Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerContext.cpp @ 5161:b6dc4606ab04
release notes for 1.11.3
author | Alain Mazy <am@osimis.io> |
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date | Fri, 03 Feb 2023 14:24:43 +0100 |
parents | 9f16979b6124 |
children | 6d8647122ef3 |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
224 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
9 * modify it under the terms of the GNU General Public License as | |
10 * published by the Free Software Foundation, either version 3 of the | |
11 * License, or (at your option) any later version. | |
12 * | |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
16 * General Public License for more details. | |
17 * | |
18 * You should have received a copy of the GNU General Public License | |
19 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
20 **/ | |
21 | |
22 | |
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23 #include "PrecompiledHeadersServer.h" |
224 | 24 #include "ServerContext.h" |
25 | |
4045 | 26 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h" |
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27 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h" |
4499 | 28 #include "../../OrthancFramework/Sources/DicomFormat/DicomStreamReader.h" |
4045 | 29 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h" |
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30 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h" |
4045 | 31 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" |
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32 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" |
4045 | 33 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h" |
34 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h" | |
35 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h" | |
36 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h" | |
37 #include "../../OrthancFramework/Sources/Logging.h" | |
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38 #include "../../OrthancFramework/Sources/MallocMemoryBuffer.h" |
4045 | 39 #include "../../OrthancFramework/Sources/MetricsRegistry.h" |
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40 #include "../Plugins/Engine/OrthancPlugins.h" |
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41 |
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42 #include "OrthancConfiguration.h" |
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43 #include "OrthancRestApi/OrthancRestApi.h" |
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44 #include "Search/DatabaseLookup.h" |
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45 #include "ServerJobs/OrthancJobUnserializer.h" |
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46 #include "ServerToolbox.h" |
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47 #include "StorageCommitmentReports.h" |
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48 |
794 | 49 #include <dcmtk/dcmdata/dcfilefo.h> |
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50 #include <dcmtk/dcmnet/dimse.h> |
5160 | 51 |
52 #if HAVE_MALLOC_TRIM == 1 | |
53 # include <malloc.h> | |
54 #endif | |
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55 |
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56 static size_t DICOM_CACHE_SIZE = 128 * 1024 * 1024; // 128 MB |
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57 |
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58 |
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59 /** |
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60 * IMPORTANT: We make the assumption that the same instance of |
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61 * FileStorage can be accessed from multiple threads. This seems OK |
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62 * since the filesystem implements the required locking mechanisms, |
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63 * but maybe a read-writer lock on the "FileStorage" could be |
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64 * useful. Conversely, "ServerIndex" already implements mutex-based |
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65 * locking. |
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66 **/ |
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67 |
224 | 68 namespace Orthanc |
69 { | |
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70 static void ComputeStudyTags(ExpandedResource& resource, |
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71 ServerContext& context, |
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72 const std::string& studyPublicId, |
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73 const std::set<DicomTag>& requestedTags); |
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74 |
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75 |
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76 static bool IsUncompressedTransferSyntax(DicomTransferSyntax transferSyntax) |
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77 { |
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78 return (transferSyntax == DicomTransferSyntax_LittleEndianImplicit || |
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79 transferSyntax == DicomTransferSyntax_LittleEndianExplicit || |
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80 transferSyntax == DicomTransferSyntax_BigEndianExplicit); |
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81 } |
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82 |
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83 |
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84 static bool IsTranscodableTransferSyntax(DicomTransferSyntax transferSyntax) |
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85 { |
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86 return ( |
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87 // Do not try to transcode DICOM videos (new in Orthanc 1.8.2) |
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88 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtMainLevel && |
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89 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtHighLevel && |
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90 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_1 && |
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91 transferSyntax != DicomTransferSyntax_MPEG4BDcompatibleHighProfileLevel4_1 && |
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92 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For2DVideo && |
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93 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For3DVideo && |
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94 transferSyntax != DicomTransferSyntax_MPEG4StereoHighProfileLevel4_2 && |
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95 transferSyntax != DicomTransferSyntax_HEVCMainProfileLevel5_1 && |
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96 transferSyntax != DicomTransferSyntax_HEVCMain10ProfileLevel5_1 && |
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97 |
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98 // Do not try to transcode special transfer syntaxes |
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99 transferSyntax != DicomTransferSyntax_RFC2557MimeEncapsulation && |
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100 transferSyntax != DicomTransferSyntax_XML); |
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101 } |
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102 |
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103 |
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104 ServerContext::StoreResult::StoreResult() : |
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105 status_(StoreStatus_Failure), |
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106 cstoreStatusCode_(0) |
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107 { |
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108 } |
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109 |
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110 void ServerContext::HousekeeperThread(ServerContext* that, |
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111 unsigned int sleepDelay) |
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112 { |
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113 // note, right now, this thread is started only if malloc_trim is defined |
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114 while (!that->done_) |
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115 { |
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116 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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117 |
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118 // If possible, gives memory back to the system |
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119 // (see OrthancServer/Resources/ImplementationNotes/memory_consumption.txt) |
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120 #if HAVE_MALLOC_TRIM == 1 |
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121 malloc_trim(128*1024); |
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122 #endif |
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123 } |
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124 } |
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125 |
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126 void ServerContext::ChangeThread(ServerContext* that, |
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127 unsigned int sleepDelay) |
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128 { |
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129 while (!that->done_) |
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130 { |
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131 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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132 |
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133 if (obj.get() != NULL) |
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134 { |
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135 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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136 |
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137 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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138 for (ServerListeners::iterator it = that->listeners_.begin(); |
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139 it != that->listeners_.end(); ++it) |
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140 { |
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141 try |
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142 { |
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143 try |
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144 { |
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145 it->GetListener().SignalChange(change); |
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146 } |
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147 catch (std::bad_alloc&) |
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148 { |
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149 LOG(ERROR) << "Not enough memory while signaling a change"; |
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150 } |
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151 catch (...) |
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152 { |
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153 throw OrthancException(ErrorCode_InternalError); |
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154 } |
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155 } |
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156 catch (OrthancException& e) |
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157 { |
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158 LOG(ERROR) << "Error in the " << it->GetDescription() |
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159 << " callback while signaling a change: " << e.What() |
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160 << " (code " << e.GetErrorCode() << ")"; |
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161 } |
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162 } |
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163 } |
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164 } |
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165 } |
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166 |
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167 |
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168 void ServerContext::SaveJobsThread(ServerContext* that, |
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169 unsigned int sleepDelay) |
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170 { |
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171 static const boost::posix_time::time_duration PERIODICITY = |
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172 boost::posix_time::seconds(10); |
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173 |
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174 boost::posix_time::ptime next = |
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175 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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176 |
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177 while (!that->done_) |
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178 { |
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179 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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180 |
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181 if (that->haveJobsChanged_ || |
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182 boost::posix_time::microsec_clock::universal_time() >= next) |
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183 { |
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184 that->haveJobsChanged_ = false; |
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185 that->SaveJobsEngine(); |
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186 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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187 } |
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188 } |
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189 } |
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190 |
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191 |
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192 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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193 { |
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194 haveJobsChanged_ = true; |
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195 mainLua_.SignalJobSubmitted(jobId); |
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197 #if ORTHANC_ENABLE_PLUGINS == 1 | |
198 if (HasPlugins()) | |
199 { | |
200 GetPlugins().SignalJobSubmitted(jobId); | |
201 } | |
202 #endif | |
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203 } |
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204 |
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205 |
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206 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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207 { |
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208 haveJobsChanged_ = true; |
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209 mainLua_.SignalJobSuccess(jobId); |
4129 | 210 |
211 #if ORTHANC_ENABLE_PLUGINS == 1 | |
212 if (HasPlugins()) | |
213 { | |
214 GetPlugins().SignalJobSuccess(jobId); | |
215 } | |
216 #endif | |
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217 } |
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218 |
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219 |
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220 void ServerContext::SignalJobFailure(const std::string& jobId) |
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221 { |
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222 haveJobsChanged_ = true; |
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223 mainLua_.SignalJobFailure(jobId); |
4129 | 224 |
225 #if ORTHANC_ENABLE_PLUGINS == 1 | |
226 if (HasPlugins()) | |
227 { | |
228 GetPlugins().SignalJobFailure(jobId); | |
229 } | |
230 #endif | |
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231 } |
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232 |
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233 |
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234 void ServerContext::SetupJobsEngine(bool unitTesting, |
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235 bool loadJobsFromDatabase) |
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236 { |
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237 if (loadJobsFromDatabase) |
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238 { |
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239 std::string serialized; |
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240 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry, false /* not shared */)) |
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241 { |
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242 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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243 |
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244 try |
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245 { |
4205 | 246 OrthancJobUnserializer unserializer(*this); |
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247 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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248 } |
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249 catch (OrthancException& e) |
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250 { |
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251 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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252 } |
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253 } |
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254 else |
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255 { |
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256 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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257 } |
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258 } |
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259 else |
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260 { |
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261 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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262 } |
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263 |
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264 jobsEngine_.GetRegistry().SetObserver(*this); |
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265 jobsEngine_.Start(); |
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266 isJobsEngineUnserialized_ = true; |
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267 |
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268 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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269 } |
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270 |
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271 |
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272 void ServerContext::SaveJobsEngine() |
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273 { |
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274 if (saveJobs_) |
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275 { |
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276 LOG(TRACE) << "Serializing the content of the jobs engine"; |
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277 |
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278 try |
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279 { |
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280 Json::Value value; |
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281 jobsEngine_.GetRegistry().Serialize(value); |
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282 |
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283 std::string serialized; |
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284 Toolbox::WriteFastJson(serialized, value); |
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285 |
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286 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, false /* not shared */, serialized); |
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287 } |
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288 catch (OrthancException& e) |
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289 { |
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290 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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291 } |
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292 } |
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293 } |
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294 |
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295 |
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296 void ServerContext::PublishDicomCacheMetrics() |
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297 { |
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298 metricsRegistry_->SetValue("orthanc_dicom_cache_size", |
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299 static_cast<float>(dicomCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024)); |
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300 metricsRegistry_->SetValue("orthanc_dicom_cache_count", |
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301 static_cast<float>(dicomCache_.GetNumberOfItems())); |
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302 } |
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303 |
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304 |
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305 ServerContext::ServerContext(IDatabaseWrapper& database, |
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306 IStorageArea& area, |
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307 bool unitTesting, |
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308 size_t maxCompletedJobs) : |
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309 index_(*this, database, (unitTesting ? 20 : 500)), |
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310 area_(area), |
656 | 311 compressionEnabled_(false), |
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312 storeMD5_(true), |
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313 largeDicomThrottler_(1), |
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314 dicomCache_(DICOM_CACHE_SIZE), |
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315 mainLua_(*this), |
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316 filterLua_(*this), |
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317 luaListener_(*this), |
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318 jobsEngine_(maxCompletedJobs), |
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319 #if ORTHANC_ENABLE_PLUGINS == 1 |
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320 plugins_(NULL), |
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321 #endif |
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322 done_(false), |
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323 haveJobsChanged_(false), |
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324 isJobsEngineUnserialized_(false), |
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325 metricsRegistry_(new MetricsRegistry), |
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326 isHttpServerSecure_(true), |
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327 isExecuteLuaEnabled_(false), |
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328 overwriteInstances_(false), |
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329 dcmtkTranscoder_(new DcmtkTranscoder), |
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330 isIngestTranscoding_(false), |
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331 ingestTranscodingOfUncompressed_(true), |
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332 ingestTranscodingOfCompressed_(true), |
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333 preferredTransferSyntax_(DicomTransferSyntax_LittleEndianExplicit), |
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334 deidentifyLogs_(false), |
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335 serverStartTimeUtc_(boost::posix_time::second_clock::universal_time()) |
224 | 336 { |
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337 try |
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338 { |
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339 unsigned int lossyQuality; |
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340 |
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341 { |
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342 OrthancConfiguration::ReaderLock lock; |
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343 |
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344 queryRetrieveArchive_.reset( |
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345 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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346 mediaArchive_.reset( |
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347 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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348 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET(); |
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349 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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350 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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351 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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352 |
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353 // New configuration options in Orthanc 1.5.1 |
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354 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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355 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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356 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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357 |
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358 // New configuration option in Orthanc 1.6.0 |
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359 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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360 |
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361 // New options in Orthanc 1.7.0 |
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362 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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363 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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364 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
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365 |
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366 std::string s; |
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367 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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368 { |
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369 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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370 { |
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371 isIngestTranscoding_ = true; |
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372 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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|
373 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
4384
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374 |
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375 // New options in Orthanc 1.8.2 |
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376 ingestTranscodingOfUncompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfUncompressed", true); |
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377 ingestTranscodingOfCompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfCompressed", true); |
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378 |
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379 LOG(WARNING) << " Ingest transcoding will " |
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380 << (ingestTranscodingOfUncompressed_ ? "be applied" : "*not* be applied") |
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381 << " to uncompressed transfer syntaxes (Little Endian Implicit/Explicit, Big Endian Explicit)"; |
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382 |
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383 LOG(WARNING) << " Ingest transcoding will " |
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384 << (ingestTranscodingOfCompressed_ ? "be applied" : "*not* be applied") |
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385 << " to compressed transfer syntaxes"; |
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386 } |
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387 else |
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388 { |
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389 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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390 "Unknown transfer syntax for ingest transcoding: " + s); |
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391 } |
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392 } |
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393 else |
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diff
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|
394 { |
3941
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class CleaningInstancesJob to share cleaning code by merge/split jobs
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395 isIngestTranscoding_ = false; |
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396 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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|
397 } |
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398 |
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|
399 // New options in Orthanc 1.8.2 |
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400 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyLogs", true)) |
4375
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|
401 { |
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402 deidentifyLogs_ = true; |
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403 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is enabled"; |
4375
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|
404 |
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|
405 DicomVersion version = StringToDicomVersion( |
4677
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diff
changeset
|
406 lock.GetConfiguration().GetStringParameter("DeidentifyLogsDicomVersion", "2021b")); |
4375
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|
407 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is " |
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408 << EnumerationToString(version); |
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409 |
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changeset
|
410 logsDeidentifierRules_.SetupAnonymization(version); |
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411 } |
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|
412 else |
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|
413 { |
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414 deidentifyLogs_ = false; |
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|
415 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is disabled"; |
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|
416 } |
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|
417 |
4473
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418 // New options in Orthanc 1.9.0 |
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419 if (lock.GetConfiguration().LookupStringParameter(s, "DicomScuPreferredTransferSyntax") && |
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|
420 !LookupTransferSyntax(preferredTransferSyntax_, s)) |
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421 { |
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|
422 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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|
423 "Unknown preferred transfer syntax: " + s); |
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424 } |
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425 |
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diff
changeset
|
426 CLOG(INFO, DICOM) << "Preferred transfer syntax for Orthanc C-STORE SCU: " |
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diff
changeset
|
427 << GetTransferSyntaxUid(preferredTransferSyntax_); |
4473
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diff
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|
428 |
68f52897c119
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diff
changeset
|
429 lock.GetConfiguration().GetAcceptedTransferSyntaxes(acceptedTransferSyntaxes_); |
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430 |
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431 isUnknownSopClassAccepted_ = lock.GetConfiguration().GetBooleanParameter("UnknownSopClassAccepted", false); |
3939
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432 } |
3894
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433 |
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434 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
2940
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|
435 |
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436 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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437 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
5159
f5907aecbaed
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|
438 #if HAVE_MALLOC_TRIM == 1 |
5152
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|
439 housekeeperThread_ = boost::thread(HousekeeperThread, this, 100); |
5159
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440 #else |
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441 LOG(INFO) << "Your platform does not support malloc_trim(), not starting the housekeeper thread"; |
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442 #endif |
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443 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
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444 } |
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|
445 catch (OrthancException&) |
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446 { |
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447 Stop(); |
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448 throw; |
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449 } |
224 | 450 } |
451 | |
1436
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452 |
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453 |
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|
454 ServerContext::~ServerContext() |
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|
455 { |
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456 if (!done_) |
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457 { |
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458 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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459 Stop(); |
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changeset
|
460 } |
1447
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461 } |
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462 |
1436
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463 |
1447
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|
464 void ServerContext::Stop() |
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465 { |
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466 if (!done_) |
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467 { |
1459 | 468 { |
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469 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 470 listeners_.clear(); |
471 } | |
472 | |
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473 done_ = true; |
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474 |
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475 if (changeThread_.joinable()) |
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476 { |
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477 changeThread_.join(); |
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478 } |
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diff
changeset
|
479 |
2672
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
480 if (saveJobsThread_.joinable()) |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
481 { |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
482 saveJobsThread_.join(); |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
483 } |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
484 |
4024
1d2b31fc782f
new 'changes': JobSubmitted, JobSuccess, JobFailure
Alain Mazy <alain@mazy.be>
parents:
4022
diff
changeset
|
485 jobsEngine_.GetRegistry().ResetObserver(); |
2815
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
486 |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
487 if (isJobsEngineUnserialized_) |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
488 { |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
489 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
490 SaveJobsEngine(); |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
491 } |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
492 |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
493 // Do not change the order below! |
2570
2e879c796ec7
JobsRegistry::SubmitAndWait(), StoreScuJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2507
diff
changeset
|
494 jobsEngine_.Stop(); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
495 index_.Stop(); |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
496 } |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
497 } |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
498 |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
499 |
236 | 500 void ServerContext::SetCompressionEnabled(bool enabled) |
501 { | |
502 if (enabled) | |
503 LOG(WARNING) << "Disk compression is enabled"; | |
504 else | |
505 LOG(WARNING) << "Disk compression is disabled"; | |
506 | |
507 compressionEnabled_ = enabled; | |
508 } | |
509 | |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
510 |
1126
bf67431a7383
handling of file content type in IStorageArea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1124
diff
changeset
|
511 void ServerContext::RemoveFile(const std::string& fileUuid, |
bf67431a7383
handling of file content type in IStorageArea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1124
diff
changeset
|
512 FileContentType type) |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
513 { |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
514 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
515 accessor.Remove(fileUuid, type); |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
516 } |
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
517 |
996
cf52f3bcb2b3
clarification of Lua classes wrt multithreading
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
995
diff
changeset
|
518 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
519 ServerContext::StoreResult ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
520 DicomInstanceToStore& dicom, |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
521 StoreInstanceMode mode, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
522 bool isReconstruct) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
523 { |
3814
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
524 bool overwrite; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
525 switch (mode) |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
526 { |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
527 case StoreInstanceMode_Default: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
528 overwrite = overwriteInstances_; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
529 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
530 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
531 case StoreInstanceMode_OverwriteDuplicate: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
532 overwrite = true; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
533 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
534 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
535 case StoreInstanceMode_IgnoreDuplicate: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
536 overwrite = false; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
537 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
538 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
539 default: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
540 throw OrthancException(ErrorCode_ParameterOutOfRange); |
4499 | 541 } |
542 | |
543 bool hasPixelDataOffset; | |
544 uint64_t pixelDataOffset; | |
545 hasPixelDataOffset = DicomStreamReader::LookupPixelDataOffset( | |
546 pixelDataOffset, dicom.GetBufferData(), dicom.GetBufferSize()); | |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
547 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
548 DicomTransferSyntax transferSyntax; |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
549 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
550 |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
551 DicomMap summary; |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
552 dicom.GetSummary(summary); // -> from Orthanc 1.11.1, this includes the leaf nodes and sequences |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
553 |
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
554 std::set<DicomTag> allMainDicomTags = DicomMap::GetAllMainDicomTags(); |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
555 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
556 try |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
557 { |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
558 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
559 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
560 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
561 DicomInstanceHasher hasher(summary); |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
562 resultPublicId = hasher.HashInstance(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
563 |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
564 Json::Value dicomAsJson; |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
565 dicom.GetDicomAsJson(dicomAsJson, allMainDicomTags); // don't crop any main dicom tags |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
566 |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
567 Json::Value simplifiedTags; |
4504
7d1eabfac6e0
removed cached dicom-as-json from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4500
diff
changeset
|
568 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicomAsJson, DicomToJsonFormat_Human); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
569 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
570 // Test if the instance must be filtered out |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
571 StoreResult result; |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
572 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
573 if (!isReconstruct) // skip all filters if this is a reconstruction |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
574 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
575 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
576 |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
577 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
578 { |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
579 try |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
580 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
581 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
582 { |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
583 result.SetStatus(StoreStatus_FilteredOut); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
584 result.SetCStoreStatusCode(STATUS_Success); // to keep backward compatibility, we still return 'success' |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
585 break; |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
586 } |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
587 |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
588 if (dicom.GetOrigin().GetRequestOrigin() == Orthanc::RequestOrigin_DicomProtocol) |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
589 { |
4921
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
590 uint16_t filterResult = STATUS_Success; |
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
591 if (!it->GetListener().FilterIncomingCStoreInstance(filterResult, dicom, simplifiedTags)) |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
592 { |
4921
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
593 // The instance is to be discarded |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
594 result.SetStatus(StoreStatus_FilteredOut); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
595 result.SetCStoreStatusCode(filterResult); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
596 break; |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
597 } |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
598 } |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
599 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
600 } |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
601 catch (OrthancException& e) |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
602 { |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
603 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
604 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
605 << " (code " << e.GetErrorCode() << ")"; |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
606 throw; |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
607 } |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
608 } |
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
609 } |
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
610 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
611 if (result.GetStatus() == StoreStatus_FilteredOut) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
612 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
613 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
614 return result; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
615 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
616 |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
617 // Remove the file from the DicomCache (useful if |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
618 // "OverwriteInstances" is set to "true") |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
619 dicomCache_.Invalidate(resultPublicId); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
620 PublishDicomCacheMetrics(); |
2825
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2815
diff
changeset
|
621 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
622 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
623 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
624 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
625 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
626 FileContentType_Dicom, compression, storeMD5_); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
627 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
628 ServerIndex::Attachments attachments; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
629 attachments.push_back(dicomInfo); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
630 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
631 FileInfo dicomUntilPixelData; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
632 if (hasPixelDataOffset && |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
633 (!area_.HasReadRange() || |
4519 | 634 compressionEnabled_)) |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
635 { |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
636 dicomUntilPixelData = accessor.Write(dicom.GetBufferData(), pixelDataOffset, |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
637 FileContentType_DicomUntilPixelData, compression, storeMD5_); |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
638 attachments.push_back(dicomUntilPixelData); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
639 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
640 |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
641 typedef std::map<MetadataType, std::string> InstanceMetadata; |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
642 InstanceMetadata instanceMetadata; |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
643 result.SetStatus(index_.Store( |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
644 instanceMetadata, summary, attachments, dicom.GetMetadata(), dicom.GetOrigin(), overwrite, |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
645 hasTransferSyntax, transferSyntax, hasPixelDataOffset, pixelDataOffset, isReconstruct)); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
646 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
647 // Only keep the metadata for the "instance" level |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
648 dicom.ClearMetadata(); |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
649 |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
650 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 651 it != instanceMetadata.end(); ++it) |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
652 { |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
653 dicom.AddMetadata(ResourceType_Instance, it->first, it->second); |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
654 } |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
655 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
656 if (result.GetStatus() != StoreStatus_Success) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
657 { |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
658 accessor.Remove(dicomInfo); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
659 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
660 if (dicomUntilPixelData.IsValid()) |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
661 { |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
662 accessor.Remove(dicomUntilPixelData); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
663 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
664 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
665 |
4994 | 666 if (!isReconstruct) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
667 { |
4994 | 668 // skip logs in case of reconstruction |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
669 switch (result.GetStatus()) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
670 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
671 case StoreStatus_Success: |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
672 LOG(INFO) << "New instance stored"; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
673 break; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
674 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
675 case StoreStatus_AlreadyStored: |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
676 LOG(INFO) << "Already stored"; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
677 break; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
678 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
679 case StoreStatus_Failure: |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
680 LOG(ERROR) << "Store failure"; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
681 break; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
682 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
683 default: |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
684 // This should never happen |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
685 break; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
686 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
687 |
4994 | 688 // skip all signals if this is a reconstruction |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
689 if (result.GetStatus() == StoreStatus_Success || |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
690 result.GetStatus() == StoreStatus_AlreadyStored) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
691 { |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
692 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
693 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
694 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
695 { |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
696 try |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
697 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
698 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
699 } |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
700 catch (OrthancException& e) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
701 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
702 LOG(ERROR) << "Error in the " << it->GetDescription() |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
703 << " callback while receiving an instance: " << e.What() |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
704 << " (code " << e.GetErrorCode() << ")"; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
705 } |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
706 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
707 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
708 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
709 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
710 return result; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
711 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
712 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
713 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
714 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
715 { |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
716 summary.LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
717 } |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
718 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
719 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
720 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
721 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
722 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
723 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
724 ServerContext::StoreResult ServerContext::Store(std::string& resultPublicId, |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
725 DicomInstanceToStore& receivedDicom, |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
726 StoreInstanceMode mode) |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
727 { |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
728 DicomInstanceToStore* dicom = &receivedDicom; |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
729 |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
730 // WARNING: The scope of "modifiedBuffer" and "modifiedDicom" must |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
731 // be the same as that of "dicom" |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
732 MallocMemoryBuffer modifiedBuffer; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
733 std::unique_ptr<DicomInstanceToStore> modifiedDicom; |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
734 |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
735 #if ORTHANC_ENABLE_PLUGINS == 1 |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
736 if (HasPlugins()) |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
737 { |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
738 // New in Orthanc 1.10.0 |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
739 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
740 OrthancPluginReceivedInstanceAction action = GetPlugins().ApplyReceivedInstanceCallbacks( |
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
741 modifiedBuffer, receivedDicom.GetBufferData(), receivedDicom.GetBufferSize(), receivedDicom.GetOrigin().GetRequestOrigin()); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
742 |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
743 switch (action) |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
744 { |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
745 case OrthancPluginReceivedInstanceAction_Discard: |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
746 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
747 CLOG(INFO, PLUGINS) << "A plugin has discarded the instance in its ReceivedInstanceCallback"; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
748 StoreResult result; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
749 result.SetStatus(StoreStatus_FilteredOut); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
750 return result; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
751 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
752 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
753 case OrthancPluginReceivedInstanceAction_KeepAsIs: |
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
754 // This path is also used when no ReceivedInstanceCallback is installed by the plugins |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
755 break; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
756 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
757 case OrthancPluginReceivedInstanceAction_Modify: |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
758 if (modifiedBuffer.GetSize() > 0 && |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
759 modifiedBuffer.GetData() != NULL) |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
760 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
761 CLOG(INFO, PLUGINS) << "A plugin has modified the instance in its ReceivedInstanceCallback"; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
762 modifiedDicom.reset(DicomInstanceToStore::CreateFromBuffer(modifiedBuffer.GetData(), modifiedBuffer.GetSize())); |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
763 modifiedDicom->SetOrigin(receivedDicom.GetOrigin()); |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
764 dicom = modifiedDicom.get(); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
765 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
766 else |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
767 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
768 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback plugin is not returning a modified buffer while it has modified the instance"); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
769 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
770 break; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
771 |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
772 default: |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
773 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback has returned an invalid value"); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
774 } |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
775 } |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
776 #endif |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
777 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
778 return TranscodeAndStore(resultPublicId, dicom, mode); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
779 } |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
780 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
781 ServerContext::StoreResult ServerContext::TranscodeAndStore(std::string& resultPublicId, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
782 DicomInstanceToStore* dicom, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
783 StoreInstanceMode mode, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
784 bool isReconstruct) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
785 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
786 |
5148
2df546a76e17
If specifying 'Transcode' option to /modify or /anonymize, this value will take over the 'IngestTranscoding' global configuration
Alain Mazy <am@osimis.io>
parents:
5147
diff
changeset
|
787 if (!isIngestTranscoding_ || dicom->SkipIngestTranscoding()) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
788 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
789 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
790 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
791 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
792 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
793 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
794 // Automated transcoding of incoming DICOM instance |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
795 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
796 bool transcode = false; |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
797 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
798 DicomTransferSyntax sourceSyntax; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
799 if (!dicom->LookupTransferSyntax(sourceSyntax) || |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
800 sourceSyntax == ingestTransferSyntax_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
801 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
802 // Don't transcode if the incoming DICOM is already in the proper transfer syntax |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
803 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
804 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
805 else if (!IsTranscodableTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
806 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
807 // Don't try to transcode video files, this is useless (new in |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
808 // Orthanc 1.8.2). This could be accepted in the future if |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
809 // video transcoding gets implemented. |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
810 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
811 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
812 else if (IsUncompressedTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
813 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
814 // This is an uncompressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
815 transcode = ingestTranscodingOfUncompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
816 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
817 else |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
818 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
819 // This is an compressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
820 transcode = ingestTranscodingOfCompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
821 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
822 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
823 if (!transcode) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
824 { |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
825 // No transcoding |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
826 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
827 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
828 else |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
829 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
830 // Trancoding |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
831 std::set<DicomTransferSyntax> syntaxes; |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
832 syntaxes.insert(ingestTransferSyntax_); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
833 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
834 IDicomTranscoder::DicomImage source; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
835 source.SetExternalBuffer(dicom->GetBufferData(), dicom->GetBufferSize()); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
836 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
837 IDicomTranscoder::DicomImage transcoded; |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
838 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
839 { |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
840 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
841 |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
842 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*tmp)); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
843 toStore->SetOrigin(dicom->GetOrigin()); |
5147
19ccae2e0371
Fix issue #212 (Anonymization process transcodes data and loses resource link)
Alain Mazy <am@osimis.io>
parents:
5111
diff
changeset
|
844 toStore->CopyMetadata(dicom->GetMetadata()); |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
845 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
846 StoreResult result = StoreAfterTranscoding(resultPublicId, *toStore, mode, isReconstruct); |
3938 | 847 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
848 | |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
849 return result; |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
850 } |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
851 else |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
852 { |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
853 // Cannot transcode => store the original file |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
854 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
855 } |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
856 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
857 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
858 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
859 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
860 |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
861 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
862 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
863 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
864 { |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
865 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
866 int64_t revision; |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
867 if (!index_.LookupAttachment(attachment, revision, resourceId, content)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
868 { |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
869 throw OrthancException(ErrorCode_UnknownResource); |
236 | 870 } |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
871 else |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
872 { |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
873 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
874 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
875 } |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
876 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
877 |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
878 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
879 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
880 FileContentType attachmentType, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
881 CompressionType compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
882 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
883 LOG(INFO) << "Changing compression type for attachment " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
884 << EnumerationToString(attachmentType) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
885 << " of resource " << resourceId << " to " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
886 << compression; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
887 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
888 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
889 int64_t revision; |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
890 if (!index_.LookupAttachment(attachment, revision, resourceId, attachmentType)) |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
891 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
892 throw OrthancException(ErrorCode_UnknownResource); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
893 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
894 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
895 if (attachment.GetCompressionType() == compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
896 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
897 // Nothing to do |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
898 return; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
899 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
900 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
901 std::string content; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
902 |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
903 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
904 accessor.Read(content, attachment); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
905 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
906 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
907 content.size(), attachmentType, compression, storeMD5_); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
908 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
909 try |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
910 { |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
911 int64_t newRevision; // ignored |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
912 StoreStatus status = index_.AddAttachment(newRevision, modified, resourceId, |
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
913 true, revision, modified.GetUncompressedMD5()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
914 if (status != StoreStatus_Success) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
915 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
916 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
917 throw OrthancException(ErrorCode_Database); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
918 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
919 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
920 catch (OrthancException&) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
921 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
922 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
923 throw; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
924 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
925 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
926 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
927 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
928 static void InjectEmptyPixelData(Json::Value& dicomAsJson) |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
929 { |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
930 // This is for backward compatibility with Orthanc <= 1.9.0 |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
931 Json::Value pixelData = Json::objectValue; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
932 pixelData["Name"] = "PixelData"; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
933 pixelData["Type"] = "Null"; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
934 pixelData["Value"] = Json::nullValue; |
5b929e6b3c36
removal of "dicom-as-json" attachments
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935 |
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936 dicomAsJson["7fe0,0010"] = pixelData; |
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937 } |
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|
938 |
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|
939 |
2124 | 940 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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|
941 const std::string& instancePublicId, |
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942 const std::set<DicomTag>& ignoreTagLength) |
226
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943 { |
4514
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944 /** |
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945 * CASE 1: The DICOM file, truncated at pixel data, is available |
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946 * as an attachment (it was created either because the storage |
4666 | 947 * area does not support range reads, or if "StorageCompression" |
4514
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948 * is enabled). Simply return this attachment. |
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949 **/ |
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950 |
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|
951 FileInfo attachment; |
4629 | 952 int64_t revision; // Ignored |
4514
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|
953 |
4627
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954 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData)) |
2409
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955 { |
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956 std::string dicom; |
4513
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957 |
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|
958 { |
5048
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|
959 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
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960 accessor.Read(dicom, attachment); |
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961 } |
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962 |
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963 ParsedDicomFile parsed(dicom); |
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964 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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965 InjectEmptyPixelData(result); |
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966 } |
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967 else |
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968 { |
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969 /** |
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970 * The truncated DICOM file is not stored as a standalone |
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971 * attachment. Lookup whether the pixel data offset has already |
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972 * been computed for this instance. |
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973 **/ |
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974 |
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|
975 bool hasPixelDataOffset; |
4519 | 976 uint64_t pixelDataOffset = 0; // dummy initialization |
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977 |
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978 { |
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979 std::string s; |
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980 if (index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance, |
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|
981 MetadataType_Instance_PixelDataOffset)) |
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982 { |
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983 hasPixelDataOffset = false; |
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984 |
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985 if (!s.empty()) |
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986 { |
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|
987 try |
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|
988 { |
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|
989 pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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990 hasPixelDataOffset = true; |
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|
991 } |
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992 catch (boost::bad_lexical_cast&) |
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993 { |
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994 } |
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|
995 } |
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|
996 |
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997 if (!hasPixelDataOffset) |
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|
998 { |
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|
999 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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1000 } |
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1001 } |
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1002 else |
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|
1003 { |
4514
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1004 // This instance was created by a version of Orthanc <= 1.9.0 |
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1005 hasPixelDataOffset = false; |
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1006 } |
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1007 } |
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1008 |
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1009 |
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1010 if (hasPixelDataOffset && |
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|
1011 area_.HasReadRange() && |
4627
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1012 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom) && |
4514
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1013 attachment.GetCompressionType() == CompressionType_None) |
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1014 { |
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1015 /** |
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1016 * CASE 2: The pixel data offset is known, AND that a range read |
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1017 * can be used to retrieve the truncated DICOM file. Note that |
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1018 * this case cannot be used if "StorageCompression" option is |
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1019 * "true". |
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1020 **/ |
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1021 |
4900
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1022 std::string dicom; |
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1023 |
4519 | 1024 { |
5048
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|
1025 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
4900
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1026 accessor.ReadStartRange(dicom, attachment.GetUuid(), FileContentType_Dicom, pixelDataOffset); |
4514
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1027 } |
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1028 |
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1029 assert(dicom.size() == pixelDataOffset); |
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1030 ParsedDicomFile parsed(dicom); |
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1031 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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1032 InjectEmptyPixelData(result); |
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1033 } |
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1034 else if (ignoreTagLength.empty() && |
4627
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1035 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomAsJson)) |
4514
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1036 { |
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1037 /** |
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1038 * CASE 3: This instance was created using Orthanc <= |
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1039 * 1.9.0. Reuse the old "DICOM-as-JSON" attachment if available. |
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1040 * This is for backward compatibility: A call to |
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1041 * "/tools/invalidate-tags" or to one flavors of |
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1042 * "/.../.../reconstruct" will disable this case. |
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1043 **/ |
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|
1044 |
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diff
changeset
|
1045 std::string dicomAsJson; |
4513
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|
1046 |
4514
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|
1047 { |
5048
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skip StorageCache when verifying md5 or when re-compressing attachments
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diff
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|
1048 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
4514
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|
1049 accessor.Read(dicomAsJson, attachment); |
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|
1050 } |
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|
1051 |
4514
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|
1052 if (!Toolbox::ReadJson(result, dicomAsJson)) |
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|
1053 { |
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1054 throw OrthancException(ErrorCode_CorruptedFile, |
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1055 "Corrupted DICOM-as-JSON attachment of instance: " + instancePublicId); |
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|
1056 } |
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|
1057 } |
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1058 else |
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|
1059 { |
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|
1060 /** |
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1061 * CASE 4: Neither the truncated DICOM file is accessible, nor |
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1062 * the DICOM-as-JSON summary. We have to retrieve the full DICOM |
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|
1063 * file from the storage area. |
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1064 **/ |
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1065 |
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1066 std::string dicom; |
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|
1067 ReadDicom(dicom, instancePublicId); |
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1068 |
4514
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1069 ParsedDicomFile parsed(dicom); |
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1070 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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1071 |
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1072 if (!hasPixelDataOffset) |
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|
1073 { |
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1074 /** |
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1075 * The pixel data offset was never computed for this |
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1076 * instance, which indicates that it was created using |
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1077 * Orthanc <= 1.9.0, or that calls to |
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1078 * "LookupPixelDataOffset()" from earlier versions of |
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1079 * Orthanc have failed. Try again this precomputation now |
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|
1080 * for future calls. |
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1081 **/ |
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1082 if (DicomStreamReader::LookupPixelDataOffset(pixelDataOffset, dicom) && |
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1083 pixelDataOffset < dicom.size()) |
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1084 { |
4623
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1085 index_.OverwriteMetadata(instancePublicId, MetadataType_Instance_PixelDataOffset, |
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|
1086 boost::lexical_cast<std::string>(pixelDataOffset)); |
4514
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|
1087 |
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|
1088 if (!area_.HasReadRange() || |
4519 | 1089 compressionEnabled_) |
4514
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|
1090 { |
4627
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1091 int64_t newRevision; |
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1092 AddAttachment(newRevision, instancePublicId, FileContentType_DicomUntilPixelData, |
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|
1093 dicom.empty() ? NULL: dicom.c_str(), pixelDataOffset, |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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diff
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|
1094 false /* no old revision */, -1 /* dummy revision */, "" /* dummy MD5 */); |
4514
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|
1095 } |
4513
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|
1096 } |
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|
1097 } |
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|
1098 } |
226
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|
1099 } |
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1100 } |
227
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1101 |
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1102 |
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1103 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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1104 const std::string& instancePublicId) |
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1105 { |
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1106 std::set<DicomTag> ignoreTagLength; |
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ServerContext::ReadDicomUntilPixelData()
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|
1107 ReadDicomAsJson(result, instancePublicId, ignoreTagLength); |
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1108 } |
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1109 |
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1110 |
4509
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1111 void ServerContext::ReadDicom(std::string& dicom, |
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1112 const std::string& instancePublicId) |
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1113 { |
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1114 int64_t revision; |
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1115 ReadAttachment(dicom, revision, instancePublicId, FileContentType_Dicom, true /* uncompress */); |
4509
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1116 } |
4792
434843934307
Added a StorageCache in the StorageAccessor
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|
1117 |
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1118 void ServerContext::ReadDicomForHeader(std::string& dicom, |
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Added a StorageCache in the StorageAccessor
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1119 const std::string& instancePublicId) |
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|
1120 { |
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1121 if (!ReadDicomUntilPixelData(dicom, instancePublicId)) |
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|
1122 { |
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|
1123 ReadDicom(dicom, instancePublicId); |
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1124 } |
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1125 } |
4509
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1126 |
4511
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1127 bool ServerContext::ReadDicomUntilPixelData(std::string& dicom, |
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1128 const std::string& instancePublicId) |
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1129 { |
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1130 if (!area_.HasReadRange()) |
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1131 { |
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|
1132 return false; |
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1133 } |
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1134 |
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1135 FileInfo attachment; |
4627
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1136 int64_t revision; // Ignored |
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|
1137 if (!index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom)) |
4511
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1138 { |
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1139 throw OrthancException(ErrorCode_InternalError, |
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1140 "Unable to read the DICOM file of instance " + instancePublicId); |
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1141 } |
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1142 |
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1143 std::string s; |
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1144 |
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1145 if (attachment.GetCompressionType() == CompressionType_None && |
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1146 index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance, |
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1147 MetadataType_Instance_PixelDataOffset) && |
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1148 !s.empty()) |
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1149 { |
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1150 try |
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1151 { |
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|
1152 uint64_t pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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1153 |
5048
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1154 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
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1155 |
4900
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1156 accessor.ReadStartRange(dicom, attachment.GetUuid(), attachment.GetContentType(), pixelDataOffset); |
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1157 assert(dicom.size() == pixelDataOffset); |
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1158 |
4511
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1159 return true; // Success |
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1160 } |
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1161 catch (boost::bad_lexical_cast&) |
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1162 { |
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1163 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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1164 } |
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1165 } |
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1166 |
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1167 return false; |
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1168 } |
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1169 |
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1170 |
2128
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diff
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1171 void ServerContext::ReadAttachment(std::string& result, |
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1172 int64_t& revision, |
2128
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1173 const std::string& instancePublicId, |
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1174 FileContentType content, |
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1175 bool uncompressIfNeeded, |
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1176 bool skipCache) |
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1177 { |
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1178 FileInfo attachment; |
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1179 if (!index_.LookupAttachment(attachment, revision, instancePublicId, content)) |
227
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1180 { |
2956 | 1181 throw OrthancException(ErrorCode_InternalError, |
1182 "Unable to read attachment " + EnumerationToString(content) + | |
1183 " of instance " + instancePublicId); | |
227
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1184 } |
1550 | 1185 |
3175
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1186 assert(attachment.GetContentType() == content); |
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1187 |
1550 | 1188 { |
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1189 StorageCache* cache = NULL; |
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|
1190 |
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1191 if (!skipCache) |
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1192 { |
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1193 cache = &storageCache_; |
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1194 } |
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1195 |
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1196 StorageAccessor accessor(area_, cache, GetMetricsRegistry()); |
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1197 |
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1198 if (uncompressIfNeeded) |
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1199 { |
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1200 accessor.Read(result, attachment); |
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1201 } |
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|
1202 else |
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|
1203 { |
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|
1204 // Do not uncompress the content of the storage area, return the |
98b7b9d21d83
removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1205 // raw data |
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removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1206 accessor.ReadRaw(result, attachment); |
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1207 } |
1550 | 1208 } |
227
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|
1209 } |
285
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|
1210 |
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1211 |
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changeset
|
1212 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& context, |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1213 const std::string& instancePublicId) : |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1214 context_(context), |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1215 instancePublicId_(instancePublicId) |
285
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1216 { |
4457
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|
1217 accessor_.reset(new ParsedDicomCache::Accessor(context_.dicomCache_, instancePublicId)); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1218 |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1219 if (!accessor_->IsValid()) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1220 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1221 accessor_.reset(NULL); |
285
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1222 |
4457
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diff
changeset
|
1223 // Throttle to avoid loading several large DICOM files simultaneously |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1224 largeDicomLocker_.reset(new Semaphore::Locker(context.largeDicomThrottler_)); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1225 |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1226 std::string content; |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1227 context_.ReadDicom(content, instancePublicId); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
1228 |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1229 // Release the throttle if loading "small" DICOM files (under |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1230 // 50MB, which is an arbitrary value) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1231 if (content.size() < 50 * 1024 * 1024) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1232 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1233 largeDicomLocker_.reset(NULL); |
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|
1234 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1235 |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1236 dicom_.reset(new ParsedDicomFile(content)); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
1237 dicomSize_ = content.size(); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1238 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
1239 |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1240 assert(accessor_.get() != NULL || |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1241 dicom_.get() != NULL); |
778
aebf0071020e
refactoring of the mutex for the dicom cache
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|
1242 } |
aebf0071020e
refactoring of the mutex for the dicom cache
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diff
changeset
|
1243 |
aebf0071020e
refactoring of the mutex for the dicom cache
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diff
changeset
|
1244 |
aebf0071020e
refactoring of the mutex for the dicom cache
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diff
changeset
|
1245 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
aebf0071020e
refactoring of the mutex for the dicom cache
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diff
changeset
|
1246 { |
4457
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1247 if (dicom_.get() != NULL) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1248 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1249 try |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1250 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
1251 context_.dicomCache_.Acquire(instancePublicId_, dicom_.release(), dicomSize_); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1252 context_.PublishDicomCacheMetrics(); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1253 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
1254 catch (OrthancException&) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1255 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1256 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1257 } |
285
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1258 } |
304 | 1259 |
1260 | |
4457
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changeset
|
1261 ParsedDicomFile& ServerContext::DicomCacheLocker::GetDicom() const |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1262 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
1263 if (dicom_.get() != NULL) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1264 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1265 return *dicom_; |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1266 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1267 else |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1268 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
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|
1269 assert(accessor_.get() != NULL); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1270 return accessor_->GetDicom(); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
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|
1271 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1272 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1273 |
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Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1274 |
695
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1275 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
c59bc408fb10
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1276 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1277 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
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parents:
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|
1278 storeMD5_ = storeMD5; |
695
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1279 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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689
diff
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|
1280 |
699
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1281 |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1282 bool ServerContext::AddAttachment(int64_t& newRevision, |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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4623
diff
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|
1283 const std::string& resourceId, |
699
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add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
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697
diff
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|
1284 FileContentType attachmentType, |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1285 const void* data, |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1286 size_t size, |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1287 bool hasOldRevision, |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1288 int64_t oldRevision, |
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1289 const std::string& oldMD5) |
699
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1290 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1291 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
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697
diff
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|
1292 |
1549
e5e975e9b738
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1293 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
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|
1294 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
2929e17f8447
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Sebastien Jodogne <s.jodogne@gmail.com>
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697
diff
changeset
|
1295 |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
1296 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
1549
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refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1297 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
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add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1298 |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1299 try |
699
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1300 { |
4752
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Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1301 StoreStatus status = index_.AddAttachment( |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1302 newRevision, attachment, resourceId, hasOldRevision, oldRevision, oldMD5); |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1303 if (status != StoreStatus_Success) |
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Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1304 { |
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Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1305 accessor.Remove(attachment); |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1306 return false; |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1307 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1308 else |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1309 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1310 return true; |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1311 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1312 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1313 catch (OrthancException&) |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1314 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1315 // Fixed in Orthanc 1.9.6 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1316 accessor.Remove(attachment); |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1317 throw; |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1318 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1319 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1320 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1321 |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1322 bool ServerContext::DeleteResource(Json::Value& remainingAncestor, |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1323 const std::string& uuid, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1324 ResourceType expectedType) |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1325 { |
2507 | 1326 if (expectedType == ResourceType_Instance) |
1327 { | |
1328 // remove the file from the DicomCache | |
1329 dicomCache_.Invalidate(uuid); | |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1330 PublishDicomCacheMetrics(); |
2507 | 1331 } |
1332 | |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1333 return index_.DeleteResource(remainingAncestor, uuid, expectedType); |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1334 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1335 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1336 |
1198 | 1337 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1338 { |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1339 if (change.GetResourceType() == ResourceType_Instance && |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1340 change.GetChangeType() == ChangeType_Deleted) |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1341 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1342 dicomCache_.Invalidate(change.GetPublicId()); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1343 PublishDicomCacheMetrics(); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1344 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1345 |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
1346 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1347 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1348 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1349 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
1350 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1351 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1352 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1353 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1354 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1355 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1356 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1357 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1358 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1359 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1360 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1361 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1362 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1363 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1364 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1365 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1366 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1367 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1368 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1369 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1370 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1371 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1372 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1373 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1374 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1375 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1376 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1377 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1378 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1379 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1380 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1381 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1382 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1383 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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diff
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|
1384 throw OrthancException(ErrorCode_InternalError); |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1385 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
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|
1386 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1387 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1388 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
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|
1389 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1390 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1391 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1392 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1393 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1394 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1395 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1396 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1397 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1398 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1399 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1400 #endif |
eb8fbcf008b5
fix build with plugins disabled
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diff
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|
1401 |
eb8fbcf008b5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1402 |
eb8fbcf008b5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1403 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1404 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
1405 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
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fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1406 return (plugins_ != NULL); |
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fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1407 #else |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1408 return false; |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1409 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1410 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1411 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1412 |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1413 void ServerContext::Apply(ILookupVisitor& visitor, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1414 const DatabaseLookup& lookup, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1415 ResourceType queryLevel, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1416 size_t since, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1417 size_t limit) |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1418 { |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1419 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1420 limitFindInstances_ : limitFindResults_); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1421 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1422 std::vector<std::string> resources, instances; |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1423 const DicomTagConstraint* dicomModalitiesConstraint = NULL; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1424 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1425 bool hasModalitiesInStudyLookup = (queryLevel == ResourceType_Study && |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1426 lookup.GetConstraint(dicomModalitiesConstraint, DICOM_TAG_MODALITIES_IN_STUDY) && |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1427 ((dicomModalitiesConstraint->GetConstraintType() == ConstraintType_Equal && !dicomModalitiesConstraint->GetValue().empty()) || |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1428 (dicomModalitiesConstraint->GetConstraintType() == ConstraintType_List && !dicomModalitiesConstraint->GetValues().empty()))); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1429 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1430 std::unique_ptr<DatabaseLookup> fastLookup(lookup.Clone()); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1431 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1432 if (hasModalitiesInStudyLookup) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1433 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1434 fastLookup->RemoveConstraint(DICOM_TAG_MODALITIES_IN_STUDY); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1435 } |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1436 |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1437 { |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1438 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1439 GetIndex().ApplyLookupResources(resources, &instances, *fastLookup, queryLevel, lookupLimit); |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1440 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3021
diff
changeset
|
1441 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
1442 bool complete = (databaseLimit == 0 || |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1443 resources.size() <= databaseLimit); |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1444 |
3005
8265a6b56100
DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3003
diff
changeset
|
1445 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1446 |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1447 /** |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1448 * "resources" contains the Orthanc ID of the resource at level |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1449 * "queryLevel", "instances" contains one the Orthanc ID of one |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1450 * sample instance from this resource. |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1451 **/ |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1452 assert(resources.size() == instances.size()); |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1453 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1454 size_t countResults = 0; |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1455 size_t skipped = 0; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1456 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1457 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1458 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1459 for (size_t i = 0; i < instances.size(); i++) |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1460 { |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1461 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1462 // the disk if only "main DICOM tags" are to be returned |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1463 |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1464 boost::shared_ptr<Json::Value> dicomAsJson; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1465 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1466 bool hasOnlyMainDicomTags; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1467 DicomMap dicom; |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
1468 DicomMap allMainDicomTagsFromDB; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1469 |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1470 if (!IsStorageAccessAllowedForAnswers(findStorageAccessMode_) |
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1471 || fastLookup->HasOnlyMainDicomTags()) |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1472 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1473 // Case (1): The main DICOM tags, as stored in the database, |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1474 // are sufficient to look for match |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1475 |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
1476 if (!GetIndex().GetAllMainDicomTags(allMainDicomTagsFromDB, instances[i])) |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1477 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1478 // The instance has been removed during the execution of the |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1479 // lookup, ignore it |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1480 continue; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1481 } |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1482 |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1483 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1484 // level of interest for the query |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1485 switch (queryLevel) |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1486 { |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1487 // WARNING: Don't reorder cases below, and don't add "break" |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1488 case ResourceType_Instance: |
4937
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
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diff
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|
1489 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Instance); |
3679
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|
1490 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1491 case ResourceType_Series: |
4937
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Alain Mazy <am@osimis.io>
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diff
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|
1492 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Series); |
3679
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diff
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|
1493 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1494 case ResourceType_Study: |
4937
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Alain Mazy <am@osimis.io>
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diff
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|
1495 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Study); |
3679
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|
1496 |
6358923d3ced
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1497 case ResourceType_Patient: |
4937
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Alain Mazy <am@osimis.io>
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diff
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|
1498 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Patient); |
3679
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1499 break; |
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|
1500 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1501 default: |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1502 throw OrthancException(ErrorCode_InternalError); |
6358923d3ced
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1503 } |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1504 |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1505 hasOnlyMainDicomTags = true; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1506 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1507 else |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1508 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1509 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1510 // the storage area |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1511 dicomAsJson.reset(new Json::Value); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1512 ReadDicomAsJson(*dicomAsJson, instances[i]); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1513 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1514 dicom.FromDicomAsJson(*dicomAsJson); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1515 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1516 // This map contains the entire JSON, i.e. more than the main DICOM tags |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1517 hasOnlyMainDicomTags = false; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1518 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1519 |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1520 if (fastLookup->IsMatch(dicom)) |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1521 { |
4978
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1522 bool isMatch = true; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1523 |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1524 if (hasModalitiesInStudyLookup) |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1525 { |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1526 std::set<DicomTag> requestedTags; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
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|
1527 requestedTags.insert(DICOM_TAG_MODALITIES_IN_STUDY); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1528 ExpandedResource resource; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
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|
1529 ComputeStudyTags(resource, *this, resources[i], requestedTags); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1530 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1531 std::vector<std::string> modalities; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1532 Toolbox::TokenizeString(modalities, resource.tags_.GetValue(DICOM_TAG_MODALITIES_IN_STUDY).GetContent(), '\\'); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1533 bool hasAtLeastOneModalityMatching = false; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1534 for (size_t m = 0; m < modalities.size(); m++) |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
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3005
diff
changeset
|
1535 { |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1536 hasAtLeastOneModalityMatching |= dicomModalitiesConstraint->IsMatch(modalities[m]); |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1537 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1538 |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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4977
diff
changeset
|
1539 isMatch = isMatch && hasAtLeastOneModalityMatching; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1540 // copy the value of ModalitiesInStudy such that it can be reused to build the answer |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1541 allMainDicomTagsFromDB.SetValue(DICOM_TAG_MODALITIES_IN_STUDY, resource.tags_.GetValue(DICOM_TAG_MODALITIES_IN_STUDY)); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1542 } |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1543 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1544 if (isMatch) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1545 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1546 if (skipped < since) |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1547 { |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1548 skipped++; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1549 } |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1550 else if (limit != 0 && |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1551 countResults >= limit) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1552 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1553 // Too many results, don't mark as complete |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1554 complete = false; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1555 break; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1556 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1557 else |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1558 { |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1559 if (IsStorageAccessAllowedForAnswers(findStorageAccessMode_) && |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1560 dicomAsJson.get() == NULL && |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1561 isDicomAsJsonNeeded) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1562 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1563 dicomAsJson.reset(new Json::Value); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1564 ReadDicomAsJson(*dicomAsJson, instances[i]); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1565 } |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1566 |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1567 if (hasOnlyMainDicomTags) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1568 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1569 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1570 visitor.Visit(resources[i], instances[i], allMainDicomTagsFromDB, dicomAsJson.get()); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1571 } |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1572 else |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1573 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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4977
diff
changeset
|
1574 // Remove the non-main DICOM tags from "dicom" if Case (2) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1575 // was used, for consistency with Case (1) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1576 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1577 DicomMap mainDicomTags; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1578 mainDicomTags.ExtractMainDicomTags(dicom); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1579 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1580 } |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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parents:
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diff
changeset
|
1581 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1582 countResults ++; |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1583 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1584 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1585 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1586 } |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1587 |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1588 if (complete) |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1589 { |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1590 visitor.MarkAsComplete(); |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1591 } |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1592 |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1593 LOG(INFO) << "Number of matching resources: " << countResults; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1594 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1595 |
3015
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1596 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1597 const std::string& publicId, |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4457
diff
changeset
|
1598 ResourceType level, |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1599 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1600 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1601 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1602 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1603 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1604 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1605 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1606 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1607 { |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1608 int64_t revision; // Ignored |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1609 if (index_.LookupMetadata(target, revision, publicId, level, metadata)) |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1610 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1611 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1612 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1613 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1614 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1615 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1616 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1617 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1618 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1619 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1620 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1621 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1622 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1623 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1624 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1625 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1626 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1627 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1628 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1629 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1630 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1631 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1632 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1633 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1634 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1635 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1636 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1637 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1638 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1639 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1640 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1641 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1642 const DicomValue* value = tags.TestAndGetValue(tag); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1643 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1644 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1645 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1646 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1647 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1648 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1649 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1650 // Store for reuse |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1651 index_.OverwriteMetadata(publicId, metadata, target); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1652 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1653 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1654 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1655 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1656 // Should never happen |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1657 return false; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1658 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1659 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1660 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1661 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1662 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1663 // No backward |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1664 int64_t revision; // Ignored |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1665 return index_.LookupMetadata(target, revision, publicId, level, metadata); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1666 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1667 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1668 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1669 |
2626 | 1670 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1671 const std::string& publicId) | |
1672 { | |
1673 std::list<std::string> instances; | |
1674 GetIndex().GetChildInstances(instances, publicId); | |
1675 | |
1676 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1677 | |
1678 for (std::list<std::string>::const_iterator | |
1679 it = instances.begin(); it != instances.end(); ++it) | |
1680 { | |
1681 job.AddInstance(*it); | |
1682 } | |
1683 } | |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1684 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1685 |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1686 void ServerContext::SignalUpdatedModalities() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1687 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1688 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1689 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1690 { |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1691 GetPlugins().SignalUpdatedModalities(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1692 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1693 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1694 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1695 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1696 |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1697 void ServerContext::SignalUpdatedPeers() |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1698 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1699 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1700 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1701 { |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1702 GetPlugins().SignalUpdatedPeers(); |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
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diff
changeset
|
1703 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1704 #endif |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
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diff
changeset
|
1705 } |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1706 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1707 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1708 IStorageCommitmentFactory::ILookupHandler* |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1709 ServerContext::CreateStorageCommitment(const std::string& jobId, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1710 const std::string& transactionUid, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1711 const std::vector<std::string>& sopClassUids, |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1712 const std::vector<std::string>& sopInstanceUids, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1713 const std::string& remoteAet, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1714 const std::string& calledAet) |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1715 { |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1716 #if ORTHANC_ENABLE_PLUGINS == 1 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1717 if (HasPlugins()) |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1718 { |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1719 return GetPlugins().CreateStorageCommitment( |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1720 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1721 } |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1722 #endif |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1723 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1724 return NULL; |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1725 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1726 |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1727 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1728 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1729 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1730 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1731 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1732 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1733 // Use Orthanc's built-in decoder, using the cache to speed-up |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1734 // things on multi-frame images |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1735 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1736 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1737 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1738 { |
4274 | 1739 ServerContext::DicomCacheLocker locker(*this, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1740 decoded.reset(locker.GetDicom().DecodeFrame(frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1741 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1742 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1743 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1744 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1745 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1746 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1747 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1748 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1749 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1750 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1751 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1752 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1753 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1754 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1755 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1756 // TODO: Store the raw buffer in the DicomCacheLocker |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1757 std::string dicomContent; |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1758 ReadDicom(dicomContent, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1759 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1760 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1761 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1762 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1763 decoded.reset(GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1764 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1765 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1766 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1767 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1768 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1769 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1770 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1771 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1772 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1773 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1774 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1775 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1776 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1777 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1778 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1779 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1780 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1781 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1782 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1783 ServerContext::DicomCacheLocker locker(*this, publicId); |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4196
diff
changeset
|
1784 return locker.GetDicom().DecodeFrame(frameIndex); |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1785 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1786 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1787 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1788 return NULL; // Built-in decoder is disabled |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1789 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1790 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1791 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1792 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1793 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1794 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1795 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1796 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1797 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1798 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1799 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1800 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
1801 decoded.reset(dicom.DecodeFrame(frameIndex)); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1802 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1803 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1804 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1805 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1806 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1807 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1808 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1809 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1810 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1811 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1812 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1813 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1814 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1815 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1816 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1817 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1818 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1819 { |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1820 decoded.reset(GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1821 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1822 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1823 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1824 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1825 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1826 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1827 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1828 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1829 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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3930
diff
changeset
|
1830 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1831 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1832 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1833 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1834 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1835 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1836 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1837 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1838 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1839 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
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4506
diff
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|
1840 return dicom.DecodeFrame(frameIndex); |
3931
e6606d3ec892
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1841 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1842 else |
e6606d3ec892
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1843 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1844 return NULL; |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1845 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1846 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1847 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1848 |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1849 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1850 size_t size, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1851 unsigned int frameIndex) |
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Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1852 { |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
1853 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(dicom, size)); |
8f9090b137f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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4507
diff
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|
1854 return DecodeDicomFrame(*instance, frameIndex); |
3980
e42f5445d20d
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1855 } |
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Fix decoding of DICOM images for plugins
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|
1856 |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1857 |
3894
8f7ad4989fec
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|
1858 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
8f7ad4989fec
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1859 std::string& sopInstanceUid, |
8f7ad4989fec
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1860 DicomStoreUserConnection& connection, |
8f7ad4989fec
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1861 const std::string& dicom, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1862 bool hasMoveOriginator, |
8f7ad4989fec
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parents:
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diff
changeset
|
1863 const std::string& moveOriginatorAet, |
8f7ad4989fec
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1864 uint16_t moveOriginatorId) |
8f7ad4989fec
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1865 { |
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|
1866 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
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changeset
|
1867 |
3911
0ef7f4528be2
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1868 if (!transcodeDicomProtocol_ || |
3894
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1869 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed()) |
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|
1870 { |
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|
1871 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
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|
1872 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
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1873 } |
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changeset
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1874 else |
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diff
changeset
|
1875 { |
4465
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
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parents:
4460
diff
changeset
|
1876 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), preferredTransferSyntax_, |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1877 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
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1878 } |
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diff
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|
1879 } |
3930
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diff
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|
1880 |
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diff
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|
1881 |
3944
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diff
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|
1882 bool ServerContext::Transcode(DicomImage& target, |
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diff
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|
1883 DicomImage& source /* in, "GetParsed()" possibly modified */, |
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|
1884 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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|
1885 bool allowNewSopInstanceUid) |
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|
1886 { |
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|
1887 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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|
1888 { |
3951
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diff
changeset
|
1889 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
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|
1890 { |
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|
1891 return true; |
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|
1892 } |
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|
1893 } |
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diff
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|
1894 |
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changeset
|
1895 #if ORTHANC_ENABLE_PLUGINS == 1 |
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|
1896 if (HasPlugins() && |
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diff
changeset
|
1897 GetPlugins().HasCustomTranscoder()) |
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diff
changeset
|
1898 { |
3951
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parents:
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diff
changeset
|
1899 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
aae045f802f4
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diff
changeset
|
1900 { |
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diff
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|
1901 return true; |
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|
1902 } |
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diff
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|
1903 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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|
1904 { |
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diff
changeset
|
1905 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
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diff
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|
1906 << "fallback to the built-in DCMTK transcoder"; |
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diff
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|
1907 } |
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diff
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|
1908 } |
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diff
changeset
|
1909 #endif |
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diff
changeset
|
1910 |
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parents:
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diff
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|
1911 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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preparing simplified interface for IDicomTranscoder
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|
1912 { |
3951
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parents:
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diff
changeset
|
1913 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
3944
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1914 } |
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|
1915 else |
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|
1916 { |
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|
1917 return false; |
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1918 } |
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|
1919 } |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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diff
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|
1920 |
4376
b002f9abe802
review of changeset 4375:208029732d51
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diff
changeset
|
1921 const std::string& ServerContext::GetDeidentifiedContent(const DicomElement &element) const |
4375
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Mark Poscablo <Mark.Poscablo@varian.com>
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diff
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|
1922 { |
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New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
changeset
|
1923 static const std::string redactedContent = "*** POTENTIAL PHI ***"; |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1924 static const std::string emptyContent = ""; |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1925 |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1926 const DicomTag& tag = element.GetTag(); |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1927 if (element.GetValue().IsSequence()) |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1928 { |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1929 return emptyContent; |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1930 } |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1931 |
4789
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4752
diff
changeset
|
1932 if (deidentifyLogs_ && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4752
diff
changeset
|
1933 !element.GetValue().GetContent().empty() && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4752
diff
changeset
|
1934 logsDeidentifierRules_.IsAlteredTag(tag)) |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1935 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1936 return redactedContent; |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1937 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1938 else |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1939 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1940 return element.GetValue().GetContent(); |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1941 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1942 } |
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1943 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1944 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1945 void ServerContext::GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1946 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1947 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1948 syntaxes = acceptedTransferSyntaxes_; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1949 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1950 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1951 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1952 void ServerContext::SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1953 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1954 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1955 acceptedTransferSyntaxes_ = syntaxes; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1956 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1957 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1958 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1959 bool ServerContext::IsUnknownSopClassAccepted() |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1960 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1961 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1962 return isUnknownSopClassAccepted_; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1963 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1964 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1965 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1966 void ServerContext::SetUnknownSopClassAccepted(bool accepted) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1967 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1968 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1969 isUnknownSopClassAccepted_ = accepted; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1970 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1971 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1972 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1973 static void SerializeExpandedResource(Json::Value& target, |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1974 const ExpandedResource& resource, |
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
1975 DicomToJsonFormat format, |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
1976 const std::set<DicomTag>& requestedTags) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1977 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1978 target = Json::objectValue; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1979 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1980 target["Type"] = GetResourceTypeText(resource.type_, false, true); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1981 target["ID"] = resource.id_; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1982 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1983 switch (resource.type_) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1984 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1985 case ResourceType_Patient: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1986 break; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1987 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1988 case ResourceType_Study: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1989 target["ParentPatient"] = resource.parentId_; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1990 break; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1991 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1992 case ResourceType_Series: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1993 target["ParentStudy"] = resource.parentId_; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1994 break; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1995 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1996 case ResourceType_Instance: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1997 target["ParentSeries"] = resource.parentId_; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1998 break; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1999 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2000 default: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2001 throw OrthancException(ErrorCode_InternalError); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2002 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2003 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2004 switch (resource.type_) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2005 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2006 case ResourceType_Patient: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2007 case ResourceType_Study: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2008 case ResourceType_Series: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2009 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2010 Json::Value c = Json::arrayValue; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2011 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2012 for (std::list<std::string>::const_iterator |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2013 it = resource.childrenIds_.begin(); it != resource.childrenIds_.end(); ++it) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2014 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2015 c.append(*it); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2016 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2017 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2018 if (resource.type_ == ResourceType_Patient) |
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Alain Mazy <am@osimis.io>
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|
2019 { |
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Alain Mazy <am@osimis.io>
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|
2020 target["Studies"] = c; |
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|
2021 } |
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Alain Mazy <am@osimis.io>
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|
2022 else if (resource.type_ == ResourceType_Study) |
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Alain Mazy <am@osimis.io>
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|
2023 { |
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|
2024 target["Series"] = c; |
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Alain Mazy <am@osimis.io>
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|
2025 } |
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|
2026 else |
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Alain Mazy <am@osimis.io>
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|
2027 { |
acd3f72e2a21
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Alain Mazy <am@osimis.io>
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|
2028 target["Instances"] = c; |
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Alain Mazy <am@osimis.io>
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|
2029 } |
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Alain Mazy <am@osimis.io>
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|
2030 break; |
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Alain Mazy <am@osimis.io>
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|
2031 } |
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Alain Mazy <am@osimis.io>
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|
2032 |
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changeset
|
2033 case ResourceType_Instance: |
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Alain Mazy <am@osimis.io>
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|
2034 break; |
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Alain Mazy <am@osimis.io>
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changeset
|
2035 |
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Alain Mazy <am@osimis.io>
parents:
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|
2036 default: |
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Alain Mazy <am@osimis.io>
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|
2037 throw OrthancException(ErrorCode_InternalError); |
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|
2038 } |
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|
2039 |
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|
2040 switch (resource.type_) |
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2041 { |
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|
2042 case ResourceType_Patient: |
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|
2043 case ResourceType_Study: |
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|
2044 break; |
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Alain Mazy <am@osimis.io>
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|
2045 |
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Alain Mazy <am@osimis.io>
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|
2046 case ResourceType_Series: |
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|
2047 if (resource.expectedNumberOfInstances_ < 0) |
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parents:
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|
2048 { |
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parents:
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|
2049 target["ExpectedNumberOfInstances"] = Json::nullValue; |
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|
2050 } |
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|
2051 else |
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parents:
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|
2052 { |
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|
2053 target["ExpectedNumberOfInstances"] = resource.expectedNumberOfInstances_; |
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|
2054 } |
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|
2055 target["Status"] = resource.status_; |
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|
2056 break; |
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Alain Mazy <am@osimis.io>
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|
2057 |
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|
2058 case ResourceType_Instance: |
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|
2059 { |
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|
2060 target["FileSize"] = static_cast<unsigned int>(resource.fileSize_); |
acd3f72e2a21
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Alain Mazy <am@osimis.io>
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|
2061 target["FileUuid"] = resource.fileUuid_; |
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changeset
|
2062 |
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|
2063 if (resource.indexInSeries_ < 0) |
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|
2064 { |
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Alain Mazy <am@osimis.io>
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|
2065 target["IndexInSeries"] = Json::nullValue; |
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|
2066 } |
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|
2067 else |
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|
2068 { |
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Alain Mazy <am@osimis.io>
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|
2069 target["IndexInSeries"] = resource.indexInSeries_; |
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|
2070 } |
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changeset
|
2071 |
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changeset
|
2072 break; |
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|
2073 } |
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|
2074 |
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changeset
|
2075 default: |
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|
2076 throw OrthancException(ErrorCode_InternalError); |
acd3f72e2a21
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|
2077 } |
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|
2078 |
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changeset
|
2079 if (!resource.anonymizedFrom_.empty()) |
acd3f72e2a21
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parents:
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changeset
|
2080 { |
acd3f72e2a21
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parents:
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|
2081 target["AnonymizedFrom"] = resource.anonymizedFrom_; |
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|
2082 } |
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|
2083 |
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changeset
|
2084 if (!resource.modifiedFrom_.empty()) |
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changeset
|
2085 { |
acd3f72e2a21
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|
2086 target["ModifiedFrom"] = resource.modifiedFrom_; |
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|
2087 } |
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Alain Mazy <am@osimis.io>
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changeset
|
2088 |
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|
2089 if (resource.type_ == ResourceType_Patient || |
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|
2090 resource.type_ == ResourceType_Study || |
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|
2091 resource.type_ == ResourceType_Series) |
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Alain Mazy <am@osimis.io>
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changeset
|
2092 { |
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|
2093 target["IsStable"] = resource.isStable_; |
acd3f72e2a21
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changeset
|
2094 |
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changeset
|
2095 if (!resource.lastUpdate_.empty()) |
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parents:
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changeset
|
2096 { |
acd3f72e2a21
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|
2097 target["LastUpdate"] = resource.lastUpdate_; |
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changeset
|
2098 } |
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changeset
|
2099 } |
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|
2100 |
acd3f72e2a21
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changeset
|
2101 // serialize tags |
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|
2102 |
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|
2103 static const char* const MAIN_DICOM_TAGS = "MainDicomTags"; |
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|
2104 static const char* const PATIENT_MAIN_DICOM_TAGS = "PatientMainDicomTags"; |
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|
2105 |
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|
2106 DicomMap mainDicomTags; |
acd3f72e2a21
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|
2107 resource.tags_.ExtractResourceInformation(mainDicomTags, resource.type_); |
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|
2108 |
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|
2109 target[MAIN_DICOM_TAGS] = Json::objectValue; |
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|
2110 FromDcmtkBridge::ToJson(target[MAIN_DICOM_TAGS], mainDicomTags, format); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2111 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
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diff
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|
2112 if (resource.type_ == ResourceType_Study) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2113 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2114 DicomMap patientMainDicomTags; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2115 resource.tags_.ExtractPatientInformation(patientMainDicomTags); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2116 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
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|
2117 target[PATIENT_MAIN_DICOM_TAGS] = Json::objectValue; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2118 FromDcmtkBridge::ToJson(target[PATIENT_MAIN_DICOM_TAGS], patientMainDicomTags, format); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
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|
2119 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2120 |
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2121 if (requestedTags.size() > 0) |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2122 { |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2123 static const char* const REQUESTED_TAGS = "RequestedTags"; |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2124 |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2125 DicomMap tags; |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
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|
2126 resource.tags_.ExtractTags(tags, requestedTags); |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2127 |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
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|
2128 target[REQUESTED_TAGS] = Json::objectValue; |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
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|
2129 FromDcmtkBridge::ToJson(target[REQUESTED_TAGS], tags, format); |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
2130 |
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2131 } |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2132 |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2133 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
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|
2134 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
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|
2135 |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
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diff
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|
2136 static void ComputeInstanceTags(ExpandedResource& resource, |
f377d5643538
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Alain Mazy <am@osimis.io>
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|
2137 ServerContext& context, |
f377d5643538
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Alain Mazy <am@osimis.io>
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diff
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|
2138 const std::string& instancePublicId, |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
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|
2139 const std::set<DicomTag>& requestedTags) |
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Alain Mazy <am@osimis.io>
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|
2140 { |
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new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
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diff
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|
2141 if (requestedTags.count(DICOM_TAG_INSTANCE_AVAILABILITY) > 0) |
f377d5643538
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Alain Mazy <am@osimis.io>
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4941
diff
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|
2142 { |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
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diff
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|
2143 resource.tags_.SetValue(DICOM_TAG_INSTANCE_AVAILABILITY, "ONLINE", false); |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
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diff
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|
2144 resource.missingRequestedTags_.erase(DICOM_TAG_INSTANCE_AVAILABILITY); |
f377d5643538
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Alain Mazy <am@osimis.io>
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4941
diff
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|
2145 } |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2146 } |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2147 |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2148 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2149 static void ComputeSeriesTags(ExpandedResource& resource, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
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diff
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|
2150 ServerContext& context, |
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Alain Mazy <am@osimis.io>
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|
2151 const std::string& seriesPublicId, |
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Alain Mazy <am@osimis.io>
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|
2152 const std::set<DicomTag>& requestedTags) |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
diff
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|
2153 { |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2154 if (requestedTags.count(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES) > 0) |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2155 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2156 ServerIndex& index = context.GetIndex(); |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2157 std::list<std::string> instances; |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2158 |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2159 index.GetChildren(instances, seriesPublicId); |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2160 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2161 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2162 boost::lexical_cast<std::string>(instances.size()), false); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2163 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2164 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2165 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2166 |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2167 static void ComputeStudyTags(ExpandedResource& resource, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2168 ServerContext& context, |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2169 const std::string& studyPublicId, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2170 const std::set<DicomTag>& requestedTags) |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2171 { |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2172 ServerIndex& index = context.GetIndex(); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2173 std::list<std::string> series; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2174 std::list<std::string> instances; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2175 |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2176 bool hasNbRelatedSeries = requestedTags.count(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) > 0; |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
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|
2177 bool hasNbRelatedInstances = requestedTags.count(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) > 0; |
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Alain Mazy <am@osimis.io>
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|
2178 bool hasModalitiesInStudy = requestedTags.count(DICOM_TAG_MODALITIES_IN_STUDY) > 0; |
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Alain Mazy <am@osimis.io>
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|
2179 bool hasSopClassesInStudy = requestedTags.count(DICOM_TAG_SOP_CLASSES_IN_STUDY) > 0; |
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Alain Mazy <am@osimis.io>
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|
2180 |
304514ce84ee
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|
2181 index.GetChildren(series, studyPublicId); |
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|
2182 |
304514ce84ee
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Alain Mazy <am@osimis.io>
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|
2183 if (hasModalitiesInStudy) |
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|
2184 { |
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|
2185 std::set<std::string> values; |
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|
2186 |
304514ce84ee
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|
2187 for (std::list<std::string>::const_iterator |
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|
2188 it = series.begin(); it != series.end(); ++it) |
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|
2189 { |
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|
2190 DicomMap tags; |
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|
2191 index.GetMainDicomTags(tags, *it, ResourceType_Series, ResourceType_Series); |
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|
2192 |
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|
2193 const DicomValue* value = tags.TestAndGetValue(DICOM_TAG_MODALITY); |
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|
2194 |
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|
2195 if (value != NULL && |
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|
2196 !value->IsNull() && |
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|
2197 !value->IsBinary()) |
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|
2198 { |
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|
2199 values.insert(value->GetContent()); |
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|
2200 } |
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|
2201 } |
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|
2202 |
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|
2203 std::string modalities; |
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|
2204 Toolbox::JoinStrings(modalities, values, "\\"); |
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2205 |
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|
2206 resource.tags_.SetValue(DICOM_TAG_MODALITIES_IN_STUDY, modalities, false); |
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2207 resource.missingRequestedTags_.erase(DICOM_TAG_MODALITIES_IN_STUDY); |
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2208 } |
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2209 |
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2210 if (hasNbRelatedSeries) |
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2211 { |
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2212 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES, |
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2213 boost::lexical_cast<std::string>(series.size()), false); |
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2214 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES); |
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2215 } |
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2216 |
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2217 if (hasNbRelatedInstances || hasSopClassesInStudy) |
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2218 { |
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2219 for (std::list<std::string>::const_iterator |
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2220 it = series.begin(); it != series.end(); ++it) |
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2221 { |
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2222 std::list<std::string> seriesInstancesIds; |
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2223 index.GetChildren(seriesInstancesIds, *it); |
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2224 |
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2225 instances.splice(instances.end(), seriesInstancesIds); |
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2226 } |
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2227 |
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2228 if (hasNbRelatedInstances) |
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2229 { |
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2230 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES, |
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2231 boost::lexical_cast<std::string>(instances.size()), false); |
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2232 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES); |
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2233 } |
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2234 |
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2235 if (hasSopClassesInStudy) |
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2236 { |
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2237 std::set<std::string> values; |
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2238 |
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2239 for (std::list<std::string>::const_iterator |
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2240 it = instances.begin(); it != instances.end(); ++it) |
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2241 { |
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2242 std::string value; |
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2243 |
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2244 if (context.LookupOrReconstructMetadata(value, *it, ResourceType_Instance, MetadataType_Instance_SopClassUid)) |
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2245 { |
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2246 values.insert(value); |
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2247 } |
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2248 } |
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2249 |
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2250 if (values.size() > 0) |
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2251 { |
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2252 std::string sopClassUids; |
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2253 Toolbox::JoinStrings(sopClassUids, values, "\\"); |
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2254 resource.tags_.SetValue(DICOM_TAG_SOP_CLASSES_IN_STUDY, sopClassUids, false); |
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2255 } |
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2256 |
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2257 resource.missingRequestedTags_.erase(DICOM_TAG_SOP_CLASSES_IN_STUDY); |
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2258 } |
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2259 } |
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2260 } |
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2261 |
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2262 static void ComputePatientTags(ExpandedResource& resource, |
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2263 ServerContext& context, |
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2264 const std::string& patientPublicId, |
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2265 const std::set<DicomTag>& requestedTags) |
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2266 { |
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2267 ServerIndex& index = context.GetIndex(); |
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2268 |
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2269 std::list<std::string> studies; |
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2270 std::list<std::string> series; |
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2271 std::list<std::string> instances; |
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|
2272 |
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2273 bool hasNbRelatedStudies = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) > 0; |
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2274 bool hasNbRelatedSeries = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) > 0; |
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2275 bool hasNbRelatedInstances = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES) > 0; |
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2276 |
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2277 index.GetChildren(studies, patientPublicId); |
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2278 |
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2279 if (hasNbRelatedStudies) |
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2280 { |
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2281 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES, |
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2282 boost::lexical_cast<std::string>(studies.size()), false); |
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2283 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES); |
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2284 } |
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2285 |
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2286 if (hasNbRelatedSeries || hasNbRelatedInstances) |
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2287 { |
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2288 for (std::list<std::string>::const_iterator |
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2289 it = studies.begin(); it != studies.end(); ++it) |
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2290 { |
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2291 std::list<std::string> thisSeriesIds; |
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2292 index.GetChildren(thisSeriesIds, *it); |
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2293 series.splice(series.end(), thisSeriesIds); |
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2294 } |
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2295 |
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2296 if (hasNbRelatedSeries) |
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2297 { |
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2298 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES, |
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2299 boost::lexical_cast<std::string>(series.size()), false); |
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2300 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES); |
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2301 } |
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2302 } |
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2303 |
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2304 if (hasNbRelatedInstances) |
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2305 { |
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2306 for (std::list<std::string>::const_iterator |
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2307 it = series.begin(); it != series.end(); ++it) |
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2308 { |
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2309 std::list<std::string> thisInstancesIds; |
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2310 index.GetChildren(thisInstancesIds, *it); |
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|
2311 instances.splice(instances.end(), thisInstancesIds); |
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2312 } |
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2313 |
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2314 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES, |
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|
2315 boost::lexical_cast<std::string>(instances.size()), false); |
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2316 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES); |
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2317 } |
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2318 } |
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2319 |
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2320 |
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2321 static void ComputeTags(ExpandedResource& resource, |
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2322 ServerContext& context, |
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2323 const std::string& resourceId, |
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2324 ResourceType level, |
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2325 const std::set<DicomTag>& requestedTags) |
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2326 { |
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2327 if (level == ResourceType_Patient |
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2328 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Patient)) |
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2329 { |
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2330 ComputePatientTags(resource, context, resourceId, requestedTags); |
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2331 } |
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2332 |
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2333 if (level == ResourceType_Study |
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2334 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Study)) |
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2335 { |
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|
2336 ComputeStudyTags(resource, context, resourceId, requestedTags); |
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2337 } |
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2338 |
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2339 if (level == ResourceType_Series |
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2340 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Series)) |
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2341 { |
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2342 ComputeSeriesTags(resource, context, resourceId, requestedTags); |
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|
2343 } |
4944
f377d5643538
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Alain Mazy <am@osimis.io>
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|
2344 |
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2345 if (level == ResourceType_Instance |
f377d5643538
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2346 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Instance)) |
f377d5643538
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Alain Mazy <am@osimis.io>
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|
2347 { |
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Alain Mazy <am@osimis.io>
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|
2348 ComputeInstanceTags(resource, context, resourceId, requestedTags); |
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Alain Mazy <am@osimis.io>
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2349 } |
4940
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2350 } |
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2351 |
4935
acd3f72e2a21
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Alain Mazy <am@osimis.io>
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|
2352 bool ServerContext::ExpandResource(Json::Value& target, |
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Alain Mazy <am@osimis.io>
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2353 const std::string& publicId, |
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Alain Mazy <am@osimis.io>
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|
2354 ResourceType level, |
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
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diff
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|
2355 DicomToJsonFormat format, |
5058
d4e5ca0c9307
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Alain Mazy <am@osimis.io>
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|
2356 const std::set<DicomTag>& requestedTags, |
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Alain Mazy <am@osimis.io>
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|
2357 bool allowStorageAccess) |
4935
acd3f72e2a21
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Alain Mazy <am@osimis.io>
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|
2358 { |
4937
3f9b9865c8cc
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|
2359 std::string unusedInstanceId; |
4940
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2360 Json::Value* unusedDicomAsJson = NULL; |
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|
2361 DicomMap unusedMainDicomTags; |
4937
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2362 |
5058
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|
2363 return ExpandResource(target, publicId, unusedMainDicomTags, unusedInstanceId, unusedDicomAsJson, level, format, requestedTags, allowStorageAccess); |
4937
3f9b9865c8cc
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|
2364 } |
3f9b9865c8cc
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|
2365 |
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|
2366 bool ServerContext::ExpandResource(Json::Value& target, |
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|
2367 const std::string& publicId, |
4940
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2368 const DicomMap& mainDicomTags, // optional: the main dicom tags for the resource (if already available) |
4939 | 2369 const std::string& instanceId, // optional: the id of an instance for the resource (if already available) |
5060
e69a3ff39bc5
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Alain Mazy <am@osimis.io>
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|
2370 const Json::Value* dicomAsJson, // optional: the dicom-as-json for the resource (if already available) |
4937
3f9b9865c8cc
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|
2371 ResourceType level, |
3f9b9865c8cc
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|
2372 DicomToJsonFormat format, |
5058
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|
2373 const std::set<DicomTag>& requestedTags, |
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|
2374 bool allowStorageAccess) |
4937
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|
2375 { |
4935
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Alain Mazy <am@osimis.io>
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|
2376 ExpandedResource resource; |
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|
2377 |
5058
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|
2378 if (ExpandResource(resource, publicId, mainDicomTags, instanceId, dicomAsJson, level, requestedTags, ExpandResourceDbFlags_Default, allowStorageAccess)) |
4939 | 2379 { |
2380 SerializeExpandedResource(target, resource, format, requestedTags); | |
2381 return true; | |
2382 } | |
2383 | |
2384 return false; | |
2385 } | |
2386 | |
2387 bool ServerContext::ExpandResource(ExpandedResource& resource, | |
2388 const std::string& publicId, | |
4940
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2389 const DicomMap& mainDicomTags, // optional: the main dicom tags for the resource (if already available) |
4939 | 2390 const std::string& instanceId, // optional: the id of an instance for the resource (if already available) |
4940
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|
2391 const Json::Value* dicomAsJson, // optional: the dicom-as-json for the resource (if already available) |
4939 | 2392 ResourceType level, |
4940
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|
2393 const std::set<DicomTag>& requestedTags, |
5058
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2394 ExpandResourceDbFlags expandFlags, |
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|
2395 bool allowStorageAccess) |
4939 | 2396 { |
4940
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|
2397 // first try to get the tags from what is already available |
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|
2398 |
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|
2399 if ((expandFlags & ExpandResourceDbFlags_IncludeMainDicomTags) |
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2400 && (mainDicomTags.GetSize() > 0) |
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2401 && (dicomAsJson != NULL)) |
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2402 { |
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|
2403 |
4984 | 2404 resource.tags_.Merge(mainDicomTags); |
4940
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|
2405 |
4984 | 2406 if (dicomAsJson->isObject()) |
4940
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|
2407 { |
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|
2408 resource.tags_.FromDicomAsJson(*dicomAsJson); |
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2409 } |
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2410 |
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|
2411 std::set<DicomTag> retrievedTags; |
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2412 std::set<DicomTag> missingTags; |
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changeset
|
2413 resource.tags_.GetTags(retrievedTags); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2414 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2415 Toolbox::GetMissingsFromSet(missingTags, requestedTags, retrievedTags); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2416 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2417 // if all possible tags have been read, no need to get them from DB anymore |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2418 if (missingTags.size() == 0 || DicomMap::HasOnlyComputedTags(missingTags)) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2419 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2420 expandFlags = static_cast<ExpandResourceDbFlags>(expandFlags & ~ExpandResourceDbFlags_IncludeMainDicomTags); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2421 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2422 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2423 if (missingTags.size() == 0 && expandFlags == ExpandResourceDbFlags_None) // we have already retrieved anything we need |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2424 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2425 return true; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2426 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2427 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2428 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2429 if (expandFlags != ExpandResourceDbFlags_None |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
2430 && GetIndex().ExpandResource(resource, publicId, level, requestedTags, static_cast<ExpandResourceDbFlags>(expandFlags | ExpandResourceDbFlags_IncludeMetadata))) // we always need the metadata to get the mainDicomTagsSignature |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2431 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2432 // check the main dicom tags list has not changed since the resource was stored |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2433 if (resource.mainDicomTagsSignature_ != DicomMap::GetMainDicomTagsSignature(resource.type_)) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2434 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2435 OrthancConfiguration::ReaderLock lock; |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2436 if (lock.GetConfiguration().IsWarningEnabled(Warnings_002_InconsistentDicomTagsInDb)) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2437 { |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2438 LOG(WARNING) << "W002: " << Orthanc::GetResourceTypeText(resource.type_, false , false) << " has been stored with another version of Main Dicom Tags list, you should POST to /" << Orthanc::GetResourceTypeText(resource.type_, true, false) << "/" << resource.id_ << "/reconstruct to update the list of tags saved in DB. Some MainDicomTags might be missing from this answer."; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2439 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2440 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2441 |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2442 // possibly merge missing requested tags from dicom-as-json |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
2443 if (allowStorageAccess |
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
2444 && !resource.missingRequestedTags_.empty() && !DicomMap::HasOnlyComputedTags(resource.missingRequestedTags_)) |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2445 { |
4941 | 2446 OrthancConfiguration::ReaderLock lock; |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2447 if (lock.GetConfiguration().IsWarningEnabled(Warnings_001_TagsBeingReadFromStorage)) |
4941 | 2448 { |
2449 std::set<DicomTag> missingTags; | |
2450 Toolbox::AppendSets(missingTags, resource.missingRequestedTags_); | |
4981 | 2451 for (std::set<DicomTag>::const_iterator it = resource.missingRequestedTags_.begin(); it != resource.missingRequestedTags_.end(); ++it) |
4941 | 2452 { |
2453 if (DicomMap::IsComputedTag(*it)) | |
2454 { | |
2455 missingTags.erase(*it); | |
2456 } | |
2457 } | |
2458 | |
2459 std::string missings; | |
2460 FromDcmtkBridge::FormatListOfTags(missings, missingTags); | |
2461 | |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2462 LOG(WARNING) << "W001: Accessing Dicom tags from storage when accessing " << Orthanc::GetResourceTypeText(resource.type_, false , false) << " : " << missings; |
4941 | 2463 } |
2464 | |
2465 | |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2466 std::string instanceId_ = instanceId; |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2467 DicomMap tagsFromJson; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2468 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2469 if (dicomAsJson == NULL) |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2470 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2471 if (instanceId_.empty()) |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2472 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2473 if (level == ResourceType_Instance) |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2474 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2475 instanceId_ = publicId; |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2476 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2477 else |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2478 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2479 std::list<std::string> instancesIds; |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2480 GetIndex().GetChildInstances(instancesIds, publicId); |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2481 if (instancesIds.size() < 1) |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2482 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2483 throw OrthancException(ErrorCode_InternalError, "ExpandResource: no instances found"); |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2484 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2485 instanceId_ = instancesIds.front(); |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2486 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2487 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2488 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2489 Json::Value tmpDicomAsJson; |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
2490 ReadDicomAsJson(tmpDicomAsJson, instanceId_, resource.missingRequestedTags_ /* ignoreTagLength */); // read all tags from DICOM and avoid cropping requested tags |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2491 tagsFromJson.FromDicomAsJson(tmpDicomAsJson, false /* append */, true /* parseSequences*/); |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2492 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2493 else |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2494 { |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2495 tagsFromJson.FromDicomAsJson(*dicomAsJson, false /* append */, true /* parseSequences*/); |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2496 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2497 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2498 resource.tags_.Merge(tagsFromJson); |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2499 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2500 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2501 // compute the requested tags |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2502 ComputeTags(resource, *this, publicId, level, requestedTags); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2503 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2504 else |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2505 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2506 return false; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2507 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2508 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2509 return true; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2510 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2511 |
5111
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2512 int64_t ServerContext::GetServerUpTime() const |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2513 { |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2514 boost::posix_time::ptime nowUtc = boost::posix_time::second_clock::universal_time(); |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2515 boost::posix_time::time_duration elapsed = nowUtc - serverStartTimeUtc_; |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2516 |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2517 return elapsed.total_seconds(); |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2518 } |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2519 |
224 | 2520 } |