annotate OrthancServer/FromDcmtkBridge.cpp @ 183:baada606da3c

databasewrapper
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 12 Nov 2012 14:52:30 +0100
parents 81f11fb357f2
children 4031f73fe0e4
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012 Medical Physics Department, CHU of Liege,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Belgium
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 *
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 * This program is free software: you can redistribute it and/or
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * modify it under the terms of the GNU General Public License as
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * published by the Free Software Foundation, either version 3 of the
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * License, or (at your option) any later version.
136
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
10 *
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
11 * In addition, as a special exception, the copyright holders of this
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
12 * program give permission to link the code of its release with the
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
14 * that use the same license as the "OpenSSL" library), and distribute
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
15 * the linked executables. You must obey the GNU General Public License
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
16 * in all respects for all of the code used other than "OpenSSL". If you
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
17 * modify file(s) with this exception, you may extend this exception to
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
18 * your version of the file(s), but you are not obligated to do so. If
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
19 * you do not wish to do so, delete this exception statement from your
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
20 * version. If you delete this exception statement from all source files
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
21 * in the program, then also delete it here.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 *
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 * This program is distributed in the hope that it will be useful, but
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 * WITHOUT ANY WARRANTY; without even the implied warranty of
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 * General Public License for more details.
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 *
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 * You should have received a copy of the GNU General Public License
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 **/
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31
71
aa65ced5f0f0 fix for visual studio
jodogne
parents: 62
diff changeset
32 #ifndef NOMINMAX
aa65ced5f0f0 fix for visual studio
jodogne
parents: 62
diff changeset
33 #define NOMINMAX
aa65ced5f0f0 fix for visual studio
jodogne
parents: 62
diff changeset
34 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 #include "FromDcmtkBridge.h"
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 #include "ToDcmtkBridge.h"
107
3b45473c0a73 replace boost::locale with iconv for debian
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 106
diff changeset
39 #include "../Core/Toolbox.h"
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
40 #include "../Core/OrthancException.h"
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 #include "../Core/PngWriter.h"
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 #include "../Core/DicomFormat/DicomString.h"
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 #include "../Core/DicomFormat/DicomNullValue.h"
79
297bad4e1019 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 73
diff changeset
44 #include "../Core/DicomFormat/DicomIntegerPixelAccessor.h"
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45
71
aa65ced5f0f0 fix for visual studio
jodogne
parents: 62
diff changeset
46 #include <limits>
aa65ced5f0f0 fix for visual studio
jodogne
parents: 62
diff changeset
47
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 #include <boost/lexical_cast.hpp>
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 #include <dcmtk/dcmdata/dcdicent.h>
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 #include <dcmtk/dcmdata/dcdict.h>
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 #include <dcmtk/dcmdata/dcfilefo.h>
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 #include <dcmtk/dcmdata/dcistrmb.h>
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 #include <dcmtk/dcmdata/dcvrfd.h>
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 #include <dcmtk/dcmdata/dcvrfl.h>
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 #include <dcmtk/dcmdata/dcvrsl.h>
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 #include <dcmtk/dcmdata/dcvrss.h>
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 #include <dcmtk/dcmdata/dcvrul.h>
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 #include <dcmtk/dcmdata/dcvrus.h>
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
60 #include <dcmtk/dcmdata/dcuid.h>
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61
2
67a6978503b7 fixing Windows build
Jodogne@Laptop
parents: 0
diff changeset
62 #include <boost/math/special_functions/round.hpp>
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
64 namespace Orthanc
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 void FromDcmtkBridge::Convert(DicomMap& target, DcmDataset& dataset)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 target.Clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 for (unsigned long i = 0; i < dataset.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 DcmElement* element = dataset.getElement(i);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 if (element && element->isLeaf())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 target.SetValue(element->getTag().getGTag(),
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 element->getTag().getETag(),
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 ConvertLeafElement(*element));
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 return DicomTag(element.getGTag(), element.getETag());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 if (!element.isLeaf())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 {
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
92 throw OrthancException("Only applicable to leaf elements");
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 if (element.isaString())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 char *c;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 if (element.getString(c).good() &&
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 c != NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 std::string s(c);
107
3b45473c0a73 replace boost::locale with iconv for debian
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 106
diff changeset
102 std::string utf8 = Toolbox::ConvertToUtf8(s, "ISO-8859-1"); // TODO Parameter?
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 return new DicomString(utf8);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 return new DicomNullValue;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 try
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 // http://support.dcmtk.org/docs/dcvr_8h-source.html
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 switch (element.getVR())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117 /**
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118 * TODO.
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119 **/
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 case EVR_DS: // decimal string
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 case EVR_IS: // integer string
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 case EVR_OB: // other byte
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 case EVR_OF: // other float
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125 case EVR_OW: // other word
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126 case EVR_AS: // age string
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127 case EVR_AT: // attribute tag
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128 case EVR_DA: // date string
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129 case EVR_DT: // date time string
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
130 case EVR_TM: // time string
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131 case EVR_UN: // unknown value representation
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
132 return new DicomNullValue();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
134
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
135 /**
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136 * String types, should never happen at this point because of
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
137 * "element.isaString()".
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138 **/
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140 case EVR_AE: // application entity title
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141 case EVR_CS: // code string
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142 case EVR_SH: // short string
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143 case EVR_LO: // long string
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144 case EVR_ST: // short text
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 case EVR_LT: // long text
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
146 case EVR_UT: // unlimited text
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 case EVR_PN: // person name
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148 case EVR_UI: // unique identifier
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149 return new DicomNullValue();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
150
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
151
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152 /**
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153 * Numerical types
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
154 **/
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
155
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
156 case EVR_SL: // signed long
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
158 Sint32 f;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
159 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
161 return new DicomString(boost::lexical_cast<std::string>(f));
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
162 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
163 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
164 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
165 return new DicomNullValue();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
166 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
167 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
168
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
169 case EVR_SS: // signed short
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
170 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171 Sint16 f;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
173 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
174 return new DicomString(boost::lexical_cast<std::string>(f));
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
176 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
178 return new DicomNullValue();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
179 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
180 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
181
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
182 case EVR_UL: // unsigned long
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
183 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184 Uint32 f;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
185 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
186 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
187 return new DicomString(boost::lexical_cast<std::string>(f));
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
188 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
190 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
191 return new DicomNullValue();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
192 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
193 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
194
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195 case EVR_US: // unsigned short
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
196 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
197 Uint16 f;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
198 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
199 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
200 return new DicomString(boost::lexical_cast<std::string>(f));
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
201 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
203 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
204 return new DicomNullValue();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
205 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
206 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
207
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
208 case EVR_FL: // float single-precision
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
209 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
210 Float32 f;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
211 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
212 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
213 return new DicomString(boost::lexical_cast<std::string>(f));
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
214 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
215 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
216 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 return new DicomNullValue();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
220
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
221 case EVR_FD: // float double-precision
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
222 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
223 Float64 f;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
224 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
225 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
226 return new DicomString(boost::lexical_cast<std::string>(f));
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
227 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
228 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
229 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
230 return new DicomNullValue();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
231 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
232 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
233
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
234
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
235 /**
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 * Sequence types, should never occur at this point because of
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237 * "element.isLeaf()".
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
238 **/
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
239
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
240 case EVR_SQ: // sequence of items
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
241 return new DicomNullValue;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
242
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
243
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
244 /**
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
245 * Internal to DCMTK.
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
246 **/
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248 case EVR_ox: // OB or OW depending on context
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249 case EVR_xs: // SS or US depending on context
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 case EVR_na: // na="not applicable", for data which has no VR
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
253 case EVR_item: // used internally for items
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
254 case EVR_metainfo: // used internally for meta info datasets
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 case EVR_dataset: // used internally for datasets
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 case EVR_fileFormat: // used internally for DICOM files
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 case EVR_dicomDir: // used internally for DICOMDIR objects
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 case EVR_dirRecord: // used internally for DICOMDIR records
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 case EVR_pixelItem: // used internally for pixel items in a compressed image
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 case EVR_PixelData: // used internally for uncompressed pixeld data
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 case EVR_OverlayData: // used internally for overlay data
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 return new DicomNullValue;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 /**
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 * Default case.
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 **/
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272 default:
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 return new DicomNullValue;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 catch (boost::bad_lexical_cast)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 return new DicomNullValue;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 static void StoreElement(Json::Value& target,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 DcmElement& element,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 unsigned int maxStringLength);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 static void StoreItem(Json::Value& target,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 DcmItem& item,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289 unsigned int maxStringLength)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 target = Json::Value(Json::objectValue);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293 for (unsigned long i = 0; i < item.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295 DcmElement* element = item.getElement(i);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 StoreElement(target, *element, maxStringLength);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
298 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 static void StoreElement(Json::Value& target,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 DcmElement& element,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 unsigned int maxStringLength)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
305 assert(target.type() == Json::objectValue);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
307 DicomTag tag(FromDcmtkBridge::GetTag(element));
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
308 const std::string tagName = FromDcmtkBridge::GetName(tag);
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
309 const std::string formattedTag = tag.Format();
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 if (element.isLeaf())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 {
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
313 Json::Value value(Json::objectValue);
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
314 value["Name"] = tagName;
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
315
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element));
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 if (v->IsNull())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 {
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
319 value["Type"] = "Null";
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
320 value["Value"] = Json::nullValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 std::string s = v->AsString();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 if (maxStringLength == 0 ||
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 s.size() <= maxStringLength)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 {
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
328 value["Type"] = "String";
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
329 value["Value"] = s;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 {
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
333 value["Type"] = "TooLong";
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
334 value["Value"] = Json::nullValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 }
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
337
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
338 target[formattedTag] = value;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341 {
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
342 Json::Value children(Json::arrayValue);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 // "All subclasses of DcmElement except for DcmSequenceOfItems
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346 // etc. are not." The following cast is thus OK.
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
348
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349 for (unsigned long i = 0; i < sequence.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
350 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
351 DcmItem* child = sequence.getItem(i);
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
352 Json::Value& v = children.append(Json::objectValue);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353 StoreItem(v, *child, maxStringLength);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354 }
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
355
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
356 target[formattedTag]["Name"] = tagName;
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
357 target[formattedTag]["Type"] = "Sequence";
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
358 target[formattedTag]["Value"] = children;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 void FromDcmtkBridge::ToJson(Json::Value& root,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 DcmDataset& dataset,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 unsigned int maxStringLength)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 StoreItem(root, dataset, maxStringLength);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 void FromDcmtkBridge::ToJson(Json::Value& target,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 const std::string& path,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 unsigned int maxStringLength)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 DcmFileFormat dicom;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 if (!dicom.loadFile(path.c_str()).good())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 {
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
379 throw OrthancException(ErrorCode_BadFileFormat);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383 FromDcmtkBridge::ToJson(target, *dicom.getDataset(), maxStringLength);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
388 static void ExtractPngImagePreview(std::string& result,
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
389 DicomIntegerPixelAccessor& accessor)
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
390 {
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
391 PngWriter w;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
392
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
393 int32_t min, max;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
394 accessor.GetExtremeValues(min, max);
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
395
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
396 std::vector<uint8_t> image(accessor.GetWidth() * accessor.GetHeight(), 0);
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
397 if (min != max)
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
398 {
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
399 uint8_t* pixel = &image[0];
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
400 for (unsigned int y = 0; y < accessor.GetHeight(); y++)
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
401 {
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
402 for (unsigned int x = 0; x < accessor.GetWidth(); x++, pixel++)
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
403 {
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
404 int32_t v = accessor.GetValue(x, y);
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
405 *pixel = static_cast<uint8_t>(
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
406 boost::math::lround(static_cast<float>(v - min) /
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
407 static_cast<float>(max - min) * 255.0f));
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
408 }
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
409 }
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
410 }
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
411
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
412 w.WriteToMemory(result, accessor.GetWidth(), accessor.GetHeight(),
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
413 accessor.GetWidth(), PixelFormat_Grayscale8, &image[0]);
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
414 }
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
415
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
416
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
417 template <typename T>
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
418 static void ExtractPngImageTruncate(std::string& result,
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
419 DicomIntegerPixelAccessor& accessor,
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
420 PixelFormat format)
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
421 {
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
422 PngWriter w;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
423
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
424 std::vector<T> image(accessor.GetWidth() * accessor.GetHeight(), 0);
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
425 T* pixel = &image[0];
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
426 for (unsigned int y = 0; y < accessor.GetHeight(); y++)
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
427 {
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
428 for (unsigned int x = 0; x < accessor.GetWidth(); x++, pixel++)
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
429 {
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
430 int32_t v = accessor.GetValue(x, y);
73
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 71
diff changeset
431 if (v < std::numeric_limits<T>::min())
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
432 *pixel = std::numeric_limits<T>::min();
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
433 else if (v > std::numeric_limits<T>::max())
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
434 *pixel = std::numeric_limits<T>::max();
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
435 else
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
436 *pixel = static_cast<T>(v);
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
437 }
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
438 }
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
439
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
440 w.WriteToMemory(result, accessor.GetWidth(), accessor.GetHeight(),
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
441 accessor.GetWidth() * sizeof(T), format, &image[0]);
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
442 }
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
443
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
444
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
445 void FromDcmtkBridge::ExtractPngImage(std::string& result,
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
446 DcmDataset& dataset,
53
293038baf8f1 access to multi-frame images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
447 unsigned int frame,
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
448 ImageExtractionMode mode)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 // See also: http://support.dcmtk.org/wiki/dcmtk/howto/accessing-compressed-data
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452 std::auto_ptr<DicomIntegerPixelAccessor> accessor;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 DicomMap m;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 FromDcmtkBridge::Convert(m, dataset);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 DcmElement* e;
80
6212bf978584 status of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 79
diff changeset
458 if (dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_PIXEL_DATA), e).good() &&
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 e != NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 Uint8* pixData = NULL;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 if (e->getUint8Array(pixData) == EC_Normal)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 accessor.reset(new DicomIntegerPixelAccessor(m, pixData, e->getLength()));
53
293038baf8f1 access to multi-frame images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
465 accessor->SetCurrentFrame(frame);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
469 PixelFormat format;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
470 switch (mode)
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
471 {
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
472 case ImageExtractionMode_Preview:
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
473 case ImageExtractionMode_UInt8:
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
474 format = PixelFormat_Grayscale8;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
475 break;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
476
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
477 case ImageExtractionMode_UInt16:
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
478 format = PixelFormat_Grayscale16;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
479 break;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
480
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
481 default:
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
482 throw OrthancException(ErrorCode_NotImplemented);
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
483 }
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
484
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485 if (accessor.get() == NULL ||
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 accessor->GetWidth() == 0 ||
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 accessor->GetHeight() == 0)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 {
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
489 PngWriter w;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
490 w.WriteToMemory(result, 0, 0, 0, format, NULL);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 {
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
494 switch (mode)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 {
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
496 case ImageExtractionMode_Preview:
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
497 ExtractPngImagePreview(result, *accessor);
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
498 break;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
499
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
500 case ImageExtractionMode_UInt8:
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
501 ExtractPngImageTruncate<uint8_t>(result, *accessor, format);
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
502 break;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
503
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
504 case ImageExtractionMode_UInt16:
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
505 ExtractPngImageTruncate<uint16_t>(result, *accessor, format);
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
506 break;
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
507
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
508 default:
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
509 throw OrthancException(ErrorCode_NotImplemented);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
514
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
515 void FromDcmtkBridge::ExtractPngImage(std::string& result,
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
516 const std::string& dicomContent,
53
293038baf8f1 access to multi-frame images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
517 unsigned int frame,
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
518 ImageExtractionMode mode)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520 DcmInputBufferStream is;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521 if (dicomContent.size() > 0)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
522 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523 is.setBuffer(&dicomContent[0], dicomContent.size());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525 is.setEos();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
526
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
527 DcmFileFormat dicom;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
528 if (dicom.read(is).good())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
529 {
53
293038baf8f1 access to multi-frame images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
530 ExtractPngImage(result, *dicom.getDataset(), frame, mode);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
531 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
532 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
533 {
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
534 throw OrthancException(ErrorCode_BadFileFormat);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
535 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
536 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
537
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
538
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
539
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
540 std::string FromDcmtkBridge::GetName(const DicomTag& t)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
541 {
106
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
542 // Some patches for important tags because of different DICOM
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
543 // dictionaries between DCMTK versions
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
544 if (t == DICOM_TAG_PATIENT_NAME)
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
545 return "PatientName";
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
546
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
547 if (t == DicomTag(0x0010, 0x0030))
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
548 return "PatientBirthDate";
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
549
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
550 if (t == DicomTag(0x0010, 0x0040))
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
551 return "PatientSex";
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
552
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
553 // End of patches
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
554
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555 DcmTagKey tag(t.GetGroup(), t.GetElement());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
556 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
557 const DcmDictEntry* entry = dict.findEntry(tag, NULL);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
558
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
559 std::string s("Unknown");
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
560 if (entry != NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
561 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
562 s = std::string(entry->getTagName());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
563 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
565 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
566 return s;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
568
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
569
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
570 DicomTag FromDcmtkBridge::FindTag(const char* name)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
571 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573 const DcmDictEntry* entry = dict.findEntry(name);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
575 if (entry == NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
576 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
577 dcmDataDict.unlock();
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
578 throw OrthancException("Unknown DICOM tag");
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
579 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
580 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
581 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
582 DcmTagKey key = entry->getKey();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
583 DicomTag tag(key.getGroup(), key.getElement());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
584 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
585 return tag;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
586 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
587 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
588
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
589
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
590 void FromDcmtkBridge::Print(FILE* fp, const DicomMap& m)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
591 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
592 for (DicomMap::Map::const_iterator
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
593 it = m.map_.begin(); it != m.map_.end(); it++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
594 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
595 DicomTag t = it->first;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596 std::string s = it->second->AsString();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
597 printf("0x%04x 0x%04x (%s) [%s]\n", t.GetGroup(), t.GetElement(), GetName(t).c_str(), s.c_str());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
598 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
601
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602 void FromDcmtkBridge::ToJson(Json::Value& result,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603 const DicomMap& values)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605 if (result.type() != Json::objectValue)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
606 {
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
607 throw OrthancException(ErrorCode_BadParameterType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
608 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
609
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610 result.clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
611
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
612 for (DicomMap::Map::const_iterator
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
613 it = values.map_.begin(); it != values.map_.end(); it++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
614 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
615 result[GetName(it->first)] = it->second->AsString();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
617 }
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
618
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
619
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
620 std::string FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel level)
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
621 {
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
622 char uid[100];
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
623
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
624 switch (level)
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
625 {
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
626 case DicomRootLevel_Instance:
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
627 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT);
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
628
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
629 case DicomRootLevel_Series:
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
630 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT);
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
631
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
632 case DicomRootLevel_Study:
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
633 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT);
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
634
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
635 default:
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
636 throw OrthancException(ErrorCode_ParameterOutOfRange);
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
637 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
638 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
639
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
640 }