Mercurial > hg > orthanc
annotate OrthancServer/ServerContext.cpp @ 1561:c9e0e709485b
fix
author | jodogne |
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date | Fri, 21 Aug 2015 12:08:43 +0200 |
parents | 2c7d5eb588e6 |
children | 0c29ebe80ac9 |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
224 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
10 * | |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
22 * | |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
224 | 34 #include "ServerContext.h" |
35 | |
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36 #include "../Core/FileStorage/StorageAccessor.h" |
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37 #include "../Core/HttpServer/FilesystemHttpSender.h" |
1525 | 38 #include "../Core/HttpServer/HttpStreamTranscoder.h" |
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39 #include "../Core/Logging.h" |
795 | 40 #include "FromDcmtkBridge.h" |
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41 #include "ServerToolbox.h" |
771 | 42 #include "OrthancInitialization.h" |
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43 |
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44 #include <EmbeddedResources.h> |
794 | 45 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 46 |
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47 |
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48 #include "Scheduler/CallSystemCommand.h" |
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49 #include "Scheduler/DeleteInstanceCommand.h" |
1008 | 50 #include "Scheduler/ModifyInstanceCommand.h" |
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51 #include "Scheduler/StoreScuCommand.h" |
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52 #include "Scheduler/StorePeerCommand.h" |
1010 | 53 #include "OrthancRestApi/OrthancRestApi.h" |
1133 | 54 #include "../Plugins/Engine/OrthancPlugins.h" |
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55 |
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56 |
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57 #define ENABLE_DICOM_CACHE 1 |
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58 |
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59 static const size_t DICOM_CACHE_SIZE = 2; |
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60 |
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61 /** |
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62 * IMPORTANT: We make the assumption that the same instance of |
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63 * FileStorage can be accessed from multiple threads. This seems OK |
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64 * since the filesystem implements the required locking mechanisms, |
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65 * but maybe a read-writer lock on the "FileStorage" could be |
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66 * useful. Conversely, "ServerIndex" already implements mutex-based |
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67 * locking. |
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68 **/ |
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69 |
224 | 70 namespace Orthanc |
71 { | |
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72 void ServerContext::ChangeThread(ServerContext* that) |
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73 { |
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74 while (!that->done_) |
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75 { |
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76 std::auto_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(100)); |
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77 |
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78 if (obj.get() != NULL) |
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79 { |
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80 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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81 |
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82 boost::recursive_mutex::scoped_lock lock(that->listenersMutex_); |
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83 for (ServerListeners::iterator it = that->listeners_.begin(); |
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84 it != that->listeners_.end(); ++it) |
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85 { |
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86 try |
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87 { |
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88 it->GetListener().SignalChange(change); |
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89 } |
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90 catch (OrthancException& e) |
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91 { |
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92 LOG(ERROR) << "Error in the " << it->GetDescription() |
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93 << " callback while signaling a change: " << e.What(); |
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94 } |
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95 } |
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96 } |
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97 } |
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98 } |
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99 |
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100 |
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101 ServerContext::ServerContext(IDatabaseWrapper& database, |
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102 IStorageArea& area) : |
1247 | 103 index_(*this, database), |
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104 area_(area), |
656 | 105 compressionEnabled_(false), |
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106 storeMD5_(true), |
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107 provider_(*this), |
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108 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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109 scheduler_(Configuration::GetGlobalIntegerParameter("LimitJobs", 10)), |
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110 lua_(*this), |
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111 plugins_(NULL), |
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112 done_(false), |
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113 queryRetrieveArchive_(Configuration::GetGlobalIntegerParameter("QueryRetrieveSize", 10)), |
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114 defaultLocalAet_(Configuration::GetGlobalStringParameter("DicomAet", "ORTHANC")) |
224 | 115 { |
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116 uint64_t s = Configuration::GetGlobalIntegerParameter("DicomAssociationCloseDelay", 5); // In seconds |
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117 scu_.SetMillisecondsBeforeClose(s * 1000); // Milliseconds are expected here |
774 | 118 |
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119 listeners_.push_back(ServerListener(lua_, "Lua")); |
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120 |
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121 changeThread_ = boost::thread(ChangeThread, this); |
224 | 122 } |
123 | |
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124 |
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125 |
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126 ServerContext::~ServerContext() |
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127 { |
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128 if (!done_) |
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129 { |
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130 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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131 Stop(); |
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132 } |
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133 } |
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134 |
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135 |
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136 void ServerContext::Stop() |
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137 { |
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138 if (!done_) |
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139 { |
1459 | 140 { |
141 boost::recursive_mutex::scoped_lock lock(listenersMutex_); | |
142 listeners_.clear(); | |
143 } | |
144 | |
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145 done_ = true; |
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146 |
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147 if (changeThread_.joinable()) |
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148 { |
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149 changeThread_.join(); |
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150 } |
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151 |
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152 scu_.Finalize(); |
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153 |
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154 // Do not change the order below! |
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155 scheduler_.Stop(); |
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156 index_.Stop(); |
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157 } |
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158 } |
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159 |
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160 |
236 | 161 void ServerContext::SetCompressionEnabled(bool enabled) |
162 { | |
163 if (enabled) | |
164 LOG(WARNING) << "Disk compression is enabled"; | |
165 else | |
166 LOG(WARNING) << "Disk compression is disabled"; | |
167 | |
168 compressionEnabled_ = enabled; | |
169 } | |
170 | |
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171 |
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172 void ServerContext::RemoveFile(const std::string& fileUuid, |
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173 FileContentType type) |
227
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174 { |
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175 area_.Remove(fileUuid, type); |
227
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176 } |
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177 |
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178 |
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179 StoreStatus ServerContext::Store(std::string& resultPublicId, |
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180 DicomInstanceToStore& dicom) |
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181 { |
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182 try |
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183 { |
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184 StorageAccessor accessor(area_); |
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185 |
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186 DicomInstanceHasher hasher(dicom.GetSummary()); |
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187 resultPublicId = hasher.HashInstance(); |
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188 |
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189 Json::Value simplified; |
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190 SimplifyTags(simplified, dicom.GetJson()); |
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191 |
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192 // Test if the instance must be filtered out |
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193 bool accepted = true; |
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194 |
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195 { |
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196 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
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197 |
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198 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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199 { |
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200 try |
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201 { |
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202 if (!it->GetListener().FilterIncomingInstance(simplified, dicom.GetRemoteAet())) |
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203 { |
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204 accepted = false; |
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205 break; |
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206 } |
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207 } |
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208 catch (OrthancException& e) |
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209 { |
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210 LOG(ERROR) << "Error in the " << it->GetDescription() |
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211 << " callback while receiving an instance: " << e.What(); |
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212 throw; |
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213 } |
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214 } |
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215 } |
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216 |
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217 if (!accepted) |
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218 { |
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219 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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220 return StoreStatus_FilteredOut; |
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221 } |
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222 |
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223 // TODO Should we use "gzip" instead? |
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224 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
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225 |
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226 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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227 FileContentType_Dicom, compression, storeMD5_); |
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228 FileInfo jsonInfo = accessor.Write(dicom.GetJson().toStyledString(), |
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229 FileContentType_DicomAsJson, compression, storeMD5_); |
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230 |
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231 ServerIndex::Attachments attachments; |
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232 attachments.push_back(dicomInfo); |
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233 attachments.push_back(jsonInfo); |
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234 |
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235 typedef std::map<MetadataType, std::string> InstanceMetadata; |
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236 InstanceMetadata instanceMetadata; |
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237 StoreStatus status = index_.Store(instanceMetadata, dicom.GetSummary(), attachments, |
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238 dicom.GetRemoteAet(), dicom.GetMetadata()); |
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239 |
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240 // Only keep the metadata for the "instance" level |
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241 dicom.GetMetadata().clear(); |
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242 |
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243 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 244 it != instanceMetadata.end(); ++it) |
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245 { |
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246 dicom.GetMetadata().insert(std::make_pair(std::make_pair(ResourceType_Instance, it->first), |
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247 it->second)); |
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248 } |
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249 |
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250 if (status != StoreStatus_Success) |
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251 { |
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252 accessor.Remove(dicomInfo); |
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253 accessor.Remove(jsonInfo); |
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254 } |
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255 |
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256 switch (status) |
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257 { |
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258 case StoreStatus_Success: |
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259 LOG(INFO) << "New instance stored"; |
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260 break; |
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261 |
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262 case StoreStatus_AlreadyStored: |
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263 LOG(INFO) << "Already stored"; |
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264 break; |
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265 |
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266 case StoreStatus_Failure: |
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267 LOG(ERROR) << "Store failure"; |
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268 break; |
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269 |
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270 default: |
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271 // This should never happen |
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272 break; |
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273 } |
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274 |
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275 if (status == StoreStatus_Success || |
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276 status == StoreStatus_AlreadyStored) |
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277 { |
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278 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
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279 |
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280 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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281 { |
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282 try |
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283 { |
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284 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplified); |
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285 } |
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286 catch (OrthancException& e) |
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287 { |
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288 LOG(ERROR) << "Error in the " << it->GetDescription() |
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289 << " callback while receiving an instance: " << e.What(); |
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290 } |
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291 } |
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292 } |
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293 |
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294 return status; |
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295 } |
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296 catch (OrthancException& e) |
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297 { |
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298 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
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299 { |
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300 LogMissingRequiredTag(dicom.GetSummary()); |
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301 } |
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302 |
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303 throw; |
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304 } |
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305 } |
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306 |
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307 |
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308 |
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309 void ServerContext::AnswerAttachment(RestApiOutput& output, |
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310 const std::string& instancePublicId, |
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311 FileContentType content) |
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312 { |
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313 FileInfo attachment; |
236 | 314 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
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315 { |
236 | 316 throw OrthancException(ErrorCode_InternalError); |
317 } | |
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318 |
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319 StorageAccessor accessor(area_); |
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320 accessor.AnswerFile(output, attachment); |
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321 } |
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322 |
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323 |
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324 void ServerContext::ReadJson(Json::Value& result, |
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325 const std::string& instancePublicId) |
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326 { |
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327 std::string s; |
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328 ReadFile(s, instancePublicId, FileContentType_DicomAsJson); |
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329 |
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330 Json::Reader reader; |
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331 if (!reader.parse(s, result)) |
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332 { |
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333 throw OrthancException("Corrupted JSON file"); |
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334 } |
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335 } |
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336 |
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337 |
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338 void ServerContext::ReadFile(std::string& result, |
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339 const std::string& instancePublicId, |
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340 FileContentType content, |
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341 bool uncompressIfNeeded) |
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342 { |
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343 FileInfo attachment; |
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344 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
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345 { |
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346 throw OrthancException(ErrorCode_InternalError); |
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347 } |
1550 | 348 |
349 if (uncompressIfNeeded) | |
350 { | |
351 StorageAccessor accessor(area_); | |
352 accessor.Read(result, attachment); | |
353 } | |
354 else | |
355 { | |
356 // Do not interpret the content of the storage area, return the | |
357 // raw data | |
358 area_.Read(result, attachment.GetUuid(), content); | |
359 } | |
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360 } |
285
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361 |
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362 |
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363 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
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364 { |
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365 std::string content; |
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366 context_.ReadFile(content, instancePublicId, FileContentType_Dicom); |
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367 return new ParsedDicomFile(content); |
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368 } |
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369 |
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370 |
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371 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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372 const std::string& instancePublicId) : |
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373 that_(that), |
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374 lock_(that_.dicomCacheMutex_) |
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375 { |
291
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376 #if ENABLE_DICOM_CACHE == 0 |
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377 static std::auto_ptr<IDynamicObject> p; |
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378 p.reset(provider_.Provide(instancePublicId)); |
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379 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
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380 #else |
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381 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
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382 #endif |
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383 } |
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384 |
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385 |
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386 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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387 { |
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388 } |
304 | 389 |
390 | |
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391 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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392 { |
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393 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
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394 storeMD5_ = storeMD5; |
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395 } |
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396 |
699
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397 |
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398 bool ServerContext::AddAttachment(const std::string& resourceId, |
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399 FileContentType attachmentType, |
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400 const void* data, |
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401 size_t size) |
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402 { |
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403 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
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404 |
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405 // TODO Should we use "gzip" instead? |
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406 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
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407 |
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408 StorageAccessor accessor(area_); |
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409 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
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410 |
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411 StoreStatus status = index_.AddAttachment(attachment, resourceId); |
699
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412 if (status != StoreStatus_Success) |
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413 { |
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414 accessor.Remove(attachment); |
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415 return false; |
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416 } |
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417 else |
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418 { |
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419 return true; |
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420 } |
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421 } |
1145
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422 |
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423 |
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424 bool ServerContext::DeleteResource(Json::Value& target, |
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425 const std::string& uuid, |
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426 ResourceType expectedType) |
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427 { |
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428 return index_.DeleteResource(target, uuid, expectedType); |
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429 } |
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430 |
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431 |
1198 | 432 void ServerContext::SignalChange(const ServerIndexChange& change) |
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433 { |
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434 pendingChanges_.Enqueue(change.Clone()); |
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435 } |
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436 |
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437 |
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438 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
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439 { |
1459 | 440 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
441 | |
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442 plugins_ = &plugins; |
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443 |
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444 // TODO REFACTOR THIS |
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445 listeners_.clear(); |
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446 listeners_.push_back(ServerListener(lua_, "Lua")); |
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447 listeners_.push_back(ServerListener(plugins, "plugin")); |
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448 } |
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449 |
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450 |
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451 void ServerContext::ResetPlugins() |
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452 { |
1459 | 453 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
454 | |
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455 plugins_ = NULL; |
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456 |
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457 // TODO REFACTOR THIS |
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458 listeners_.clear(); |
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459 listeners_.push_back(ServerListener(lua_, "Lua")); |
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460 } |
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461 |
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462 |
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463 bool ServerContext::HasPlugins() const |
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464 { |
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465 return (plugins_ != NULL); |
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466 } |
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467 |
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468 |
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469 const OrthancPlugins& ServerContext::GetPlugins() const |
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470 { |
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471 if (HasPlugins()) |
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472 { |
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473 return *plugins_; |
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474 } |
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475 else |
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476 { |
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477 throw OrthancException(ErrorCode_InternalError); |
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478 } |
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479 } |
224 | 480 } |