Mercurial > hg > orthanc
annotate OrthancServer/Sources/Database/SQLiteDatabaseWrapper.cpp @ 5498:c5a274851b23 pg-transactions
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 24 Jan 2024 14:17:51 +0100 |
parents | 4dd50c4b985a |
children | 0d433132b249 |
rev | line source |
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183 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2024 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
183 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
9 * modify it under the terms of the GNU General Public License as | |
10 * published by the Free Software Foundation, either version 3 of the | |
11 * License, or (at your option) any later version. | |
12 * | |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
16 * General Public License for more details. | |
17 * | |
18 * You should have received a copy of the GNU General Public License | |
19 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
20 **/ | |
21 | |
22 | |
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23 #include "../PrecompiledHeadersServer.h" |
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24 #include "SQLiteDatabaseWrapper.h" |
183 | 25 |
4045 | 26 #include "../../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
27 #include "../../../OrthancFramework/Sources/Logging.h" | |
28 #include "../../../OrthancFramework/Sources/SQLite/Transaction.h" | |
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29 #include "../Search/ISqlLookupFormatter.h" |
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30 #include "../ServerToolbox.h" |
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31 #include "Compatibility/ICreateInstance.h" |
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32 #include "Compatibility/IGetChildrenMetadata.h" |
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33 #include "Compatibility/ILookupResourceAndParent.h" |
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34 #include "Compatibility/ISetResourcesContent.h" |
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35 #include "VoidDatabaseListener.h" |
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36 |
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37 #include <OrthancServerResources.h> |
183 | 38 |
39 #include <stdio.h> | |
1247 | 40 #include <boost/lexical_cast.hpp> |
183 | 41 |
42 namespace Orthanc | |
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43 { |
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44 class SQLiteDatabaseWrapper::LookupFormatter : public ISqlLookupFormatter |
183 | 45 { |
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46 private: |
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47 std::list<std::string> values_; |
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48 |
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49 public: |
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50 virtual std::string GenerateParameter(const std::string& value) ORTHANC_OVERRIDE |
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51 { |
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52 values_.push_back(value); |
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53 return "?"; |
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54 } |
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55 |
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56 virtual std::string FormatResourceType(ResourceType level) ORTHANC_OVERRIDE |
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57 { |
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58 return boost::lexical_cast<std::string>(level); |
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59 } |
183 | 60 |
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61 virtual std::string FormatWildcardEscape() ORTHANC_OVERRIDE |
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62 { |
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63 return "ESCAPE '\\'"; |
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64 } |
1158 | 65 |
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66 virtual bool IsEscapeBrackets() const ORTHANC_OVERRIDE |
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67 { |
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68 return false; |
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69 } |
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70 |
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71 void Bind(SQLite::Statement& statement) const |
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72 { |
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73 size_t pos = 0; |
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74 |
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75 for (std::list<std::string>::const_iterator |
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76 it = values_.begin(); it != values_.end(); ++it, pos++) |
1158 | 77 { |
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78 statement.BindString(pos, *it); |
1158 | 79 } |
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80 } |
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81 }; |
1158 | 82 |
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83 |
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84 class SQLiteDatabaseWrapper::SignalRemainingAncestor : public SQLite::IScalarFunction |
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85 { |
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86 private: |
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87 bool hasRemainingAncestor_; |
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88 std::string remainingPublicId_; |
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89 ResourceType remainingType_; |
660 | 90 |
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91 public: |
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92 SignalRemainingAncestor() : |
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93 hasRemainingAncestor_(false) |
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94 { |
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95 } |
183 | 96 |
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97 void Reset() |
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98 { |
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99 hasRemainingAncestor_ = false; |
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100 } |
183 | 101 |
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102 virtual const char* GetName() const ORTHANC_OVERRIDE |
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103 { |
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104 return "SignalRemainingAncestor"; |
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105 } |
183 | 106 |
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107 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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108 { |
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109 return 2; |
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110 } |
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111 |
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112 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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113 { |
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114 CLOG(TRACE, SQLITE) << "There exists a remaining ancestor with public ID \"" |
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115 << context.GetStringValue(0) << "\" of type " |
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116 << context.GetIntValue(1); |
183 | 117 |
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118 if (!hasRemainingAncestor_ || |
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119 remainingType_ >= context.GetIntValue(1)) |
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120 { |
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121 hasRemainingAncestor_ = true; |
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122 remainingPublicId_ = context.GetStringValue(0); |
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123 remainingType_ = static_cast<ResourceType>(context.GetIntValue(1)); |
183 | 124 } |
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125 } |
183 | 126 |
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127 bool HasRemainingAncestor() const |
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128 { |
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129 return hasRemainingAncestor_; |
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130 } |
183 | 131 |
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132 const std::string& GetRemainingAncestorId() const |
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133 { |
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134 assert(hasRemainingAncestor_); |
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135 return remainingPublicId_; |
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136 } |
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137 |
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138 ResourceType GetRemainingAncestorType() const |
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139 { |
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140 assert(hasRemainingAncestor_); |
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141 return remainingType_; |
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142 } |
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143 }; |
183 | 144 |
145 | |
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146 class SQLiteDatabaseWrapper::TransactionBase : |
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147 public SQLiteDatabaseWrapper::UnitTestsTransaction, |
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148 public Compatibility::ICreateInstance, |
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149 public Compatibility::IGetChildrenMetadata, |
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150 public Compatibility::ILookupResourceAndParent, |
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151 public Compatibility::ISetResourcesContent |
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152 { |
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153 private: |
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154 void AnswerLookup(std::list<std::string>& resourcesId, |
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155 std::list<std::string>& instancesId, |
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156 ResourceType level) |
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157 { |
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158 resourcesId.clear(); |
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159 instancesId.clear(); |
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160 |
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161 std::unique_ptr<SQLite::Statement> statement; |
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162 |
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163 switch (level) |
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164 { |
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165 case ResourceType_Patient: |
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166 { |
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167 statement.reset( |
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168 new SQLite::Statement( |
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169 db_, SQLITE_FROM_HERE, |
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170 "SELECT patients.publicId, instances.publicID FROM Lookup AS patients " |
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171 "INNER JOIN Resources studies ON patients.internalId=studies.parentId " |
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172 "INNER JOIN Resources series ON studies.internalId=series.parentId " |
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173 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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174 "GROUP BY patients.publicId")); |
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175 |
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176 break; |
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177 } |
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178 |
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179 case ResourceType_Study: |
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180 { |
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181 statement.reset( |
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182 new SQLite::Statement( |
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183 db_, SQLITE_FROM_HERE, |
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184 "SELECT studies.publicId, instances.publicID FROM Lookup AS studies " |
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185 "INNER JOIN Resources series ON studies.internalId=series.parentId " |
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186 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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187 "GROUP BY studies.publicId")); |
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188 |
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189 break; |
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190 } |
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191 |
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192 case ResourceType_Series: |
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193 { |
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194 statement.reset( |
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195 new SQLite::Statement( |
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196 db_, SQLITE_FROM_HERE, |
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197 "SELECT series.publicId, instances.publicID FROM Lookup AS series " |
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198 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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199 "GROUP BY series.publicId")); |
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200 |
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201 break; |
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202 } |
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203 |
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204 case ResourceType_Instance: |
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205 { |
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206 statement.reset( |
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207 new SQLite::Statement( |
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208 db_, SQLITE_FROM_HERE, "SELECT publicId, publicId FROM Lookup")); |
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209 |
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210 break; |
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211 } |
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212 |
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213 default: |
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214 throw OrthancException(ErrorCode_InternalError); |
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215 } |
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216 |
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217 assert(statement.get() != NULL); |
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218 |
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219 while (statement->Step()) |
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220 { |
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221 resourcesId.push_back(statement->ColumnString(0)); |
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222 instancesId.push_back(statement->ColumnString(1)); |
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223 } |
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224 } |
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225 |
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226 |
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227 void ClearTable(const std::string& tableName) |
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228 { |
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229 db_.Execute("DELETE FROM " + tableName); |
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230 } |
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231 |
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232 |
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233 void GetChangesInternal(std::list<ServerIndexChange>& target, |
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234 bool& done, |
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235 SQLite::Statement& s, |
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236 uint32_t limit) |
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237 { |
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238 target.clear(); |
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239 |
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240 while (target.size() < limit && s.Step()) |
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241 { |
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242 int64_t seq = s.ColumnInt64(0); |
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243 ChangeType changeType = static_cast<ChangeType>(s.ColumnInt(1)); |
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244 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(3)); |
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245 const std::string& date = s.ColumnString(4); |
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246 |
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247 int64_t internalId = s.ColumnInt64(2); |
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248 std::string publicId = GetPublicId(internalId); |
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249 |
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250 target.push_back(ServerIndexChange(seq, changeType, resourceType, publicId, date)); |
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251 } |
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252 |
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253 done = !(target.size() == limit && s.Step()); |
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254 } |
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255 |
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256 |
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257 void GetExportedResourcesInternal(std::list<ExportedResource>& target, |
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258 bool& done, |
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259 SQLite::Statement& s, |
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260 uint32_t limit) |
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261 { |
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262 target.clear(); |
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263 |
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264 while (target.size() < limit && s.Step()) |
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265 { |
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266 int64_t seq = s.ColumnInt64(0); |
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267 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(1)); |
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268 std::string publicId = s.ColumnString(2); |
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269 |
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270 ExportedResource resource(seq, |
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271 resourceType, |
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272 publicId, |
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273 s.ColumnString(3), // modality |
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274 s.ColumnString(8), // date |
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275 s.ColumnString(4), // patient ID |
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276 s.ColumnString(5), // study instance UID |
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277 s.ColumnString(6), // series instance UID |
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278 s.ColumnString(7)); // sop instance UID |
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279 |
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280 target.push_back(resource); |
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281 } |
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282 |
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283 done = !(target.size() == limit && s.Step()); |
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284 } |
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285 |
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286 |
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287 void GetChildren(std::list<std::string>& childrenPublicIds, |
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288 int64_t id) |
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289 { |
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290 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
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291 s.BindInt64(0, id); |
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292 |
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293 childrenPublicIds.clear(); |
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294 while (s.Step()) |
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295 { |
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296 childrenPublicIds.push_back(s.ColumnString(0)); |
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297 } |
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298 } |
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299 |
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300 boost::mutex::scoped_lock lock_; |
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301 IDatabaseListener& listener_; |
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302 SignalRemainingAncestor& signalRemainingAncestor_; |
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303 const IDatabaseWrapper::Capabilities& dbCapabilities_; |
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304 |
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305 public: |
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306 TransactionBase(boost::mutex& mutex, |
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307 SQLite::Connection& db, |
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308 IDatabaseListener& listener, |
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309 SignalRemainingAncestor& signalRemainingAncestor, |
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310 const IDatabaseWrapper::Capabilities& dbCapabilities) : |
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311 UnitTestsTransaction(db), |
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312 lock_(mutex), |
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313 listener_(listener), |
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314 signalRemainingAncestor_(signalRemainingAncestor), |
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315 dbCapabilities_(dbCapabilities) |
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316 { |
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317 } |
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318 |
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319 virtual const IDatabaseWrapper::Capabilities& GetDatabaseCapabilities() const ORTHANC_OVERRIDE |
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320 { |
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321 return dbCapabilities_; |
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322 } |
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323 |
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324 IDatabaseListener& GetListener() const |
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325 { |
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326 return listener_; |
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327 } |
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328 |
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329 |
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330 virtual void AddAttachment(int64_t id, |
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331 const FileInfo& attachment, |
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332 int64_t revision) ORTHANC_OVERRIDE |
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333 { |
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334 // TODO - REVISIONS |
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335 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO AttachedFiles (id, fileType, uuid, compressedSize, uncompressedSize, compressionType, uncompressedMD5, compressedMD5) VALUES(?, ?, ?, ?, ?, ?, ?, ?)"); |
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336 s.BindInt64(0, id); |
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337 s.BindInt(1, attachment.GetContentType()); |
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338 s.BindString(2, attachment.GetUuid()); |
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339 s.BindInt64(3, attachment.GetCompressedSize()); |
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340 s.BindInt64(4, attachment.GetUncompressedSize()); |
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341 s.BindInt(5, attachment.GetCompressionType()); |
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342 s.BindString(6, attachment.GetUncompressedMD5()); |
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343 s.BindString(7, attachment.GetCompressedMD5()); |
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344 s.Run(); |
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345 } |
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346 |
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347 |
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348 virtual void ApplyLookupResources(std::list<std::string>& resourcesId, |
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349 std::list<std::string>* instancesId, |
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350 const std::vector<DatabaseConstraint>& lookup, |
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351 ResourceType queryLevel, |
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352 const std::set<std::string>& labels, |
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353 LabelsConstraint labelsConstraint, |
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354 uint32_t limit) ORTHANC_OVERRIDE |
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355 { |
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356 LookupFormatter formatter; |
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357 |
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358 std::string sql; |
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359 LookupFormatter::Apply(sql, formatter, lookup, queryLevel, labels, labelsConstraint, limit); |
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360 |
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361 sql = "CREATE TEMPORARY TABLE Lookup AS " + sql; |
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362 |
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363 { |
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364 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DROP TABLE IF EXISTS Lookup"); |
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365 s.Run(); |
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366 } |
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367 |
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368 { |
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369 SQLite::Statement statement(db_, sql); |
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370 formatter.Bind(statement); |
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371 statement.Run(); |
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372 } |
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373 |
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374 if (instancesId != NULL) |
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375 { |
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376 AnswerLookup(resourcesId, *instancesId, queryLevel); |
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377 } |
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378 else |
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379 { |
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380 resourcesId.clear(); |
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381 |
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382 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Lookup"); |
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383 |
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384 while (s.Step()) |
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385 { |
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386 resourcesId.push_back(s.ColumnString(0)); |
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387 } |
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388 } |
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389 } |
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390 |
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391 |
4592 | 392 // From the "ICreateInstance" interface |
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393 virtual void AttachChild(int64_t parent, |
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394 int64_t child) ORTHANC_OVERRIDE |
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395 { |
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396 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); |
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397 s.BindInt64(0, parent); |
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398 s.BindInt64(1, child); |
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399 s.Run(); |
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400 } |
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401 |
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402 |
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403 virtual void ClearChanges() ORTHANC_OVERRIDE |
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404 { |
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405 ClearTable("Changes"); |
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406 } |
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407 |
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408 virtual void ClearExportedResources() ORTHANC_OVERRIDE |
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409 { |
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410 ClearTable("ExportedResources"); |
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411 } |
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412 |
1241 | 413 |
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414 virtual void ClearMainDicomTags(int64_t id) ORTHANC_OVERRIDE |
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415 { |
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416 { |
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417 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM DicomIdentifiers WHERE id=?"); |
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418 s.BindInt64(0, id); |
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419 s.Run(); |
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420 } |
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421 |
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422 { |
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423 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM MainDicomTags WHERE id=?"); |
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424 s.BindInt64(0, id); |
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425 s.Run(); |
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426 } |
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427 } |
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428 |
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429 |
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430 virtual bool CreateInstance(CreateInstanceResult& result, |
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431 int64_t& instanceId, |
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432 const std::string& patient, |
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433 const std::string& study, |
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434 const std::string& series, |
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435 const std::string& instance) ORTHANC_OVERRIDE |
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436 { |
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437 return ICreateInstance::Apply |
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438 (*this, result, instanceId, patient, study, series, instance); |
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439 } |
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440 |
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441 |
4592 | 442 // From the "ICreateInstance" interface |
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443 virtual int64_t CreateResource(const std::string& publicId, |
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444 ResourceType type) ORTHANC_OVERRIDE |
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445 { |
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446 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources (internalId, resourceType, publicId, parentId) VALUES(NULL, ?, ?, NULL)"); |
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447 s.BindInt(0, type); |
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448 s.BindString(1, publicId); |
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449 s.Run(); |
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450 return db_.GetLastInsertRowId(); |
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451 } |
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452 |
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453 |
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454 virtual void DeleteAttachment(int64_t id, |
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455 FileContentType attachment) ORTHANC_OVERRIDE |
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456 { |
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457 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM AttachedFiles WHERE id=? AND fileType=?"); |
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458 s.BindInt64(0, id); |
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459 s.BindInt(1, attachment); |
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460 s.Run(); |
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461 } |
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462 |
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463 |
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464 virtual void DeleteMetadata(int64_t id, |
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465 MetadataType type) ORTHANC_OVERRIDE |
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466 { |
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467 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Metadata WHERE id=? and type=?"); |
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468 s.BindInt64(0, id); |
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469 s.BindInt(1, type); |
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470 s.Run(); |
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471 } |
193
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472 |
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473 |
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474 virtual void DeleteResource(int64_t id) ORTHANC_OVERRIDE |
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475 { |
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476 signalRemainingAncestor_.Reset(); |
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477 |
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478 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Resources WHERE internalId=?"); |
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479 s.BindInt64(0, id); |
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480 s.Run(); |
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481 |
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482 if (signalRemainingAncestor_.HasRemainingAncestor()) |
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483 { |
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484 listener_.SignalRemainingAncestor(signalRemainingAncestor_.GetRemainingAncestorType(), |
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485 signalRemainingAncestor_.GetRemainingAncestorId()); |
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486 } |
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487 } |
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488 |
183 | 489 |
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490 virtual void GetAllMetadata(std::map<MetadataType, std::string>& target, |
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491 int64_t id) ORTHANC_OVERRIDE |
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492 { |
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493 target.clear(); |
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494 |
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495 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type, value FROM Metadata WHERE id=?"); |
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496 s.BindInt64(0, id); |
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497 |
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498 while (s.Step()) |
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499 { |
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500 MetadataType key = static_cast<MetadataType>(s.ColumnInt(0)); |
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501 target[key] = s.ColumnString(1); |
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502 } |
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503 } |
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504 |
183 | 505 |
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506 virtual void GetAllPublicIds(std::list<std::string>& target, |
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507 ResourceType resourceType) ORTHANC_OVERRIDE |
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508 { |
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509 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=?"); |
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510 s.BindInt(0, resourceType); |
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511 |
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512 target.clear(); |
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513 while (s.Step()) |
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514 { |
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515 target.push_back(s.ColumnString(0)); |
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516 } |
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517 } |
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518 |
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519 |
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520 virtual void GetAllPublicIds(std::list<std::string>& target, |
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521 ResourceType resourceType, |
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522 int64_t since, |
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523 uint32_t limit) ORTHANC_OVERRIDE |
183 | 524 { |
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525 if (limit == 0) |
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526 { |
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527 target.clear(); |
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528 return; |
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529 } |
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530 |
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531 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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532 "SELECT publicId FROM Resources WHERE " |
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533 "resourceType=? LIMIT ? OFFSET ?"); |
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534 s.BindInt(0, resourceType); |
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535 s.BindInt64(1, limit); |
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536 s.BindInt64(2, since); |
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537 |
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538 target.clear(); |
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539 while (s.Step()) |
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540 { |
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541 target.push_back(s.ColumnString(0)); |
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542 } |
183 | 543 } |
544 | |
545 | |
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546 virtual void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
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547 bool& done /*out*/, |
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548 int64_t since, |
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549 uint32_t limit) ORTHANC_OVERRIDE |
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550 { |
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551 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes WHERE seq>? ORDER BY seq LIMIT ?"); |
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552 s.BindInt64(0, since); |
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553 s.BindInt(1, limit + 1); |
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554 GetChangesInternal(target, done, s, limit); |
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555 } |
183 | 556 |
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557 |
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558 virtual void GetChildrenMetadata(std::list<std::string>& target, |
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559 int64_t resourceId, |
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560 MetadataType metadata) ORTHANC_OVERRIDE |
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561 { |
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562 IGetChildrenMetadata::Apply(*this, target, resourceId, metadata); |
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563 } |
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564 |
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565 |
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566 virtual void GetChildrenInternalId(std::list<int64_t>& target, |
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567 int64_t id) ORTHANC_OVERRIDE |
183 | 568 { |
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569 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.internalId FROM Resources AS a, Resources AS b " |
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570 "WHERE a.parentId = b.internalId AND b.internalId = ?"); |
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571 s.BindInt64(0, id); |
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572 |
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573 target.clear(); |
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574 |
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575 while (s.Step()) |
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576 { |
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577 target.push_back(s.ColumnInt64(0)); |
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578 } |
183 | 579 } |
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580 |
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581 |
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582 virtual void GetChildrenPublicId(std::list<std::string>& target, |
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583 int64_t id) ORTHANC_OVERRIDE |
183 | 584 { |
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585 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " |
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586 "WHERE a.parentId = b.internalId AND b.internalId = ?"); |
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587 s.BindInt64(0, id); |
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588 |
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589 target.clear(); |
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590 |
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591 while (s.Step()) |
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592 { |
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593 target.push_back(s.ColumnString(0)); |
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594 } |
183 | 595 } |
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596 |
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597 |
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598 virtual void GetExportedResources(std::list<ExportedResource>& target, |
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599 bool& done, |
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600 int64_t since, |
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601 uint32_t limit) ORTHANC_OVERRIDE |
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602 { |
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603 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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604 "SELECT * FROM ExportedResources WHERE seq>? ORDER BY seq LIMIT ?"); |
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605 s.BindInt64(0, since); |
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606 s.BindInt(1, limit + 1); |
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607 GetExportedResourcesInternal(target, done, s, limit); |
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608 } |
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609 |
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610 |
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611 virtual void GetLastChange(std::list<ServerIndexChange>& target /*out*/) ORTHANC_OVERRIDE |
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612 { |
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613 bool done; // Ignored |
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614 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes ORDER BY seq DESC LIMIT 1"); |
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615 GetChangesInternal(target, done, s, 1); |
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616 } |
183 | 617 |
618 | |
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619 int64_t GetLastChangeIndex() ORTHANC_OVERRIDE |
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620 { |
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621 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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622 "SELECT seq FROM sqlite_sequence WHERE name='Changes'"); |
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623 |
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624 if (s.Step()) |
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625 { |
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626 int64_t c = s.ColumnInt(0); |
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627 assert(!s.Step()); |
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628 return c; |
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629 } |
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630 else |
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631 { |
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632 // No change has been recorded so far in the database |
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633 return 0; |
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634 } |
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635 } |
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636 |
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637 |
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638 virtual void GetLastExportedResource(std::list<ExportedResource>& target) ORTHANC_OVERRIDE |
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639 { |
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640 bool done; // Ignored |
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641 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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642 "SELECT * FROM ExportedResources ORDER BY seq DESC LIMIT 1"); |
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643 GetExportedResourcesInternal(target, done, s, 1); |
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644 } |
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645 |
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646 |
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647 virtual void GetMainDicomTags(DicomMap& map, |
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648 int64_t id) ORTHANC_OVERRIDE |
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649 { |
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650 map.Clear(); |
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651 |
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652 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM MainDicomTags WHERE id=?"); |
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653 s.BindInt64(0, id); |
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654 while (s.Step()) |
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655 { |
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656 map.SetValue(s.ColumnInt(1), |
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657 s.ColumnInt(2), |
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658 s.ColumnString(3), false); |
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659 } |
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660 } |
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661 |
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662 |
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663 virtual std::string GetPublicId(int64_t resourceId) ORTHANC_OVERRIDE |
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664 { |
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665 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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666 "SELECT publicId FROM Resources WHERE internalId=?"); |
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667 s.BindInt64(0, resourceId); |
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668 |
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669 if (s.Step()) |
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670 { |
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671 return s.ColumnString(0); |
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672 } |
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673 else |
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674 { |
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675 throw OrthancException(ErrorCode_UnknownResource); |
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676 } |
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677 } |
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678 |
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679 |
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680 virtual uint64_t GetResourcesCount(ResourceType resourceType) ORTHANC_OVERRIDE |
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681 { |
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682 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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683 "SELECT COUNT(*) FROM Resources WHERE resourceType=?"); |
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684 s.BindInt(0, resourceType); |
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685 |
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686 if (!s.Step()) |
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687 { |
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688 return 0; |
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689 } |
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690 else |
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691 { |
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692 int64_t c = s.ColumnInt(0); |
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693 assert(!s.Step()); |
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694 return c; |
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695 } |
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696 } |
183 | 697 |
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698 |
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699 virtual ResourceType GetResourceType(int64_t resourceId) ORTHANC_OVERRIDE |
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700 { |
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701 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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702 "SELECT resourceType FROM Resources WHERE internalId=?"); |
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703 s.BindInt64(0, resourceId); |
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704 |
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705 if (s.Step()) |
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706 { |
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707 return static_cast<ResourceType>(s.ColumnInt(0)); |
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708 } |
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709 else |
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710 { |
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711 throw OrthancException(ErrorCode_UnknownResource); |
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712 } |
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713 } |
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714 |
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715 |
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716 virtual uint64_t GetTotalCompressedSize() ORTHANC_OVERRIDE |
218 | 717 { |
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718 // Old SQL query that was used in Orthanc <= 1.5.0: |
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719 // SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(compressedSize) FROM AttachedFiles"); |
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720 |
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721 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalIntegers WHERE key=0"); |
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722 s.Run(); |
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723 return static_cast<uint64_t>(s.ColumnInt64(0)); |
218 | 724 } |
183 | 725 |
726 | |
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727 virtual uint64_t GetTotalUncompressedSize() ORTHANC_OVERRIDE |
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728 { |
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729 // Old SQL query that was used in Orthanc <= 1.5.0: |
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730 // SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(uncompressedSize) FROM AttachedFiles"); |
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731 |
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732 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalIntegers WHERE key=1"); |
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733 s.Run(); |
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734 return static_cast<uint64_t>(s.ColumnInt64(0)); |
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735 } |
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736 |
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737 |
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738 virtual bool IsDiskSizeAbove(uint64_t threshold) ORTHANC_OVERRIDE |
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739 { |
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740 return GetTotalCompressedSize() > threshold; |
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741 } |
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742 |
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743 |
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744 virtual bool IsProtectedPatient(int64_t internalId) ORTHANC_OVERRIDE |
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745 { |
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746 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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747 "SELECT * FROM PatientRecyclingOrder WHERE patientId = ?"); |
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748 s.BindInt64(0, internalId); |
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749 return !s.Step(); |
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750 } |
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|
751 |
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752 |
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|
753 virtual void ListAvailableAttachments(std::set<FileContentType>& target, |
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754 int64_t id) ORTHANC_OVERRIDE |
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755 { |
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756 target.clear(); |
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|
757 |
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|
758 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
759 "SELECT fileType FROM AttachedFiles WHERE id=?"); |
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|
760 s.BindInt64(0, id); |
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|
761 |
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|
762 while (s.Step()) |
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763 { |
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|
764 target.insert(static_cast<FileContentType>(s.ColumnInt(0))); |
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|
765 } |
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766 } |
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|
767 |
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changeset
|
768 |
5216
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|
769 virtual void LogChange(ChangeType changeType, |
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|
770 ResourceType resourceType, |
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771 int64_t internalId, |
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772 const std::string& /* publicId - unused */, |
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773 const std::string& date) ORTHANC_OVERRIDE |
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774 { |
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Alain Mazy <am@osimis.io>
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|
775 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Changes (seq, changeType, internalId, resourceType, date) VALUES(NULL, ?, ?, ?, ?)"); |
5216
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|
776 s.BindInt(0, changeType); |
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|
777 s.BindInt64(1, internalId); |
5216
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|
778 s.BindInt(2, resourceType); |
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|
779 s.BindString(3, date); |
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780 s.Run(); |
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781 } |
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|
782 |
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changeset
|
783 |
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|
784 virtual void LogExportedResource(const ExportedResource& resource) ORTHANC_OVERRIDE |
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785 { |
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changeset
|
786 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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changeset
|
787 "INSERT INTO ExportedResources (seq, resourceType, publicId, remoteModality, patientId, studyInstanceUid, seriesInstanceUid, sopInstanceUid, date) VALUES(NULL, ?, ?, ?, ?, ?, ?, ?, ?)"); |
4591
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788 |
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789 s.BindInt(0, resource.GetResourceType()); |
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|
790 s.BindString(1, resource.GetPublicId()); |
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791 s.BindString(2, resource.GetModality()); |
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|
792 s.BindString(3, resource.GetPatientId()); |
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|
793 s.BindString(4, resource.GetStudyInstanceUid()); |
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|
794 s.BindString(5, resource.GetSeriesInstanceUid()); |
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|
795 s.BindString(6, resource.GetSopInstanceUid()); |
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|
796 s.BindString(7, resource.GetDate()); |
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797 s.Run(); |
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|
798 } |
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|
799 |
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changeset
|
800 |
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changeset
|
801 virtual bool LookupAttachment(FileInfo& attachment, |
4627
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802 int64_t& revision, |
4591
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|
803 int64_t id, |
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|
804 FileContentType contentType) ORTHANC_OVERRIDE |
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|
805 { |
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diff
changeset
|
806 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
807 "SELECT uuid, uncompressedSize, compressionType, compressedSize, " |
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diff
changeset
|
808 "uncompressedMD5, compressedMD5 FROM AttachedFiles WHERE id=? AND fileType=?"); |
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|
809 s.BindInt64(0, id); |
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changeset
|
810 s.BindInt(1, contentType); |
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|
811 |
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diff
changeset
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812 if (!s.Step()) |
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diff
changeset
|
813 { |
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changeset
|
814 return false; |
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diff
changeset
|
815 } |
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changeset
|
816 else |
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diff
changeset
|
817 { |
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|
818 attachment = FileInfo(s.ColumnString(0), |
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changeset
|
819 contentType, |
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|
820 s.ColumnInt64(1), |
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|
821 s.ColumnString(4), |
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|
822 static_cast<CompressionType>(s.ColumnInt(2)), |
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changeset
|
823 s.ColumnInt64(3), |
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diff
changeset
|
824 s.ColumnString(5)); |
4627
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|
825 revision = 0; // TODO - REVISIONS |
4591
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changeset
|
826 return true; |
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diff
changeset
|
827 } |
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diff
changeset
|
828 } |
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diff
changeset
|
829 |
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diff
changeset
|
830 |
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changeset
|
831 virtual bool LookupGlobalProperty(std::string& target, |
4607
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changeset
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832 GlobalProperty property, |
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diff
changeset
|
833 bool shared) ORTHANC_OVERRIDE |
4591
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diff
changeset
|
834 { |
4607
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diff
changeset
|
835 // The "shared" info is not used by the SQLite database, as it |
f75c63aa9de0
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changeset
|
836 // can only be used by one Orthanc server. |
f75c63aa9de0
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diff
changeset
|
837 |
4591
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changeset
|
838 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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changeset
|
839 "SELECT value FROM GlobalProperties WHERE property=?"); |
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diff
changeset
|
840 s.BindInt(0, property); |
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changeset
|
841 |
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diff
changeset
|
842 if (!s.Step()) |
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diff
changeset
|
843 { |
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diff
changeset
|
844 return false; |
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parents:
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diff
changeset
|
845 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
846 else |
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4589
diff
changeset
|
847 { |
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parents:
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diff
changeset
|
848 target = s.ColumnString(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
849 return true; |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
850 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
851 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
852 |
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parents:
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diff
changeset
|
853 |
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diff
changeset
|
854 virtual bool LookupMetadata(std::string& target, |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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4607
diff
changeset
|
855 int64_t& revision, |
4591
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diff
changeset
|
856 int64_t id, |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
857 MetadataType type) ORTHANC_OVERRIDE |
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parents:
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diff
changeset
|
858 { |
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parents:
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diff
changeset
|
859 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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parents:
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diff
changeset
|
860 "SELECT value FROM Metadata WHERE id=? AND type=?"); |
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diff
changeset
|
861 s.BindInt64(0, id); |
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diff
changeset
|
862 s.BindInt(1, type); |
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parents:
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diff
changeset
|
863 |
ff8170d17d90
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parents:
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diff
changeset
|
864 if (!s.Step()) |
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parents:
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diff
changeset
|
865 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
866 return false; |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
867 } |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
868 else |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
869 { |
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parents:
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diff
changeset
|
870 target = s.ColumnString(0); |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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4607
diff
changeset
|
871 revision = 0; // TODO - REVISIONS |
4591
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diff
changeset
|
872 return true; |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
873 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
874 } |
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parents:
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diff
changeset
|
875 |
ff8170d17d90
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diff
changeset
|
876 |
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diff
changeset
|
877 virtual bool LookupParent(int64_t& parentId, |
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changeset
|
878 int64_t resourceId) ORTHANC_OVERRIDE |
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diff
changeset
|
879 { |
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diff
changeset
|
880 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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diff
changeset
|
881 "SELECT parentId FROM Resources WHERE internalId=?"); |
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changeset
|
882 s.BindInt64(0, resourceId); |
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changeset
|
883 |
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diff
changeset
|
884 if (!s.Step()) |
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diff
changeset
|
885 { |
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diff
changeset
|
886 throw OrthancException(ErrorCode_UnknownResource); |
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diff
changeset
|
887 } |
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diff
changeset
|
888 |
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diff
changeset
|
889 if (s.ColumnIsNull(0)) |
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diff
changeset
|
890 { |
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4589
diff
changeset
|
891 return false; |
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diff
changeset
|
892 } |
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diff
changeset
|
893 else |
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diff
changeset
|
894 { |
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diff
changeset
|
895 parentId = s.ColumnInt(0); |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
896 return true; |
ff8170d17d90
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diff
changeset
|
897 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
898 } |
ff8170d17d90
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diff
changeset
|
899 |
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diff
changeset
|
900 |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
901 virtual bool LookupResourceAndParent(int64_t& id, |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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changeset
|
902 ResourceType& type, |
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diff
changeset
|
903 std::string& parentPublicId, |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
904 const std::string& publicId) ORTHANC_OVERRIDE |
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diff
changeset
|
905 { |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
906 return ILookupResourceAndParent::Apply(*this, id, type, parentPublicId, publicId); |
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diff
changeset
|
907 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
908 |
ff8170d17d90
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diff
changeset
|
909 |
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diff
changeset
|
910 virtual bool LookupResource(int64_t& id, |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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911 ResourceType& type, |
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|
912 const std::string& publicId) ORTHANC_OVERRIDE |
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|
913 { |
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|
914 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
915 "SELECT internalId, resourceType FROM Resources WHERE publicId=?"); |
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|
916 s.BindString(0, publicId); |
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|
917 |
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918 if (!s.Step()) |
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|
919 { |
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920 return false; |
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|
921 } |
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922 else |
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|
923 { |
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924 id = s.ColumnInt(0); |
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925 type = static_cast<ResourceType>(s.ColumnInt(1)); |
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926 |
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927 // Check whether there is a single resource with this public id |
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928 assert(!s.Step()); |
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929 |
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|
930 return true; |
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|
931 } |
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|
932 } |
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933 |
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934 |
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|
935 virtual bool SelectPatientToRecycle(int64_t& internalId) ORTHANC_OVERRIDE |
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936 { |
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937 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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938 "SELECT patientId FROM PatientRecyclingOrder ORDER BY seq ASC LIMIT 1"); |
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|
939 |
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|
940 if (!s.Step()) |
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|
941 { |
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942 // No patient remaining or all the patients are protected |
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|
943 return false; |
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|
944 } |
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|
945 else |
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|
946 { |
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|
947 internalId = s.ColumnInt(0); |
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|
948 return true; |
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|
949 } |
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|
950 } |
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|
951 |
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|
952 |
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|
953 virtual bool SelectPatientToRecycle(int64_t& internalId, |
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|
954 int64_t patientIdToAvoid) ORTHANC_OVERRIDE |
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|
955 { |
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changeset
|
956 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
957 "SELECT patientId FROM PatientRecyclingOrder " |
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|
958 "WHERE patientId != ? ORDER BY seq ASC LIMIT 1"); |
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|
959 s.BindInt64(0, patientIdToAvoid); |
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|
960 |
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961 if (!s.Step()) |
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changeset
|
962 { |
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changeset
|
963 // No patient remaining or all the patients are protected |
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|
964 return false; |
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|
965 } |
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966 else |
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|
967 { |
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968 internalId = s.ColumnInt(0); |
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|
969 return true; |
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changeset
|
970 } |
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|
971 } |
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changeset
|
972 |
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|
973 |
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changeset
|
974 virtual void SetGlobalProperty(GlobalProperty property, |
4607
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|
975 bool shared, |
4591
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|
976 const std::string& value) ORTHANC_OVERRIDE |
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|
977 { |
4607
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|
978 // The "shared" info is not used by the SQLite database, as it |
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|
979 // can only be used by one Orthanc server. |
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changeset
|
980 |
5090
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changeset
|
981 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO GlobalProperties (property, value) VALUES(?, ?)"); |
4591
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|
982 s.BindInt(0, property); |
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|
983 s.BindString(1, value); |
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|
984 s.Run(); |
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|
985 } |
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|
986 |
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|
987 |
4592 | 988 // From the "ISetResourcesContent" interface |
4591
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989 virtual void SetIdentifierTag(int64_t id, |
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990 const DicomTag& tag, |
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|
991 const std::string& value) ORTHANC_OVERRIDE |
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992 { |
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993 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
4591
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|
994 s.BindInt64(0, id); |
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|
995 s.BindInt(1, tag.GetGroup()); |
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|
996 s.BindInt(2, tag.GetElement()); |
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997 s.BindString(3, value); |
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|
998 s.Run(); |
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999 } |
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|
1000 |
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|
1001 |
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|
1002 virtual void SetProtectedPatient(int64_t internalId, |
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|
1003 bool isProtected) ORTHANC_OVERRIDE |
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1004 { |
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|
1005 if (isProtected) |
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1006 { |
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|
1007 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
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|
1008 s.BindInt64(0, internalId); |
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|
1009 s.Run(); |
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1010 } |
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1011 else if (IsProtectedPatient(internalId)) |
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|
1012 { |
5090
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|
1013 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO PatientRecyclingOrder (seq, patientId) VALUES(NULL, ?)"); |
4591
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|
1014 s.BindInt64(0, internalId); |
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1015 s.Run(); |
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|
1016 } |
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|
1017 else |
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|
1018 { |
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|
1019 // Nothing to do: The patient is already unprotected |
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diff
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|
1020 } |
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|
1021 } |
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|
1022 |
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1023 |
4592 | 1024 // From the "ISetResourcesContent" interface |
4591
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1025 virtual void SetMainDicomTag(int64_t id, |
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|
1026 const DicomTag& tag, |
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|
1027 const std::string& value) ORTHANC_OVERRIDE |
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diff
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|
1028 { |
5090
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diff
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|
1029 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
4591
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|
1030 s.BindInt64(0, id); |
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|
1031 s.BindInt(1, tag.GetGroup()); |
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|
1032 s.BindInt(2, tag.GetElement()); |
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|
1033 s.BindString(3, value); |
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|
1034 s.Run(); |
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|
1035 } |
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|
1036 |
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1037 |
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1038 virtual void SetMetadata(int64_t id, |
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1039 MetadataType type, |
4623
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|
1040 const std::string& value, |
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1041 int64_t revision) ORTHANC_OVERRIDE |
4591
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|
1042 { |
4623
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|
1043 // TODO - REVISIONS |
5090
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1044 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO Metadata (id, type, value) VALUES(?, ?, ?)"); |
4591
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|
1045 s.BindInt64(0, id); |
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diff
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|
1046 s.BindInt(1, type); |
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|
1047 s.BindString(2, value); |
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1048 s.Run(); |
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|
1049 } |
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1050 |
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1051 |
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|
1052 virtual void SetResourcesContent(const Orthanc::ResourcesContent& content) ORTHANC_OVERRIDE |
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|
1053 { |
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diff
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|
1054 ISetResourcesContent::Apply(*this, content); |
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1055 } |
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1056 |
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1057 |
4592 | 1058 // From the "ICreateInstance" interface |
4591
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1059 virtual void TagMostRecentPatient(int64_t patient) ORTHANC_OVERRIDE |
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|
1060 { |
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|
1061 { |
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|
1062 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
1063 "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
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diff
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|
1064 s.BindInt64(0, patient); |
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|
1065 s.Run(); |
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|
1066 |
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|
1067 assert(db_.GetLastChangeCount() == 0 || |
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1068 db_.GetLastChangeCount() == 1); |
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|
1069 |
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|
1070 if (db_.GetLastChangeCount() == 0) |
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|
1071 { |
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diff
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1072 // The patient was protected, there was nothing to delete from the recycling order |
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|
1073 return; |
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|
1074 } |
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diff
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|
1075 } |
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1076 |
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|
1077 { |
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diff
changeset
|
1078 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
5090
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Alain Mazy <am@osimis.io>
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|
1079 "INSERT INTO PatientRecyclingOrder (seq, patientId) VALUES(NULL, ?)"); |
4591
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|
1080 s.BindInt64(0, patient); |
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changeset
|
1081 s.Run(); |
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|
1082 } |
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|
1083 } |
5220
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|
1084 |
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|
1085 |
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|
1086 virtual void AddLabel(int64_t resource, |
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|
1087 const std::string& label) ORTHANC_OVERRIDE |
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1088 { |
5221
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1089 if (label.empty()) |
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|
1090 { |
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|
1091 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
1092 } |
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|
1093 else |
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|
1094 { |
5256 | 1095 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR IGNORE INTO Labels (id, label) VALUES(?, ?)"); |
5221
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|
1096 s.BindInt64(0, resource); |
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1097 s.BindString(1, label); |
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1098 s.Run(); |
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|
1099 } |
5220
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1100 } |
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|
1101 |
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|
1102 |
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1103 virtual void RemoveLabel(int64_t resource, |
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1104 const std::string& label) ORTHANC_OVERRIDE |
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1105 { |
5221
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1106 if (label.empty()) |
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1107 { |
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|
1108 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1109 } |
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|
1110 else |
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|
1111 { |
5256 | 1112 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Labels WHERE id=? AND label=?"); |
5221
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|
1113 s.BindInt64(0, resource); |
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1114 s.BindString(1, label); |
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1115 s.Run(); |
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|
1116 } |
5220
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1117 } |
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|
1118 |
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1119 |
5221
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|
1120 virtual void ListLabels(std::set<std::string>& target, |
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|
1121 int64_t resource) ORTHANC_OVERRIDE |
5220
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1122 { |
5221
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|
1123 target.clear(); |
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|
1124 |
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|
1125 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
5256 | 1126 "SELECT label FROM Labels WHERE id=?"); |
5221
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|
1127 s.BindInt64(0, resource); |
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|
1128 |
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1129 while (s.Step()) |
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|
1130 { |
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|
1131 target.insert(s.ColumnString(0)); |
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diff
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|
1132 } |
5220
df39c7583a49
preparing virtual methods for labels
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diff
changeset
|
1133 } |
5249
f22c8fac764b
added "/tools/labels" to list all the labels that are associated with any resource
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diff
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|
1134 |
f22c8fac764b
added "/tools/labels" to list all the labels that are associated with any resource
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diff
changeset
|
1135 |
f22c8fac764b
added "/tools/labels" to list all the labels that are associated with any resource
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diff
changeset
|
1136 virtual void ListAllLabels(std::set<std::string>& target) ORTHANC_OVERRIDE |
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diff
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|
1137 { |
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diff
changeset
|
1138 target.clear(); |
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diff
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|
1139 |
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diff
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|
1140 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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diff
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|
1141 "SELECT DISTINCT label FROM Labels"); |
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|
1142 |
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diff
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|
1143 while (s.Step()) |
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diff
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|
1144 { |
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|
1145 target.insert(s.ColumnString(0)); |
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|
1146 } |
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diff
changeset
|
1147 } |
5455
176bc05f85f4
DB: new Capabilities class to manage future new methods from DB plugins + Added IncrementGlobalProperty
Alain Mazy <am@osimis.io>
parents:
5256
diff
changeset
|
1148 |
4591
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|
1149 }; |
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1150 |
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|
1151 |
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|
1152 class SQLiteDatabaseWrapper::SignalFileDeleted : public SQLite::IScalarFunction |
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|
1153 { |
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1154 private: |
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|
1155 SQLiteDatabaseWrapper& sqlite_; |
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|
1156 |
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|
1157 public: |
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|
1158 SignalFileDeleted(SQLiteDatabaseWrapper& sqlite) : |
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|
1159 sqlite_(sqlite) |
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|
1160 { |
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1161 } |
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1162 |
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1163 virtual const char* GetName() const ORTHANC_OVERRIDE |
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1164 { |
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1165 return "SignalFileDeleted"; |
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1166 } |
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1167 |
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1168 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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|
1169 { |
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1170 return 7; |
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|
1171 } |
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1172 |
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1173 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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1174 { |
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1175 if (sqlite_.activeTransaction_ != NULL) |
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1176 { |
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1177 std::string uncompressedMD5, compressedMD5; |
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1178 |
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1179 if (!context.IsNullValue(5)) |
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1180 { |
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1181 uncompressedMD5 = context.GetStringValue(5); |
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1182 } |
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1183 |
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1184 if (!context.IsNullValue(6)) |
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1185 { |
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1186 compressedMD5 = context.GetStringValue(6); |
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1187 } |
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1188 |
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1189 FileInfo info(context.GetStringValue(0), |
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1190 static_cast<FileContentType>(context.GetIntValue(1)), |
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1191 static_cast<uint64_t>(context.GetInt64Value(2)), |
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1192 uncompressedMD5, |
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1193 static_cast<CompressionType>(context.GetIntValue(3)), |
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1194 static_cast<uint64_t>(context.GetInt64Value(4)), |
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1195 compressedMD5); |
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1196 |
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1197 sqlite_.activeTransaction_->GetListener().SignalAttachmentDeleted(info); |
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1198 } |
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1199 } |
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1200 }; |
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1201 |
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1202 |
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1203 class SQLiteDatabaseWrapper::SignalResourceDeleted : public SQLite::IScalarFunction |
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1204 { |
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1205 private: |
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1206 SQLiteDatabaseWrapper& sqlite_; |
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1207 |
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1208 public: |
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1209 SignalResourceDeleted(SQLiteDatabaseWrapper& sqlite) : |
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1210 sqlite_(sqlite) |
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1211 { |
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1212 } |
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1213 |
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1214 virtual const char* GetName() const ORTHANC_OVERRIDE |
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1215 { |
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1216 return "SignalResourceDeleted"; |
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1217 } |
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1218 |
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1219 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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1220 { |
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1221 return 2; |
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1222 } |
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1223 |
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1224 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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1225 { |
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1226 if (sqlite_.activeTransaction_ != NULL) |
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1227 { |
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1228 sqlite_.activeTransaction_->GetListener(). |
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1229 SignalResourceDeleted(static_cast<ResourceType>(context.GetIntValue(1)), |
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1230 context.GetStringValue(0)); |
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1231 } |
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1232 } |
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1233 }; |
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1234 |
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1235 |
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|
1236 class SQLiteDatabaseWrapper::ReadWriteTransaction : public SQLiteDatabaseWrapper::TransactionBase |
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1237 { |
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1238 private: |
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|
1239 SQLiteDatabaseWrapper& that_; |
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1240 std::unique_ptr<SQLite::Transaction> transaction_; |
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1241 int64_t initialDiskSize_; |
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1242 |
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1243 public: |
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1244 ReadWriteTransaction(SQLiteDatabaseWrapper& that, |
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1245 IDatabaseListener& listener) : |
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1246 TransactionBase(that.mutex_, that.db_, listener, *that.signalRemainingAncestor_, that.GetDatabaseCapabilities()), |
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1247 that_(that), |
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1248 transaction_(new SQLite::Transaction(that_.db_)) |
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1249 { |
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1250 if (that_.activeTransaction_ != NULL) |
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1251 { |
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1252 throw OrthancException(ErrorCode_InternalError); |
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1253 } |
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1254 |
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1255 that_.activeTransaction_ = this; |
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1256 |
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1257 #if defined(NDEBUG) |
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1258 // Release mode |
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1259 initialDiskSize_ = 0; |
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1260 #else |
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1261 // Debug mode |
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1262 initialDiskSize_ = static_cast<int64_t>(GetTotalCompressedSize()); |
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1263 #endif |
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1264 } |
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1265 |
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1266 virtual ~ReadWriteTransaction() |
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1267 { |
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1268 assert(that_.activeTransaction_ != NULL); |
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1269 that_.activeTransaction_ = NULL; |
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1270 } |
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1271 |
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1272 void Begin() |
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1273 { |
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1274 transaction_->Begin(); |
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1275 } |
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1276 |
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1277 virtual void Rollback() ORTHANC_OVERRIDE |
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1278 { |
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1279 transaction_->Rollback(); |
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1280 } |
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1281 |
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1282 virtual void Commit(int64_t fileSizeDelta /* only used in debug */) ORTHANC_OVERRIDE |
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1283 { |
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1284 transaction_->Commit(); |
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1285 |
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1286 assert(initialDiskSize_ + fileSizeDelta >= 0 && |
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1287 initialDiskSize_ + fileSizeDelta == static_cast<int64_t>(GetTotalCompressedSize())); |
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1288 } |
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1289 }; |
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1290 |
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1291 |
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1292 class SQLiteDatabaseWrapper::ReadOnlyTransaction : public SQLiteDatabaseWrapper::TransactionBase |
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1293 { |
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1294 private: |
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1295 SQLiteDatabaseWrapper& that_; |
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1296 |
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1297 public: |
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1298 ReadOnlyTransaction(SQLiteDatabaseWrapper& that, |
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1299 IDatabaseListener& listener) : |
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1300 TransactionBase(that.mutex_, that.db_, listener, *that.signalRemainingAncestor_, that.GetDatabaseCapabilities()), |
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1301 that_(that) |
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1302 { |
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1303 if (that_.activeTransaction_ != NULL) |
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1304 { |
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1305 throw OrthancException(ErrorCode_InternalError); |
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1306 } |
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1307 |
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1308 that_.activeTransaction_ = this; |
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1309 } |
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1310 |
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1311 virtual ~ReadOnlyTransaction() |
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1312 { |
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1313 assert(that_.activeTransaction_ != NULL); |
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1314 that_.activeTransaction_ = NULL; |
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1315 } |
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1316 |
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1317 virtual void Rollback() ORTHANC_OVERRIDE |
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1318 { |
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1319 } |
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1320 |
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1321 virtual void Commit(int64_t fileSizeDelta /* only used in debug */) ORTHANC_OVERRIDE |
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1322 { |
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1323 if (fileSizeDelta != 0) |
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1324 { |
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1325 throw OrthancException(ErrorCode_InternalError); |
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1326 } |
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1327 } |
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1328 }; |
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1329 |
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1330 |
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1331 SQLiteDatabaseWrapper::SQLiteDatabaseWrapper(const std::string& path) : |
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1332 activeTransaction_(NULL), |
1847 | 1333 signalRemainingAncestor_(NULL), |
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1334 version_(0), |
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1335 dbCapabilities_(true, /* hasFlushToDisk */ |
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1336 false, /* hasRevisionsSupport TODO: implement revisions in SQLite */ |
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1337 true, /* hasLabelsSupport */ |
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1338 false, /* hasAtomicIncrementGlobalProperty */ |
5493
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1339 false, /* hasUpdateAndGetStatistics */ |
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1340 false /* hasMeasureLatency */) |
183 | 1341 { |
1342 db_.Open(path); | |
1343 } | |
1344 | |
2773
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1345 |
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1346 SQLiteDatabaseWrapper::SQLiteDatabaseWrapper() : |
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1347 activeTransaction_(NULL), |
1847 | 1348 signalRemainingAncestor_(NULL), |
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1349 version_(0), |
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1350 dbCapabilities_(true, /* hasFlushToDisk */ |
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1351 false, /* hasRevisionsSupport TODO: implement revisions in SQLite */ |
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1352 true, /* hasLabelsSupport */ |
dceed5e3d6a9
new DB plugin primitive: UpdateAndGetStatistics
Alain Mazy <am@osimis.io>
parents:
5455
diff
changeset
|
1353 false, /* hasAtomicIncrementGlobalProperty */ |
5493
b3ebe249ed5b
At startup, when using a database plugin, display the latency to access the DB
Alain Mazy <am@osimis.io>
parents:
5466
diff
changeset
|
1354 false, /* hasUpdateAndGetStatistics */ |
b3ebe249ed5b
At startup, when using a database plugin, display the latency to access the DB
Alain Mazy <am@osimis.io>
parents:
5466
diff
changeset
|
1355 false /* hasMeasureLatency */) |
183 | 1356 { |
1357 db_.OpenInMemory(); | |
1358 } | |
1359 | |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1360 SQLiteDatabaseWrapper::~SQLiteDatabaseWrapper() |
3116 | 1361 { |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1362 if (activeTransaction_ != NULL) |
3116 | 1363 { |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1364 LOG(ERROR) << "A SQLite transaction is still active in the SQLiteDatabaseWrapper destructor: Expect a crash"; |
3116 | 1365 } |
1366 } | |
1367 | |
1368 | |
3017
517fc4767ae0
renamed class DatabaseWrapper as SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2955
diff
changeset
|
1369 void SQLiteDatabaseWrapper::Open() |
183 | 1370 { |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1371 { |
4594
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1372 boost::mutex::scoped_lock lock(mutex_); |
1717
3926e6317a43
SetIdentifierTagInternal
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1712
diff
changeset
|
1373 |
4594
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1374 if (signalRemainingAncestor_ != NULL) |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1375 { |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1376 throw OrthancException(ErrorCode_BadSequenceOfCalls); // Cannot open twice |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1377 } |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1378 |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1379 signalRemainingAncestor_ = dynamic_cast<SignalRemainingAncestor*>(db_.Register(new SignalRemainingAncestor)); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1380 db_.Register(new SignalFileDeleted(*this)); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1381 db_.Register(new SignalResourceDeleted(*this)); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1382 |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1383 db_.Execute("PRAGMA ENCODING=\"UTF-8\";"); |
374 | 1384 |
4594
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1385 // Performance tuning of SQLite with PRAGMAs |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1386 // http://www.sqlite.org/pragma.html |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1387 db_.Execute("PRAGMA SYNCHRONOUS=NORMAL;"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1388 db_.Execute("PRAGMA JOURNAL_MODE=WAL;"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1389 db_.Execute("PRAGMA LOCKING_MODE=EXCLUSIVE;"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1390 db_.Execute("PRAGMA WAL_AUTOCHECKPOINT=1000;"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1391 //db_.Execute("PRAGMA TEMP_STORE=memory"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1392 |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1393 // Make "LIKE" case-sensitive in SQLite |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1394 db_.Execute("PRAGMA case_sensitive_like = true;"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1395 } |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1396 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1397 VoidDatabaseListener listener; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1398 |
183 | 1399 { |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1400 std::unique_ptr<ITransaction> transaction(StartTransaction(TransactionType_ReadOnly, listener)); |
1239 | 1401 |
3116 | 1402 if (!db_.DoesTableExist("GlobalProperties")) |
3018
e3b5c07146a3
speeding up the computation of the size of the attachments in SQLite
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3017
diff
changeset
|
1403 { |
3116 | 1404 LOG(INFO) << "Creating the database"; |
3018
e3b5c07146a3
speeding up the computation of the size of the attachments in SQLite
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3017
diff
changeset
|
1405 std::string query; |
4031
e3b3af80732d
ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1406 ServerResources::GetFileResource(query, ServerResources::PREPARE_DATABASE); |
3018
e3b5c07146a3
speeding up the computation of the size of the attachments in SQLite
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3017
diff
changeset
|
1407 db_.Execute(query); |
e3b5c07146a3
speeding up the computation of the size of the attachments in SQLite
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3017
diff
changeset
|
1408 } |
3116 | 1409 |
1410 // Check the version of the database | |
1411 std::string tmp; | |
4607
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
1412 if (!transaction->LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion, true /* unused in SQLite */)) |
3116 | 1413 { |
1414 tmp = "Unknown"; | |
1415 } | |
1416 | |
1417 bool ok = false; | |
1418 try | |
1419 { | |
1420 LOG(INFO) << "Version of the Orthanc database: " << tmp; | |
1421 version_ = boost::lexical_cast<unsigned int>(tmp); | |
1422 ok = true; | |
1423 } | |
1424 catch (boost::bad_lexical_cast&) | |
1425 { | |
1426 } | |
1427 | |
1428 if (!ok) | |
1429 { | |
1430 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion, | |
1431 "Incompatible version of the Orthanc database: " + tmp); | |
1432 } | |
1433 | |
1434 if (version_ == 6) | |
1435 { | |
5221
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1436 // New in Orthanc 1.5.1 |
4607
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
1437 if (!transaction->LookupGlobalProperty(tmp, GlobalProperty_GetTotalSizeIsFast, true /* unused in SQLite */) || |
3116 | 1438 tmp != "1") |
1439 { | |
1440 LOG(INFO) << "Installing the SQLite triggers to track the size of the attachments"; | |
1441 std::string query; | |
4031
e3b3af80732d
ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1442 ServerResources::GetFileResource(query, ServerResources::INSTALL_TRACK_ATTACHMENTS_SIZE); |
3116 | 1443 db_.Execute(query); |
1444 } | |
5221
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1445 |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1446 // New in Orthanc 1.12.0 |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1447 if (!db_.DoesTableExist("Labels")) |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1448 { |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1449 LOG(INFO) << "Installing the \"Labels\" table"; |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1450 std::string query; |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1451 ServerResources::GetFileResource(query, ServerResources::INSTALL_LABELS_TABLE); |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1452 db_.Execute(query); |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1453 } |
3116 | 1454 } |
1455 | |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1456 transaction->Commit(0); |
3018
e3b5c07146a3
speeding up the computation of the size of the attachments in SQLite
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3017
diff
changeset
|
1457 } |
1247 | 1458 } |
1459 | |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1460 |
4594
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1461 void SQLiteDatabaseWrapper::Close() |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1462 { |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1463 boost::mutex::scoped_lock lock(mutex_); |
5057
e6f26be401fa
SQLite: close and delete WAL and SHM files on exit (contribution from Sebastian Höffner)
Alain Mazy <am@osimis.io>
parents:
4892
diff
changeset
|
1464 // close and delete the WAL when exiting properly -> the DB is stored in a single file (no more -wal and -shm files) |
e6f26be401fa
SQLite: close and delete WAL and SHM files on exit (contribution from Sebastian Höffner)
Alain Mazy <am@osimis.io>
parents:
4892
diff
changeset
|
1465 db_.Execute("PRAGMA JOURNAL_MODE=DELETE;"); |
4594
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1466 db_.Close(); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1467 } |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1468 |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1469 |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1470 static void ExecuteUpgradeScript(SQLite::Connection& db, |
4031
e3b3af80732d
ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1471 ServerResources::FileResourceId script) |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1472 { |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1473 std::string upgrade; |
4031
e3b3af80732d
ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1474 ServerResources::GetFileResource(upgrade, script); |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1475 db.BeginTransaction(); |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1476 db.Execute(upgrade); |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1477 db.CommitTransaction(); |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1478 } |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1479 |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1480 |
3017
517fc4767ae0
renamed class DatabaseWrapper as SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2955
diff
changeset
|
1481 void SQLiteDatabaseWrapper::Upgrade(unsigned int targetVersion, |
517fc4767ae0
renamed class DatabaseWrapper as SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2955
diff
changeset
|
1482 IStorageArea& storageArea) |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1483 { |
4594
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1484 boost::mutex::scoped_lock lock(mutex_); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1485 |
1664
0c58f189782d
prepare migration to db v6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
changeset
|
1486 if (targetVersion != 6) |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1487 { |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1488 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1489 } |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1490 |
1664
0c58f189782d
prepare migration to db v6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
changeset
|
1491 // This version of Orthanc is only compatible with versions 3, 4, |
0c58f189782d
prepare migration to db v6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
changeset
|
1492 // 5 and 6 of the DB schema |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1493 if (version_ != 3 && |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1494 version_ != 4 && |
1664
0c58f189782d
prepare migration to db v6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
changeset
|
1495 version_ != 5 && |
0c58f189782d
prepare migration to db v6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
changeset
|
1496 version_ != 6) |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1497 { |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1498 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1499 } |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1500 |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1501 if (version_ == 3) |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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1509
diff
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|
1502 { |
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Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1503 LOG(WARNING) << "Upgrading database version from 3 to 4"; |
4031
e3b3af80732d
ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1504 ExecuteUpgradeScript(db_, ServerResources::UPGRADE_DATABASE_3_TO_4); |
1615
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Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1505 version_ = 4; |
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Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1506 } |
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Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1507 |
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Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1508 if (version_ == 4) |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1509 { |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1510 LOG(WARNING) << "Upgrading database version from 4 to 5"; |
4031
e3b3af80732d
ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1511 ExecuteUpgradeScript(db_, ServerResources::UPGRADE_DATABASE_4_TO_5); |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1512 version_ = 5; |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1513 } |
1664
0c58f189782d
prepare migration to db v6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
changeset
|
1514 |
0c58f189782d
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
changeset
|
1515 if (version_ == 5) |
0c58f189782d
prepare migration to db v6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
changeset
|
1516 { |
0c58f189782d
prepare migration to db v6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
changeset
|
1517 LOG(WARNING) << "Upgrading database version from 5 to 6"; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1665
diff
changeset
|
1518 // No change in the DB schema, the step from version 5 to 6 only |
1710 | 1519 // consists in reconstructing the main DICOM tags information |
1520 // (as more tags got included). | |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1521 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1522 VoidDatabaseListener listener; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1523 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1524 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1525 std::unique_ptr<ITransaction> transaction(StartTransaction(TransactionType_ReadWrite, listener)); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1526 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Patient); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1527 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Study); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1528 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Series); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1529 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Instance); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1530 db_.Execute("UPDATE GlobalProperties SET value=\"6\" WHERE property=" + |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1531 boost::lexical_cast<std::string>(GlobalProperty_DatabaseSchemaVersion) + ";"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1532 transaction->Commit(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1533 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1534 |
1664
0c58f189782d
prepare migration to db v6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
changeset
|
1535 version_ = 6; |
1729 | 1536 } |
1615
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Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1537 } |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1538 |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1539 |
4589
bec74e29f86b
attaching the listener to transactions in IDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4571
diff
changeset
|
1540 IDatabaseWrapper::ITransaction* SQLiteDatabaseWrapper::StartTransaction(TransactionType type, |
bec74e29f86b
attaching the listener to transactions in IDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4571
diff
changeset
|
1541 IDatabaseListener& listener) |
4570
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1542 { |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1543 switch (type) |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1544 { |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1545 case TransactionType_ReadOnly: |
4589
bec74e29f86b
attaching the listener to transactions in IDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4571
diff
changeset
|
1546 return new ReadOnlyTransaction(*this, listener); // This is a no-op transaction in SQLite (thanks to mutex) |
4570
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1547 |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1548 case TransactionType_ReadWrite: |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1549 { |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1550 std::unique_ptr<ReadWriteTransaction> transaction; |
4589
bec74e29f86b
attaching the listener to transactions in IDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4571
diff
changeset
|
1551 transaction.reset(new ReadWriteTransaction(*this, listener)); |
4570
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
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|
1552 transaction->Begin(); |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1553 return transaction.release(); |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1554 } |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1555 |
648defffc8cc
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1556 default: |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1557 throw OrthancException(ErrorCode_InternalError); |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
1558 } |
3019
8336204d95dc
refactoring computation of disk size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3018
diff
changeset
|
1559 } |
8336204d95dc
refactoring computation of disk size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3018
diff
changeset
|
1560 |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1561 |
4594
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1562 void SQLiteDatabaseWrapper::FlushToDisk() |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1563 { |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1564 boost::mutex::scoped_lock lock(mutex_); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1565 db_.FlushToDisk(); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1566 } |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1567 |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1568 |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1569 int64_t SQLiteDatabaseWrapper::UnitTestsTransaction::CreateResource(const std::string& publicId, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1570 ResourceType type) |
2773
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1571 { |
5090
cc1a8b3ff319
Made the default SQLite DB more robust wrt future updates like adding new columns in DB.
Alain Mazy <am@osimis.io>
parents:
5057
diff
changeset
|
1572 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources (internalId, resourceType, publicId, parentId) VALUES(NULL, ?, ?, NULL)"); |
2773
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1573 s.BindInt(0, type); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1574 s.BindString(1, publicId); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1575 s.Run(); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1576 return db_.GetLastInsertRowId(); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1577 } |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1578 |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1579 |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1580 void SQLiteDatabaseWrapper::UnitTestsTransaction::AttachChild(int64_t parent, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1581 int64_t child) |
2773
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moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1582 { |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1583 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1584 s.BindInt64(0, parent); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1585 s.BindInt64(1, child); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1586 s.Run(); |
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moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1587 } |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1588 |
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moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1589 |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1590 void SQLiteDatabaseWrapper::UnitTestsTransaction::SetIdentifierTag(int64_t id, |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1591 const DicomTag& tag, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1592 const std::string& value) |
2773
bb63068844ae
moving DatabaseWrapperBase into graveyard
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diff
changeset
|
1593 { |
5090
cc1a8b3ff319
Made the default SQLite DB more robust wrt future updates like adding new columns in DB.
Alain Mazy <am@osimis.io>
parents:
5057
diff
changeset
|
1594 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
2773
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1595 s.BindInt64(0, id); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1596 s.BindInt(1, tag.GetGroup()); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1597 s.BindInt(2, tag.GetElement()); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1598 s.BindString(3, value); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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2447
diff
changeset
|
1599 s.Run(); |
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diff
changeset
|
1600 } |
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diff
changeset
|
1601 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1602 |
4591
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1603 void SQLiteDatabaseWrapper::UnitTestsTransaction::SetMainDicomTag(int64_t id, |
ff8170d17d90
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diff
changeset
|
1604 const DicomTag& tag, |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1605 const std::string& value) |
2773
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diff
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|
1606 { |
5090
cc1a8b3ff319
Made the default SQLite DB more robust wrt future updates like adding new columns in DB.
Alain Mazy <am@osimis.io>
parents:
5057
diff
changeset
|
1607 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
2773
bb63068844ae
moving DatabaseWrapperBase into graveyard
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diff
changeset
|
1608 s.BindInt64(0, id); |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1609 s.BindInt(1, tag.GetGroup()); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1610 s.BindInt(2, tag.GetElement()); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1611 s.BindString(3, value); |
2773
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
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|
1612 s.Run(); |
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1613 } |
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1614 |
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1615 |
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1616 int64_t SQLiteDatabaseWrapper::UnitTestsTransaction::GetTableRecordCount(const std::string& table) |
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1617 { |
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1618 /** |
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1619 * "Generally one cannot use SQL parameters/placeholders for |
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1620 * database identifiers (tables, columns, views, schemas, etc.) or |
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1621 * database functions (e.g., CURRENT_DATE), but instead only for |
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1622 * binding literal values." => To avoid any SQL injection, we |
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1623 * check that the "table" parameter has only alphabetic |
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1624 * characters. |
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1625 * https://stackoverflow.com/a/1274764/881731 |
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1626 **/ |
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1627 for (size_t i = 0; i < table.size(); i++) |
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1628 { |
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1629 if (!isalpha(table[i])) |
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1630 { |
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1631 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1632 } |
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1633 } |
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1634 |
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1635 // Don't use "SQLITE_FROM_HERE", otherwise "table" would be cached |
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1636 SQLite::Statement s(db_, "SELECT COUNT(*) FROM " + table); |
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1637 |
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1638 if (s.Step()) |
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1639 { |
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1640 int64_t c = s.ColumnInt(0); |
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1641 assert(!s.Step()); |
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1642 return c; |
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1643 } |
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1644 else |
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1645 { |
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1646 throw OrthancException(ErrorCode_InternalError); |
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1647 } |
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1648 } |
3121 | 1649 |
1650 | |
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1651 bool SQLiteDatabaseWrapper::UnitTestsTransaction::GetParentPublicId(std::string& target, |
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1652 int64_t id) |
3121 | 1653 { |
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1654 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " |
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1655 "WHERE a.internalId = b.parentId AND b.internalId = ?"); |
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1656 s.BindInt64(0, id); |
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1657 |
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1658 if (s.Step()) |
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1659 { |
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1660 target = s.ColumnString(0); |
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1661 return true; |
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1662 } |
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1663 else |
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1664 { |
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1665 return false; |
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1666 } |
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1667 } |
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1668 |
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1669 |
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1670 void SQLiteDatabaseWrapper::UnitTestsTransaction::GetChildren(std::list<std::string>& childrenPublicIds, |
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1671 int64_t id) |
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1672 { |
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1673 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
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1674 s.BindInt64(0, id); |
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1675 |
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1676 childrenPublicIds.clear(); |
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1677 while (s.Step()) |
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1678 { |
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1679 childrenPublicIds.push_back(s.ColumnString(0)); |
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1680 } |
3121 | 1681 } |
183 | 1682 } |