Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi.cpp @ 403:c3e9b74aab7a
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 30 Apr 2013 12:05:21 +0200 |
parents | d2c69150a979 |
children | 47d63c941902 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
399 | 3 * Copyright (C) 2012-2013 Medical Physics Department, CHU of Liege, |
210
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4 * Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
230 | 33 #include "OrthancRestApi.h" |
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34 |
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35 #include "../Core/HttpServer/FilesystemHttpSender.h" |
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36 #include "../Core/Uuid.h" |
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37 #include "../Core/Compression/HierarchicalZipWriter.h" |
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38 #include "DicomProtocol/DicomUserConnection.h" |
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39 #include "FromDcmtkBridge.h" |
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40 #include "OrthancInitialization.h" |
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41 #include "ServerToolbox.h" |
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42 |
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43 #include <dcmtk/dcmdata/dcistrmb.h> |
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44 #include <dcmtk/dcmdata/dcfilefo.h> |
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45 #include <boost/lexical_cast.hpp> |
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46 #include <glog/logging.h> |
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47 |
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48 |
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49 #define RETRIEVE_CONTEXT(call) \ |
230 | 50 OrthancRestApi& contextApi = \ |
51 dynamic_cast<OrthancRestApi&>(call.GetContext()); \ | |
225 | 52 ServerContext& context = contextApi.GetContext() |
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53 |
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54 #define RETRIEVE_MODALITIES(call) \ |
230 | 55 const OrthancRestApi::Modalities& modalities = \ |
56 dynamic_cast<OrthancRestApi&>(call.GetContext()).GetModalities(); | |
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57 |
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58 |
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59 |
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60 namespace Orthanc |
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61 { |
315 | 62 // TODO IMPROVE MULTITHREADING |
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63 // Every call to "ParsedDicomFile" must lock this mutex!!! |
315 | 64 static boost::mutex cacheMutex_; |
65 | |
66 | |
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67 // DICOM SCU ---------------------------------------------------------------- |
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68 |
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69 static void ConnectToModality(DicomUserConnection& connection, |
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70 const std::string& name) |
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71 { |
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72 std::string aet, address; |
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73 int port; |
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74 GetDicomModality(name, aet, address, port); |
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75 connection.SetLocalApplicationEntityTitle(GetGlobalStringParameter("DicomAet", "ORTHANC")); |
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76 connection.SetDistantApplicationEntityTitle(aet); |
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77 connection.SetDistantHost(address); |
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78 connection.SetDistantPort(port); |
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79 connection.Open(); |
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80 } |
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81 |
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82 static bool MergeQueryAndTemplate(DicomMap& result, |
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83 const std::string& postData) |
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84 { |
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85 Json::Value query; |
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86 Json::Reader reader; |
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87 |
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88 if (!reader.parse(postData, query) || |
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89 query.type() != Json::objectValue) |
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90 { |
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91 return false; |
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92 } |
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93 |
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94 Json::Value::Members members = query.getMemberNames(); |
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95 for (size_t i = 0; i < members.size(); i++) |
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96 { |
304 | 97 DicomTag t = FromDcmtkBridge::ParseTag(members[i]); |
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98 result.SetValue(t, query[members[i]].asString()); |
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99 } |
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100 |
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101 return true; |
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102 } |
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103 |
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104 static void DicomFindPatient(RestApi::PostCall& call) |
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105 { |
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106 DicomMap m; |
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107 DicomMap::SetupFindPatientTemplate(m); |
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108 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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109 { |
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110 return; |
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111 } |
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112 |
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113 DicomUserConnection connection; |
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114 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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115 |
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116 DicomFindAnswers answers; |
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117 connection.FindPatient(answers, m); |
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118 |
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119 Json::Value result; |
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120 answers.ToJson(result); |
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121 call.GetOutput().AnswerJson(result); |
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122 } |
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123 |
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124 static void DicomFindStudy(RestApi::PostCall& call) |
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125 { |
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126 DicomMap m; |
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127 DicomMap::SetupFindStudyTemplate(m); |
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128 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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129 { |
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130 return; |
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131 } |
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132 |
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133 if (m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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134 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) |
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135 { |
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136 return; |
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137 } |
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138 |
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139 DicomUserConnection connection; |
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140 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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141 |
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142 DicomFindAnswers answers; |
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143 connection.FindStudy(answers, m); |
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144 |
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145 Json::Value result; |
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146 answers.ToJson(result); |
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147 call.GetOutput().AnswerJson(result); |
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148 } |
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149 |
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150 static void DicomFindSeries(RestApi::PostCall& call) |
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151 { |
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152 DicomMap m; |
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153 DicomMap::SetupFindSeriesTemplate(m); |
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154 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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155 { |
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156 return; |
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157 } |
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158 |
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159 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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160 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) || |
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161 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2) |
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162 { |
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163 return; |
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164 } |
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165 |
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166 DicomUserConnection connection; |
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167 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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168 |
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169 DicomFindAnswers answers; |
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170 connection.FindSeries(answers, m); |
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171 |
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172 Json::Value result; |
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173 answers.ToJson(result); |
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174 call.GetOutput().AnswerJson(result); |
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175 } |
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176 |
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177 static void DicomFind(RestApi::PostCall& call) |
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178 { |
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179 DicomMap m; |
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180 DicomMap::SetupFindPatientTemplate(m); |
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181 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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182 { |
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183 return; |
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184 } |
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185 |
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186 DicomUserConnection connection; |
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187 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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188 |
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189 DicomFindAnswers patients; |
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190 connection.FindPatient(patients, m); |
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191 |
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192 // Loop over the found patients |
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193 Json::Value result = Json::arrayValue; |
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194 for (size_t i = 0; i < patients.GetSize(); i++) |
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195 { |
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196 Json::Value patient(Json::objectValue); |
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197 FromDcmtkBridge::ToJson(patient, patients.GetAnswer(i)); |
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198 |
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199 DicomMap::SetupFindStudyTemplate(m); |
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200 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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201 { |
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202 return; |
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203 } |
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204 m.CopyTagIfExists(patients.GetAnswer(i), DICOM_TAG_PATIENT_ID); |
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205 |
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206 DicomFindAnswers studies; |
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207 connection.FindStudy(studies, m); |
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208 |
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209 patient["Studies"] = Json::arrayValue; |
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210 |
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211 // Loop over the found studies |
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212 for (size_t j = 0; j < studies.GetSize(); j++) |
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213 { |
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214 Json::Value study(Json::objectValue); |
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215 FromDcmtkBridge::ToJson(study, studies.GetAnswer(j)); |
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216 |
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217 DicomMap::SetupFindSeriesTemplate(m); |
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218 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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219 { |
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220 return; |
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221 } |
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222 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_PATIENT_ID); |
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223 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_STUDY_INSTANCE_UID); |
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224 |
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225 DicomFindAnswers series; |
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226 connection.FindSeries(series, m); |
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227 |
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228 // Loop over the found series |
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229 study["Series"] = Json::arrayValue; |
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230 for (size_t k = 0; k < series.GetSize(); k++) |
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231 { |
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232 Json::Value series2(Json::objectValue); |
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233 FromDcmtkBridge::ToJson(series2, series.GetAnswer(k)); |
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234 study["Series"].append(series2); |
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235 } |
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236 |
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237 patient["Studies"].append(study); |
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238 } |
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239 |
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240 result.append(patient); |
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241 } |
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242 |
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243 call.GetOutput().AnswerJson(result); |
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244 } |
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245 |
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246 |
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247 static void DicomStore(RestApi::PostCall& call) |
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248 { |
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249 RETRIEVE_CONTEXT(call); |
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250 |
231 | 251 std::string remote = call.GetUriComponent("id", ""); |
402 | 252 std::string stripped = Toolbox::StripSpaces(call.GetPostBody()); |
253 | |
254 Json::Value request; | |
255 if (Toolbox::IsSHA1(stripped)) | |
256 { | |
257 // This is for compatibility with Orthanc <= 0.5.1. | |
258 request = stripped; | |
259 } | |
260 else if (!call.ParseJsonRequest(request)) | |
261 { | |
262 // Bad JSON request | |
263 return; | |
264 } | |
265 | |
266 std::list<std::string> instances; | |
267 if (request.isString()) | |
268 { | |
403 | 269 LOG(INFO) << "Sending resource " << request.asString() << " to modality " << remote; |
402 | 270 context.GetIndex().LogExportedResource(request.asString(), remote); |
271 context.GetIndex().GetChildInstances(instances, request.asString()); | |
272 } | |
273 else if (request.isArray()) | |
274 { | |
275 for (Json::Value::ArrayIndex i = 0; i < request.size(); i++) | |
276 { | |
277 if (!request[i].isString()) | |
278 { | |
279 return; | |
280 } | |
281 | |
282 std::string stripped = Toolbox::StripSpaces(request[i].asString()); | |
283 if (!Toolbox::IsSHA1(stripped)) | |
284 { | |
285 return; | |
286 } | |
287 | |
403 | 288 LOG(INFO) << "Sending resource " << stripped << " to modality " << remote; |
402 | 289 context.GetIndex().LogExportedResource(stripped, remote); |
290 | |
291 std::list<std::string> tmp; | |
292 context.GetIndex().GetChildInstances(tmp, stripped); | |
293 instances.merge(tmp); | |
294 assert(tmp.size() == 0); | |
295 } | |
296 } | |
297 else | |
298 { | |
299 // Neither a string, nor a list of strings. Bad request. | |
300 return; | |
301 } | |
302 | |
227
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303 DicomUserConnection connection; |
231 | 304 ConnectToModality(connection, remote); |
305 | |
402 | 306 for (std::list<std::string>::const_iterator |
307 it = instances.begin(); it != instances.end(); it++) | |
227
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308 { |
402 | 309 std::string dicom; |
310 context.ReadFile(dicom, *it, FileContentType_Dicom); | |
311 connection.Store(dicom); | |
227
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312 } |
231 | 313 |
402 | 314 call.GetOutput().AnswerBuffer("{}", "application/json"); |
227
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315 } |
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316 |
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317 |
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318 |
210
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319 // System information ------------------------------------------------------- |
211 | 320 |
321 static void ServeRoot(RestApi::GetCall& call) | |
322 { | |
323 call.GetOutput().Redirect("app/explorer.html"); | |
324 } | |
210
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325 |
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326 static void GetSystemInformation(RestApi::GetCall& call) |
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327 { |
238 | 328 Json::Value result = Json::objectValue; |
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329 |
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330 result["Version"] = ORTHANC_VERSION; |
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331 result["Name"] = GetGlobalStringParameter("Name", ""); |
238 | 332 |
333 call.GetOutput().AnswerJson(result); | |
334 } | |
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335 |
238 | 336 static void GetStatistics(RestApi::GetCall& call) |
337 { | |
338 RETRIEVE_CONTEXT(call); | |
339 Json::Value result = Json::objectValue; | |
340 context.GetIndex().ComputeStatistics(result); | |
210
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341 call.GetOutput().AnswerJson(result); |
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342 } |
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343 |
342
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344 static void GenerateUid(RestApi::GetCall& call) |
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345 { |
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346 std::string level = call.GetArgument("level", ""); |
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347 if (level == "patient") |
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348 { |
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349 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient), "text/plain"); |
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350 } |
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351 else if (level == "study") |
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352 { |
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353 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study), "text/plain"); |
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354 } |
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355 else if (level == "series") |
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356 { |
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357 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series), "text/plain"); |
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358 } |
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359 else if (level == "instance") |
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360 { |
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361 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance), "text/plain"); |
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362 } |
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363 } |
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364 |
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365 |
211 | 366 // List all the patients, studies, series or instances ---------------------- |
367 | |
368 template <enum ResourceType resourceType> | |
369 static void ListResources(RestApi::GetCall& call) | |
370 { | |
371 RETRIEVE_CONTEXT(call); | |
372 | |
373 Json::Value result; | |
374 context.GetIndex().GetAllUuids(result, resourceType); | |
375 call.GetOutput().AnswerJson(result); | |
376 } | |
377 | |
212 | 378 template <enum ResourceType resourceType> |
379 static void GetSingleResource(RestApi::GetCall& call) | |
380 { | |
381 RETRIEVE_CONTEXT(call); | |
382 | |
383 Json::Value result; | |
384 if (context.GetIndex().LookupResource(result, call.GetUriComponent("id", ""), resourceType)) | |
385 { | |
386 call.GetOutput().AnswerJson(result); | |
387 } | |
388 } | |
389 | |
390 template <enum ResourceType resourceType> | |
391 static void DeleteSingleResource(RestApi::DeleteCall& call) | |
392 { | |
393 RETRIEVE_CONTEXT(call); | |
394 | |
395 Json::Value result; | |
396 if (context.GetIndex().DeleteResource(result, call.GetUriComponent("id", ""), resourceType)) | |
397 { | |
398 call.GetOutput().AnswerJson(result); | |
399 } | |
400 } | |
401 | |
211 | 402 |
248
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403 // Download of ZIP files ---------------------------------------------------- |
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404 |
250
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405 |
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406 static std::string GetDirectoryNameInArchive(const Json::Value& resource, |
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407 ResourceType resourceType) |
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408 { |
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409 switch (resourceType) |
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410 { |
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411 case ResourceType_Patient: |
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412 { |
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413 std::string p = resource["MainDicomTags"]["PatientID"].asString(); |
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414 std::string n = resource["MainDicomTags"]["PatientName"].asString(); |
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415 return p + " " + n; |
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416 } |
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417 |
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418 case ResourceType_Study: |
253 | 419 { |
250
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420 return resource["MainDicomTags"]["StudyDescription"].asString(); |
253 | 421 } |
250
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422 |
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423 case ResourceType_Series: |
253 | 424 { |
425 std::string d = resource["MainDicomTags"]["SeriesDescription"].asString(); | |
426 std::string m = resource["MainDicomTags"]["Modality"].asString(); | |
427 return m + " " + d; | |
428 } | |
250
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429 |
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430 default: |
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431 throw OrthancException(ErrorCode_InternalError); |
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432 } |
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433 } |
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434 |
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435 static bool CreateRootDirectoryInArchive(HierarchicalZipWriter& writer, |
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436 ServerContext& context, |
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437 const Json::Value& resource, |
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438 ResourceType resourceType) |
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439 { |
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440 if (resourceType == ResourceType_Patient) |
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441 { |
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442 return true; |
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443 } |
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444 |
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445 ResourceType parentType = GetParentResourceType(resourceType); |
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446 Json::Value parent; |
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447 |
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448 switch (resourceType) |
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449 { |
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450 case ResourceType_Study: |
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451 { |
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452 if (!context.GetIndex().LookupResource(parent, resource["ParentPatient"].asString(), parentType)) |
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453 { |
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454 return false; |
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455 } |
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456 |
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457 break; |
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458 } |
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459 |
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460 case ResourceType_Series: |
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461 if (!context.GetIndex().LookupResource(parent, resource["ParentStudy"].asString(), parentType) || |
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462 !CreateRootDirectoryInArchive(writer, context, parent, parentType)) |
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463 { |
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464 return false; |
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465 } |
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466 break; |
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467 |
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468 default: |
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469 throw OrthancException(ErrorCode_NotImplemented); |
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470 } |
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471 |
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472 writer.OpenDirectory(GetDirectoryNameInArchive(parent, parentType).c_str()); |
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473 return true; |
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474 } |
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475 |
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476 static bool ArchiveInstance(HierarchicalZipWriter& writer, |
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477 ServerContext& context, |
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478 const std::string& instancePublicId) |
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479 { |
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480 Json::Value instance; |
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481 if (!context.GetIndex().LookupResource(instance, instancePublicId, ResourceType_Instance)) |
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482 { |
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483 return false; |
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484 } |
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485 |
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486 std::string filename = instance["MainDicomTags"]["SOPInstanceUID"].asString() + ".dcm"; |
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487 writer.OpenFile(filename.c_str()); |
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488 |
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489 std::string dicom; |
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490 context.ReadFile(dicom, instancePublicId, FileContentType_Dicom); |
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491 writer.Write(dicom); |
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492 |
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493 return true; |
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494 } |
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495 |
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496 static bool ArchiveInternal(HierarchicalZipWriter& writer, |
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497 ServerContext& context, |
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498 const std::string& publicId, |
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499 ResourceType resourceType, |
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500 bool isFirstLevel) |
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501 { |
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502 Json::Value resource; |
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503 if (!context.GetIndex().LookupResource(resource, publicId, resourceType)) |
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504 { |
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505 return false; |
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506 } |
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507 |
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508 if (isFirstLevel && |
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509 !CreateRootDirectoryInArchive(writer, context, resource, resourceType)) |
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510 { |
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511 return false; |
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512 } |
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513 |
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514 writer.OpenDirectory(GetDirectoryNameInArchive(resource, resourceType).c_str()); |
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515 |
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516 switch (resourceType) |
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517 { |
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518 case ResourceType_Patient: |
299 | 519 for (Json::Value::ArrayIndex i = 0; i < resource["Studies"].size(); i++) |
250
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520 { |
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521 std::string studyId = resource["Studies"][i].asString(); |
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522 if (!ArchiveInternal(writer, context, studyId, ResourceType_Study, false)) |
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523 { |
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524 return false; |
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525 } |
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526 } |
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527 break; |
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528 |
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529 case ResourceType_Study: |
299 | 530 for (Json::Value::ArrayIndex i = 0; i < resource["Series"].size(); i++) |
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531 { |
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532 std::string seriesId = resource["Series"][i].asString(); |
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533 if (!ArchiveInternal(writer, context, seriesId, ResourceType_Series, false)) |
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534 { |
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535 return false; |
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536 } |
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537 } |
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538 break; |
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539 |
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540 case ResourceType_Series: |
299 | 541 for (Json::Value::ArrayIndex i = 0; i < resource["Instances"].size(); i++) |
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542 { |
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543 if (!ArchiveInstance(writer, context, resource["Instances"][i].asString())) |
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544 { |
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545 return false; |
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546 } |
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547 } |
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548 break; |
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549 |
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550 default: |
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551 throw OrthancException(ErrorCode_InternalError); |
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552 } |
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553 |
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554 writer.CloseDirectory(); |
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555 return true; |
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556 } |
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557 |
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558 template <enum ResourceType resourceType> |
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559 static void GetArchive(RestApi::GetCall& call) |
248
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560 { |
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561 RETRIEVE_CONTEXT(call); |
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562 |
250
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563 // Create a RAII for the temporary file to manage the ZIP file |
248
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564 Toolbox::TemporaryFile tmp; |
250
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565 std::string id = call.GetUriComponent("id", ""); |
248
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566 |
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|
567 { |
250
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568 // Create a ZIP writer |
248
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569 HierarchicalZipWriter writer(tmp.GetPath().c_str()); |
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570 |
250
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571 // Store the requested resource into the ZIP |
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572 if (!ArchiveInternal(writer, context, id, resourceType, true)) |
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573 { |
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574 return; |
248
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575 } |
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576 } |
250
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577 |
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578 // Prepare the sending of the ZIP file |
248
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579 FilesystemHttpSender sender(tmp.GetPath().c_str()); |
250
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580 sender.SetContentType("application/zip"); |
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581 sender.SetDownloadFilename(id + ".zip"); |
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582 |
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583 // Send the ZIP |
248
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584 call.GetOutput().AnswerFile(sender); |
250
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585 |
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586 // The temporary file is automatically removed thanks to the RAII |
248
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587 } |
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588 |
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589 |
210
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|
590 // Changes API -------------------------------------------------------------- |
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591 |
231 | 592 static void GetSinceAndLimit(int64_t& since, |
593 unsigned int& limit, | |
237
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594 bool& last, |
231 | 595 const RestApi::GetCall& call) |
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596 { |
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597 static const unsigned int MAX_RESULTS = 100; |
237
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598 |
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599 if (call.HasArgument("last")) |
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600 { |
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601 last = true; |
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602 return; |
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603 } |
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604 |
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605 last = false; |
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606 |
210
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607 try |
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608 { |
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609 since = boost::lexical_cast<int64_t>(call.GetArgument("since", "0")); |
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610 limit = boost::lexical_cast<unsigned int>(call.GetArgument("limit", "0")); |
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611 } |
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612 catch (boost::bad_lexical_cast) |
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613 { |
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614 return; |
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615 } |
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616 |
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617 if (limit == 0 || limit > MAX_RESULTS) |
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618 { |
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619 limit = MAX_RESULTS; |
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620 } |
231 | 621 } |
622 | |
623 static void GetChanges(RestApi::GetCall& call) | |
624 { | |
625 RETRIEVE_CONTEXT(call); | |
626 | |
627 //std::string filter = GetArgument(getArguments, "filter", ""); | |
628 int64_t since; | |
629 unsigned int limit; | |
237
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630 bool last; |
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631 GetSinceAndLimit(since, limit, last, call); |
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632 |
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633 Json::Value result; |
237
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634 if ((!last && context.GetIndex().GetChanges(result, since, limit)) || |
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635 ( last && context.GetIndex().GetLastChange(result))) |
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636 { |
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637 call.GetOutput().AnswerJson(result); |
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638 } |
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639 } |
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640 |
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641 |
231 | 642 static void GetExports(RestApi::GetCall& call) |
643 { | |
644 RETRIEVE_CONTEXT(call); | |
645 | |
646 int64_t since; | |
647 unsigned int limit; | |
237
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648 bool last; |
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649 GetSinceAndLimit(since, limit, last, call); |
231 | 650 |
651 Json::Value result; | |
237
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652 if ((!last && context.GetIndex().GetExportedResources(result, since, limit)) || |
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653 ( last && context.GetIndex().GetLastExportedResource(result))) |
231 | 654 { |
655 call.GetOutput().AnswerJson(result); | |
656 } | |
657 } | |
658 | |
210
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659 |
272
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660 // Get information about a single patient ----------------------------------- |
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661 |
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662 static void IsProtectedPatient(RestApi::GetCall& call) |
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663 { |
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664 RETRIEVE_CONTEXT(call); |
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665 std::string publicId = call.GetUriComponent("id", ""); |
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666 bool isProtected = context.GetIndex().IsProtectedPatient(publicId); |
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667 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", "text/plain"); |
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668 } |
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669 |
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670 |
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671 static void SetPatientProtection(RestApi::PutCall& call) |
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672 { |
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673 RETRIEVE_CONTEXT(call); |
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674 std::string publicId = call.GetUriComponent("id", ""); |
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675 std::string s = Toolbox::StripSpaces(call.GetPutBody()); |
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676 |
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677 if (s == "0") |
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678 { |
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679 context.GetIndex().SetProtectedPatient(publicId, false); |
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680 call.GetOutput().AnswerBuffer("", "text/plain"); |
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681 } |
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682 else if (s == "1") |
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683 { |
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684 context.GetIndex().SetProtectedPatient(publicId, true); |
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685 call.GetOutput().AnswerBuffer("", "text/plain"); |
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686 } |
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687 else |
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688 { |
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689 // Bad request |
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690 } |
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691 } |
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692 |
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693 |
213
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694 // Get information about a single instance ---------------------------------- |
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695 |
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696 static void GetInstanceFile(RestApi::GetCall& call) |
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697 { |
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698 RETRIEVE_CONTEXT(call); |
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699 |
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700 std::string publicId = call.GetUriComponent("id", ""); |
233 | 701 context.AnswerFile(call.GetOutput(), publicId, FileContentType_Dicom); |
213
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702 } |
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703 |
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704 |
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705 template <bool simplify> |
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706 static void GetInstanceTags(RestApi::GetCall& call) |
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707 { |
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708 RETRIEVE_CONTEXT(call); |
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709 |
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710 std::string publicId = call.GetUriComponent("id", ""); |
226
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711 |
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712 Json::Value full; |
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713 context.ReadJson(full, publicId); |
213
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714 |
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715 if (simplify) |
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716 { |
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717 Json::Value simplified; |
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718 SimplifyTags(simplified, full); |
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719 call.GetOutput().AnswerJson(simplified); |
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720 } |
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721 else |
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722 { |
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723 call.GetOutput().AnswerJson(full); |
213
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724 } |
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725 } |
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726 |
214 | 727 |
728 static void ListFrames(RestApi::GetCall& call) | |
729 { | |
730 RETRIEVE_CONTEXT(call); | |
731 | |
732 Json::Value instance; | |
733 if (context.GetIndex().LookupResource(instance, call.GetUriComponent("id", ""), ResourceType_Instance)) | |
734 { | |
735 unsigned int numberOfFrames = 1; | |
736 | |
737 try | |
738 { | |
739 Json::Value tmp = instance["MainDicomTags"]["NumberOfFrames"]; | |
740 numberOfFrames = boost::lexical_cast<unsigned int>(tmp.asString()); | |
741 } | |
742 catch (...) | |
743 { | |
744 } | |
745 | |
746 Json::Value result = Json::arrayValue; | |
747 for (unsigned int i = 0; i < numberOfFrames; i++) | |
748 { | |
749 result.append(i); | |
750 } | |
751 | |
752 call.GetOutput().AnswerJson(result); | |
753 } | |
754 } | |
755 | |
213
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756 |
215
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757 template <enum ImageExtractionMode mode> |
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758 static void GetImage(RestApi::GetCall& call) |
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759 { |
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760 RETRIEVE_CONTEXT(call); |
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761 |
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762 std::string frameId = call.GetUriComponent("frame", "0"); |
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763 |
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764 unsigned int frame; |
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765 try |
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766 { |
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767 frame = boost::lexical_cast<unsigned int>(frameId); |
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768 } |
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769 catch (boost::bad_lexical_cast) |
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770 { |
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771 return; |
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772 } |
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773 |
227
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774 std::string publicId = call.GetUriComponent("id", ""); |
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775 std::string dicomContent, png; |
233 | 776 context.ReadFile(dicomContent, publicId, FileContentType_Dicom); |
215
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777 |
227
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778 try |
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779 { |
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780 FromDcmtkBridge::ExtractPngImage(png, dicomContent, frame, mode); |
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781 call.GetOutput().AnswerBuffer(png, "image/png"); |
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782 } |
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783 catch (OrthancException& e) |
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784 { |
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785 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange) |
215
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786 { |
227
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787 // The frame number is out of the range for this DICOM |
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788 // instance, the resource is not existent |
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789 } |
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790 else |
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791 { |
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792 std::string root = ""; |
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793 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
215
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794 { |
227
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795 root += "../"; |
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796 } |
218 | 797 |
227
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798 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
215
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799 } |
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800 } |
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801 } |
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802 |
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803 |
216
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804 // Upload of DICOM files through HTTP --------------------------------------- |
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805 |
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806 static void UploadDicomFile(RestApi::PostCall& call) |
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807 { |
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808 RETRIEVE_CONTEXT(call); |
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809 |
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810 const std::string& postData = call.GetPostBody(); |
291
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811 if (postData.size() == 0) |
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812 { |
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813 return; |
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814 } |
216
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815 |
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816 LOG(INFO) << "Receiving a DICOM file of " << postData.size() << " bytes through HTTP"; |
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817 |
304 | 818 std::string publicId; |
819 StoreStatus status = context.Store(publicId, postData); | |
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820 Json::Value result = Json::objectValue; |
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821 |
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822 if (status != StoreStatus_Failure) |
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823 { |
304 | 824 result["ID"] = publicId; |
825 result["Path"] = GetBasePath(ResourceType_Instance, publicId); | |
216
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826 } |
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827 |
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828 result["Status"] = ToString(status); |
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829 call.GetOutput().AnswerJson(result); |
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830 } |
215
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831 |
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832 |
304 | 833 |
210
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834 // DICOM bridge ------------------------------------------------------------- |
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835 |
230 | 836 static bool IsExistingModality(const OrthancRestApi::Modalities& modalities, |
227
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837 const std::string& id) |
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838 { |
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839 return modalities.find(id) != modalities.end(); |
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840 } |
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841 |
210
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842 static void ListModalities(RestApi::GetCall& call) |
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843 { |
227
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844 RETRIEVE_MODALITIES(call); |
210
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845 |
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846 Json::Value result = Json::arrayValue; |
230 | 847 for (OrthancRestApi::Modalities::const_iterator |
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848 it = modalities.begin(); it != modalities.end(); it++) |
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849 { |
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850 result.append(*it); |
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851 } |
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852 |
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853 call.GetOutput().AnswerJson(result); |
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854 } |
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|
855 |
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|
856 |
227
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857 static void ListModalityOperations(RestApi::GetCall& call) |
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858 { |
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859 RETRIEVE_MODALITIES(call); |
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860 |
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861 std::string id = call.GetUriComponent("id", ""); |
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862 if (IsExistingModality(modalities, id)) |
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863 { |
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864 Json::Value result = Json::arrayValue; |
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865 result.append("find-patient"); |
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866 result.append("find-study"); |
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867 result.append("find-series"); |
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868 result.append("find"); |
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869 result.append("store"); |
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870 call.GetOutput().AnswerJson(result); |
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871 } |
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872 } |
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|
873 |
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874 |
213
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875 |
285
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876 // Raw access to the DICOM tags of an instance ------------------------------ |
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877 |
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878 static void GetRawContent(RestApi::GetCall& call) |
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879 { |
315 | 880 boost::mutex::scoped_lock lock(cacheMutex_); |
285
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881 |
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882 RETRIEVE_CONTEXT(call); |
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883 std::string id = call.GetUriComponent("id", ""); |
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884 ParsedDicomFile& dicom = context.GetDicomFile(id); |
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885 dicom.SendPathValue(call.GetOutput(), call.GetTrailingUri()); |
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886 } |
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887 |
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888 |
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889 |
304 | 890 // Modification of DICOM instances ------------------------------------------ |
891 | |
311 | 892 namespace |
893 { | |
894 typedef std::set<DicomTag> Removals; | |
895 typedef std::map<DicomTag, std::string> Replacements; | |
350
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896 typedef std::map< std::pair<DicomRootLevel, std::string>, std::string> UidMap; |
311 | 897 } |
310 | 898 |
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899 static void ReplaceInstanceInternal(ParsedDicomFile& toModify, |
310 | 900 const Removals& removals, |
901 const Replacements& replacements, | |
312 | 902 DicomReplaceMode mode, |
903 bool removePrivateTags) | |
304 | 904 { |
312 | 905 if (removePrivateTags) |
906 { | |
907 toModify.RemovePrivateTags(); | |
908 } | |
909 | |
310 | 910 for (Removals::const_iterator it = removals.begin(); |
911 it != removals.end(); it++) | |
912 { | |
913 toModify.Remove(*it); | |
914 } | |
915 | |
916 for (Replacements::const_iterator it = replacements.begin(); | |
917 it != replacements.end(); it++) | |
918 { | |
919 toModify.Replace(it->first, it->second, mode); | |
920 } | |
921 | |
922 // A new SOP instance UID is automatically generated | |
923 std::string instanceUid = FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance); | |
924 toModify.Replace(DICOM_TAG_SOP_INSTANCE_UID, instanceUid, DicomReplaceMode_InsertIfAbsent); | |
925 } | |
926 | |
927 | |
928 static void ParseRemovals(Removals& target, | |
929 const Json::Value& removals) | |
930 { | |
931 if (!removals.isArray()) | |
304 | 932 { |
933 throw OrthancException(ErrorCode_BadRequest); | |
934 } | |
935 | |
310 | 936 target.clear(); |
937 | |
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938 for (Json::Value::ArrayIndex i = 0; i < removals.size(); i++) |
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939 { |
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940 std::string name = removals[i].asString(); |
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941 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
310 | 942 target.insert(tag); |
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943 |
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944 VLOG(1) << "Removal: " << name << " " << tag << std::endl; |
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945 } |
310 | 946 } |
947 | |
948 | |
949 static void ParseReplacements(Replacements& target, | |
950 const Json::Value& replacements) | |
951 { | |
952 if (!replacements.isObject()) | |
953 { | |
954 throw OrthancException(ErrorCode_BadRequest); | |
955 } | |
956 | |
957 target.clear(); | |
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958 |
304 | 959 Json::Value::Members members = replacements.getMemberNames(); |
960 for (size_t i = 0; i < members.size(); i++) | |
961 { | |
962 const std::string& name = members[i]; | |
963 std::string value = replacements[name].asString(); | |
964 | |
965 DicomTag tag = FromDcmtkBridge::ParseTag(name); | |
310 | 966 target[tag] = value; |
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967 |
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968 VLOG(1) << "Replacement: " << name << " " << tag << " == " << value << std::endl; |
304 | 969 } |
970 } | |
971 | |
310 | 972 |
311 | 973 static std::string GeneratePatientName(ServerContext& context) |
974 { | |
975 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); | |
976 return "Anonymized" + boost::lexical_cast<std::string>(seq); | |
977 } | |
978 | |
979 | |
310 | 980 static void SetupAnonymization(Removals& removals, |
981 Replacements& replacements) | |
982 { | |
311 | 983 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles |
310 | 984 removals.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID |
311 | 985 //removals.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set by ReplaceInstanceInternal() |
986 removals.insert(DicomTag(0x0008, 0x0050)); // Accession Number | |
987 removals.insert(DicomTag(0x0008, 0x0080)); // Institution Name | |
988 removals.insert(DicomTag(0x0008, 0x0081)); // Institution Address | |
989 removals.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name | |
990 removals.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address | |
991 removals.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers | |
992 removals.insert(DicomTag(0x0008, 0x1010)); // Station Name | |
993 removals.insert(DicomTag(0x0008, 0x1030)); // Study Description | |
994 removals.insert(DicomTag(0x0008, 0x103e)); // Series Description | |
995 removals.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name | |
996 removals.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record | |
997 removals.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name | |
998 removals.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study | |
999 removals.insert(DicomTag(0x0008, 0x1070)); // Operators' Name | |
1000 removals.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description | |
1001 removals.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID | |
1002 removals.insert(DicomTag(0x0008, 0x2111)); // Derivation Description | |
1003 removals.insert(DicomTag(0x0010, 0x0010)); // Patient's Name | |
1004 removals.insert(DicomTag(0x0010, 0x0020)); // Patient ID | |
1005 removals.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date | |
1006 removals.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time | |
1007 removals.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex | |
1008 removals.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids | |
1009 removals.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names | |
1010 removals.insert(DicomTag(0x0010, 0x1010)); // Patient's Age | |
1011 removals.insert(DicomTag(0x0010, 0x1020)); // Patient's Size | |
1012 removals.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight | |
1013 removals.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator | |
1014 removals.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group | |
1015 removals.insert(DicomTag(0x0010, 0x2180)); // Occupation | |
1016 removals.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History | |
1017 removals.insert(DicomTag(0x0010, 0x4000)); // Patient Comments | |
1018 removals.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number | |
1019 removals.insert(DicomTag(0x0018, 0x1030)); // Protocol Name | |
1020 //removals.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => generated below | |
1021 //removals.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => generated below | |
1022 removals.insert(DicomTag(0x0020, 0x0010)); // Study ID | |
1023 removals.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID | |
1024 removals.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID | |
1025 removals.insert(DicomTag(0x0020, 0x4000)); // Image Comments | |
1026 removals.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence | |
1027 removals.insert(DicomTag(0x0040, 0xa124)); // UID | |
1028 removals.insert(DicomTag(0x0040, 0xa730)); // Content Sequence | |
1029 removals.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID | |
1030 removals.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID | |
1031 removals.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID | |
1032 | |
1033 // Some more removals (from the experience of DICOM files at the CHU of Liege) | |
1034 removals.insert(DicomTag(0x0010, 0x1040)); // Patient's Address | |
1035 removals.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician | |
1036 | |
1037 // Set the DeidentificationMethod tag | |
1038 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0063), "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1")); | |
1039 | |
1040 // Set the PatientIdentityRemoved | |
1041 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0062), "YES")); | |
1042 | |
321 | 1043 // Generate random study UID if not specified |
1044 if (replacements.find(DICOM_TAG_STUDY_INSTANCE_UID) == replacements.end()) | |
1045 { | |
1046 replacements.insert(std::make_pair(DICOM_TAG_STUDY_INSTANCE_UID, | |
1047 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study))); | |
1048 } | |
1049 | |
1050 // Generate random series UID if not specified | |
1051 if (replacements.find(DICOM_TAG_SERIES_INSTANCE_UID) == replacements.end()) | |
1052 { | |
1053 replacements.insert(std::make_pair(DICOM_TAG_SERIES_INSTANCE_UID, | |
1054 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series))); | |
1055 } | |
310 | 1056 } |
1057 | |
1058 | |
1059 static bool ParseModifyRequest(Removals& removals, | |
1060 Replacements& replacements, | |
312 | 1061 bool& removePrivateTags, |
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1062 const RestApi::PostCall& call) |
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1063 { |
312 | 1064 removePrivateTags = false; |
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1065 Json::Value request; |
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1066 if (call.ParseJsonRequest(request) && |
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1067 request.isObject()) |
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1068 { |
310 | 1069 Json::Value removalsPart = Json::arrayValue; |
1070 Json::Value replacementsPart = Json::objectValue; | |
304 | 1071 |
306
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1072 if (request.isMember("Remove")) |
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1073 { |
310 | 1074 removalsPart = request["Remove"]; |
306
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1075 } |
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1076 |
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1077 if (request.isMember("Replace")) |
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1078 { |
310 | 1079 replacementsPart = request["Replace"]; |
306
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1080 } |
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1081 |
312 | 1082 if (request.isMember("RemovePrivateTags")) |
1083 { | |
1084 removePrivateTags = true; | |
1085 } | |
1086 | |
310 | 1087 ParseRemovals(removals, removalsPart); |
1088 ParseReplacements(replacements, replacementsPart); | |
1089 | |
306
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1090 return true; |
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1091 } |
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1092 else |
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1093 { |
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1094 return false; |
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1095 } |
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1096 } |
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1097 |
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1098 |
311 | 1099 static bool ParseAnonymizationRequest(Removals& removals, |
1100 Replacements& replacements, | |
1101 bool& removePrivateTags, | |
316
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1102 RestApi::PostCall& call) |
311 | 1103 { |
316
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1104 RETRIEVE_CONTEXT(call); |
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1105 |
311 | 1106 removePrivateTags = true; |
1107 | |
1108 Json::Value request; | |
1109 if (call.ParseJsonRequest(request) && | |
1110 request.isObject()) | |
1111 { | |
1112 Json::Value keepPart = Json::arrayValue; | |
312 | 1113 Json::Value removalsPart = Json::arrayValue; |
1114 Json::Value replacementsPart = Json::objectValue; | |
1115 | |
311 | 1116 if (request.isMember("Keep")) |
1117 { | |
1118 keepPart = request["Keep"]; | |
1119 } | |
1120 | |
1121 if (request.isMember("KeepPrivateTags")) | |
1122 { | |
1123 removePrivateTags = false; | |
1124 } | |
1125 | |
312 | 1126 if (request.isMember("Replace")) |
1127 { | |
1128 replacementsPart = request["Replace"]; | |
1129 } | |
1130 | |
311 | 1131 Removals toKeep; |
1132 ParseRemovals(toKeep, keepPart); | |
1133 | |
1134 SetupAnonymization(removals, replacements); | |
1135 | |
1136 for (Removals::iterator it = toKeep.begin(); it != toKeep.end(); it++) | |
1137 { | |
1138 removals.erase(*it); | |
1139 } | |
1140 | |
312 | 1141 Removals additionalRemovals; |
1142 ParseRemovals(additionalRemovals, removalsPart); | |
1143 | |
1144 for (Removals::iterator it = additionalRemovals.begin(); | |
1145 it != additionalRemovals.end(); it++) | |
1146 { | |
321 | 1147 removals.insert(*it); |
312 | 1148 } |
1149 | |
1150 ParseReplacements(replacements, replacementsPart); | |
1151 | |
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1152 // Generate random Patient's Name if none is specified |
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1153 if (replacements.find(DicomTag(0x0010, 0x0010)) == replacements.end()) |
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1154 { |
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1155 replacements.insert(std::make_pair(DicomTag(0x0010, 0x0010), GeneratePatientName(context))); |
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1156 } |
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1157 |
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1158 // Generate random Patient's ID if none is specified |
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1159 if (replacements.find(DICOM_TAG_PATIENT_ID) == replacements.end()) |
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1160 { |
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1161 replacements.insert(std::make_pair(DICOM_TAG_PATIENT_ID, |
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1162 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient))); |
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1163 } |
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1164 |
311 | 1165 return true; |
1166 } | |
1167 else | |
1168 { | |
1169 return false; | |
1170 } | |
1171 } | |
1172 | |
1173 | |
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1174 static void AnonymizeOrModifyInstance(Removals& removals, |
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1175 Replacements& replacements, |
314 | 1176 bool removePrivateTags, |
1177 RestApi::PostCall& call) | |
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1178 { |
315 | 1179 boost::mutex::scoped_lock lock(cacheMutex_); |
302
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1180 RETRIEVE_CONTEXT(call); |
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1181 |
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1182 std::string id = call.GetUriComponent("id", ""); |
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1183 ParsedDicomFile& dicom = context.GetDicomFile(id); |
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1184 |
314 | 1185 std::auto_ptr<ParsedDicomFile> modified(dicom.Clone()); |
1186 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags); | |
1187 modified->Answer(call.GetOutput()); | |
1188 } | |
1189 | |
1190 | |
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1191 static bool RetrieveMappedUid(ParsedDicomFile& dicom, |
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1192 DicomRootLevel level, |
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1193 Replacements& replacements, |
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1194 UidMap& uidMap) |
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1195 { |
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1196 std::auto_ptr<DicomTag> tag; |
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1197 if (level == DicomRootLevel_Series) |
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1198 { |
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1199 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID)); |
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1200 } |
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1201 else |
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1202 { |
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1203 assert(level == DicomRootLevel_Study); |
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1204 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID)); |
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1205 } |
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1206 |
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1207 std::string original; |
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1208 if (!dicom.GetTagValue(original, *tag)) |
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1209 { |
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1210 throw OrthancException(ErrorCode_InternalError); |
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1211 } |
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1212 |
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1213 std::string mapped; |
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1214 bool isNew; |
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1215 |
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1216 UidMap::const_iterator previous = uidMap.find(std::make_pair(level, original)); |
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1217 if (previous == uidMap.end()) |
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1218 { |
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1219 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level); |
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1220 uidMap.insert(std::make_pair(std::make_pair(level, original), mapped)); |
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1221 isNew = true; |
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1222 } |
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1223 else |
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1224 { |
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1225 mapped = previous->second; |
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1226 isNew = false; |
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1227 } |
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1228 |
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1229 replacements[*tag] = mapped; |
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1230 return isNew; |
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1231 } |
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1232 |
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1233 |
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1234 static void AnonymizeOrModifyResource(Removals& removals, |
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1235 Replacements& replacements, |
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1236 bool removePrivateTags, |
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1237 MetadataType metadataType, |
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1238 ChangeType changeType, |
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1239 ResourceType resourceType, |
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1240 RestApi::PostCall& call) |
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1241 { |
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1242 typedef std::list<std::string> Instances; |
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1243 |
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1244 bool isFirst = true; |
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1245 Json::Value result(Json::objectValue); |
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1246 |
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1247 boost::mutex::scoped_lock lock(cacheMutex_); |
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1248 RETRIEVE_CONTEXT(call); |
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1249 |
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1250 Instances instances; |
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1251 std::string id = call.GetUriComponent("id", ""); |
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1252 context.GetIndex().GetChildInstances(instances, id); |
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1253 |
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1254 if (instances.size() == 0) |
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1255 { |
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1256 return; |
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1257 } |
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1258 |
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1259 |
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1260 /** |
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1261 * Loop over all the instances of the resource. |
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1262 **/ |
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1263 |
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1264 UidMap uidMap; |
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1265 for (Instances::const_iterator it = instances.begin(); |
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1266 it != instances.end(); it++) |
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1267 { |
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1268 LOG(INFO) << "Modifying instance " << *it; |
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1269 ParsedDicomFile& original = context.GetDicomFile(*it); |
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1270 |
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1271 bool isNewSeries = RetrieveMappedUid(original, DicomRootLevel_Series, replacements, uidMap); |
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1272 |
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1273 bool isNewStudy = false; |
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1274 if (resourceType == ResourceType_Study || |
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1275 resourceType == ResourceType_Patient) |
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1276 { |
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1277 isNewStudy = RetrieveMappedUid(original, DicomRootLevel_Study, replacements, uidMap); |
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1278 } |
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1279 |
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1280 /** |
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1281 * Compute the resulting DICOM instance and store it into the Orthanc store. |
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1282 **/ |
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1283 |
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1284 std::auto_ptr<ParsedDicomFile> modified(original.Clone()); |
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1285 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags); |
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1286 |
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1287 std::string modifiedInstance; |
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1288 if (context.Store(modifiedInstance, modified->GetDicom()) != StoreStatus_Success) |
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1289 { |
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1290 LOG(ERROR) << "Error while storing a modified instance " << *it; |
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1291 return; |
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1292 } |
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1293 |
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1294 |
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1295 /** |
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1296 * Record metadata information (AnonimizedFrom/ModifiedFrom). |
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1297 **/ |
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1298 |
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1299 DicomInstanceHasher modifiedHasher = modified->GetHasher(); |
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1300 DicomInstanceHasher originalHasher = original.GetHasher(); |
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1301 |
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1302 if (isNewSeries) |
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1303 { |
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1304 context.GetIndex().SetMetadata(modifiedHasher.HashSeries(), |
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1305 metadataType, originalHasher.HashSeries()); |
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1306 } |
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1307 |
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1308 if (isNewStudy) |
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1309 { |
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1310 context.GetIndex().SetMetadata(modifiedHasher.HashStudy(), |
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1311 metadataType, originalHasher.HashStudy()); |
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1312 } |
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1313 |
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1314 assert(*it == originalHasher.HashInstance()); |
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1315 assert(modifiedInstance == modifiedHasher.HashInstance()); |
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1316 context.GetIndex().SetMetadata(modifiedInstance, metadataType, *it); |
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1317 |
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1318 |
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1319 /** |
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1320 * Compute the JSON object that is returned by the REST call. |
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1321 **/ |
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1322 |
348
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1323 if (isFirst) |
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1324 { |
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1325 std::string newId; |
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1326 |
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1327 switch (resourceType) |
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1328 { |
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1329 case ResourceType_Series: |
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1330 newId = modifiedHasher.HashSeries(); |
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1331 break; |
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1332 |
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1333 case ResourceType_Study: |
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1334 newId = modifiedHasher.HashStudy(); |
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1335 break; |
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1336 |
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1337 case ResourceType_Patient: |
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1338 newId = modifiedHasher.HashPatient(); |
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1339 break; |
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1340 |
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1341 default: |
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1342 throw OrthancException(ErrorCode_InternalError); |
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1343 } |
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1344 |
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1345 result["Type"] = ToString(resourceType); |
349
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1346 result["ID"] = newId; |
348
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1347 result["Path"] = GetBasePath(resourceType, newId); |
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1348 result["PatientID"] = modifiedHasher.HashPatient(); |
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1349 isFirst = false; |
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1350 } |
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1351 } |
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1352 |
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1353 call.GetOutput().AnswerJson(result); |
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1354 } |
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1355 |
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1356 |
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1357 |
314 | 1358 static void ModifyInstance(RestApi::PostCall& call) |
1359 { | |
310 | 1360 Removals removals; |
1361 Replacements replacements; | |
312 | 1362 bool removePrivateTags; |
310 | 1363 |
312 | 1364 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
304 | 1365 { |
314 | 1366 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call); |
304 | 1367 } |
306
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1368 } |
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1369 |
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1370 |
311 | 1371 static void AnonymizeInstance(RestApi::PostCall& call) |
1372 { | |
1373 Removals removals; | |
1374 Replacements replacements; | |
1375 bool removePrivateTags; | |
1376 | |
1377 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call)) | |
1378 { | |
314 | 1379 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call); |
311 | 1380 } |
1381 } | |
1382 | |
1383 | |
308
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1384 static void ModifySeriesInplace(RestApi::PostCall& call) |
306
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1385 { |
310 | 1386 Removals removals; |
1387 Replacements replacements; | |
312 | 1388 bool removePrivateTags; |
308
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1389 |
312 | 1390 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
308
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1391 { |
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1392 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, |
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1393 MetadataType_ModifiedFrom, ChangeType_ModifiedSeries, |
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1394 ResourceType_Series, call); |
316
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1395 } |
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1396 } |
315 | 1397 |
308
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1398 |
316
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1399 static void AnonymizeSeriesInplace(RestApi::PostCall& call) |
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1400 { |
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1401 Removals removals; |
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1402 Replacements replacements; |
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1403 bool removePrivateTags; |
308
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1404 |
316
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1405 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call)) |
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1406 { |
349
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1407 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, |
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1408 MetadataType_AnonymizedFrom, ChangeType_AnonymizedSeries, |
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1409 ResourceType_Series, call); |
308
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1410 } |
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1411 } |
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1412 |
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1413 |
316
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1414 static void ModifyStudyInplace(RestApi::PostCall& call) |
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1415 { |
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1416 Removals removals; |
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1417 Replacements replacements; |
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1418 bool removePrivateTags; |
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1419 |
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1420 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
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1421 { |
349
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1422 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, |
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1423 MetadataType_ModifiedFrom, ChangeType_ModifiedStudy, |
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1424 ResourceType_Study, call); |
316
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1425 } |
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1426 } |
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1427 |
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1428 |
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1429 static void AnonymizeStudyInplace(RestApi::PostCall& call) |
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1430 { |
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1431 Removals removals; |
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1432 Replacements replacements; |
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1433 bool removePrivateTags; |
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1434 |
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1435 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call)) |
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1436 { |
349
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1437 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, |
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1438 MetadataType_AnonymizedFrom, ChangeType_AnonymizedStudy, |
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1439 ResourceType_Study, call); |
316
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1440 } |
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1441 } |
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1442 |
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1443 |
351 | 1444 static void ModifyPatientInplace(RestApi::PostCall& call) |
1445 { | |
1446 Removals removals; | |
1447 Replacements replacements; | |
1448 bool removePrivateTags; | |
1449 | |
1450 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) | |
1451 { | |
1452 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, | |
1453 MetadataType_ModifiedFrom, ChangeType_ModifiedPatient, | |
1454 ResourceType_Patient, call); | |
1455 } | |
1456 } | |
1457 | |
1458 | |
1459 static void AnonymizePatientInplace(RestApi::PostCall& call) | |
1460 { | |
1461 Removals removals; | |
1462 Replacements replacements; | |
1463 bool removePrivateTags; | |
1464 | |
1465 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call)) | |
1466 { | |
1467 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, | |
1468 MetadataType_AnonymizedFrom, ChangeType_AnonymizedPatient, | |
1469 ResourceType_Patient, call); | |
1470 } | |
1471 } | |
1472 | |
1473 | |
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1474 |
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1475 // Registration of the various REST handlers -------------------------------- |
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1476 |
230 | 1477 OrthancRestApi::OrthancRestApi(ServerContext& context) : |
224
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1478 context_(context) |
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1479 { |
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1480 GetListOfDicomModalities(modalities_); |
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1481 |
211 | 1482 Register("/", ServeRoot); |
210
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1483 Register("/system", GetSystemInformation); |
238 | 1484 Register("/statistics", GetStatistics); |
210
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1485 Register("/changes", GetChanges); |
237
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1486 Register("/exports", GetExports); |
211 | 1487 |
216
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1488 Register("/instances", UploadDicomFile); |
211 | 1489 Register("/instances", ListResources<ResourceType_Instance>); |
1490 Register("/patients", ListResources<ResourceType_Patient>); | |
1491 Register("/series", ListResources<ResourceType_Series>); | |
1492 Register("/studies", ListResources<ResourceType_Study>); | |
212 | 1493 |
1494 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); | |
1495 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); | |
1496 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); | |
1497 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); | |
1498 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); | |
1499 Register("/series/{id}", GetSingleResource<ResourceType_Series>); | |
1500 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); | |
1501 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); | |
250
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1502 |
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1503 Register("/patients/{id}/archive", GetArchive<ResourceType_Patient>); |
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1504 Register("/studies/{id}/archive", GetArchive<ResourceType_Study>); |
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1505 Register("/series/{id}/archive", GetArchive<ResourceType_Series>); |
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1506 |
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1507 Register("/patients/{id}/protected", IsProtectedPatient); |
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1508 Register("/patients/{id}/protected", SetPatientProtection); |
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1509 Register("/instances/{id}/file", GetInstanceFile); |
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1510 Register("/instances/{id}/tags", GetInstanceTags<false>); |
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1511 Register("/instances/{id}/simplified-tags", GetInstanceTags<true>); |
214 | 1512 Register("/instances/{id}/frames", ListFrames); |
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1513 Register("/instances/{id}/content/*", GetRawContent); |
213
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1514 |
215
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1515 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
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1516 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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1517 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
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1518 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
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1519 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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1520 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
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1521 |
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1522 Register("/modalities", ListModalities); |
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1523 Register("/modalities/{id}", ListModalityOperations); |
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1524 Register("/modalities/{id}/find-patient", DicomFindPatient); |
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1525 Register("/modalities/{id}/find-study", DicomFindStudy); |
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1526 Register("/modalities/{id}/find-series", DicomFindSeries); |
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1527 Register("/modalities/{id}/find", DicomFind); |
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1528 Register("/modalities/{id}/store", DicomStore); |
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1529 |
304 | 1530 Register("/instances/{id}/modify", ModifyInstance); |
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1531 Register("/series/{id}/modify", ModifySeriesInplace); |
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1532 Register("/studies/{id}/modify", ModifyStudyInplace); |
351 | 1533 Register("/patients/{id}/modify", ModifyPatientInplace); |
311 | 1534 |
1535 Register("/instances/{id}/anonymize", AnonymizeInstance); | |
316
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1536 Register("/series/{id}/anonymize", AnonymizeSeriesInplace); |
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1537 Register("/studies/{id}/anonymize", AnonymizeStudyInplace); |
351 | 1538 Register("/patients/{id}/anonymize", AnonymizePatientInplace); |
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1539 |
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1540 Register("/tools/generate-uid", GenerateUid); |
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1541 } |
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1542 } |