Mercurial > hg > orthanc

annotate OrthancServer/ServerJobs/ResourceModificationJob.cpp @ 2956:bfee0b9f3209

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 03 Dec 2018 15:11:42 +0100
parents bbfd95a0c429
children 4e43e67f8ecf
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "../PrecompiledHeadersServer.h"
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35 #include "ResourceModificationJob.h"
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36
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37 #include "../../Core/Logging.h"
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38 #include "../../Core/SerializationToolbox.h"
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39
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40 namespace Orthanc
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41 {
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42 class ResourceModificationJob::Output : public boost::noncopyable
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43 {
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44 private:
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45 ResourceType level_;
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46 bool isFirst_;
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47 std::string id_;
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48 std::string patientId_;
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49
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50 public:
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51 Output(ResourceType level) :
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52 level_(level),
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53 isFirst_(true)
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54 {
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55 if (level_ != ResourceType_Patient &&
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56 level_ != ResourceType_Study &&
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57 level_ != ResourceType_Series)
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58 {
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59 throw OrthancException(ErrorCode_ParameterOutOfRange);
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60 }
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61 }
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62
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63 ResourceType GetLevel() const
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64 {
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65 return level_;
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66 }
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67
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68
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69 void Update(DicomInstanceHasher& hasher)
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70 {
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71 if (isFirst_)
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72 {
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73 switch (level_)
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74 {
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75 case ResourceType_Series:
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76 id_ = hasher.HashSeries();
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77 break;
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78
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79 case ResourceType_Study:
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80 id_ = hasher.HashStudy();
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81 break;
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82
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83 case ResourceType_Patient:
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84 id_ = hasher.HashPatient();
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85 break;
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86
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87 default:
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88 throw OrthancException(ErrorCode_InternalError);
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89 }
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90
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91 patientId_ = hasher.HashPatient();
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92 isFirst_ = false;
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93 }
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94 }
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95
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96
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97 bool Format(Json::Value& target)
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98 {
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99 if (isFirst_)
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100 {
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101 return false;
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102 }
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103 else
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104 {
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105 target = Json::objectValue;
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106 target["Type"] = EnumerationToString(level_);
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107 target["ID"] = id_;
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108 target["Path"] = GetBasePath(level_, id_);
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109 target["PatientID"] = patientId_;
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110 return true;
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111 }
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112 }
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113
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114
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115 bool GetIdentifier(std::string& id)
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116 {
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117 if (isFirst_)
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118 {
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119 return false;
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120 }
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121 else
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122 {
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123 id = id_;
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124 return true;
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125 }
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126 }
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127 };
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128
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129
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130
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131
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132 bool ResourceModificationJob::HandleInstance(const std::string& instance)
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133 {
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134 if (modification_.get() == NULL ||
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135 output_.get() == NULL)
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136 {
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137 throw OrthancException(ErrorCode_BadSequenceOfCalls,
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138 "No modification was provided for this job");
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139 }
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140
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141
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142 LOG(INFO) << "Modifying instance in a job: " << instance;
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143
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145 /**
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146 * Retrieve the original instance from the DICOM cache.
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147 **/
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148
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149 std::auto_ptr<DicomInstanceHasher> originalHasher;
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150 std::auto_ptr<ParsedDicomFile> modified;
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151
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152 try
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153 {
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154 ServerContext::DicomCacheLocker locker(context_, instance);
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155 ParsedDicomFile& original = locker.GetDicom();
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156
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157 originalHasher.reset(new DicomInstanceHasher(original.GetHasher()));
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158 modified.reset(original.Clone(true));
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159 }
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160 catch (OrthancException&)
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161 {
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162 LOG(WARNING) << "An instance was removed after the job was issued: " << instance;
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163 return false;
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164 }
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165
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166
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167 /**
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168 * Compute the resulting DICOM instance.
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169 **/
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170
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171 modification_->Apply(*modified);
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172
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173 DicomInstanceToStore toStore;
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174 toStore.SetOrigin(origin_);
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175 toStore.SetParsedDicomFile(*modified);
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176
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177
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178 /**
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179 * Prepare the metadata information to associate with the
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180 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom).
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181 **/
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182
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183 DicomInstanceHasher modifiedHasher = modified->GetHasher();
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184
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185 MetadataType metadataType = (isAnonymization_ ?
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186 MetadataType_AnonymizedFrom :
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187 MetadataType_ModifiedFrom);
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188
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189 if (originalHasher->HashSeries() != modifiedHasher.HashSeries())
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190 {
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191 toStore.AddMetadata(ResourceType_Series, metadataType, originalHasher->HashSeries());
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192 }
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193
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194 if (originalHasher->HashStudy() != modifiedHasher.HashStudy())
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195 {
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196 toStore.AddMetadata(ResourceType_Study, metadataType, originalHasher->HashStudy());
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197 }
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198
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199 if (originalHasher->HashPatient() != modifiedHasher.HashPatient())
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200 {
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201 toStore.AddMetadata(ResourceType_Patient, metadataType, originalHasher->HashPatient());
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202 }
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203
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204 assert(instance == originalHasher->HashInstance());
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205 toStore.AddMetadata(ResourceType_Instance, metadataType, instance);
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206
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207
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208 /**
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209 * Store the resulting DICOM instance into the Orthanc store.
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210 **/
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211
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212 std::string modifiedInstance;
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213 if (context_.Store(modifiedInstance, toStore) != StoreStatus_Success)
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214 {
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215 throw OrthancException(ErrorCode_CannotStoreInstance,
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216 "Error while storing a modified instance " + instance);
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217 }
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218
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219 assert(modifiedInstance == modifiedHasher.HashInstance());
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220
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221 output_->Update(modifiedHasher);
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222
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223 return true;
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224 }
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225
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226
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227 bool ResourceModificationJob::HandleTrailingStep()
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228 {
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229 throw OrthancException(ErrorCode_InternalError);
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230 }
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231
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232
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233 void ResourceModificationJob::SetModification(DicomModification* modification,
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234 ResourceType level,
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235 bool isAnonymization)
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236 {
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237 if (modification == NULL)
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238 {
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239 throw OrthancException(ErrorCode_NullPointer);
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240 }
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241 else if (IsStarted())
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242 {
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243 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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244 }
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245 else
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246 {
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247 modification_.reset(modification);
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248 output_.reset(new Output(level));
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249 isAnonymization_ = isAnonymization;
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250 }
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251 }
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252
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253
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254 void ResourceModificationJob::SetOrigin(const DicomInstanceOrigin& origin)
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255 {
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256 if (IsStarted())
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257 {
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258 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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259 }
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260 else
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261 {
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262 origin_ = origin;
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263 }
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264 }
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265
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266
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267 void ResourceModificationJob::SetOrigin(const RestApiCall& call)
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268 {
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269 SetOrigin(DicomInstanceOrigin::FromRest(call));
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270 }
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271
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272
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273 const DicomModification& ResourceModificationJob::GetModification() const
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274 {
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275 if (modification_.get() == NULL)
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276 {
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277 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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278 }
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279 else
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280 {
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281 return *modification_;
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282 }
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283 }
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284
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285
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286 void ResourceModificationJob::GetPublicContent(Json::Value& value)
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287 {
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288 SetOfInstancesJob::GetPublicContent(value);
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289
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290 value["IsAnonymization"] = isAnonymization_;
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291
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292 if (output_.get() != NULL)
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293 {
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294 output_->Format(value);
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295 }
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296 }
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298
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299 static const char* MODIFICATION = "Modification";
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300 static const char* ORIGIN = "Origin";
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301 static const char* IS_ANONYMIZATION = "IsAnonymization";
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302
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303
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304 ResourceModificationJob::ResourceModificationJob(ServerContext& context,
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305 const Json::Value& serialized) :
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306 SetOfInstancesJob(serialized),
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307 context_(context)
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308 {
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309 isAnonymization_ = SerializationToolbox::ReadBoolean(serialized, IS_ANONYMIZATION);
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310 origin_ = DicomInstanceOrigin(serialized[ORIGIN]);
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311 modification_.reset(new DicomModification(serialized[MODIFICATION]));
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312 }
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313
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314 bool ResourceModificationJob::Serialize(Json::Value& value)
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315 {
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316 if (!SetOfInstancesJob::Serialize(value))
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317 {
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318 return false;
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319 }
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320 else
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321 {
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322 value[IS_ANONYMIZATION] = isAnonymization_;
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323 origin_.Serialize(value[ORIGIN]);
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324
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325 Json::Value tmp;
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326 modification_->Serialize(tmp);
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327 value[MODIFICATION] = tmp;
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328
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329 return true;
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330 }
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331 }
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332 }