |
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492 while (s.Step()) |
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493 { |
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494 MetadataType key = static_cast<MetadataType>(s.ColumnInt(0)); |
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495 target[key] = s.ColumnString(1); |
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496 } |
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497 } |
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498 |
183 | 499 |
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500 virtual void GetAllPublicIds(std::list<std::string>& target, |
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501 ResourceType resourceType) ORTHANC_OVERRIDE |
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502 { |
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503 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=?"); |
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504 s.BindInt(0, resourceType); |
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505 |
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506 target.clear(); |
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507 while (s.Step()) |
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508 { |
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509 target.push_back(s.ColumnString(0)); |
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510 } |
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511 } |
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512 |
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513 |
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514 virtual void GetAllPublicIds(std::list<std::string>& target, |
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515 ResourceType resourceType, |
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516 size_t since, |
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517 size_t limit) ORTHANC_OVERRIDE |
183 | 518 { |
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519 if (limit == 0) |
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520 { |
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521 target.clear(); |
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522 return; |
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523 } |
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524 |
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525 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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526 "SELECT publicId FROM Resources WHERE " |
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527 "resourceType=? LIMIT ? OFFSET ?"); |
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528 s.BindInt(0, resourceType); |
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529 s.BindInt64(1, limit); |
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530 s.BindInt64(2, since); |
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531 |
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532 target.clear(); |
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533 while (s.Step()) |
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534 { |
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535 target.push_back(s.ColumnString(0)); |
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536 } |
183 | 537 } |
538 | |
539 | |
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540 virtual void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
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541 bool& done /*out*/, |
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542 int64_t since, |
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543 uint32_t maxResults) ORTHANC_OVERRIDE |
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544 { |
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545 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes WHERE seq>? ORDER BY seq LIMIT ?"); |
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546 s.BindInt64(0, since); |
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547 s.BindInt(1, maxResults + 1); |
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548 GetChangesInternal(target, done, s, maxResults); |
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549 } |
183 | 550 |
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551 |
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552 virtual void GetChildrenMetadata(std::list<std::string>& target, |
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553 int64_t resourceId, |
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554 MetadataType metadata) ORTHANC_OVERRIDE |
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555 { |
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556 IGetChildrenMetadata::Apply(*this, target, resourceId, metadata); |
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557 } |
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558 |
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559 |
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560 virtual void GetChildrenInternalId(std::list<int64_t>& target, |
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561 int64_t id) ORTHANC_OVERRIDE |
183 | 562 { |
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563 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.internalId FROM Resources AS a, Resources AS b " |
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564 "WHERE a.parentId = b.internalId AND b.internalId = ?"); |
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565 s.BindInt64(0, id); |
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566 |
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567 target.clear(); |
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568 |
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569 while (s.Step()) |
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570 { |
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571 target.push_back(s.ColumnInt64(0)); |
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572 } |
183 | 573 } |
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574 |
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575 |
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576 virtual void GetChildrenPublicId(std::list<std::string>& target, |
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577 int64_t id) ORTHANC_OVERRIDE |
183 | 578 { |
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579 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " |
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580 "WHERE a.parentId = b.internalId AND b.internalId = ?"); |
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581 s.BindInt64(0, id); |
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582 |
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583 target.clear(); |
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584 |
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585 while (s.Step()) |
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586 { |
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587 target.push_back(s.ColumnString(0)); |
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588 } |
183 | 589 } |
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590 |
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591 |
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592 virtual void GetExportedResources(std::list<ExportedResource>& target, |
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593 bool& done, |
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594 int64_t since, |
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|
595 uint32_t maxResults) ORTHANC_OVERRIDE |
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596 { |
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597 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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598 "SELECT * FROM ExportedResources WHERE seq>? ORDER BY seq LIMIT ?"); |
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599 s.BindInt64(0, since); |
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600 s.BindInt(1, maxResults + 1); |
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601 GetExportedResourcesInternal(target, done, s, maxResults); |
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602 } |
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603 |
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604 |
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605 virtual void GetLastChange(std::list<ServerIndexChange>& target /*out*/) ORTHANC_OVERRIDE |
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606 { |
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607 bool done; // Ignored |
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608 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes ORDER BY seq DESC LIMIT 1"); |
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609 GetChangesInternal(target, done, s, 1); |
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610 } |
183 | 611 |
612 | |
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613 int64_t GetLastChangeIndex() ORTHANC_OVERRIDE |
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614 { |
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615 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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616 "SELECT seq FROM sqlite_sequence WHERE name='Changes'"); |
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617 |
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618 if (s.Step()) |
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619 { |
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620 int64_t c = s.ColumnInt(0); |
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621 assert(!s.Step()); |
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622 return c; |
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623 } |
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624 else |
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625 { |
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626 // No change has been recorded so far in the database |
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627 return 0; |
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628 } |
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629 } |
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630 |
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631 |
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632 virtual void GetLastExportedResource(std::list<ExportedResource>& target) ORTHANC_OVERRIDE |
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633 { |
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634 bool done; // Ignored |
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635 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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636 "SELECT * FROM ExportedResources ORDER BY seq DESC LIMIT 1"); |
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637 GetExportedResourcesInternal(target, done, s, 1); |
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638 } |
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639 |
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640 |
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641 virtual void GetMainDicomTags(DicomMap& map, |
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642 int64_t id) ORTHANC_OVERRIDE |
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643 { |
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644 map.Clear(); |
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645 |
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646 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM MainDicomTags WHERE id=?"); |
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647 s.BindInt64(0, id); |
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648 while (s.Step()) |
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649 { |
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650 map.SetValue(s.ColumnInt(1), |
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651 s.ColumnInt(2), |
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652 s.ColumnString(3), false); |
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653 } |
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654 } |
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655 |
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|
656 |
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657 virtual std::string GetPublicId(int64_t resourceId) ORTHANC_OVERRIDE |
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658 { |
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659 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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660 "SELECT publicId FROM Resources WHERE internalId=?"); |
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661 s.BindInt64(0, resourceId); |
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|
662 |
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663 if (s.Step()) |
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|
664 { |
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665 return s.ColumnString(0); |
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666 } |
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667 else |
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668 { |
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669 throw OrthancException(ErrorCode_UnknownResource); |
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670 } |
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671 } |
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changeset
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672 |
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changeset
|
673 |
4595
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added OrthancPluginRegisterDatabaseBackendV3() to plugin sdk
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|
674 virtual uint64_t GetResourcesCount(ResourceType resourceType) ORTHANC_OVERRIDE |
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675 { |
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676 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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677 "SELECT COUNT(*) FROM Resources WHERE resourceType=?"); |
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678 s.BindInt(0, resourceType); |
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|
679 |
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680 if (!s.Step()) |
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681 { |
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682 return 0; |
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683 } |
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684 else |
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685 { |
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686 int64_t c = s.ColumnInt(0); |
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687 assert(!s.Step()); |
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688 return c; |
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689 } |
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690 } |
183 | 691 |
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|
692 |
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693 virtual ResourceType GetResourceType(int64_t resourceId) ORTHANC_OVERRIDE |
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694 { |
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695 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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696 "SELECT resourceType FROM Resources WHERE internalId=?"); |
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697 s.BindInt64(0, resourceId); |
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|
698 |
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699 if (s.Step()) |
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700 { |
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701 return static_cast<ResourceType>(s.ColumnInt(0)); |
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702 } |
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703 else |
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704 { |
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705 throw OrthancException(ErrorCode_UnknownResource); |
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706 } |
3809
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707 } |
4591
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708 |
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709 |
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710 virtual uint64_t GetTotalCompressedSize() ORTHANC_OVERRIDE |
218 | 711 { |
4591
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712 // Old SQL query that was used in Orthanc <= 1.5.0: |
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713 // SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(compressedSize) FROM AttachedFiles"); |
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714 |
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715 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalIntegers WHERE key=0"); |
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716 s.Run(); |
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717 return static_cast<uint64_t>(s.ColumnInt64(0)); |
218 | 718 } |
183 | 719 |
720 | |
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721 virtual uint64_t GetTotalUncompressedSize() ORTHANC_OVERRIDE |
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722 { |
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723 // Old SQL query that was used in Orthanc <= 1.5.0: |
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724 // SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(uncompressedSize) FROM AttachedFiles"); |
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725 |
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726 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalIntegers WHERE key=1"); |
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727 s.Run(); |
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728 return static_cast<uint64_t>(s.ColumnInt64(0)); |
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729 } |
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730 |
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731 |
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732 virtual bool IsDiskSizeAbove(uint64_t threshold) ORTHANC_OVERRIDE |
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733 { |
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734 return GetTotalCompressedSize() > threshold; |
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735 } |
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736 |
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737 |
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738 virtual bool IsExistingResource(int64_t internalId) ORTHANC_OVERRIDE |
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739 { |
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740 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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741 "SELECT * FROM Resources WHERE internalId=?"); |
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742 s.BindInt64(0, internalId); |
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743 return s.Step(); |
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744 } |
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745 |
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746 |
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747 virtual bool IsProtectedPatient(int64_t internalId) ORTHANC_OVERRIDE |
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748 { |
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749 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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750 "SELECT * FROM PatientRecyclingOrder WHERE patientId = ?"); |
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751 s.BindInt64(0, internalId); |
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752 return !s.Step(); |
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753 } |
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754 |
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755 |
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756 virtual void ListAvailableAttachments(std::set<FileContentType>& target, |
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757 int64_t id) ORTHANC_OVERRIDE |
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758 { |
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759 target.clear(); |
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760 |
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761 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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762 "SELECT fileType FROM AttachedFiles WHERE id=?"); |
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763 s.BindInt64(0, id); |
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764 |
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765 while (s.Step()) |
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766 { |
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767 target.insert(static_cast<FileContentType>(s.ColumnInt(0))); |
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768 } |
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769 } |
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770 |
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771 |
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772 virtual void LogChange(int64_t internalId, |
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773 const ServerIndexChange& change) ORTHANC_OVERRIDE |
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774 { |
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775 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Changes VALUES(NULL, ?, ?, ?, ?)"); |
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776 s.BindInt(0, change.GetChangeType()); |
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777 s.BindInt64(1, internalId); |
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778 s.BindInt(2, change.GetResourceType()); |
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779 s.BindString(3, change.GetDate()); |
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780 s.Run(); |
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781 } |
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782 |
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783 |
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784 virtual void LogExportedResource(const ExportedResource& resource) ORTHANC_OVERRIDE |
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785 { |
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786 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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787 "INSERT INTO ExportedResources VALUES(NULL, ?, ?, ?, ?, ?, ?, ?, ?)"); |
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788 |
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789 s.BindInt(0, resource.GetResourceType()); |
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790 s.BindString(1, resource.GetPublicId()); |
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791 s.BindString(2, resource.GetModality()); |
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792 s.BindString(3, resource.GetPatientId()); |
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793 s.BindString(4, resource.GetStudyInstanceUid()); |
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794 s.BindString(5, resource.GetSeriesInstanceUid()); |
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795 s.BindString(6, resource.GetSopInstanceUid()); |
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796 s.BindString(7, resource.GetDate()); |
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797 s.Run(); |
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798 } |
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799 |
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800 |
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801 virtual bool LookupAttachment(FileInfo& attachment, |
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802 int64_t id, |
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803 FileContentType contentType) ORTHANC_OVERRIDE |
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804 { |
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805 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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806 "SELECT uuid, uncompressedSize, compressionType, compressedSize, " |
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807 "uncompressedMD5, compressedMD5 FROM AttachedFiles WHERE id=? AND fileType=?"); |
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808 s.BindInt64(0, id); |
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809 s.BindInt(1, contentType); |
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810 |
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811 if (!s.Step()) |
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812 { |
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changeset
|
813 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
814 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
815 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
816 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
817 attachment = FileInfo(s.ColumnString(0), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
818 contentType, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
819 s.ColumnInt64(1), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
820 s.ColumnString(4), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
821 static_cast<CompressionType>(s.ColumnInt(2)), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
822 s.ColumnInt64(3), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
823 s.ColumnString(5)); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
824 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
825 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
826 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
827 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
828 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
829 virtual bool LookupGlobalProperty(std::string& target, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
830 GlobalProperty property) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
831 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
832 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
833 "SELECT value FROM GlobalProperties WHERE property=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
834 s.BindInt(0, property); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
835 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
836 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
837 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
838 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
839 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
840 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
841 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
842 target = s.ColumnString(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
843 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
844 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
845 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
846 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
847 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
848 virtual bool LookupMetadata(std::string& target, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
849 int64_t id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
850 MetadataType type) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
851 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
852 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
853 "SELECT value FROM Metadata WHERE id=? AND type=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
854 s.BindInt64(0, id); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
855 s.BindInt(1, type); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
856 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
857 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
858 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
859 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
860 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
861 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
862 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
863 target = s.ColumnString(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
864 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
865 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
866 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
867 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
868 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
869 virtual bool LookupParent(int64_t& parentId, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
870 int64_t resourceId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
871 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
872 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
873 "SELECT parentId FROM Resources WHERE internalId=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
874 s.BindInt64(0, resourceId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
875 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
876 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
877 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
878 throw OrthancException(ErrorCode_UnknownResource); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
879 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
880 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
881 if (s.ColumnIsNull(0)) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
882 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
883 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
884 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
885 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
886 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
887 parentId = s.ColumnInt(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
888 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
889 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
890 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
891 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
892 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
893 virtual bool LookupResourceAndParent(int64_t& id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
894 ResourceType& type, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
895 std::string& parentPublicId, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
896 const std::string& publicId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
897 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
898 return ILookupResourceAndParent::Apply(*this, id, type, parentPublicId, publicId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
899 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
900 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
901 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
902 virtual bool LookupResource(int64_t& id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
903 ResourceType& type, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
904 const std::string& publicId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
905 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
906 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
907 "SELECT internalId, resourceType FROM Resources WHERE publicId=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
908 s.BindString(0, publicId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
909 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
910 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
911 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
912 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
913 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
914 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
915 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
916 id = s.ColumnInt(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
917 type = static_cast<ResourceType>(s.ColumnInt(1)); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
918 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
919 // Check whether there is a single resource with this public id |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
920 assert(!s.Step()); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
921 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
922 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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923 } |
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924 } |
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|
925 |
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926 |
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927 virtual bool SelectPatientToRecycle(int64_t& internalId) ORTHANC_OVERRIDE |
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928 { |
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929 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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930 "SELECT patientId FROM PatientRecyclingOrder ORDER BY seq ASC LIMIT 1"); |
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931 |
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932 if (!s.Step()) |
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933 { |
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934 // No patient remaining or all the patients are protected |
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935 return false; |
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936 } |
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937 else |
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938 { |
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939 internalId = s.ColumnInt(0); |
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940 return true; |
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941 } |
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942 } |
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943 |
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944 |
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945 virtual bool SelectPatientToRecycle(int64_t& internalId, |
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946 int64_t patientIdToAvoid) ORTHANC_OVERRIDE |
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947 { |
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948 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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949 "SELECT patientId FROM PatientRecyclingOrder " |
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950 "WHERE patientId != ? ORDER BY seq ASC LIMIT 1"); |
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951 s.BindInt64(0, patientIdToAvoid); |
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952 |
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953 if (!s.Step()) |
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954 { |
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955 // No patient remaining or all the patients are protected |
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956 return false; |
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957 } |
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958 else |
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959 { |
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960 internalId = s.ColumnInt(0); |
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961 return true; |
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962 } |
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963 } |
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964 |
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965 |
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966 virtual void SetGlobalProperty(GlobalProperty property, |
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967 const std::string& value) ORTHANC_OVERRIDE |
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968 { |
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969 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO GlobalProperties VALUES(?, ?)"); |
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970 s.BindInt(0, property); |
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971 s.BindString(1, value); |
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972 s.Run(); |
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973 } |
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974 |
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975 |
4592 | 976 // From the "ISetResourcesContent" interface |
4591
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977 virtual void SetIdentifierTag(int64_t id, |
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978 const DicomTag& tag, |
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979 const std::string& value) ORTHANC_OVERRIDE |
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980 { |
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981 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers VALUES(?, ?, ?, ?)"); |
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982 s.BindInt64(0, id); |
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983 s.BindInt(1, tag.GetGroup()); |
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984 s.BindInt(2, tag.GetElement()); |
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985 s.BindString(3, value); |
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986 s.Run(); |
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987 } |
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988 |
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989 |
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990 virtual void SetProtectedPatient(int64_t internalId, |
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991 bool isProtected) ORTHANC_OVERRIDE |
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992 { |
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993 if (isProtected) |
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994 { |
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995 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
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996 s.BindInt64(0, internalId); |
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997 s.Run(); |
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998 } |
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999 else if (IsProtectedPatient(internalId)) |
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1000 { |
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1001 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO PatientRecyclingOrder VALUES(NULL, ?)"); |
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1002 s.BindInt64(0, internalId); |
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1003 s.Run(); |
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1004 } |
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1005 else |
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1006 { |
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1007 // Nothing to do: The patient is already unprotected |
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1008 } |
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1009 } |
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1010 |
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1011 |
4592 | 1012 // From the "ISetResourcesContent" interface |
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1013 virtual void SetMainDicomTag(int64_t id, |
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1014 const DicomTag& tag, |
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1015 const std::string& value) ORTHANC_OVERRIDE |
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1016 { |
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1017 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags VALUES(?, ?, ?, ?)"); |
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1018 s.BindInt64(0, id); |
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1019 s.BindInt(1, tag.GetGroup()); |
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1020 s.BindInt(2, tag.GetElement()); |
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1021 s.BindString(3, value); |
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1022 s.Run(); |
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1023 } |
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1024 |
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1025 |
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1026 virtual void SetMetadata(int64_t id, |
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1027 MetadataType type, |
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1028 const std::string& value) ORTHANC_OVERRIDE |
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1029 { |
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1030 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO Metadata VALUES(?, ?, ?)"); |
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1031 s.BindInt64(0, id); |
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1032 s.BindInt(1, type); |
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1033 s.BindString(2, value); |
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1034 s.Run(); |
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1035 } |
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1036 |
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1037 |
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1038 virtual void SetResourcesContent(const Orthanc::ResourcesContent& content) ORTHANC_OVERRIDE |
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1039 { |
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1040 ISetResourcesContent::Apply(*this, content); |
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1041 } |
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1042 |
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1043 |
4592 | 1044 // From the "ICreateInstance" interface |
4591
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1045 virtual void TagMostRecentPatient(int64_t patient) ORTHANC_OVERRIDE |
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1046 { |
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1047 { |
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1048 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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1049 "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
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1050 s.BindInt64(0, patient); |
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1051 s.Run(); |
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1052 |
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1053 assert(db_.GetLastChangeCount() == 0 || |
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1054 db_.GetLastChangeCount() == 1); |
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1055 |
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1056 if (db_.GetLastChangeCount() == 0) |
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1057 { |
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1058 // The patient was protected, there was nothing to delete from the recycling order |
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1059 return; |
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1060 } |
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1061 } |
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1062 |
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1063 { |
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1064 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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1065 "INSERT INTO PatientRecyclingOrder VALUES(NULL, ?)"); |
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1066 s.BindInt64(0, patient); |
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1067 s.Run(); |
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1068 } |
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1069 } |
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1070 }; |
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1071 |
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1072 |
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1073 class SQLiteDatabaseWrapper::SignalFileDeleted : public SQLite::IScalarFunction |
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1074 { |
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1075 private: |
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1076 SQLiteDatabaseWrapper& sqlite_; |
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1077 |
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1078 public: |
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1079 SignalFileDeleted(SQLiteDatabaseWrapper& sqlite) : |
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1080 sqlite_(sqlite) |
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1081 { |
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1082 } |
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1083 |
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1084 virtual const char* GetName() const ORTHANC_OVERRIDE |
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1085 { |
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1086 return "SignalFileDeleted"; |
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1087 } |
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1088 |
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1089 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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1090 { |
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1091 return 7; |
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1092 } |
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1093 |
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1094 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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1095 { |
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1096 if (sqlite_.activeTransaction_ != NULL) |
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1097 { |
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1098 std::string uncompressedMD5, compressedMD5; |
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1099 |
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1100 if (!context.IsNullValue(5)) |
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1101 { |
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1102 uncompressedMD5 = context.GetStringValue(5); |
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1103 } |
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1104 |
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1105 if (!context.IsNullValue(6)) |
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1106 { |
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1107 compressedMD5 = context.GetStringValue(6); |
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1108 } |
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1109 |
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1110 FileInfo info(context.GetStringValue(0), |
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1111 static_cast<FileContentType>(context.GetIntValue(1)), |
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1112 static_cast<uint64_t>(context.GetInt64Value(2)), |
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1113 uncompressedMD5, |
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1114 static_cast<CompressionType>(context.GetIntValue(3)), |
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1115 static_cast<uint64_t>(context.GetInt64Value(4)), |
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1116 compressedMD5); |
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1117 |
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1118 sqlite_.activeTransaction_->GetListener().SignalAttachmentDeleted(info); |
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1119 } |
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1120 } |
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1121 }; |
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1122 |
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1123 |
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1124 class SQLiteDatabaseWrapper::SignalResourceDeleted : public SQLite::IScalarFunction |
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1125 { |
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1126 private: |
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1127 SQLiteDatabaseWrapper& sqlite_; |
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1128 |
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1129 public: |
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1130 SignalResourceDeleted(SQLiteDatabaseWrapper& sqlite) : |
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1131 sqlite_(sqlite) |
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1132 { |
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1133 } |
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1134 |
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1135 virtual const char* GetName() const ORTHANC_OVERRIDE |
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1136 { |
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1137 return "SignalResourceDeleted"; |
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1138 } |
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1139 |
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1140 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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1141 { |
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1142 return 2; |
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1143 } |
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1144 |
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1145 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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1146 { |
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1147 if (sqlite_.activeTransaction_ != NULL) |
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1148 { |
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1149 sqlite_.activeTransaction_->GetListener(). |
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1150 SignalResourceDeleted(static_cast<ResourceType>(context.GetIntValue(1)), |
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1151 context.GetStringValue(0)); |
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1152 } |
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1153 } |
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1154 }; |
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1155 |
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1156 |
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1157 class SQLiteDatabaseWrapper::ReadWriteTransaction : public SQLiteDatabaseWrapper::TransactionBase |
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1158 { |
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1159 private: |
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1160 SQLiteDatabaseWrapper& that_; |
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1161 std::unique_ptr<SQLite::Transaction> transaction_; |
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1162 int64_t initialDiskSize_; |
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1163 |
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1164 public: |
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1165 ReadWriteTransaction(SQLiteDatabaseWrapper& that, |
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1166 IDatabaseListener& listener) : |
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1167 TransactionBase(that.mutex_, that.db_, listener, *that.signalRemainingAncestor_), |
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1168 that_(that), |
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1169 transaction_(new SQLite::Transaction(that_.db_)) |
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1170 { |
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1171 if (that_.activeTransaction_ != NULL) |
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1172 { |
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1173 throw OrthancException(ErrorCode_InternalError); |
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1174 } |
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1175 |
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1176 that_.activeTransaction_ = this; |
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1177 |
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1178 #if defined(NDEBUG) |
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1179 // Release mode |
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1180 initialDiskSize_ = 0; |
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1181 #else |
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1182 // Debug mode |
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1183 initialDiskSize_ = static_cast<int64_t>(GetTotalCompressedSize()); |
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1184 #endif |
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1185 } |
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1186 |
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1187 virtual ~ReadWriteTransaction() |
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1188 { |
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1189 assert(that_.activeTransaction_ != NULL); |
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1190 that_.activeTransaction_ = NULL; |
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1191 } |
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1192 |
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1193 void Begin() |
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1194 { |
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1195 transaction_->Begin(); |
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1196 } |
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1197 |
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1198 virtual void Rollback() ORTHANC_OVERRIDE |
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1199 { |
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1200 transaction_->Rollback(); |
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1201 } |
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1202 |
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1203 virtual void Commit(int64_t fileSizeDelta /* only used in debug */) ORTHANC_OVERRIDE |
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1204 { |
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1205 transaction_->Commit(); |
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1206 |
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1207 assert(initialDiskSize_ + fileSizeDelta >= 0 && |
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1208 initialDiskSize_ + fileSizeDelta == static_cast<int64_t>(GetTotalCompressedSize())); |
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1209 } |
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1210 }; |
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1211 |
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1212 |
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1213 class SQLiteDatabaseWrapper::ReadOnlyTransaction : public SQLiteDatabaseWrapper::TransactionBase |
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1214 { |
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1215 private: |
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1216 SQLiteDatabaseWrapper& that_; |
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1217 |
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1218 public: |
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1219 ReadOnlyTransaction(SQLiteDatabaseWrapper& that, |
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1220 IDatabaseListener& listener) : |
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1221 TransactionBase(that.mutex_, that.db_, listener, *that.signalRemainingAncestor_), |
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1222 that_(that) |
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1223 { |
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1224 if (that_.activeTransaction_ != NULL) |
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1225 { |
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1226 throw OrthancException(ErrorCode_InternalError); |
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1227 } |
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1228 |
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1229 that_.activeTransaction_ = this; |
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1230 } |
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1231 |
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1232 virtual ~ReadOnlyTransaction() |
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1233 { |
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1234 assert(that_.activeTransaction_ != NULL); |
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1235 that_.activeTransaction_ = NULL; |
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1236 } |
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1237 |
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1238 virtual void Rollback() ORTHANC_OVERRIDE |
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1239 { |
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1240 } |
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1241 |
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1242 virtual void Commit(int64_t fileSizeDelta /* only used in debug */) ORTHANC_OVERRIDE |
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1243 { |
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1244 if (fileSizeDelta != 0) |
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1245 { |
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1246 throw OrthancException(ErrorCode_InternalError); |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
1247 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
1248 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1249 }; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1250 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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1251 |
3017
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1252 SQLiteDatabaseWrapper::SQLiteDatabaseWrapper(const std::string& path) : |
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|
1253 activeTransaction_(NULL), |
1847 | 1254 signalRemainingAncestor_(NULL), |
1255 version_(0) | |
183 | 1256 { |
1257 db_.Open(path); | |
1258 } | |
1259 | |
2773
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1260 |
3017
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1261 SQLiteDatabaseWrapper::SQLiteDatabaseWrapper() : |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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1262 activeTransaction_(NULL), |
1847 | 1263 signalRemainingAncestor_(NULL), |
1264 version_(0) | |
183 | 1265 { |
1266 db_.OpenInMemory(); | |
1267 } | |
1268 | |
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1269 SQLiteDatabaseWrapper::~SQLiteDatabaseWrapper() |
3116 | 1270 { |
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1271 if (activeTransaction_ != NULL) |
3116 | 1272 { |
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1273 LOG(ERROR) << "A SQLite transaction is still active in the SQLiteDatabaseWrapper destructor: Expect a crash"; |
3116 | 1274 } |
1275 } | |
1276 | |
1277 | |
3017
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1278 void SQLiteDatabaseWrapper::Open() |
183 | 1279 { |
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1280 { |
4594
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1281 boost::mutex::scoped_lock lock(mutex_); |
1717
3926e6317a43
SetIdentifierTagInternal
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1282 |
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1283 if (signalRemainingAncestor_ != NULL) |
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1284 { |
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1285 throw OrthancException(ErrorCode_BadSequenceOfCalls); // Cannot open twice |
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1286 } |
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1287 |
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1288 signalRemainingAncestor_ = dynamic_cast<SignalRemainingAncestor*>(db_.Register(new SignalRemainingAncestor)); |
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1289 db_.Register(new SignalFileDeleted(*this)); |
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1290 db_.Register(new SignalResourceDeleted(*this)); |
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1291 |
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1292 db_.Execute("PRAGMA ENCODING=\"UTF-8\";"); |
374 | 1293 |
4594
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Sebastien Jodogne <s.jodogne@gmail.com>
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1294 // Performance tuning of SQLite with PRAGMAs |
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1295 // http://www.sqlite.org/pragma.html |
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1296 db_.Execute("PRAGMA SYNCHRONOUS=NORMAL;"); |
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1297 db_.Execute("PRAGMA JOURNAL_MODE=WAL;"); |
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1298 db_.Execute("PRAGMA LOCKING_MODE=EXCLUSIVE;"); |
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1299 db_.Execute("PRAGMA WAL_AUTOCHECKPOINT=1000;"); |
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1300 //db_.Execute("PRAGMA TEMP_STORE=memory"); |
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1301 |
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1302 // Make "LIKE" case-sensitive in SQLite |
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|
1303 db_.Execute("PRAGMA case_sensitive_like = true;"); |
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1304 } |
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1305 |
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|
1306 VoidDatabaseListener listener; |
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1307 |
183 | 1308 { |
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changeset
|
1309 std::unique_ptr<ITransaction> transaction(StartTransaction(TransactionType_ReadOnly, listener)); |
1239 | 1310 |
3116 | 1311 if (!db_.DoesTableExist("GlobalProperties")) |
3018
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1312 { |
3116 | 1313 LOG(INFO) << "Creating the database"; |
3018
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|
1314 std::string query; |
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|
1315 ServerResources::GetFileResource(query, ServerResources::PREPARE_DATABASE); |
3018
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|
1316 db_.Execute(query); |
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1317 } |
3116 | 1318 |
1319 // Check the version of the database | |
1320 std::string tmp; | |
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|
1321 if (!transaction->LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion)) |
3116 | 1322 { |
1323 tmp = "Unknown"; | |
1324 } | |
1325 | |
1326 bool ok = false; | |
1327 try | |
1328 { | |
1329 LOG(INFO) << "Version of the Orthanc database: " << tmp; | |
1330 version_ = boost::lexical_cast<unsigned int>(tmp); | |
1331 ok = true; | |
1332 } | |
1333 catch (boost::bad_lexical_cast&) | |
1334 { | |
1335 } | |
1336 | |
1337 if (!ok) | |
1338 { | |
1339 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion, | |
1340 "Incompatible version of the Orthanc database: " + tmp); | |
1341 } | |
1342 | |
1343 // New in Orthanc 1.5.1 | |
1344 if (version_ == 6) | |
1345 { | |
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|
1346 if (!transaction->LookupGlobalProperty(tmp, GlobalProperty_GetTotalSizeIsFast) || |
3116 | 1347 tmp != "1") |
1348 { | |
1349 LOG(INFO) << "Installing the SQLite triggers to track the size of the attachments"; | |
1350 std::string query; | |
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|
1351 ServerResources::GetFileResource(query, ServerResources::INSTALL_TRACK_ATTACHMENTS_SIZE); |
3116 | 1352 db_.Execute(query); |
1353 } | |
1354 } | |
1355 | |
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changeset
|
1356 transaction->Commit(0); |
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1357 } |
1247 | 1358 } |
1359 | |
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1360 |
4594
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changeset
|
1361 void SQLiteDatabaseWrapper::Close() |
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1362 { |
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1363 boost::mutex::scoped_lock lock(mutex_); |
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|
1364 db_.Close(); |
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1365 } |
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|
1366 |
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1367 |
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1368 static void ExecuteUpgradeScript(SQLite::Connection& db, |
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|
1369 ServerResources::FileResourceId script) |
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1370 { |
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1371 std::string upgrade; |
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1372 ServerResources::GetFileResource(upgrade, script); |
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1373 db.BeginTransaction(); |
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1374 db.Execute(upgrade); |
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1375 db.CommitTransaction(); |
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1376 } |
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1377 |
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1378 |
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1379 void SQLiteDatabaseWrapper::Upgrade(unsigned int targetVersion, |
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1380 IStorageArea& storageArea) |
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1381 { |
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1382 boost::mutex::scoped_lock lock(mutex_); |
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1383 |
1664
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1384 if (targetVersion != 6) |
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1385 { |
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1386 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
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1387 } |
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1388 |
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1389 // This version of Orthanc is only compatible with versions 3, 4, |
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1390 // 5 and 6 of the DB schema |
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1391 if (version_ != 3 && |
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1392 version_ != 4 && |
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1393 version_ != 5 && |
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1394 version_ != 6) |
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1395 { |
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1396 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
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1397 } |
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1398 |
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1399 if (version_ == 3) |
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1400 { |
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1401 LOG(WARNING) << "Upgrading database version from 3 to 4"; |
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1402 ExecuteUpgradeScript(db_, ServerResources::UPGRADE_DATABASE_3_TO_4); |
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|
1403 version_ = 4; |
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1404 } |
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1405 |
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|
1406 if (version_ == 4) |
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1407 { |
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diff
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|
1408 LOG(WARNING) << "Upgrading database version from 4 to 5"; |
4031
e3b3af80732d
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diff
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|
1409 ExecuteUpgradeScript(db_, ServerResources::UPGRADE_DATABASE_4_TO_5); |
1615
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|
1410 version_ = 5; |
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|
1411 } |
1664
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|
1412 |
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1413 if (version_ == 5) |
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|
1414 { |
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|
1415 LOG(WARNING) << "Upgrading database version from 5 to 6"; |
1668
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diff
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1416 // No change in the DB schema, the step from version 5 to 6 only |
1710 | 1417 // consists in reconstructing the main DICOM tags information |
1418 // (as more tags got included). | |
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1419 |
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|
1420 VoidDatabaseListener listener; |
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1421 |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
1422 { |
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diff
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1423 std::unique_ptr<ITransaction> transaction(StartTransaction(TransactionType_ReadWrite, listener)); |
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|
1424 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Patient); |
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|
1425 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Study); |
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|
1426 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Series); |
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1427 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Instance); |
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|
1428 db_.Execute("UPDATE GlobalProperties SET value=\"6\" WHERE property=" + |
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diff
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|
1429 boost::lexical_cast<std::string>(GlobalProperty_DatabaseSchemaVersion) + ";"); |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
1430 transaction->Commit(0); |
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|
1431 } |
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|
1432 |
1664
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|
1433 version_ = 6; |
1729 | 1434 } |
1615
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1435 } |
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|
1436 |
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|
1437 |
4589
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|
1438 IDatabaseWrapper::ITransaction* SQLiteDatabaseWrapper::StartTransaction(TransactionType type, |
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|
1439 IDatabaseListener& listener) |
4570
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|
1440 { |
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|
1441 switch (type) |
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|
1442 { |
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diff
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|
1443 case TransactionType_ReadOnly: |
4589
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diff
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|
1444 return new ReadOnlyTransaction(*this, listener); // This is a no-op transaction in SQLite (thanks to mutex) |
4570
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1445 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1446 case TransactionType_ReadWrite: |
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diff
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|
1447 { |
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diff
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|
1448 std::unique_ptr<ReadWriteTransaction> transaction; |
4589
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attaching the listener to transactions in IDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1449 transaction.reset(new ReadWriteTransaction(*this, listener)); |
4570
648defffc8cc
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diff
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|
1450 transaction->Begin(); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1451 return transaction.release(); |
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diff
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|
1452 } |
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diff
changeset
|
1453 |
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diff
changeset
|
1454 default: |
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diff
changeset
|
1455 throw OrthancException(ErrorCode_InternalError); |
648defffc8cc
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1456 } |
3019
8336204d95dc
refactoring computation of disk size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
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3018
diff
changeset
|
1457 } |
8336204d95dc
refactoring computation of disk size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1458 |
4591
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diff
changeset
|
1459 |
4594
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
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4592
diff
changeset
|
1460 void SQLiteDatabaseWrapper::FlushToDisk() |
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removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1461 { |
d494b4f1103e
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1462 boost::mutex::scoped_lock lock(mutex_); |
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removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
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4592
diff
changeset
|
1463 db_.FlushToDisk(); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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4592
diff
changeset
|
1464 } |
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removed the global database mutex from ServerIndex and StatelessDatabaseOperations
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diff
changeset
|
1465 |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1466 |
4591
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
1467 int64_t SQLiteDatabaseWrapper::UnitTestsTransaction::CreateResource(const std::string& publicId, |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
1468 ResourceType type) |
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|
1469 { |
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diff
changeset
|
1470 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources VALUES(NULL, ?, ?, NULL)"); |
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|
1471 s.BindInt(0, type); |
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|
1472 s.BindString(1, publicId); |
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|
1473 s.Run(); |
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|
1474 return db_.GetLastInsertRowId(); |
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|
1475 } |
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|
1476 |
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|
1477 |
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changeset
|
1478 void SQLiteDatabaseWrapper::UnitTestsTransaction::AttachChild(int64_t parent, |
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changeset
|
1479 int64_t child) |
2773
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|
1480 { |
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changeset
|
1481 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); |
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changeset
|
1482 s.BindInt64(0, parent); |
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|
1483 s.BindInt64(1, child); |
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|
1484 s.Run(); |
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|
1485 } |
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|
1486 |
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|
1487 |
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|
1488 void SQLiteDatabaseWrapper::UnitTestsTransaction::SetIdentifierTag(int64_t id, |
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1489 const DicomTag& tag, |
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|
1490 const std::string& value) |
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1491 { |
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|
1492 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers VALUES(?, ?, ?, ?)"); |
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changeset
|
1493 s.BindInt64(0, id); |
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changeset
|
1494 s.BindInt(1, tag.GetGroup()); |
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|
1495 s.BindInt(2, tag.GetElement()); |
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|
1496 s.BindString(3, value); |
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|
1497 s.Run(); |
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|
1498 } |
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|
1499 |
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|
1500 |
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|
1501 void SQLiteDatabaseWrapper::UnitTestsTransaction::SetMainDicomTag(int64_t id, |
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|
1502 const DicomTag& tag, |
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|
1503 const std::string& value) |
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1504 { |
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changeset
|
1505 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags VALUES(?, ?, ?, ?)"); |
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|
1506 s.BindInt64(0, id); |
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|
1507 s.BindInt(1, tag.GetGroup()); |
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changeset
|
1508 s.BindInt(2, tag.GetElement()); |
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|
1509 s.BindString(3, value); |
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|
1510 s.Run(); |
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|
1511 } |
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changeset
|
1512 |
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changeset
|
1513 |
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|
1514 int64_t SQLiteDatabaseWrapper::UnitTestsTransaction::GetTableRecordCount(const std::string& table) |
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|
1515 { |
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1516 /** |
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1517 * "Generally one cannot use SQL parameters/placeholders for |
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1518 * database identifiers (tables, columns, views, schemas, etc.) or |
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1519 * database functions (e.g., CURRENT_DATE), but instead only for |
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1520 * binding literal values." => To avoid any SQL injection, we |
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1521 * check that the "table" parameter has only alphabetic |
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1522 * characters. |
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1523 * https://stackoverflow.com/a/1274764/881731 |
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1524 **/ |
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1525 for (size_t i = 0; i < table.size(); i++) |
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1526 { |
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1527 if (!isalpha(table[i])) |
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1528 { |
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1529 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1530 } |
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1531 } |
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1532 |
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1533 // Don't use "SQLITE_FROM_HERE", otherwise "table" would be cached |
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1534 SQLite::Statement s(db_, "SELECT COUNT(*) FROM " + table); |
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1535 |
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1536 if (s.Step()) |
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1537 { |
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1538 int64_t c = s.ColumnInt(0); |
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1539 assert(!s.Step()); |
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1540 return c; |
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1541 } |
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1542 else |
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1543 { |
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1544 throw OrthancException(ErrorCode_InternalError); |
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1545 } |
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1546 } |
3121 | 1547 |
1548 | |
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1549 bool SQLiteDatabaseWrapper::UnitTestsTransaction::GetParentPublicId(std::string& target, |
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1550 int64_t id) |
3121 | 1551 { |
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1552 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " |
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1553 "WHERE a.internalId = b.parentId AND b.internalId = ?"); |
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1554 s.BindInt64(0, id); |
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1555 |
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1556 if (s.Step()) |
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1557 { |
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1558 target = s.ColumnString(0); |
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1559 return true; |
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1560 } |
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1561 else |
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1562 { |
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1563 return false; |
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1564 } |
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1565 } |
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1566 |
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1567 |
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1568 void SQLiteDatabaseWrapper::UnitTestsTransaction::GetChildren(std::list<std::string>& childrenPublicIds, |
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1569 int64_t id) |
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1570 { |
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1571 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
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1572 s.BindInt64(0, id); |
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1573 |
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1574 childrenPublicIds.clear(); |
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1575 while (s.Step()) |
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1576 { |
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1577 childrenPublicIds.push_back(s.ColumnString(0)); |
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1578 } |
3121 | 1579 } |
183 | 1580 } |