Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 3007:c9f93628215a
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author | am@osimis.io |
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date | Thu, 13 Dec 2018 14:48:23 +0100 |
parents | bbfd95a0c429 |
children | 750de70b3603 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "OrthancRestApi.h" |
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36 |
2642 | 37 #include "../../Core/DicomParsing/FromDcmtkBridge.h" |
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38 #include "../../Core/Logging.h" |
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39 #include "../../Core/SerializationToolbox.h" |
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40 #include "../ServerContext.h" |
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41 #include "../ServerJobs/MergeStudyJob.h" |
2642 | 42 #include "../ServerJobs/ResourceModificationJob.h" |
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43 #include "../ServerJobs/SplitStudyJob.h" |
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44 |
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45 #include <boost/lexical_cast.hpp> |
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46 #include <boost/algorithm/string/predicate.hpp> |
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47 |
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48 namespace Orthanc |
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49 { |
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50 // Modification of DICOM instances ------------------------------------------ |
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51 |
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52 |
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53 static std::string GeneratePatientName(ServerContext& context) |
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54 { |
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55 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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56 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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57 } |
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58 |
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59 |
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60 static void ParseModifyRequest(Json::Value& request, |
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61 DicomModification& target, |
2517 | 62 const RestApiPostCall& call) |
63 { | |
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64 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"},"Priority":9}' |
2517 | 65 |
66 if (call.ParseJsonRequest(request)) | |
67 { | |
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68 target.ParseModifyRequest(request); |
2517 | 69 } |
70 else | |
71 { | |
72 throw OrthancException(ErrorCode_BadFileFormat); | |
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73 } |
2517 | 74 } |
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75 |
2517 | 76 |
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77 static void ParseAnonymizationRequest(Json::Value& request, |
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78 DicomModification& target, |
2517 | 79 RestApiPostCall& call) |
80 { | |
81 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Remove":["Modality"]}' > Anonymized.dcm | |
82 | |
83 if (call.ParseJsonRequest(request) && | |
84 request.isObject()) | |
85 { | |
2518 | 86 bool patientNameReplaced; |
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87 target.ParseAnonymizationRequest(patientNameReplaced, request); |
2518 | 88 |
89 if (patientNameReplaced) | |
90 { | |
91 // Overwrite the random Patient's Name by one that is more | |
92 // user-friendly (provided none was specified by the user) | |
93 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true); | |
94 } | |
2517 | 95 } |
96 else | |
97 { | |
98 throw OrthancException(ErrorCode_BadFileFormat); | |
99 } | |
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100 } |
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101 |
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102 |
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103 static void AnonymizeOrModifyInstance(DicomModification& modification, |
974 | 104 RestApiPostCall& call) |
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105 { |
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106 std::string id = call.GetUriComponent("id", ""); |
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107 |
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108 std::auto_ptr<ParsedDicomFile> modified; |
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109 |
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110 { |
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111 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
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112 modified.reset(locker.GetDicom().Clone(true)); |
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113 } |
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114 |
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115 modification.Apply(*modified); |
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116 modified->Answer(call.GetOutput()); |
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117 } |
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118 |
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119 |
974 | 120 static void ModifyInstance(RestApiPostCall& call) |
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121 { |
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122 DicomModification modification; |
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123 modification.SetAllowManualIdentifiers(true); |
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124 |
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125 Json::Value request; |
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126 ParseModifyRequest(request, modification, call); |
2517 | 127 |
128 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID)) | |
129 { | |
130 modification.SetLevel(ResourceType_Patient); | |
131 } | |
132 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) | |
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133 { |
2517 | 134 modification.SetLevel(ResourceType_Study); |
135 } | |
136 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) | |
137 { | |
138 modification.SetLevel(ResourceType_Series); | |
139 } | |
140 else | |
141 { | |
142 modification.SetLevel(ResourceType_Instance); | |
143 } | |
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144 |
2517 | 145 AnonymizeOrModifyInstance(modification, call); |
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146 } |
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147 |
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148 |
974 | 149 static void AnonymizeInstance(RestApiPostCall& call) |
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150 { |
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151 DicomModification modification; |
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152 modification.SetAllowManualIdentifiers(true); |
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153 |
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154 Json::Value request; |
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155 ParseAnonymizationRequest(request, modification, call); |
2517 | 156 |
157 AnonymizeOrModifyInstance(modification, call); | |
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158 } |
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159 |
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160 |
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161 static void SubmitModificationJob(std::auto_ptr<DicomModification>& modification, |
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162 bool isAnonymization, |
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163 RestApiPostCall& call, |
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164 const Json::Value& body, |
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165 ResourceType level) |
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166 { |
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167 ServerContext& context = OrthancRestApi::GetContext(call); |
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168 |
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169 std::auto_ptr<ResourceModificationJob> job(new ResourceModificationJob(context)); |
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170 |
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171 job->SetModification(modification.release(), level, isAnonymization); |
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172 job->SetOrigin(call); |
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173 |
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174 context.AddChildInstances(*job, call.GetUriComponent("id", "")); |
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175 |
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176 OrthancRestApi::GetApi(call).SubmitCommandsJob |
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177 (call, job.release(), true /* synchronous by default */, body); |
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178 } |
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179 |
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180 |
2639 | 181 template <enum ResourceType resourceType> |
974 | 182 static void ModifyResource(RestApiPostCall& call) |
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183 { |
2639 | 184 std::auto_ptr<DicomModification> modification(new DicomModification); |
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185 |
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186 Json::Value body; |
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187 ParseModifyRequest(body, *modification, call); |
2517 | 188 |
2639 | 189 modification->SetLevel(resourceType); |
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190 |
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191 SubmitModificationJob(modification, false /* not an anonymization */, |
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192 call, body, resourceType); |
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193 } |
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194 |
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195 |
2639 | 196 template <enum ResourceType resourceType> |
974 | 197 static void AnonymizeResource(RestApiPostCall& call) |
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198 { |
2639 | 199 std::auto_ptr<DicomModification> modification(new DicomModification); |
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200 |
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201 Json::Value body; |
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202 ParseAnonymizationRequest(body, *modification, call); |
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203 |
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204 SubmitModificationJob(modification, true /* anonymization */, |
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205 call, body, resourceType); |
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206 } |
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207 |
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208 |
1569 | 209 static void StoreCreatedInstance(std::string& id /* out */, |
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210 RestApiPostCall& call, |
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211 ParsedDicomFile& dicom, |
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212 bool sendAnswer) |
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213 { |
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214 DicomInstanceToStore toStore; |
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215 toStore.SetOrigin(DicomInstanceOrigin::FromRest(call)); |
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216 toStore.SetParsedDicomFile(dicom); |
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217 |
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218 ServerContext& context = OrthancRestApi::GetContext(call); |
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219 StoreStatus status = context.Store(id, toStore); |
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220 |
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221 if (status == StoreStatus_Failure) |
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222 { |
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223 throw OrthancException(ErrorCode_CannotStoreInstance); |
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224 } |
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225 |
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226 if (sendAnswer) |
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227 { |
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228 OrthancRestApi::GetApi(call).AnswerStoredInstance(call, toStore, status); |
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229 } |
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230 } |
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231 |
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232 |
1569 | 233 static void CreateDicomV1(ParsedDicomFile& dicom, |
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234 RestApiPostCall& call, |
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235 const Json::Value& request) |
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236 { |
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237 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}' |
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238 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}' |
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239 |
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240 assert(request.isObject()); |
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241 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom"; |
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242 |
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243 Json::Value::Members members = request.getMemberNames(); |
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244 for (size_t i = 0; i < members.size(); i++) |
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245 { |
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246 const std::string& name = members[i]; |
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247 if (request[name].type() != Json::stringValue) |
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248 { |
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249 throw OrthancException(ErrorCode_CreateDicomNotString); |
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250 } |
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251 |
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252 std::string value = request[name].asString(); |
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253 |
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254 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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255 if (tag == DICOM_TAG_PIXEL_DATA) |
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256 { |
1562 | 257 dicom.EmbedContent(value); |
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258 } |
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259 else |
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260 { |
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261 // This is V1, don't try and decode data URI scheme |
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262 dicom.ReplacePlainString(tag, value); |
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263 } |
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264 } |
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265 } |
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266 |
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267 |
1569 | 268 static void InjectTags(ParsedDicomFile& dicom, |
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269 const Json::Value& tags, |
1689 | 270 bool decodeBinaryTags) |
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271 { |
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272 if (tags.type() != Json::objectValue) |
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273 { |
2955 | 274 throw OrthancException(ErrorCode_BadRequest, "Tags field is not an array"); |
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275 } |
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276 |
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277 // Inject the user-specified tags |
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278 Json::Value::Members members = tags.getMemberNames(); |
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279 for (size_t i = 0; i < members.size(); i++) |
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280 { |
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281 const std::string& name = members[i]; |
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282 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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283 |
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284 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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285 { |
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286 if (tag != DICOM_TAG_PATIENT_ID && |
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287 tag != DICOM_TAG_ACQUISITION_DATE && |
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288 tag != DICOM_TAG_ACQUISITION_TIME && |
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289 tag != DICOM_TAG_CONTENT_DATE && |
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290 tag != DICOM_TAG_CONTENT_TIME && |
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291 tag != DICOM_TAG_INSTANCE_CREATION_DATE && |
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292 tag != DICOM_TAG_INSTANCE_CREATION_TIME && |
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293 tag != DICOM_TAG_SERIES_DATE && |
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294 tag != DICOM_TAG_SERIES_TIME && |
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295 tag != DICOM_TAG_STUDY_DATE && |
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296 tag != DICOM_TAG_STUDY_TIME && |
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297 dicom.HasTag(tag)) |
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298 { |
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299 throw OrthancException(ErrorCode_CreateDicomOverrideTag, name); |
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300 } |
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301 |
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302 if (tag == DICOM_TAG_PIXEL_DATA) |
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303 { |
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304 throw OrthancException(ErrorCode_CreateDicomUseContent); |
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305 } |
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306 else |
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307 { |
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308 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent); |
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309 } |
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310 } |
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311 } |
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312 } |
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313 |
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314 |
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315 static void CreateSeries(RestApiPostCall& call, |
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316 ParsedDicomFile& base /* in */, |
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317 const Json::Value& content, |
1689 | 318 bool decodeBinaryTags) |
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319 { |
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320 assert(content.isArray()); |
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321 assert(content.size() > 0); |
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322 ServerContext& context = OrthancRestApi::GetContext(call); |
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323 |
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324 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size())); |
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325 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1"); |
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326 |
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327 std::string someInstance; |
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328 |
1566 | 329 try |
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330 { |
1569 | 331 for (Json::ArrayIndex i = 0; i < content.size(); i++) |
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332 { |
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333 std::auto_ptr<ParsedDicomFile> dicom(base.Clone(false)); |
1566 | 334 const Json::Value* payload = NULL; |
335 | |
336 if (content[i].type() == Json::stringValue) | |
337 { | |
338 payload = &content[i]; | |
339 } | |
340 else if (content[i].type() == Json::objectValue) | |
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341 { |
1566 | 342 if (!content[i].isMember("Content")) |
343 { | |
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344 throw OrthancException(ErrorCode_CreateDicomNoPayload); |
1566 | 345 } |
346 | |
347 payload = &content[i]["Content"]; | |
348 | |
1569 | 349 if (content[i].isMember("Tags")) |
1570 | 350 { |
1689 | 351 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags); |
1570 | 352 } |
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353 } |
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354 |
1566 | 355 if (payload == NULL || |
356 payload->type() != Json::stringValue) | |
357 { | |
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358 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1566 | 359 } |
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360 |
1566 | 361 dicom->EmbedContent(payload->asString()); |
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362 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1)); |
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363 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1)); |
1566 | 364 |
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365 StoreCreatedInstance(someInstance, call, *dicom, false); |
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366 } |
1566 | 367 } |
1616 | 368 catch (OrthancException&) |
1566 | 369 { |
1569 | 370 // Error: Remove the newly-created series |
371 | |
372 std::string series; | |
373 if (context.GetIndex().LookupParent(series, someInstance)) | |
1570 | 374 { |
1569 | 375 Json::Value dummy; |
376 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series); | |
1570 | 377 } |
1569 | 378 |
1616 | 379 throw; |
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380 } |
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381 |
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382 std::string series; |
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383 if (context.GetIndex().LookupParent(series, someInstance)) |
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384 { |
1569 | 385 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success); |
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386 } |
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387 } |
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388 |
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389 |
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390 static void CreateDicomV2(RestApiPostCall& call, |
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391 const Json::Value& request) |
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392 { |
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393 assert(request.isObject()); |
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394 ServerContext& context = OrthancRestApi::GetContext(call); |
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395 |
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396 if (!request.isMember("Tags") || |
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397 request["Tags"].type() != Json::objectValue) |
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398 { |
1569 | 399 throw OrthancException(ErrorCode_BadRequest); |
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400 } |
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401 |
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402 ParsedDicomFile dicom(true); |
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403 |
1557 | 404 { |
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405 Encoding encoding; |
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406 |
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407 if (request["Tags"].isMember("SpecificCharacterSet")) |
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408 { |
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409 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString(); |
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410 if (!GetDicomEncoding(encoding, tmp)) |
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411 { |
2955 | 412 throw OrthancException(ErrorCode_ParameterOutOfRange, |
413 "Unknown specific character set: " + std::string(tmp)); | |
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414 } |
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415 } |
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416 else |
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417 { |
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418 encoding = GetDefaultDicomEncoding(); |
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419 } |
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420 |
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421 dicom.SetEncoding(encoding); |
1557 | 422 } |
423 | |
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424 ResourceType parentType = ResourceType_Instance; |
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425 |
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426 if (request.isMember("Parent")) |
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427 { |
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428 // Locate the parent tags |
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429 std::string parent = request["Parent"].asString(); |
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Creation of DICOM files with encapsulated PDF
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430 if (!context.GetIndex().LookupResourceType(parentType, parent)) |
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Creation of DICOM files with encapsulated PDF
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431 { |
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432 throw OrthancException(ErrorCode_CreateDicomBadParent); |
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Creation of DICOM files with encapsulated PDF
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433 } |
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Creation of DICOM files with encapsulated PDF
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434 |
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Creation of DICOM files with encapsulated PDF
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435 if (parentType == ResourceType_Instance) |
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Creation of DICOM files with encapsulated PDF
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436 { |
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437 throw OrthancException(ErrorCode_CreateDicomParentIsInstance); |
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Creation of DICOM files with encapsulated PDF
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438 } |
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Creation of DICOM files with encapsulated PDF
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439 |
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Creation of DICOM files with encapsulated PDF
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440 // Select one existing child instance of the parent resource, to |
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Creation of DICOM files with encapsulated PDF
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441 // retrieve all its tags |
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Creation of DICOM files with encapsulated PDF
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442 Json::Value siblingTags; |
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443 |
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Creation of DICOM files with encapsulated PDF
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444 { |
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Creation of DICOM files with encapsulated PDF
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445 // Retrieve all the instances of the parent resource |
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Creation of DICOM files with encapsulated PDF
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446 std::list<std::string> siblingInstances; |
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Creation of DICOM files with encapsulated PDF
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447 context.GetIndex().GetChildInstances(siblingInstances, parent); |
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Creation of DICOM files with encapsulated PDF
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448 |
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Creation of DICOM files with encapsulated PDF
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449 if (siblingInstances.empty()) |
1569 | 450 { |
451 // Error: No instance (should never happen) | |
452 throw OrthancException(ErrorCode_InternalError); | |
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Creation of DICOM files with encapsulated PDF
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453 } |
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Creation of DICOM files with encapsulated PDF
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454 |
2124 | 455 context.ReadDicomAsJson(siblingTags, siblingInstances.front()); |
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456 } |
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Creation of DICOM files with encapsulated PDF
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457 |
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458 |
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459 // Choose the same encoding as the parent resource |
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460 { |
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461 static const char* SPECIFIC_CHARACTER_SET = "0008,0005"; |
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462 |
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463 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET)) |
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464 { |
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465 Encoding encoding; |
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466 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") || |
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467 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue || |
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468 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString())) |
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469 { |
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470 throw OrthancException(ErrorCode_CreateDicomParentEncoding); |
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471 } |
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472 |
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473 dicom.SetEncoding(encoding); |
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474 } |
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475 } |
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476 |
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477 |
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Creation of DICOM files with encapsulated PDF
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478 // Retrieve the tags for all the parent modules |
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Creation of DICOM files with encapsulated PDF
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479 typedef std::set<DicomTag> ModuleTags; |
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Creation of DICOM files with encapsulated PDF
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480 ModuleTags moduleTags; |
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481 |
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Creation of DICOM files with encapsulated PDF
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482 ResourceType type = parentType; |
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483 for (;;) |
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Creation of DICOM files with encapsulated PDF
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484 { |
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Creation of DICOM files with encapsulated PDF
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485 DicomTag::AddTagsForModule(moduleTags, GetModule(type)); |
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Creation of DICOM files with encapsulated PDF
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486 |
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Creation of DICOM files with encapsulated PDF
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487 if (type == ResourceType_Patient) |
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Creation of DICOM files with encapsulated PDF
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488 { |
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Creation of DICOM files with encapsulated PDF
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489 break; // We're done |
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Creation of DICOM files with encapsulated PDF
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490 } |
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Creation of DICOM files with encapsulated PDF
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491 |
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Creation of DICOM files with encapsulated PDF
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492 // Go up |
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Creation of DICOM files with encapsulated PDF
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493 std::string tmp; |
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Creation of DICOM files with encapsulated PDF
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494 if (!context.GetIndex().LookupParent(tmp, parent)) |
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Creation of DICOM files with encapsulated PDF
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495 { |
1569 | 496 throw OrthancException(ErrorCode_InternalError); |
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497 } |
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Creation of DICOM files with encapsulated PDF
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498 |
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Creation of DICOM files with encapsulated PDF
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499 parent = tmp; |
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Creation of DICOM files with encapsulated PDF
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500 type = GetParentResourceType(type); |
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Creation of DICOM files with encapsulated PDF
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501 } |
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Creation of DICOM files with encapsulated PDF
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502 |
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Creation of DICOM files with encapsulated PDF
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503 for (ModuleTags::const_iterator it = moduleTags.begin(); |
1616 | 504 it != moduleTags.end(); ++it) |
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Creation of DICOM files with encapsulated PDF
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505 { |
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Creation of DICOM files with encapsulated PDF
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506 std::string t = it->Format(); |
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Creation of DICOM files with encapsulated PDF
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507 if (siblingTags.isMember(t)) |
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Creation of DICOM files with encapsulated PDF
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508 { |
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Creation of DICOM files with encapsulated PDF
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509 const Json::Value& tag = siblingTags[t]; |
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Creation of DICOM files with encapsulated PDF
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510 if (tag["Type"] == "Null") |
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Creation of DICOM files with encapsulated PDF
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511 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
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512 dicom.ReplacePlainString(*it, ""); |
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Creation of DICOM files with encapsulated PDF
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513 } |
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Creation of DICOM files with encapsulated PDF
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514 else if (tag["Type"] == "String") |
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Creation of DICOM files with encapsulated PDF
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515 { |
1557 | 516 std::string value = tag["Value"].asString(); |
1982
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Modification of instances can now replace PixelData
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1934
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517 dicom.ReplacePlainString(*it, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding())); |
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Creation of DICOM files with encapsulated PDF
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518 } |
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Creation of DICOM files with encapsulated PDF
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519 } |
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Creation of DICOM files with encapsulated PDF
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520 } |
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Creation of DICOM files with encapsulated PDF
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521 } |
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Creation of DICOM files with encapsulated PDF
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522 |
1641
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523 |
1689 | 524 bool decodeBinaryTags = true; |
1641
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525 if (request.isMember("InterpretBinaryTags")) |
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Support of binary tags encoded using data URI scheme
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526 { |
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527 const Json::Value& v = request["InterpretBinaryTags"]; |
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528 if (v.type() != Json::booleanValue) |
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529 { |
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530 throw OrthancException(ErrorCode_BadRequest); |
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531 } |
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532 |
1689 | 533 decodeBinaryTags = v.asBool(); |
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534 } |
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535 |
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536 |
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537 // Inject time-related information |
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Creation of DICOM files with encapsulated PDF
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538 std::string date, time; |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
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diff
changeset
|
539 SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
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diff
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|
540 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date); |
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Modification of instances can now replace PixelData
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diff
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|
541 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time); |
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Modification of instances can now replace PixelData
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1934
diff
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|
542 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date); |
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Modification of instances can now replace PixelData
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diff
changeset
|
543 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time); |
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Modification of instances can now replace PixelData
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diff
changeset
|
544 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date); |
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Modification of instances can now replace PixelData
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1934
diff
changeset
|
545 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time); |
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Creation of DICOM files with encapsulated PDF
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546 |
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Creation of DICOM files with encapsulated PDF
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changeset
|
547 if (parentType == ResourceType_Patient || |
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Creation of DICOM files with encapsulated PDF
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548 parentType == ResourceType_Study || |
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Creation of DICOM files with encapsulated PDF
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549 parentType == ResourceType_Instance /* no parent */) |
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Creation of DICOM files with encapsulated PDF
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550 { |
1982
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Modification of instances can now replace PixelData
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diff
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551 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date); |
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Modification of instances can now replace PixelData
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diff
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552 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time); |
1555
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Creation of DICOM files with encapsulated PDF
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553 } |
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Creation of DICOM files with encapsulated PDF
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diff
changeset
|
554 |
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Creation of DICOM files with encapsulated PDF
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555 if (parentType == ResourceType_Patient || |
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Creation of DICOM files with encapsulated PDF
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556 parentType == ResourceType_Instance /* no parent */) |
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Creation of DICOM files with encapsulated PDF
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557 { |
1982
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Modification of instances can now replace PixelData
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diff
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|
558 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date); |
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1934
diff
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|
559 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time); |
1555
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Creation of DICOM files with encapsulated PDF
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560 } |
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Creation of DICOM files with encapsulated PDF
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|
561 |
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
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|
562 |
1689 | 563 InjectTags(dicom, request["Tags"], decodeBinaryTags); |
1555
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
564 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
565 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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changeset
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566 // Inject the content (either an image, or a PDF file) |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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567 if (request.isMember("Content")) |
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Creation of DICOM files with encapsulated PDF
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|
568 { |
1564
1b7def486e62
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569 const Json::Value& content = request["Content"]; |
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1562
diff
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|
570 |
1b7def486e62
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1562
diff
changeset
|
571 if (content.type() == Json::stringValue) |
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diff
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572 { |
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|
573 dicom.EmbedContent(request["Content"].asString()); |
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creation of DICOM series
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|
574 |
1b7def486e62
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
575 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
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|
576 else if (content.type() == Json::arrayValue) |
1b7def486e62
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diff
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|
577 { |
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diff
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|
578 if (content.size() > 0) |
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creation of DICOM series
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parents:
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diff
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|
579 { |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
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580 // Let's create a series instead of a single instance |
1689 | 581 CreateSeries(call, dicom, content, decodeBinaryTags); |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
582 return; |
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creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
583 } |
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creation of DICOM series
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parents:
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diff
changeset
|
584 } |
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
585 else |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
586 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
587 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
588 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
589 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
590 |
1564
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
591 std::string id; |
2899
5dd649de253d
POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
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2869
diff
changeset
|
592 StoreCreatedInstance(id, call, dicom, true); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
593 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
594 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
595 |
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Creation of DICOM files with encapsulated PDF
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changeset
|
596 static void CreateDicom(RestApiPostCall& call) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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changeset
|
597 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
598 Json::Value request; |
1569 | 599 if (!call.ParseJsonRequest(request) || |
600 !request.isObject()) | |
1570 | 601 { |
602 throw OrthancException(ErrorCode_BadRequest); | |
603 } | |
1569 | 604 |
605 if (request.isMember("Tags")) | |
1570 | 606 { |
607 CreateDicomV2(call, request); | |
608 } | |
1569 | 609 else |
1570 | 610 { |
611 // Compatibility with Orthanc <= 0.9.3 | |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1699
diff
changeset
|
612 ParsedDicomFile dicom(true); |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
613 CreateDicomV1(dicom, call, request); |
1569 | 614 |
1570 | 615 std::string id; |
2899
5dd649de253d
POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
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parents:
2869
diff
changeset
|
616 StoreCreatedInstance(id, call, dicom, true); |
1570 | 617 } |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
618 } |
e7b1ca0f1e04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
619 |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
620 |
2844
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parents:
2825
diff
changeset
|
621 static void SplitStudy(RestApiPostCall& call) |
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New URI: "/studies/.../split" to split a study
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diff
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|
622 { |
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changeset
|
623 ServerContext& context = OrthancRestApi::GetContext(call); |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
624 |
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diff
changeset
|
625 Json::Value request; |
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diff
changeset
|
626 if (!call.ParseJsonRequest(request)) |
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diff
changeset
|
627 { |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
628 // Bad JSON request |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
629 throw OrthancException(ErrorCode_BadFileFormat); |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
630 } |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
631 |
99863d6245b2
New URI: "/studies/.../split" to split a study
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parents:
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diff
changeset
|
632 const std::string study = call.GetUriComponent("id", ""); |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
633 |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
634 std::auto_ptr<SplitStudyJob> job(new SplitStudyJob(context, study)); |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
635 job->SetOrigin(call); |
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diff
changeset
|
636 |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
637 std::vector<std::string> series; |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
638 SerializationToolbox::ReadArrayOfStrings(series, request, "Series"); |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
639 |
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diff
changeset
|
640 for (size_t i = 0; i < series.size(); i++) |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
641 { |
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diff
changeset
|
642 job->AddSourceSeries(series[i]); |
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diff
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|
643 } |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
644 |
2860 | 645 job->AddTrailingStep(); |
646 | |
2844
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diff
changeset
|
647 static const char* KEEP_SOURCE = "KeepSource"; |
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diff
changeset
|
648 if (request.isMember(KEEP_SOURCE)) |
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diff
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|
649 { |
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diff
changeset
|
650 job->SetKeepSource(SerializationToolbox::ReadBoolean(request, KEEP_SOURCE)); |
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New URI: "/studies/.../split" to split a study
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diff
changeset
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651 } |
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diff
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|
652 |
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diff
changeset
|
653 static const char* REMOVE = "Remove"; |
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New URI: "/studies/.../split" to split a study
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changeset
|
654 if (request.isMember(REMOVE)) |
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655 { |
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|
656 if (request[REMOVE].type() != Json::arrayValue) |
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diff
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|
657 { |
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diff
changeset
|
658 throw OrthancException(ErrorCode_BadFileFormat); |
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diff
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|
659 } |
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diff
changeset
|
660 |
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diff
changeset
|
661 for (Json::Value::ArrayIndex i = 0; i < request[REMOVE].size(); i++) |
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662 { |
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diff
changeset
|
663 if (request[REMOVE][i].type() != Json::stringValue) |
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New URI: "/studies/.../split" to split a study
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|
664 { |
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diff
changeset
|
665 throw OrthancException(ErrorCode_BadFileFormat); |
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diff
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|
666 } |
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diff
changeset
|
667 else |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
668 { |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
669 job->Remove(FromDcmtkBridge::ParseTag(request[REMOVE][i].asCString())); |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
670 } |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
671 } |
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New URI: "/studies/.../split" to split a study
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diff
changeset
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672 } |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
673 |
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674 static const char* REPLACE = "Replace"; |
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675 if (request.isMember(REPLACE)) |
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676 { |
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677 if (request[REPLACE].type() != Json::objectValue) |
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678 { |
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679 throw OrthancException(ErrorCode_BadFileFormat); |
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680 } |
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681 |
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682 Json::Value::Members tags = request[REPLACE].getMemberNames(); |
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683 |
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684 for (size_t i = 0; i < tags.size(); i++) |
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685 { |
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686 const Json::Value& value = request[REPLACE][tags[i]]; |
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687 |
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688 if (value.type() != Json::stringValue) |
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689 { |
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690 throw OrthancException(ErrorCode_BadFileFormat); |
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691 } |
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692 else |
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693 { |
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694 job->Replace(FromDcmtkBridge::ParseTag(tags[i]), value.asString()); |
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695 } |
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696 } |
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697 } |
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698 |
2869 | 699 OrthancRestApi::GetApi(call).SubmitCommandsJob |
700 (call, job.release(), true /* synchronous by default */, request); | |
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701 } |
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702 |
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703 |
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704 static void MergeStudy(RestApiPostCall& call) |
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705 { |
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706 ServerContext& context = OrthancRestApi::GetContext(call); |
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707 |
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708 Json::Value request; |
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709 if (!call.ParseJsonRequest(request)) |
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710 { |
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711 // Bad JSON request |
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712 throw OrthancException(ErrorCode_BadFileFormat); |
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713 } |
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714 |
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715 const std::string study = call.GetUriComponent("id", ""); |
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716 |
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717 std::auto_ptr<MergeStudyJob> job(new MergeStudyJob(context, study)); |
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718 job->SetOrigin(call); |
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719 |
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720 std::vector<std::string> resources; |
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721 SerializationToolbox::ReadArrayOfStrings(resources, request, "Resources"); |
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722 |
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723 for (size_t i = 0; i < resources.size(); i++) |
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724 { |
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725 job->AddSource(resources[i]); |
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726 } |
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727 |
2860 | 728 job->AddTrailingStep(); |
729 | |
2853
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730 static const char* KEEP_SOURCE = "KeepSource"; |
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731 if (request.isMember(KEEP_SOURCE)) |
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732 { |
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733 job->SetKeepSource(SerializationToolbox::ReadBoolean(request, KEEP_SOURCE)); |
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734 } |
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735 |
2869 | 736 OrthancRestApi::GetApi(call).SubmitCommandsJob |
737 (call, job.release(), true /* synchronous by default */, request); | |
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738 } |
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739 |
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740 |
751
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741 void OrthancRestApi::RegisterAnonymizeModify() |
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742 { |
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743 Register("/instances/{id}/modify", ModifyInstance); |
2639 | 744 Register("/series/{id}/modify", ModifyResource<ResourceType_Series>); |
745 Register("/studies/{id}/modify", ModifyResource<ResourceType_Study>); | |
746 Register("/patients/{id}/modify", ModifyResource<ResourceType_Patient>); | |
751
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747 |
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748 Register("/instances/{id}/anonymize", AnonymizeInstance); |
2639 | 749 Register("/series/{id}/anonymize", AnonymizeResource<ResourceType_Series>); |
750 Register("/studies/{id}/anonymize", AnonymizeResource<ResourceType_Study>); | |
751 Register("/patients/{id}/anonymize", AnonymizeResource<ResourceType_Patient>); | |
796
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752 |
1120
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753 Register("/tools/create-dicom", CreateDicom); |
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754 |
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755 Register("/studies/{id}/split", SplitStudy); |
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756 Register("/studies/{id}/merge", MergeStudy); |
751
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757 } |
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758 } |