Mercurial > hg > orthanc

annotate OrthancServer/Sources/OrthancMoveRequestHandler.cpp @ 5112:b89833d7ce22

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Fix support for image/jpg mime type in /tools/create-dicom
author Alain Mazy <am@osimis.io>
date Wed, 23 Nov 2022 11:47:44 +0100
parents 6eff25f70121
children 0ea402b4d901
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "PrecompiledHeadersServer.h"
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24 #include "OrthancMoveRequestHandler.h"
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25
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26 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h"
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27 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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28 #include "../../OrthancFramework/Sources/Logging.h"
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29 #include "../../OrthancFramework/Sources/MetricsRegistry.h"
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30
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31 #include "OrthancConfiguration.h"
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32 #include "ServerContext.h"
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33 #include "ServerJobs/DicomModalityStoreJob.h"
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35
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36 namespace Orthanc
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37 {
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38 namespace
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39 {
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40 // Anonymous namespace to avoid clashes between compilation modules
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41
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42 class SynchronousMove : public IMoveRequestIterator
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43 {
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44 private:
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45 ServerContext& context_;
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46 const std::string& localAet_;
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47 std::vector<std::string> instances_;
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48 size_t position_;
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49 RemoteModalityParameters remote_;
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50 std::string originatorAet_;
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51 uint16_t originatorId_;
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52 std::unique_ptr<DicomStoreUserConnection> connection_;
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53
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54 public:
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55 SynchronousMove(ServerContext& context,
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56 const std::string& targetAet,
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57 const std::vector<std::string>& publicIds,
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58 const std::string& originatorAet,
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59 uint16_t originatorId) :
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60 context_(context),
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61 localAet_(context.GetDefaultLocalApplicationEntityTitle()),
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62 position_(0),
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63 originatorAet_(originatorAet),
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64 originatorId_(originatorId)
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65 {
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66 {
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67 OrthancConfiguration::ReaderLock lock;
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68 remote_ = lock.GetConfiguration().GetModalityUsingAet(targetAet);
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69 }
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71 for (size_t i = 0; i < publicIds.size(); i++)
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72 {
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73 CLOG(INFO, DICOM) << "Sending resource " << publicIds[i] << " to modality \""
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74 << targetAet << "\" in synchronous mode";
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76 std::list<std::string> tmp;
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77 context_.GetIndex().GetChildInstances(tmp, publicIds[i]);
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79 instances_.reserve(tmp.size());
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80 for (std::list<std::string>::iterator it = tmp.begin(); it != tmp.end(); ++it)
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81 {
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82 instances_.push_back(*it);
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83 }
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84 }
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85 }
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86
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87 virtual unsigned int GetSubOperationCount() const
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88 {
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89 return instances_.size();
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90 }
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91
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92 virtual Status DoNext()
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93 {
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94 if (position_ >= instances_.size())
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95 {
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96 return Status_Failure;
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97 }
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98
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99 const std::string& id = instances_[position_++];
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100
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101 std::string dicom;
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102 context_.ReadDicom(dicom, id);
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103
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104 if (connection_.get() == NULL)
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105 {
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106 DicomAssociationParameters params(localAet_, remote_);
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107 connection_.reset(new DicomStoreUserConnection(params));
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108 }
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109
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110 std::string sopClassUid, sopInstanceUid; // Unused
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111 context_.StoreWithTranscoding(sopClassUid, sopInstanceUid, *connection_, dicom,
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112 true, originatorAet_, originatorId_);
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113
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114 return Status_Success;
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115 }
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116 };
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117
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118
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119 class AsynchronousMove : public IMoveRequestIterator
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120 {
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121 private:
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122 ServerContext& context_;
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123 std::unique_ptr<DicomModalityStoreJob> job_;
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124 size_t position_;
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125 size_t countInstances_;
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126
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127 public:
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128 AsynchronousMove(ServerContext& context,
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129 const std::string& targetAet,
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130 const std::vector<std::string>& publicIds,
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131 const std::string& originatorAet,
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132 uint16_t originatorId) :
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133 context_(context),
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134 job_(new DicomModalityStoreJob(context)),
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135 position_(0)
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diff changeset
136 {
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diff changeset
137 job_->SetDescription("C-MOVE");
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diff changeset
138 //job_->SetPermissive(true); // This was the behavior of Orthanc < 1.6.0
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diff changeset
139 job_->SetPermissive(false);
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diff changeset
140 job_->SetLocalAet(context.GetDefaultLocalApplicationEntityTitle());
2940
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diff changeset
141
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diff changeset
142 {
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diff changeset
143 OrthancConfiguration::ReaderLock lock;
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diff changeset
144 job_->SetRemoteModality(lock.GetConfiguration().GetModalityUsingAet(targetAet));
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145 }
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146
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147 if (originatorId != 0)
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diff changeset
148 {
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diff changeset
149 job_->SetMoveOriginator(originatorAet, originatorId);
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150 }
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diff changeset
151
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diff changeset
152 for (size_t i = 0; i < publicIds.size(); i++)
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153 {
4287
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diff changeset
154 CLOG(INFO, DICOM) << "Sending resource " << publicIds[i] << " to modality \""
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155 << targetAet << "\" in asynchronous mode";
3301
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diff changeset
156
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diff changeset
157 std::list<std::string> tmp;
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diff changeset
158 context_.GetIndex().GetChildInstances(tmp, publicIds[i]);
3157
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diff changeset
159
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diff changeset
160 countInstances_ = tmp.size();
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161
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diff changeset
162 job_->Reserve(job_->GetCommandsCount() + tmp.size());
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diff changeset
163
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diff changeset
164 for (std::list<std::string>::iterator it = tmp.begin(); it != tmp.end(); ++it)
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diff changeset
165 {
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diff changeset
166 job_->AddInstance(*it);
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diff changeset
167 }
2624
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168 }
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169 }
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diff changeset
170
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diff changeset
171 virtual unsigned int GetSubOperationCount() const
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172 {
3157
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diff changeset
173 return countInstances_;
2624
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diff changeset
174 }
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175
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diff changeset
176 virtual Status DoNext()
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diff changeset
177 {
3157
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diff changeset
178 if (position_ >= countInstances_)
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diff changeset
179 {
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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diff changeset
180 return Status_Failure;
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diff changeset
181 }
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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parents: 3097
diff changeset
182
2624
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diff changeset
183 if (position_ == 0)
714dcddeb65f asynchronous c-movoe
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diff changeset
184 {
714dcddeb65f asynchronous c-movoe
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diff changeset
185 context_.GetJobsEngine().GetRegistry().Submit(job_.release(), 0 /* priority */);
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diff changeset
186 }
3157
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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diff changeset
187
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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diff changeset
188 position_ ++;
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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diff changeset
189 return Status_Success;
2624
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diff changeset
190 }
714dcddeb65f asynchronous c-movoe
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diff changeset
191 };
619
70d0f27e5bd3 refactoring
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diff changeset
192 }
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parents:
diff changeset
193
70d0f27e5bd3 refactoring
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parents:
diff changeset
194
4165
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
195 static bool IsNonEmptyTag(const DicomMap& dicom,
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
196 const DicomTag& tag)
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diff changeset
197 {
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
198 const DicomValue* value = dicom.TestAndGetValue(tag);
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
199 if (value == NULL ||
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
200 value->IsNull() ||
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
201 value->IsBinary())
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
202 {
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
203 return false;
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
204 }
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
205 else
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
206 {
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
207 return !value->GetContent().empty();
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
208 }
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
209 }
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
210
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
211
3301
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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parents: 3174
diff changeset
212 bool OrthancMoveRequestHandler::LookupIdentifiers(std::vector<std::string>& publicIds,
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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diff changeset
213 ResourceType level,
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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parents: 3174
diff changeset
214 const DicomMap& input)
619
70d0f27e5bd3 refactoring
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parents:
diff changeset
215 {
1724
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
216 DicomTag tag(0, 0); // Dummy initialization
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
217
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
218 switch (level)
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
219 {
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
220 case ResourceType_Patient:
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
221 tag = DICOM_TAG_PATIENT_ID;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
222 break;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
223
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
224 case ResourceType_Study:
4165
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
225 // The test below using "IsNonEmptyTag()" fixes compatibility
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
226 // with Ambra C-FIND SCU:
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
227 // https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
228 if (IsNonEmptyTag(input, DICOM_TAG_ACCESSION_NUMBER))
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
229 {
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
230 tag = DICOM_TAG_ACCESSION_NUMBER;
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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parents: 4045
diff changeset
231 }
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
232 else
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
233 {
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
234 tag = DICOM_TAG_STUDY_INSTANCE_UID;
e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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diff changeset
235 }
1724
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
236 break;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
237
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
238 case ResourceType_Series:
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
239 tag = DICOM_TAG_SERIES_INSTANCE_UID;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
240 break;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
241
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
242 case ResourceType_Instance:
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
243 tag = DICOM_TAG_SOP_INSTANCE_UID;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
244 break;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
245
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
246 default:
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
247 throw OrthancException(ErrorCode_ParameterOutOfRange);
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
248 }
1721
3bcb01028107 removed another flavor of ServerIndex::LookupIdentifier
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parents: 1573
diff changeset
249
619
70d0f27e5bd3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 if (!input.HasTag(tag))
70d0f27e5bd3 refactoring
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parents:
diff changeset
251 {
70d0f27e5bd3 refactoring
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parents:
diff changeset
252 return false;
70d0f27e5bd3 refactoring
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parents:
diff changeset
253 }
70d0f27e5bd3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
254
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1724
diff changeset
255 const DicomValue& value = input.GetValue(tag);
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1724
diff changeset
256 if (value.IsNull() ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
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257 value.IsBinary())
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258 {
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259 return false;
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260 }
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261 else
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262 {
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263 const std::string& content = value.GetContent();
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264
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265 /**
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266 * This tokenization fixes issue 154 ("Matching against list of
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267 * UID-s by C-MOVE").
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268 * https://bugs.orthanc-server.com/show_bug.cgi?id=154
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269 **/
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270
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271 std::vector<std::string> tokens;
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272 Toolbox::TokenizeString(tokens, content, '\\');
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273 for (size_t i = 0; i < tokens.size(); i++)
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274 {
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275 std::vector<std::string> matches;
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276 context_.GetIndex().LookupIdentifierExact(matches, level, tag, tokens[i]);
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277
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278 // Concatenate "publicIds" with "matches"
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279 publicIds.insert(publicIds.end(), matches.begin(), matches.end());
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280 }
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281
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282 return true;
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283 }
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284 }
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285
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286
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287 static IMoveRequestIterator* CreateIterator(ServerContext& context,
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288 const std::string& targetAet,
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289 const std::vector<std::string>& publicIds,
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290 const std::string& originatorAet,
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291 uint16_t originatorId)
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292 {
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293 if (publicIds.empty())
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294 {
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295 throw OrthancException(ErrorCode_BadRequest,
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296 "C-MOVE request matching no resource stored in Orthanc");
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297 }
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298
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299 bool synchronous;
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300
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301 {
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302 OrthancConfiguration::ReaderLock lock;
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303 synchronous = lock.GetConfiguration().GetBooleanParameter("SynchronousCMove", true);
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304 }
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305
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306 if (synchronous)
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307 {
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308 return new SynchronousMove(context, targetAet, publicIds, originatorAet, originatorId);
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309 }
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310 else
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311 {
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312 return new AsynchronousMove(context, targetAet, publicIds, originatorAet, originatorId);
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313 }
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314 }
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315
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316
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317 IMoveRequestIterator* OrthancMoveRequestHandler::Handle(const std::string& targetAet,
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318 const DicomMap& input,
2222
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319 const std::string& originatorIp,
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320 const std::string& originatorAet,
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diff changeset
321 const std::string& calledAet,
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322 uint16_t originatorId)
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323 {
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diff changeset
324 MetricsRegistry::Timer timer(context_.GetMetricsRegistry(), "orthanc_move_scp_duration_ms");
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diff changeset
325
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diff changeset
326 CLOG(INFO, DICOM) << "Move-SCU request received for AET \"" << targetAet << "\"";
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327
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diff changeset
328 {
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diff changeset
329 DicomArray query(input);
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diff changeset
330 for (size_t i = 0; i < query.GetSize(); i++)
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diff changeset
331 {
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diff changeset
332 if (!query.GetElement(i).GetValue().IsNull())
f528849ee9f7 DICOM Query/Retrieve available from Orthanc Explorer
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diff changeset
333 {
4313
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diff changeset
334 CLOG(INFO, DICOM) << " (" << query.GetElement(i).GetTag().Format()
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diff changeset
335 << ") " << FromDcmtkBridge::GetTagName(query.GetElement(i))
4376
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diff changeset
336 << " = " << context_.GetDeidentifiedContent(query.GetElement(i));
1371
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diff changeset
337 }
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diff changeset
338 }
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diff changeset
339 }
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diff changeset
340
619
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341 /**
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342 * Retrieve the query level.
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diff changeset
343 **/
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diff changeset
344
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diff changeset
345 const DicomValue* levelTmp = input.TestAndGetValue(DICOM_TAG_QUERY_RETRIEVE_LEVEL);
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diff changeset
346
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diff changeset
347 if (levelTmp == NULL ||
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diff changeset
348 levelTmp->IsNull() ||
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diff changeset
349 levelTmp->IsBinary())
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diff changeset
350 {
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diff changeset
351 // The query level is not present in the C-Move request, which
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diff changeset
352 // does not follow the DICOM standard. This is for instance the
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diff changeset
353 // behavior of Tudor DICOM. Try and automatically deduce the
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diff changeset
354 // query level: Start from the instance level, going up to the
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diff changeset
355 // patient level until a valid DICOM identifier is found.
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diff changeset
356
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diff changeset
357 std::vector<std::string> publicIds;
1231
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diff changeset
358
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diff changeset
359 if (LookupIdentifiers(publicIds, ResourceType_Instance, input) ||
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diff changeset
360 LookupIdentifiers(publicIds, ResourceType_Series, input) ||
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diff changeset
361 LookupIdentifiers(publicIds, ResourceType_Study, input) ||
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diff changeset
362 LookupIdentifiers(publicIds, ResourceType_Patient, input))
1231
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diff changeset
363 {
3301
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diff changeset
364 return CreateIterator(context_, targetAet, publicIds, originatorAet, originatorId);
1231
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diff changeset
365 }
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diff changeset
366 else
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diff changeset
367 {
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diff changeset
368 // No identifier is present in the request.
3301
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diff changeset
369 throw OrthancException(ErrorCode_BadRequest, "Invalid fields in a C-MOVE request");
1231
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diff changeset
370 }
619
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diff changeset
371 }
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parents:
diff changeset
372
1721
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parents: 1573
diff changeset
373 assert(levelTmp != NULL);
1737
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parents: 1724
diff changeset
374 ResourceType level = StringToResourceType(levelTmp->GetContent().c_str());
1231
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diff changeset
375
619
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diff changeset
376
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diff changeset
377 /**
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parents:
diff changeset
378 * Lookup for the resource to be sent.
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diff changeset
379 **/
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parents:
diff changeset
380
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diff changeset
381 std::vector<std::string> publicIds;
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382
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6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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383 if (LookupIdentifiers(publicIds, level, input))
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384 {
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6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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385 return CreateIterator(context_, targetAet, publicIds, originatorAet, originatorId);
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386 }
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3bcb01028107 removed another flavor of ServerIndex::LookupIdentifier
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387 else
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388 {
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e34c89e89aac Fix compatibility with C-MOVE SCU requests issued by Ambra
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389 throw OrthancException(ErrorCode_BadRequest, "No DICOM identifier provided in the C-MOVE request for this query retrieve level");
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390 }
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391 }
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392 }