Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 1484:b64f48e19ab9
fix mainline version
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Sun, 02 Aug 2015 15:57:45 +0200 |
| parents | c0bdc47165ef |
| children | f967bdf8534e |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
| 0 | 5 * |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
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33 #include "PrecompiledHeadersServer.h" |
| 0 | 34 #include "ServerIndex.h" |
| 35 | |
| 6 | 36 #ifndef NOMINMAX |
| 2 | 37 #define NOMINMAX |
| 6 | 38 #endif |
| 39 | |
| 1198 | 40 #include "ServerIndexChange.h" |
| 8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
| 0 | 43 #include "../Core/Toolbox.h" |
| 44 #include "../Core/Uuid.h" | |
| 45 #include "../Core/DicomFormat/DicomArray.h" | |
| 46 #include "FromDcmtkBridge.h" | |
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47 #include "ServerContext.h" |
| 0 | 48 |
| 49 #include <boost/lexical_cast.hpp> | |
| 50 #include <stdio.h> | |
| 108 | 51 #include <glog/logging.h> |
| 0 | 52 |
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53 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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54 |
| 62 | 55 namespace Orthanc |
| 0 | 56 { |
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57 class ServerIndex::Listener : public IDatabaseListener |
| 0 | 58 { |
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59 private: |
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60 struct FileToRemove |
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61 { |
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62 private: |
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63 std::string uuid_; |
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64 FileContentType type_; |
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65 |
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66 public: |
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67 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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68 type_(info.GetContentType()) |
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69 { |
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70 } |
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71 |
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72 const std::string& GetUuid() const |
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73 { |
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74 return uuid_; |
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75 } |
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76 |
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77 FileContentType GetContentType() const |
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78 { |
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79 return type_; |
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80 } |
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81 }; |
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82 |
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83 ServerContext& context_; |
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84 bool hasRemainingLevel_; |
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85 ResourceType remainingType_; |
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86 std::string remainingPublicId_; |
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87 std::list<FileToRemove> pendingFilesToRemove_; |
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88 std::list<ServerIndexChange> pendingChanges_; |
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89 uint64_t sizeOfFilesToRemove_; |
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90 bool insideTransaction_; |
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91 |
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92 void Reset() |
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93 { |
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94 sizeOfFilesToRemove_ = 0; |
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95 hasRemainingLevel_ = false; |
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96 pendingFilesToRemove_.clear(); |
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97 pendingChanges_.clear(); |
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98 } |
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99 |
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100 public: |
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101 Listener(ServerContext& context) : context_(context), |
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102 insideTransaction_(false) |
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103 { |
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104 Reset(); |
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105 assert(ResourceType_Patient < ResourceType_Study && |
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106 ResourceType_Study < ResourceType_Series && |
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107 ResourceType_Series < ResourceType_Instance); |
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108 } |
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109 |
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110 void StartTransaction() |
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111 { |
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112 Reset(); |
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113 insideTransaction_ = true; |
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114 } |
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115 |
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116 void EndTransaction() |
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117 { |
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118 insideTransaction_ = false; |
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119 } |
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120 |
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121 uint64_t GetSizeOfFilesToRemove() |
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122 { |
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123 return sizeOfFilesToRemove_; |
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124 } |
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125 |
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126 void CommitFilesToRemove() |
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127 { |
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128 for (std::list<FileToRemove>::const_iterator |
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129 it = pendingFilesToRemove_.begin(); |
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130 it != pendingFilesToRemove_.end(); ++it) |
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131 { |
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132 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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133 } |
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134 } |
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135 |
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136 void CommitChanges() |
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137 { |
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138 for (std::list<ServerIndexChange>::const_iterator |
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139 it = pendingChanges_.begin(); |
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140 it != pendingChanges_.end(); ++it) |
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141 { |
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142 context_.SignalChange(*it); |
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143 } |
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144 } |
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145 |
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146 virtual void SignalRemainingAncestor(ResourceType parentType, |
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147 const std::string& publicId) |
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148 { |
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149 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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150 |
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151 if (hasRemainingLevel_) |
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152 { |
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153 if (parentType < remainingType_) |
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154 { |
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155 remainingType_ = parentType; |
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156 remainingPublicId_ = publicId; |
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157 } |
| 1158 | 158 } |
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159 else |
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160 { |
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161 hasRemainingLevel_ = true; |
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162 remainingType_ = parentType; |
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163 remainingPublicId_ = publicId; |
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164 } |
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165 } |
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166 |
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167 virtual void SignalFileDeleted(const FileInfo& info) |
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168 { |
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169 assert(Toolbox::IsUuid(info.GetUuid())); |
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170 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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171 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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172 } |
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173 |
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174 virtual void SignalChange(const ServerIndexChange& change) |
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175 { |
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176 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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177 << EnumerationToString(change.GetResourceType()) << ": " |
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178 << EnumerationToString(change.GetChangeType()); |
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179 |
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180 if (insideTransaction_) |
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181 { |
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182 pendingChanges_.push_back(change); |
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183 } |
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184 else |
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185 { |
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186 context_.SignalChange(change); |
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187 } |
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188 } |
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189 |
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190 bool HasRemainingLevel() const |
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191 { |
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192 return hasRemainingLevel_; |
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193 } |
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194 |
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195 ResourceType GetRemainingType() const |
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196 { |
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197 assert(HasRemainingLevel()); |
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198 return remainingType_; |
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199 } |
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200 |
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201 const std::string& GetRemainingPublicId() const |
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202 { |
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203 assert(HasRemainingLevel()); |
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204 return remainingPublicId_; |
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205 } |
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206 }; |
| 0 | 207 |
| 208 | |
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209 class ServerIndex::Transaction |
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210 { |
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211 private: |
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212 ServerIndex& index_; |
| 1235 | 213 std::auto_ptr<SQLite::ITransaction> transaction_; |
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214 bool isCommitted_; |
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215 |
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216 public: |
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217 Transaction(ServerIndex& index) : |
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218 index_(index), |
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219 isCommitted_(false) |
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220 { |
| 1247 | 221 transaction_.reset(index_.db_.StartTransaction()); |
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222 transaction_->Begin(); |
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223 |
| 1270 | 224 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
| 225 | |
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226 index_.listener_->StartTransaction(); |
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227 } |
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228 |
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229 ~Transaction() |
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230 { |
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231 index_.listener_->EndTransaction(); |
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232 |
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233 if (!isCommitted_) |
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234 { |
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235 transaction_->Rollback(); |
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236 } |
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237 } |
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238 |
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239 void Commit(uint64_t sizeOfAddedFiles) |
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240 { |
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241 if (!isCommitted_) |
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242 { |
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243 transaction_->Commit(); |
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244 |
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245 // We can remove the files once the SQLite transaction has |
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246 // been successfully committed. Some files might have to be |
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247 // deleted because of recycling. |
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248 index_.listener_->CommitFilesToRemove(); |
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249 |
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250 index_.currentStorageSize_ += sizeOfAddedFiles; |
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251 |
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252 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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253 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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254 |
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255 // Send all the pending changes to the Orthanc plugins |
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256 index_.listener_->CommitChanges(); |
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257 |
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258 isCommitted_ = true; |
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259 } |
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260 } |
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261 }; |
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262 |
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263 |
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264 class ServerIndex::UnstableResourcePayload |
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265 { |
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266 private: |
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267 ResourceType type_; |
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268 std::string publicId_; |
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269 boost::posix_time::ptime time_; |
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270 |
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271 public: |
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272 UnstableResourcePayload() : type_(ResourceType_Instance) |
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273 { |
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274 } |
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275 |
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276 UnstableResourcePayload(Orthanc::ResourceType type, |
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277 const std::string& publicId) : |
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278 type_(type), |
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279 publicId_(publicId) |
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280 { |
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281 time_ = boost::posix_time::second_clock::local_time(); |
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282 } |
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283 |
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284 unsigned int GetAge() const |
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285 { |
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286 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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287 } |
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288 |
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289 ResourceType GetResourceType() const |
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290 { |
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291 return type_; |
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292 } |
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293 |
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294 const std::string& GetPublicId() const |
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295 { |
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296 return publicId_; |
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297 } |
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298 }; |
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299 |
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300 |
| 212 | 301 bool ServerIndex::DeleteResource(Json::Value& target, |
| 0 | 302 const std::string& uuid, |
| 202 | 303 ResourceType expectedType) |
| 0 | 304 { |
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305 boost::mutex::scoped_lock lock(mutex_); |
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306 |
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307 Transaction t(*this); |
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308 |
| 202 | 309 int64_t id; |
| 310 ResourceType type; | |
| 1294 | 311 if (!db_.LookupResource(id, type, uuid) || |
| 202 | 312 expectedType != type) |
| 0 | 313 { |
| 314 return false; | |
| 315 } | |
| 202 | 316 |
| 1247 | 317 db_.DeleteResource(id); |
| 0 | 318 |
| 202 | 319 if (listener_->HasRemainingLevel()) |
| 0 | 320 { |
| 202 | 321 ResourceType type = listener_->GetRemainingType(); |
| 322 const std::string& uuid = listener_->GetRemainingPublicId(); | |
| 0 | 323 |
| 324 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
| 204 | 325 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
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326 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
| 0 | 327 target["RemainingAncestor"]["ID"] = uuid; |
| 328 } | |
| 329 else | |
| 330 { | |
| 331 target["RemainingAncestor"] = Json::nullValue; | |
| 332 } | |
| 333 | |
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334 t.Commit(0); |
|
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335 |
| 0 | 336 return true; |
| 337 } | |
| 338 | |
| 339 | |
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340 void ServerIndex::FlushThread(ServerIndex* that) |
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341 { |
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342 // By default, wait for 10 seconds before flushing |
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343 unsigned int sleep = 10; |
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344 |
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345 try |
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346 { |
| 744 | 347 boost::mutex::scoped_lock lock(that->mutex_); |
| 1239 | 348 std::string sleepString; |
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349 |
| 1247 | 350 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
| 1239 | 351 Toolbox::IsInteger(sleepString)) |
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352 { |
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353 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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354 } |
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355 } |
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356 catch (boost::bad_lexical_cast&) |
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357 { |
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358 } |
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359 |
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360 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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361 |
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362 unsigned int count = 0; |
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363 |
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364 while (!that->done_) |
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365 { |
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366 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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367 count++; |
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368 if (count < sleep) |
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369 { |
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370 continue; |
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371 } |
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372 |
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373 boost::mutex::scoped_lock lock(that->mutex_); |
| 1247 | 374 that->db_.FlushToDisk(); |
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375 count = 0; |
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376 } |
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377 |
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378 LOG(INFO) << "Stopping the database flushing thread"; |
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379 } |
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380 |
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381 |
| 1247 | 382 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
| 433 | 383 int64_t series, |
| 384 const DicomMap& dicomSummary) | |
| 385 { | |
| 386 try | |
| 387 { | |
| 656 | 388 const DicomValue* value; |
| 389 const DicomValue* value2; | |
| 390 | |
| 433 | 391 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
| 392 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
| 393 { | |
| 394 // Patch for series with temporal positions thanks to Will Ryder | |
| 395 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->AsString()); | |
| 396 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->AsString()); | |
| 397 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); | |
| 398 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 399 } | |
| 400 | |
| 401 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
| 402 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
| 403 { | |
| 404 // Support of Cardio-PET images | |
| 405 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->AsString()); | |
| 406 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->AsString()); | |
| 407 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); | |
| 408 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 409 } | |
| 410 | |
| 411 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
| 412 { | |
| 413 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->AsString()); | |
| 414 } | |
| 415 } | |
| 416 catch (boost::bad_lexical_cast) | |
| 417 { | |
| 418 } | |
| 419 } | |
| 420 | |
| 421 | |
| 1237 | 422 |
| 423 | |
| 1238 | 424 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
| 1237 | 425 int64_t id, |
| 426 MetadataType type) | |
| 427 { | |
| 1238 | 428 std::string s; |
| 1247 | 429 if (!db_.LookupMetadata(s, id, type)) |
| 1237 | 430 { |
| 431 return false; | |
| 432 } | |
| 433 | |
| 434 try | |
| 435 { | |
| 1238 | 436 result = boost::lexical_cast<int64_t>(s); |
| 1237 | 437 return true; |
| 438 } | |
| 439 catch (boost::bad_lexical_cast&) | |
| 440 { | |
| 441 return false; | |
| 442 } | |
| 443 } | |
| 444 | |
| 445 | |
| 1297 | 446 void ServerIndex::LogChange(int64_t internalId, |
| 447 ChangeType changeType, | |
| 448 ResourceType resourceType, | |
| 449 const std::string& publicId) | |
| 450 { | |
| 451 ServerIndexChange change(changeType, resourceType, publicId); | |
|
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452 |
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453 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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454 { |
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455 db_.LogChange(internalId, change); |
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456 } |
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457 |
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458 assert(listener_.get() != NULL); |
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459 listener_->SignalChange(change); |
| 1297 | 460 } |
| 461 | |
| 1237 | 462 |
| 463 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
| 464 { | |
| 465 std::string oldValue; | |
| 466 | |
| 1247 | 467 if (db_.LookupGlobalProperty(oldValue, property)) |
| 1237 | 468 { |
| 469 uint64_t oldNumber; | |
| 470 | |
| 471 try | |
| 472 { | |
| 473 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
| 1247 | 474 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
| 1237 | 475 return oldNumber + 1; |
| 476 } | |
| 477 catch (boost::bad_lexical_cast&) | |
| 478 { | |
| 479 throw OrthancException(ErrorCode_InternalError); | |
| 480 } | |
| 481 } | |
| 482 else | |
| 483 { | |
| 484 // Initialize the sequence at "1" | |
| 1247 | 485 db_.SetGlobalProperty(property, "1"); |
| 1237 | 486 return 1; |
| 487 } | |
| 488 } | |
| 489 | |
| 490 | |
| 491 | |
| 1286 | 492 void ServerIndex::SetMainDicomTags(int64_t resource, |
| 493 const DicomMap& tags) | |
| 494 { | |
| 495 DicomArray flattened(tags); | |
| 496 for (size_t i = 0; i < flattened.GetSize(); i++) | |
| 497 { | |
| 498 const DicomElement& element = flattened.GetElement(i); | |
| 499 db_.SetMainDicomTag(resource, element.GetTag(), element.GetValue().AsString()); | |
| 500 } | |
| 501 } | |
| 502 | |
| 503 | |
| 1299 | 504 int64_t ServerIndex::CreateResource(const std::string& publicId, |
| 505 ResourceType type) | |
| 506 { | |
| 507 int64_t id = db_.CreateResource(publicId, type); | |
| 508 | |
| 509 ChangeType changeType; | |
| 510 switch (type) | |
| 511 { | |
| 512 case ResourceType_Patient: | |
| 513 changeType = ChangeType_NewPatient; | |
| 514 break; | |
| 515 | |
| 516 case ResourceType_Study: | |
| 517 changeType = ChangeType_NewStudy; | |
| 518 break; | |
| 519 | |
| 520 case ResourceType_Series: | |
| 521 changeType = ChangeType_NewSeries; | |
| 522 break; | |
| 523 | |
| 524 case ResourceType_Instance: | |
| 525 changeType = ChangeType_NewInstance; | |
| 526 break; | |
| 527 | |
| 528 default: | |
| 529 throw OrthancException(ErrorCode_InternalError); | |
| 530 } | |
| 531 | |
| 532 ServerIndexChange change(changeType, type, publicId); | |
| 533 db_.LogChange(id, change); | |
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534 |
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535 assert(listener_.get() != NULL); |
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536 listener_->SignalChange(change); |
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537 |
| 1299 | 538 return id; |
| 539 } | |
| 540 | |
| 1286 | 541 |
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542 ServerIndex::ServerIndex(ServerContext& context, |
| 1247 | 543 IDatabaseWrapper& db) : |
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544 done_(false), |
| 1247 | 545 db_(db), |
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546 maximumStorageSize_(0), |
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547 maximumPatients_(0) |
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548 { |
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549 listener_.reset(new Listener(context)); |
| 1247 | 550 db_.SetListener(*listener_); |
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551 |
| 1247 | 552 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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553 |
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554 // Initial recycling if the parameters have changed since the last |
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555 // execution of Orthanc |
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556 StandaloneRecycling(); |
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557 |
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558 if (db.HasFlushToDisk()) |
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559 { |
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560 flushThread_ = boost::thread(FlushThread, this); |
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561 } |
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562 |
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563 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
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564 } |
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565 |
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566 |
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567 |
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568 ServerIndex::~ServerIndex() |
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569 { |
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570 if (!done_) |
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571 { |
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572 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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573 Stop(); |
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574 } |
| 0 | 575 } |
| 576 | |
| 577 | |
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578 |
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579 void ServerIndex::Stop() |
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580 { |
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581 if (!done_) |
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582 { |
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583 done_ = true; |
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584 |
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585 if (db_.HasFlushToDisk() && |
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586 flushThread_.joinable()) |
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587 { |
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588 flushThread_.join(); |
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589 } |
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590 |
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591 if (unstableResourcesMonitorThread_.joinable()) |
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592 { |
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593 unstableResourcesMonitorThread_.join(); |
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594 } |
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595 } |
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596 } |
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597 |
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598 |
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599 |
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600 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
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601 const DicomMap& dicomSummary, |
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602 const Attachments& attachments, |
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603 const std::string& remoteAet, |
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604 const MetadataMap& metadata) |
| 0 | 605 { |
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606 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 607 |
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608 instanceMetadata.clear(); |
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609 |
| 178 | 610 DicomInstanceHasher hasher(dicomSummary); |
| 0 | 611 |
| 612 try | |
| 613 { | |
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614 Transaction t(*this); |
| 0 | 615 |
| 202 | 616 // Do nothing if the instance already exists |
| 0 | 617 { |
| 432 | 618 ResourceType type; |
| 619 int64_t tmp; | |
| 1294 | 620 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
| 432 | 621 { |
| 622 assert(type == ResourceType_Instance); | |
| 1247 | 623 db_.GetAllMetadata(instanceMetadata, tmp); |
| 432 | 624 return StoreStatus_AlreadyStored; |
| 625 } | |
| 0 | 626 } |
| 627 | |
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628 // Ensure there is enough room in the storage for the new instance |
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629 uint64_t instanceSize = 0; |
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630 for (Attachments::const_iterator it = attachments.begin(); |
| 656 | 631 it != attachments.end(); ++it) |
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632 { |
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633 instanceSize += it->GetCompressedSize(); |
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634 } |
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635 |
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636 Recycle(instanceSize, hasher.HashPatient()); |
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637 |
| 202 | 638 // Create the instance |
| 1299 | 639 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
| 202 | 640 |
| 641 DicomMap dicom; | |
| 642 dicomSummary.ExtractInstanceInformation(dicom); | |
| 1286 | 643 SetMainDicomTags(instance, dicom); |
| 202 | 644 |
| 432 | 645 // Detect up to which level the patient/study/series/instance |
| 646 // hierarchy must be created | |
| 647 int64_t patient = -1, study = -1, series = -1; | |
| 648 bool isNewPatient = false; | |
| 649 bool isNewStudy = false; | |
| 650 bool isNewSeries = false; | |
| 651 | |
| 0 | 652 { |
| 432 | 653 ResourceType dummy; |
| 654 | |
| 1294 | 655 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
| 432 | 656 { |
| 657 assert(dummy == ResourceType_Series); | |
| 658 // The patient, the study and the series already exist | |
| 659 | |
| 1294 | 660 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
| 661 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
| 432 | 662 assert(ok); |
| 663 } | |
| 1294 | 664 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
| 432 | 665 { |
| 666 assert(dummy == ResourceType_Study); | |
| 667 | |
| 668 // New series: The patient and the study already exist | |
| 669 isNewSeries = true; | |
| 670 | |
| 1294 | 671 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
| 432 | 672 assert(ok); |
| 673 } | |
| 1294 | 674 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
| 432 | 675 { |
| 676 assert(dummy == ResourceType_Patient); | |
| 677 | |
| 678 // New study and series: The patient already exist | |
| 679 isNewStudy = true; | |
| 680 isNewSeries = true; | |
| 681 } | |
| 682 else | |
| 683 { | |
| 684 // New patient, study and series: Nothing exists | |
| 685 isNewPatient = true; | |
| 686 isNewStudy = true; | |
| 687 isNewSeries = true; | |
| 688 } | |
| 689 } | |
| 690 | |
| 691 // Create the series if needed | |
| 692 if (isNewSeries) | |
| 693 { | |
| 1299 | 694 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
| 202 | 695 dicomSummary.ExtractSeriesInformation(dicom); |
| 1286 | 696 SetMainDicomTags(series, dicom); |
| 432 | 697 } |
| 202 | 698 |
| 432 | 699 // Create the study if needed |
| 700 if (isNewStudy) | |
| 701 { | |
| 1299 | 702 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
| 432 | 703 dicomSummary.ExtractStudyInformation(dicom); |
| 1286 | 704 SetMainDicomTags(study, dicom); |
| 432 | 705 } |
| 706 | |
| 707 // Create the patient if needed | |
| 708 if (isNewPatient) | |
| 709 { | |
| 1299 | 710 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
| 432 | 711 dicomSummary.ExtractPatientInformation(dicom); |
| 1286 | 712 SetMainDicomTags(patient, dicom); |
| 432 | 713 } |
| 202 | 714 |
| 432 | 715 // Create the parent-to-child links |
| 1247 | 716 db_.AttachChild(series, instance); |
| 432 | 717 |
| 718 if (isNewSeries) | |
| 719 { | |
| 1247 | 720 db_.AttachChild(study, series); |
| 0 | 721 } |
| 432 | 722 |
| 723 if (isNewStudy) | |
| 0 | 724 { |
| 1247 | 725 db_.AttachChild(patient, study); |
| 0 | 726 } |
| 727 | |
| 432 | 728 // Sanity checks |
| 729 assert(patient != -1); | |
| 730 assert(study != -1); | |
| 731 assert(series != -1); | |
| 732 assert(instance != -1); | |
| 733 | |
| 202 | 734 // Attach the files to the newly created instance |
|
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735 for (Attachments::const_iterator it = attachments.begin(); |
| 656 | 736 it != attachments.end(); ++it) |
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737 { |
| 1247 | 738 db_.AddAttachment(instance, *it); |
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739 } |
| 202 | 740 |
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741 // Attach the user-specified metadata |
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742 for (MetadataMap::const_iterator |
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743 it = metadata.begin(); it != metadata.end(); ++it) |
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744 { |
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745 switch (it->first.first) |
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746 { |
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747 case ResourceType_Patient: |
| 1247 | 748 db_.SetMetadata(patient, it->first.second, it->second); |
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749 break; |
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750 |
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|
751 case ResourceType_Study: |
| 1247 | 752 db_.SetMetadata(study, it->first.second, it->second); |
|
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753 break; |
|
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754 |
|
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755 case ResourceType_Series: |
| 1247 | 756 db_.SetMetadata(series, it->first.second, it->second); |
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757 break; |
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758 |
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759 case ResourceType_Instance: |
| 1247 | 760 db_.SetMetadata(instance, it->first.second, it->second); |
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761 instanceMetadata[it->first.second] = it->second; |
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762 break; |
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763 |
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764 default: |
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765 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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766 } |
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767 } |
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768 |
|
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769 // Attach the auto-computed metadata for the patient/study/series levels |
| 432 | 770 std::string now = Toolbox::GetNowIsoString(); |
| 1247 | 771 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
| 772 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
| 773 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
|
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774 |
|
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775 // Attach the auto-computed metadata for the instance level, |
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776 // reflecting these additions into the input metadata map |
| 1247 | 777 db_.SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); |
|
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778 instanceMetadata[MetadataType_Instance_ReceptionDate] = now; |
| 202 | 779 |
| 1247 | 780 db_.SetMetadata(instance, MetadataType_Instance_RemoteAet, remoteAet); |
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781 instanceMetadata[MetadataType_Instance_RemoteAet] = remoteAet; |
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782 |
| 202 | 783 const DicomValue* value; |
| 784 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
| 785 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
| 0 | 786 { |
| 1247 | 787 db_.SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->AsString()); |
|
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788 instanceMetadata[MetadataType_Instance_IndexInSeries] = value->AsString(); |
| 0 | 789 } |
| 790 | |
|
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791 // Check whether the series of this new instance is now completed |
| 202 | 792 if (isNewSeries) |
| 793 { | |
| 1247 | 794 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
| 202 | 795 } |
| 796 | |
|
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797 SeriesStatus seriesStatus = GetSeriesStatus(series); |
|
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798 if (seriesStatus == SeriesStatus_Complete) |
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799 { |
| 1237 | 800 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
|
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801 } |
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802 |
|
511
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803 // Mark the parent resources of this instance as unstable |
|
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804 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
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805 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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806 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
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807 |
|
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808 t.Commit(instanceSize); |
|
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809 |
| 0 | 810 return StoreStatus_Success; |
| 811 } | |
| 62 | 812 catch (OrthancException& e) |
| 0 | 813 { |
| 1247 | 814 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
| 0 | 815 } |
| 816 | |
| 817 return StoreStatus_Failure; | |
| 818 } | |
| 819 | |
| 820 | |
| 238 | 821 void ServerIndex::ComputeStatistics(Json::Value& target) |
| 0 | 822 { |
|
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823 boost::mutex::scoped_lock lock(mutex_); |
| 238 | 824 target = Json::objectValue; |
| 0 | 825 |
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|
826 uint64_t cs = currentStorageSize_; |
| 1247 | 827 assert(cs == db_.GetTotalCompressedSize()); |
| 828 uint64_t us = db_.GetTotalUncompressedSize(); | |
|
440
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statistics for patient/studies/series/instances
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diff
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|
829 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
| 238 | 830 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
|
1310
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diff
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|
831 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
|
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diff
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|
832 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
| 238 | 833 |
| 1247 | 834 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
| 835 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
| 836 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
| 837 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
| 238 | 838 } |
| 839 | |
|
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|
840 |
|
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|
841 |
| 585 | 842 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
| 199 | 843 { |
| 844 // Get the expected number of instances in this series (from the metadata) | |
| 1238 | 845 int64_t expected; |
| 846 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
| 199 | 847 { |
| 848 return SeriesStatus_Unknown; | |
| 849 } | |
| 850 | |
| 851 // Loop over the instances of this series | |
| 852 std::list<int64_t> children; | |
| 1247 | 853 db_.GetChildrenInternalId(children, id); |
| 199 | 854 |
| 1238 | 855 std::set<int64_t> instances; |
| 199 | 856 for (std::list<int64_t>::const_iterator |
| 656 | 857 it = children.begin(); it != children.end(); ++it) |
| 199 | 858 { |
| 859 // Get the index of this instance in the series | |
| 1238 | 860 int64_t index; |
| 861 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
| 199 | 862 { |
| 863 return SeriesStatus_Unknown; | |
| 864 } | |
| 865 | |
| 656 | 866 if (!(index > 0 && index <= expected)) |
| 199 | 867 { |
| 868 // Out-of-range instance index | |
| 869 return SeriesStatus_Inconsistent; | |
| 870 } | |
| 871 | |
| 872 if (instances.find(index) != instances.end()) | |
| 873 { | |
| 874 // Twice the same instance index | |
| 875 return SeriesStatus_Inconsistent; | |
| 876 } | |
| 877 | |
| 878 instances.insert(index); | |
| 879 } | |
| 880 | |
| 1238 | 881 if (static_cast<int64_t>(instances.size()) == expected) |
| 199 | 882 { |
| 883 return SeriesStatus_Complete; | |
| 884 } | |
| 885 else | |
| 886 { | |
| 887 return SeriesStatus_Missing; | |
| 888 } | |
| 889 } | |
| 890 | |
| 891 | |
| 892 | |
| 202 | 893 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
| 894 int64_t resourceId) | |
|
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|
895 { |
|
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|
896 DicomMap tags; |
| 1247 | 897 db_.GetMainDicomTags(tags, resourceId); |
|
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|
898 target["MainDicomTags"] = Json::objectValue; |
| 1368 | 899 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
|
198
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|
900 } |
|
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|
901 |
|
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diff
changeset
|
902 bool ServerIndex::LookupResource(Json::Value& result, |
| 199 | 903 const std::string& publicId, |
| 904 ResourceType expectedType) | |
|
198
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|
905 { |
|
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|
906 result = Json::objectValue; |
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|
907 |
|
206
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|
908 boost::mutex::scoped_lock lock(mutex_); |
| 199 | 909 |
|
198
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|
910 // Lookup for the requested resource |
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|
911 int64_t id; |
|
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|
912 ResourceType type; |
| 1294 | 913 if (!db_.LookupResource(id, type, publicId) || |
| 199 | 914 type != expectedType) |
|
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915 { |
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|
916 return false; |
|
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|
917 } |
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|
918 |
|
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|
919 // Find the parent resource (if it exists) |
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|
920 if (type != ResourceType_Patient) |
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|
921 { |
|
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|
922 int64_t parentId; |
| 1247 | 923 if (!db_.LookupParent(parentId, id)) |
|
198
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|
924 { |
|
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|
925 throw OrthancException(ErrorCode_InternalError); |
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|
926 } |
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|
927 |
| 1247 | 928 std::string parent = db_.GetPublicId(parentId); |
|
198
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|
929 |
|
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|
930 switch (type) |
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|
931 { |
|
269
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|
932 case ResourceType_Study: |
|
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|
933 result["ParentPatient"] = parent; |
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|
934 break; |
|
198
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|
935 |
|
269
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|
936 case ResourceType_Series: |
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|
937 result["ParentStudy"] = parent; |
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|
938 break; |
|
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|
939 |
|
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|
940 case ResourceType_Instance: |
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|
941 result["ParentSeries"] = parent; |
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|
942 break; |
|
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|
943 |
|
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|
944 default: |
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|
945 throw OrthancException(ErrorCode_InternalError); |
|
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946 } |
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947 } |
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948 |
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changeset
|
949 // List the children resources |
|
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950 std::list<std::string> children; |
| 1247 | 951 db_.GetChildrenPublicId(children, id); |
|
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952 |
|
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953 if (type != ResourceType_Instance) |
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954 { |
|
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|
955 Json::Value c = Json::arrayValue; |
|
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956 |
|
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|
957 for (std::list<std::string>::const_iterator |
| 656 | 958 it = children.begin(); it != children.end(); ++it) |
|
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959 { |
|
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960 c.append(*it); |
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961 } |
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|
962 |
|
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|
963 switch (type) |
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|
964 { |
|
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|
965 case ResourceType_Patient: |
|
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|
966 result["Studies"] = c; |
|
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|
967 break; |
|
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|
968 |
|
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|
969 case ResourceType_Study: |
|
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970 result["Series"] = c; |
|
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971 break; |
|
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|
972 |
|
269
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|
973 case ResourceType_Series: |
|
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974 result["Instances"] = c; |
|
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|
975 break; |
|
198
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|
976 |
|
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|
977 default: |
|
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|
978 throw OrthancException(ErrorCode_InternalError); |
|
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979 } |
|
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|
980 } |
|
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|
981 |
|
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|
982 // Set the resource type |
|
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|
983 switch (type) |
|
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|
984 { |
|
269
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|
985 case ResourceType_Patient: |
|
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|
986 result["Type"] = "Patient"; |
|
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|
987 break; |
|
198
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|
988 |
|
269
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|
989 case ResourceType_Study: |
|
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|
990 result["Type"] = "Study"; |
|
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|
991 break; |
| 199 | 992 |
|
269
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|
993 case ResourceType_Series: |
|
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|
994 { |
|
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|
995 result["Type"] = "Series"; |
|
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
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433
diff
changeset
|
996 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
|
198
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|
997 |
| 1238 | 998 int64_t i; |
| 1237 | 999 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
| 1238 | 1000 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
|
269
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|
1001 else |
|
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diff
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|
1002 result["ExpectedNumberOfInstances"] = Json::nullValue; |
|
200
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refactoring of read operations
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diff
changeset
|
1003 |
|
269
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diff
changeset
|
1004 break; |
|
200
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diff
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|
1005 } |
|
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refactoring of read operations
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diff
changeset
|
1006 |
|
269
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diff
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|
1007 case ResourceType_Instance: |
|
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changeset
|
1008 { |
|
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|
1009 result["Type"] = "Instance"; |
|
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|
1010 |
|
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changeset
|
1011 FileInfo attachment; |
| 1247 | 1012 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
|
269
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|
1013 { |
|
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|
1014 throw OrthancException(ErrorCode_InternalError); |
|
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268
diff
changeset
|
1015 } |
|
200
9c58b2b03cf0
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diff
changeset
|
1016 |
|
269
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|
1017 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
|
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|
1018 result["FileUuid"] = attachment.GetUuid(); |
|
200
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199
diff
changeset
|
1019 |
| 1238 | 1020 int64_t i; |
| 1237 | 1021 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
| 1238 | 1022 result["IndexInSeries"] = static_cast<int>(i); |
|
269
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diff
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|
1023 else |
|
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|
1024 result["IndexInSeries"] = Json::nullValue; |
|
198
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diff
changeset
|
1025 |
|
269
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diff
changeset
|
1026 break; |
|
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diff
changeset
|
1027 } |
|
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changeset
|
1028 |
|
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diff
changeset
|
1029 default: |
|
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diff
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|
1030 throw OrthancException(ErrorCode_InternalError); |
|
198
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|
1031 } |
|
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|
1032 |
|
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|
1033 // Record the remaining information |
|
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diff
changeset
|
1034 result["ID"] = publicId; |
| 202 | 1035 MainDicomTagsToJson(result, id); |
|
198
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|
1036 |
| 315 | 1037 std::string tmp; |
| 1038 | |
| 1247 | 1039 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
| 1236 | 1040 { |
| 315 | 1041 result["AnonymizedFrom"] = tmp; |
| 1236 | 1042 } |
| 315 | 1043 |
| 1247 | 1044 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
| 1236 | 1045 { |
| 315 | 1046 result["ModifiedFrom"] = tmp; |
| 1236 | 1047 } |
| 315 | 1048 |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1049 if (type == ResourceType_Patient || |
|
3b735fdf320b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1050 type == ResourceType_Study || |
|
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
1051 type == ResourceType_Series) |
|
3b735fdf320b
monitoring of stable patients/studies/series
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440
diff
changeset
|
1052 { |
|
3b735fdf320b
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parents:
440
diff
changeset
|
1053 result["IsStable"] = !unstableResources_.Contains(id); |
|
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1054 |
| 1247 | 1055 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
| 1236 | 1056 { |
|
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1057 result["LastUpdate"] = tmp; |
| 1236 | 1058 } |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
1059 } |
|
3b735fdf320b
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diff
changeset
|
1060 |
|
198
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|
1061 return true; |
|
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changeset
|
1062 } |
|
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changeset
|
1063 |
| 0 | 1064 |
|
232
5368bbe813cf
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diff
changeset
|
1065 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
|
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231
diff
changeset
|
1066 const std::string& instanceUuid, |
| 233 | 1067 FileContentType contentType) |
| 0 | 1068 { |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
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205
diff
changeset
|
1069 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 1070 |
|
193
a1b9d1e1497b
failed attempt to compile with linux standard base
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parents:
192
diff
changeset
|
1071 int64_t id; |
|
a1b9d1e1497b
failed attempt to compile with linux standard base
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parents:
192
diff
changeset
|
1072 ResourceType type; |
| 1294 | 1073 if (!db_.LookupResource(id, type, instanceUuid)) |
|
192
c56dc32266e0
refactoring getfile
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parents:
191
diff
changeset
|
1074 { |
|
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1075 throw OrthancException(ErrorCode_UnknownResource); |
|
192
c56dc32266e0
refactoring getfile
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191
diff
changeset
|
1076 } |
|
193
a1b9d1e1497b
failed attempt to compile with linux standard base
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192
diff
changeset
|
1077 |
| 1247 | 1078 if (db_.LookupAttachment(attachment, id, contentType)) |
|
232
5368bbe813cf
refactoring of attachments
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parents:
231
diff
changeset
|
1079 { |
| 233 | 1080 assert(attachment.GetContentType() == contentType); |
|
232
5368bbe813cf
refactoring of attachments
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parents:
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diff
changeset
|
1081 return true; |
|
5368bbe813cf
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231
diff
changeset
|
1082 } |
|
5368bbe813cf
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parents:
231
diff
changeset
|
1083 else |
|
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1084 { |
|
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1085 return false; |
|
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1086 } |
|
192
c56dc32266e0
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parents:
191
diff
changeset
|
1087 } |
|
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1088 |
|
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1089 |
|
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1090 |
| 1354 | 1091 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
| 190 | 1092 ResourceType resourceType) |
| 0 | 1093 { |
| 1357 | 1094 boost::mutex::scoped_lock lock(mutex_); |
| 1095 db_.GetAllPublicIds(target, resourceType); | |
| 0 | 1096 } |
| 1097 | |
| 1098 | |
| 1244 | 1099 template <typename T> |
| 1100 static void FormatLog(Json::Value& target, | |
| 1101 const std::list<T>& log, | |
| 1102 const std::string& name, | |
| 1103 bool done, | |
| 1104 int64_t since) | |
| 1240 | 1105 { |
| 1106 Json::Value items = Json::arrayValue; | |
| 1244 | 1107 for (typename std::list<T>::const_iterator |
| 1304 | 1108 it = log.begin(); it != log.end(); ++it) |
| 1240 | 1109 { |
| 1110 Json::Value item; | |
| 1111 it->Format(item); | |
| 1112 items.append(item); | |
| 1113 } | |
| 1114 | |
| 1115 target = Json::objectValue; | |
| 1244 | 1116 target[name] = items; |
| 1240 | 1117 target["Done"] = done; |
| 1118 | |
| 1305 | 1119 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
| 1240 | 1120 target["Last"] = static_cast<int>(last); |
| 1121 } | |
| 1122 | |
| 1123 | |
| 1247 | 1124 void ServerIndex::GetChanges(Json::Value& target, |
| 204 | 1125 int64_t since, |
| 0 | 1126 unsigned int maxResults) |
| 1127 { | |
| 1240 | 1128 std::list<ServerIndexChange> changes; |
| 1129 bool done; | |
| 1130 | |
| 1131 { | |
| 1132 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1133 db_.GetChanges(changes, done, since, maxResults); |
| 1240 | 1134 } |
| 1135 | |
| 1244 | 1136 FormatLog(target, changes, "Changes", done, since); |
|
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1137 } |
| 0 | 1138 |
| 1240 | 1139 |
| 1247 | 1140 void ServerIndex::GetLastChange(Json::Value& target) |
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1141 { |
| 1240 | 1142 std::list<ServerIndexChange> changes; |
| 1143 | |
| 1144 { | |
| 1145 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1146 db_.GetLastChange(changes); |
| 1240 | 1147 } |
| 1148 | |
| 1244 | 1149 FormatLog(target, changes, "Changes", true, 0); |
| 0 | 1150 } |
| 231 | 1151 |
| 1240 | 1152 |
| 231 | 1153 void ServerIndex::LogExportedResource(const std::string& publicId, |
| 1154 const std::string& remoteModality) | |
| 1155 { | |
| 1156 boost::mutex::scoped_lock lock(mutex_); | |
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1157 Transaction transaction(*this); |
| 231 | 1158 |
| 1159 int64_t id; | |
| 1160 ResourceType type; | |
| 1294 | 1161 if (!db_.LookupResource(id, type, publicId)) |
| 231 | 1162 { |
| 1163 throw OrthancException(ErrorCode_InternalError); | |
| 1164 } | |
| 1165 | |
| 1166 std::string patientId; | |
| 1167 std::string studyInstanceUid; | |
| 1168 std::string seriesInstanceUid; | |
| 1169 std::string sopInstanceUid; | |
| 1170 | |
| 1171 int64_t currentId = id; | |
| 1172 ResourceType currentType = type; | |
| 1173 | |
| 1174 // Iteratively go up inside the patient/study/series/instance hierarchy | |
| 1175 bool done = false; | |
| 1176 while (!done) | |
| 1177 { | |
| 1178 DicomMap map; | |
| 1247 | 1179 db_.GetMainDicomTags(map, currentId); |
| 231 | 1180 |
| 1181 switch (currentType) | |
| 1182 { | |
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1183 case ResourceType_Patient: |
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1184 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).AsString(); |
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1185 done = true; |
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1186 break; |
| 231 | 1187 |
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1188 case ResourceType_Study: |
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1189 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString(); |
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1190 currentType = ResourceType_Patient; |
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1191 break; |
| 231 | 1192 |
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1193 case ResourceType_Series: |
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1194 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString(); |
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1195 currentType = ResourceType_Study; |
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1196 break; |
| 231 | 1197 |
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1198 case ResourceType_Instance: |
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1199 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).AsString(); |
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1200 currentType = ResourceType_Series; |
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1201 break; |
| 231 | 1202 |
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1203 default: |
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1204 throw OrthancException(ErrorCode_InternalError); |
| 231 | 1205 } |
| 1206 | |
| 1207 // If we have not reached the Patient level, find the parent of | |
| 1208 // the current resource | |
| 1209 if (!done) | |
| 1210 { | |
| 1247 | 1211 bool ok = db_.LookupParent(currentId, currentId); |
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1212 assert(ok); |
| 231 | 1213 } |
| 1214 } | |
| 1215 | |
| 1246 | 1216 ExportedResource resource(-1, |
| 1217 type, | |
| 1218 publicId, | |
| 1219 remoteModality, | |
| 1220 Toolbox::GetNowIsoString(), | |
| 1221 patientId, | |
| 1222 studyInstanceUid, | |
| 1223 seriesInstanceUid, | |
| 1224 sopInstanceUid); | |
|
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1225 |
| 1247 | 1226 db_.LogExportedResource(resource); |
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1227 transaction.Commit(0); |
| 231 | 1228 } |
| 1229 | |
| 1230 | |
| 1247 | 1231 void ServerIndex::GetExportedResources(Json::Value& target, |
| 231 | 1232 int64_t since, |
| 1233 unsigned int maxResults) | |
| 1234 { | |
| 1244 | 1235 std::list<ExportedResource> exported; |
| 1236 bool done; | |
| 1237 | |
| 1238 { | |
| 1239 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1240 db_.GetExportedResources(exported, done, since, maxResults); |
| 1244 | 1241 } |
| 1242 | |
| 1243 FormatLog(target, exported, "Exports", done, since); | |
| 231 | 1244 } |
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1245 |
| 1244 | 1246 |
| 1247 | 1247 void ServerIndex::GetLastExportedResource(Json::Value& target) |
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1248 { |
| 1244 | 1249 std::list<ExportedResource> exported; |
| 1250 | |
| 1251 { | |
| 1252 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1253 db_.GetLastExportedResource(exported); |
| 1244 | 1254 } |
| 1255 | |
| 1256 FormatLog(target, exported, "Exports", true, 0); | |
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1257 } |
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1258 |
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1259 |
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1260 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1261 { |
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1262 if (maximumStorageSize_ != 0) |
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1263 { |
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1264 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
| 1247 | 1265 assert(db_.GetTotalCompressedSize() == currentSize); |
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1266 |
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1267 if (currentSize + instanceSize > maximumStorageSize_) |
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1268 { |
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1269 return true; |
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1270 } |
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1271 } |
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1272 |
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1273 if (maximumPatients_ != 0) |
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1274 { |
| 1247 | 1275 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1276 if (patientCount > maximumPatients_) |
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1277 { |
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1278 return true; |
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1279 } |
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1280 } |
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1281 |
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1282 return false; |
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1283 } |
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1284 |
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1285 |
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1286 void ServerIndex::Recycle(uint64_t instanceSize, |
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1287 const std::string& newPatientId) |
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1288 { |
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1289 if (!IsRecyclingNeeded(instanceSize)) |
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1290 { |
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1291 return; |
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1292 } |
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1293 |
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1294 // Check whether other DICOM instances from this patient are |
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1295 // already stored |
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1296 int64_t patientToAvoid; |
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1297 ResourceType type; |
| 1294 | 1298 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1299 |
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1300 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1301 { |
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1302 throw OrthancException(ErrorCode_InternalError); |
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1303 } |
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1304 |
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1305 // Iteratively select patient to remove until there is enough |
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1306 // space in the DICOM store |
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1307 int64_t patientToRecycle; |
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1308 while (true) |
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1309 { |
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1310 // If other instances of this patient are already in the store, |
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1311 // we must avoid to recycle them |
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1312 bool ok = hasPatientToAvoid ? |
| 1247 | 1313 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
| 1314 db_.SelectPatientToRecycle(patientToRecycle); | |
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1315 |
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1316 if (!ok) |
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1317 { |
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1318 throw OrthancException(ErrorCode_FullStorage); |
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1319 } |
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1320 |
|
1331
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1321 VLOG(1) << "Recycling one patient"; |
| 1247 | 1322 db_.DeleteResource(patientToRecycle); |
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1323 |
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1324 if (!IsRecyclingNeeded(instanceSize)) |
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1325 { |
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1326 // OK, we're done |
|
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1327 break; |
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1328 } |
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1329 } |
|
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1330 } |
|
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1331 |
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1332 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1333 { |
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1334 boost::mutex::scoped_lock lock(mutex_); |
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1335 maximumPatients_ = count; |
|
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1336 |
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1337 if (count == 0) |
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1338 { |
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1339 LOG(WARNING) << "No limit on the number of stored patients"; |
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1340 } |
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1341 else |
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1342 { |
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1343 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1344 } |
|
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1345 |
|
269
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1346 StandaloneRecycling(); |
|
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1347 } |
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1348 |
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1349 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1350 { |
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1351 boost::mutex::scoped_lock lock(mutex_); |
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|
1352 maximumStorageSize_ = size; |
|
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1353 |
|
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1354 if (size == 0) |
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1355 { |
|
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|
1356 LOG(WARNING) << "No limit on the size of the storage area"; |
|
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1357 } |
|
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|
1358 else |
|
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|
1359 { |
|
440
23e5b35e3c5c
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|
1360 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
|
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1361 } |
|
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|
1362 |
|
269
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1363 StandaloneRecycling(); |
|
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1364 } |
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1365 |
|
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1366 void ServerIndex::StandaloneRecycling() |
|
269
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1367 { |
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1368 // WARNING: No mutex here, do not include this as a public method |
|
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1369 Transaction t(*this); |
|
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1370 Recycle(0, ""); |
|
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1371 t.Commit(0); |
|
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1372 } |
|
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|
1373 |
|
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|
1374 |
|
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|
1375 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
|
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|
1376 { |
|
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|
1377 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1378 |
|
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1379 // Lookup for the requested resource |
|
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1380 int64_t id; |
|
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|
1381 ResourceType type; |
| 1294 | 1382 if (!db_.LookupResource(id, type, publicId) || |
|
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1383 type != ResourceType_Patient) |
|
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|
1384 { |
|
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1385 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1386 } |
|
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1387 |
| 1247 | 1388 return db_.IsProtectedPatient(id); |
|
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1389 } |
|
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|
1390 |
|
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|
1391 |
|
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|
1392 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
|
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|
1393 bool isProtected) |
|
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|
1394 { |
|
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|
1395 boost::mutex::scoped_lock lock(mutex_); |
|
1310
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|
1396 Transaction transaction(*this); |
|
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|
1397 |
|
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1398 // Lookup for the requested resource |
|
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|
1399 int64_t id; |
|
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|
1400 ResourceType type; |
| 1294 | 1401 if (!db_.LookupResource(id, type, publicId) || |
|
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1402 type != ResourceType_Patient) |
|
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|
1403 { |
|
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|
1404 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1405 } |
|
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1406 |
| 1247 | 1407 db_.SetProtectedPatient(id, isProtected); |
|
1310
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|
1408 transaction.Commit(0); |
|
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1409 |
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1410 if (isProtected) |
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1411 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1412 else |
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1413 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1414 } |
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1415 |
| 304 | 1416 |
|
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|
1417 void ServerIndex::GetChildren(std::list<std::string>& result, |
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|
1418 const std::string& publicId) |
|
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1419 { |
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|
1420 result.clear(); |
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1421 |
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|
1422 boost::mutex::scoped_lock lock(mutex_); |
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1423 |
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|
1424 ResourceType type; |
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|
1425 int64_t resource; |
| 1294 | 1426 if (!db_.LookupResource(resource, type, publicId)) |
|
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1427 { |
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|
1428 throw OrthancException(ErrorCode_UnknownResource); |
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1429 } |
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1430 |
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|
1431 if (type == ResourceType_Instance) |
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|
1432 { |
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|
1433 // An instance cannot have a child |
|
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|
1434 throw OrthancException(ErrorCode_BadParameterType); |
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1435 } |
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|
1436 |
|
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|
1437 std::list<int64_t> tmp; |
| 1247 | 1438 db_.GetChildrenInternalId(tmp, resource); |
|
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|
1439 |
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|
1440 for (std::list<int64_t>::const_iterator |
|
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|
1441 it = tmp.begin(); it != tmp.end(); ++it) |
|
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|
1442 { |
| 1247 | 1443 result.push_back(db_.GetPublicId(*it)); |
|
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|
1444 } |
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1445 } |
|
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1446 |
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1447 |
| 304 | 1448 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
| 1449 const std::string& publicId) | |
| 1450 { | |
| 1451 result.clear(); | |
| 1452 | |
| 1453 boost::mutex::scoped_lock lock(mutex_); | |
| 1454 | |
| 1455 ResourceType type; | |
| 1456 int64_t top; | |
| 1294 | 1457 if (!db_.LookupResource(top, type, publicId)) |
| 304 | 1458 { |
| 1459 throw OrthancException(ErrorCode_UnknownResource); | |
| 1460 } | |
| 1461 | |
| 1462 if (type == ResourceType_Instance) | |
| 1463 { | |
| 1464 // The resource is already an instance: Do not go down the hierarchy | |
| 1465 result.push_back(publicId); | |
| 1466 return; | |
| 1467 } | |
| 1468 | |
| 1469 std::stack<int64_t> toExplore; | |
| 1470 toExplore.push(top); | |
| 1471 | |
| 1472 std::list<int64_t> tmp; | |
| 1473 | |
| 1474 while (!toExplore.empty()) | |
| 1475 { | |
| 1476 // Get the internal ID of the current resource | |
| 1477 int64_t resource = toExplore.top(); | |
| 1478 toExplore.pop(); | |
| 1479 | |
| 1247 | 1480 if (db_.GetResourceType(resource) == ResourceType_Instance) |
| 304 | 1481 { |
| 1247 | 1482 result.push_back(db_.GetPublicId(resource)); |
| 304 | 1483 } |
| 1484 else | |
| 1485 { | |
| 1486 // Tag all the children of this resource as to be explored | |
| 1247 | 1487 db_.GetChildrenInternalId(tmp, resource); |
| 304 | 1488 for (std::list<int64_t>::const_iterator |
| 656 | 1489 it = tmp.begin(); it != tmp.end(); ++it) |
| 304 | 1490 { |
| 1491 toExplore.push(*it); | |
| 1492 } | |
| 1493 } | |
| 1494 } | |
| 1495 } | |
| 1496 | |
|
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1497 |
|
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1498 void ServerIndex::SetMetadata(const std::string& publicId, |
|
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1499 MetadataType type, |
|
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1500 const std::string& value) |
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1501 { |
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|
1502 boost::mutex::scoped_lock lock(mutex_); |
|
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1503 |
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|
1504 ResourceType rtype; |
|
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|
1505 int64_t id; |
| 1294 | 1506 if (!db_.LookupResource(id, rtype, publicId)) |
|
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1507 { |
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1508 throw OrthancException(ErrorCode_UnknownResource); |
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1509 } |
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1510 |
| 1247 | 1511 db_.SetMetadata(id, type, value); |
|
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1512 } |
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|
1513 |
| 438 | 1514 |
| 1515 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
| 1516 MetadataType type) | |
| 1517 { | |
| 1518 boost::mutex::scoped_lock lock(mutex_); | |
| 1519 | |
| 1520 ResourceType rtype; | |
| 1521 int64_t id; | |
| 1294 | 1522 if (!db_.LookupResource(id, rtype, publicId)) |
| 438 | 1523 { |
| 1524 throw OrthancException(ErrorCode_UnknownResource); | |
| 1525 } | |
| 1526 | |
| 1247 | 1527 db_.DeleteMetadata(id, type); |
| 438 | 1528 } |
| 1529 | |
| 1530 | |
|
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|
1531 bool ServerIndex::LookupMetadata(std::string& target, |
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|
1532 const std::string& publicId, |
|
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|
1533 MetadataType type) |
|
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1534 { |
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|
1535 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1536 |
|
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|
1537 ResourceType rtype; |
|
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|
1538 int64_t id; |
| 1294 | 1539 if (!db_.LookupResource(id, rtype, publicId)) |
|
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1540 { |
|
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|
1541 throw OrthancException(ErrorCode_UnknownResource); |
|
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1542 } |
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1543 |
| 1247 | 1544 return db_.LookupMetadata(target, id, type); |
|
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1545 } |
|
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1546 |
|
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1547 |
| 739 | 1548 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
|
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|
1549 const std::string& publicId) |
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1550 { |
|
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1551 boost::mutex::scoped_lock lock(mutex_); |
|
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1552 |
|
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1553 ResourceType rtype; |
|
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|
1554 int64_t id; |
| 1294 | 1555 if (!db_.LookupResource(id, rtype, publicId)) |
|
436
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1556 { |
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1557 throw OrthancException(ErrorCode_UnknownResource); |
|
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1558 } |
|
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1559 |
| 1247 | 1560 db_.ListAvailableMetadata(target, id); |
|
436
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1561 } |
|
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|
1562 |
|
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1563 |
|
697
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|
1564 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
|
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|
1565 const std::string& publicId, |
|
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|
1566 ResourceType expectedType) |
|
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|
1567 { |
|
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|
1568 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1569 |
|
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|
1570 ResourceType type; |
|
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|
1571 int64_t id; |
| 1294 | 1572 if (!db_.LookupResource(id, type, publicId) || |
|
697
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|
1573 expectedType != type) |
|
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|
1574 { |
|
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|
1575 throw OrthancException(ErrorCode_UnknownResource); |
|
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|
1576 } |
|
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1577 |
| 1247 | 1578 db_.ListAvailableAttachments(target, id); |
|
697
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|
1579 } |
|
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|
1580 |
|
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|
1581 |
|
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1582 bool ServerIndex::LookupParent(std::string& target, |
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1583 const std::string& publicId) |
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1584 { |
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|
1585 boost::mutex::scoped_lock lock(mutex_); |
|
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1586 |
|
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|
1587 ResourceType type; |
|
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1588 int64_t id; |
| 1294 | 1589 if (!db_.LookupResource(id, type, publicId)) |
|
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1590 { |
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|
1591 throw OrthancException(ErrorCode_UnknownResource); |
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1592 } |
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1593 |
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1594 int64_t parentId; |
| 1247 | 1595 if (db_.LookupParent(parentId, id)) |
|
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1596 { |
| 1247 | 1597 target = db_.GetPublicId(parentId); |
|
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1598 return true; |
|
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1599 } |
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|
1600 else |
|
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1601 { |
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1602 return false; |
|
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1603 } |
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1604 } |
| 310 | 1605 |
| 1606 | |
| 1607 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
| 1608 { | |
| 1609 boost::mutex::scoped_lock lock(mutex_); | |
|
1310
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|
1610 Transaction transaction(*this); |
| 311 | 1611 |
| 1237 | 1612 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
|
1310
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|
1613 transaction.Commit(0); |
| 311 | 1614 |
| 1615 return seq; | |
| 310 | 1616 } |
| 315 | 1617 |
| 1618 | |
| 1619 | |
| 1620 void ServerIndex::LogChange(ChangeType changeType, | |
| 1621 const std::string& publicId) | |
| 1622 { | |
| 1623 boost::mutex::scoped_lock lock(mutex_); | |
|
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|
1624 Transaction transaction(*this); |
| 315 | 1625 |
| 1626 int64_t id; | |
| 1627 ResourceType type; | |
| 1294 | 1628 if (!db_.LookupResource(id, type, publicId)) |
| 315 | 1629 { |
| 1630 throw OrthancException(ErrorCode_UnknownResource); | |
| 1631 } | |
| 1632 | |
| 1237 | 1633 LogChange(id, changeType, type, publicId); |
|
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|
1634 transaction.Commit(0); |
| 315 | 1635 } |
|
413
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|
1636 |
|
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1637 |
|
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|
1638 void ServerIndex::DeleteChanges() |
|
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|
1639 { |
|
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|
1640 boost::mutex::scoped_lock lock(mutex_); |
| 1286 | 1641 db_.ClearChanges(); |
|
413
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1642 } |
|
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1643 |
|
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|
1644 void ServerIndex::DeleteExportedResources() |
|
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1645 { |
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|
1646 boost::mutex::scoped_lock lock(mutex_); |
| 1286 | 1647 db_.ClearExportedResources(); |
|
413
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1648 } |
|
440
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1649 |
|
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|
1650 |
| 646 | 1651 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
| 1652 /* out */ uint64_t& uncompressedSize, | |
| 1653 /* out */ unsigned int& countStudies, | |
| 1654 /* out */ unsigned int& countSeries, | |
| 1655 /* out */ unsigned int& countInstances, | |
| 1656 /* in */ int64_t id, | |
| 1657 /* in */ ResourceType type) | |
|
440
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|
1658 { |
| 646 | 1659 std::stack<int64_t> toExplore; |
| 1660 toExplore.push(id); | |
|
440
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diff
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|
1661 |
| 646 | 1662 countInstances = 0; |
| 1663 countSeries = 0; | |
| 1664 countStudies = 0; | |
| 1665 compressedSize = 0; | |
| 1666 uncompressedSize = 0; | |
|
440
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diff
changeset
|
1667 |
|
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diff
changeset
|
1668 while (!toExplore.empty()) |
|
23e5b35e3c5c
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diff
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|
1669 { |
|
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diff
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|
1670 // Get the internal ID of the current resource |
|
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|
1671 int64_t resource = toExplore.top(); |
|
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diff
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|
1672 toExplore.pop(); |
|
23e5b35e3c5c
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diff
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|
1673 |
| 1247 | 1674 ResourceType thisType = db_.GetResourceType(resource); |
|
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diff
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|
1675 |
|
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1676 std::list<FileContentType> f; |
| 1247 | 1677 db_.ListAvailableAttachments(f, resource); |
|
702
7592a48e97e4
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diff
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|
1678 |
|
7592a48e97e4
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diff
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|
1679 for (std::list<FileContentType>::const_iterator |
|
7592a48e97e4
delete custom attachment
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parents:
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diff
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|
1680 it = f.begin(); it != f.end(); ++it) |
|
7592a48e97e4
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diff
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|
1681 { |
|
7592a48e97e4
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diff
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|
1682 FileInfo attachment; |
| 1247 | 1683 if (db_.LookupAttachment(attachment, resource, *it)) |
|
702
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diff
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|
1684 { |
|
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diff
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|
1685 compressedSize += attachment.GetCompressedSize(); |
|
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diff
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|
1686 uncompressedSize += attachment.GetUncompressedSize(); |
|
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diff
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|
1687 } |
|
7592a48e97e4
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parents:
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diff
changeset
|
1688 } |
|
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diff
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|
1689 |
|
440
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diff
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|
1690 if (thisType == ResourceType_Instance) |
|
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diff
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|
1691 { |
|
23e5b35e3c5c
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diff
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|
1692 countInstances++; |
|
23e5b35e3c5c
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diff
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|
1693 } |
|
23e5b35e3c5c
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diff
changeset
|
1694 else |
|
23e5b35e3c5c
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diff
changeset
|
1695 { |
|
23e5b35e3c5c
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diff
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|
1696 switch (thisType) |
|
23e5b35e3c5c
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diff
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|
1697 { |
|
23e5b35e3c5c
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diff
changeset
|
1698 case ResourceType_Study: |
|
23e5b35e3c5c
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diff
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|
1699 countStudies++; |
|
23e5b35e3c5c
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diff
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|
1700 break; |
|
23e5b35e3c5c
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diff
changeset
|
1701 |
|
23e5b35e3c5c
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438
diff
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|
1702 case ResourceType_Series: |
|
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1703 countSeries++; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
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438
diff
changeset
|
1704 break; |
|
23e5b35e3c5c
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438
diff
changeset
|
1705 |
|
23e5b35e3c5c
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diff
changeset
|
1706 default: |
|
23e5b35e3c5c
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diff
changeset
|
1707 break; |
|
23e5b35e3c5c
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438
diff
changeset
|
1708 } |
|
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438
diff
changeset
|
1709 |
|
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diff
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|
1710 // Tag all the children of this resource as to be explored |
|
23e5b35e3c5c
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diff
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|
1711 std::list<int64_t> tmp; |
| 1247 | 1712 db_.GetChildrenInternalId(tmp, resource); |
|
440
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diff
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|
1713 for (std::list<int64_t>::const_iterator |
| 656 | 1714 it = tmp.begin(); it != tmp.end(); ++it) |
|
440
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diff
changeset
|
1715 { |
|
23e5b35e3c5c
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diff
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|
1716 toExplore.push(*it); |
|
23e5b35e3c5c
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parents:
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diff
changeset
|
1717 } |
|
23e5b35e3c5c
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diff
changeset
|
1718 } |
|
23e5b35e3c5c
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diff
changeset
|
1719 } |
|
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diff
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|
1720 |
| 646 | 1721 if (countStudies == 0) |
| 1722 { | |
| 1723 countStudies = 1; | |
| 1724 } | |
| 1725 | |
| 1726 if (countSeries == 0) | |
| 1727 { | |
| 1728 countSeries = 1; | |
| 1729 } | |
| 1730 } | |
| 1731 | |
| 1732 | |
| 1733 | |
| 1734 void ServerIndex::GetStatistics(Json::Value& target, | |
| 1735 const std::string& publicId) | |
| 1736 { | |
| 1737 boost::mutex::scoped_lock lock(mutex_); | |
| 1738 | |
| 1739 ResourceType type; | |
| 1740 int64_t top; | |
| 1294 | 1741 if (!db_.LookupResource(top, type, publicId)) |
| 646 | 1742 { |
| 1743 throw OrthancException(ErrorCode_UnknownResource); | |
| 1744 } | |
| 1745 | |
| 1746 uint64_t uncompressedSize; | |
| 1747 uint64_t compressedSize; | |
| 1748 unsigned int countStudies; | |
| 1749 unsigned int countSeries; | |
| 1750 unsigned int countInstances; | |
| 1751 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
| 1752 countSeries, countInstances, top, type); | |
| 1753 | |
|
440
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diff
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|
1754 target = Json::objectValue; |
|
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|
1755 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
|
1310
61ce8147f30d
custom database back-end
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diff
changeset
|
1756 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
|
440
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diff
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|
1757 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
|
1310
61ce8147f30d
custom database back-end
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1306
diff
changeset
|
1758 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
|
440
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diff
changeset
|
1759 |
|
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diff
changeset
|
1760 switch (type) |
|
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diff
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|
1761 { |
|
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diff
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|
1762 // Do NOT add "break" below this point! |
|
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diff
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|
1763 case ResourceType_Patient: |
|
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|
1764 target["CountStudies"] = countStudies; |
|
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diff
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|
1765 |
|
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diff
changeset
|
1766 case ResourceType_Study: |
|
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diff
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|
1767 target["CountSeries"] = countSeries; |
|
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diff
changeset
|
1768 |
|
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diff
changeset
|
1769 case ResourceType_Series: |
|
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|
1770 target["CountInstances"] = countInstances; |
|
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changeset
|
1771 |
|
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diff
changeset
|
1772 case ResourceType_Instance: |
|
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diff
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|
1773 default: |
|
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diff
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|
1774 break; |
|
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diff
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|
1775 } |
|
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diff
changeset
|
1776 } |
|
511
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diff
changeset
|
1777 |
|
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|
1778 |
| 646 | 1779 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
| 1780 /* out */ uint64_t& uncompressedSize, | |
| 1781 /* out */ unsigned int& countStudies, | |
| 1782 /* out */ unsigned int& countSeries, | |
| 1783 /* out */ unsigned int& countInstances, | |
| 1784 const std::string& publicId) | |
| 1785 { | |
| 1786 boost::mutex::scoped_lock lock(mutex_); | |
| 1787 | |
| 1788 ResourceType type; | |
| 1789 int64_t top; | |
| 1294 | 1790 if (!db_.LookupResource(top, type, publicId)) |
| 646 | 1791 { |
| 1792 throw OrthancException(ErrorCode_UnknownResource); | |
| 1793 } | |
| 1794 | |
| 1795 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
| 1796 countSeries, countInstances, top, type); | |
| 1797 } | |
| 1798 | |
| 1799 | |
|
511
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changeset
|
1800 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
|
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|
1801 { |
|
810
401a9633e492
configuration into a namespace
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parents:
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diff
changeset
|
1802 int stableAge = Configuration::GetGlobalIntegerParameter("StableAge", 60); |
|
511
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|
1803 if (stableAge <= 0) |
|
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|
1804 { |
|
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|
1805 stableAge = 60; |
|
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|
1806 } |
|
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|
1807 |
|
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|
1808 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
|
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|
1809 |
|
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changeset
|
1810 while (!that->done_) |
|
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changeset
|
1811 { |
|
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|
1812 // Check for stable resources each second |
|
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changeset
|
1813 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
|
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changeset
|
1814 |
|
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changeset
|
1815 boost::mutex::scoped_lock lock(that->mutex_); |
| 513 | 1816 |
|
511
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changeset
|
1817 while (!that->unstableResources_.IsEmpty() && |
|
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1818 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1819 { |
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1820 // This DICOM resource has not received any new instance for |
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1821 // some time. It can be considered as stable. |
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1822 |
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1823 UnstableResourcePayload payload; |
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1824 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1825 |
| 513 | 1826 // Ensure that the resource is still existing before logging the change |
| 1247 | 1827 if (that->db_.IsExistingResource(id)) |
|
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1828 { |
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1829 switch (payload.GetResourceType()) |
| 513 | 1830 { |
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1831 case ResourceType_Patient: |
| 1237 | 1832 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
| 513 | 1833 break; |
|
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1834 |
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1835 case ResourceType_Study: |
| 1237 | 1836 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
| 513 | 1837 break; |
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1838 |
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1839 case ResourceType_Series: |
| 1237 | 1840 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
| 513 | 1841 break; |
| 1842 | |
| 1843 default: | |
| 1844 throw OrthancException(ErrorCode_InternalError); | |
| 1845 } | |
| 1846 | |
| 1847 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
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1848 } |
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1849 } |
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1850 } |
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1851 |
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1852 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1853 } |
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1854 |
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1855 |
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1856 void ServerIndex::MarkAsUnstable(int64_t id, |
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1857 Orthanc::ResourceType type, |
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1858 const std::string& publicId) |
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1859 { |
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1860 // WARNING: Before calling this method, "mutex_" must be locked. |
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1861 |
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1862 assert(type == Orthanc::ResourceType_Patient || |
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1863 type == Orthanc::ResourceType_Study || |
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1864 type == Orthanc::ResourceType_Series); |
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1865 |
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1866 UnstableResourcePayload payload(type, publicId); |
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1867 unstableResources_.AddOrMakeMostRecent(id, payload); |
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1868 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
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1869 |
| 1237 | 1870 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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1871 } |
| 521 | 1872 |
| 1873 | |
| 1874 | |
| 1162 | 1875 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
| 1876 const DicomTag& tag, | |
| 1877 const std::string& value, | |
| 1878 ResourceType type) | |
| 615 | 1879 { |
| 1880 result.clear(); | |
| 1881 | |
| 1882 boost::mutex::scoped_lock lock(mutex_); | |
| 1883 | |
| 1884 std::list<int64_t> id; | |
| 1247 | 1885 db_.LookupIdentifier(id, tag, value); |
| 615 | 1886 |
| 1887 for (std::list<int64_t>::const_iterator | |
| 656 | 1888 it = id.begin(); it != id.end(); ++it) |
| 615 | 1889 { |
| 1247 | 1890 if (db_.GetResourceType(*it) == type) |
| 615 | 1891 { |
| 1247 | 1892 result.push_back(db_.GetPublicId(*it)); |
| 615 | 1893 } |
| 1894 } | |
| 1895 } | |
| 1896 | |
| 1897 | |
| 1162 | 1898 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
| 1899 const DicomTag& tag, | |
| 1900 const std::string& value) | |
| 521 | 1901 { |
| 1902 result.clear(); | |
| 1903 | |
| 1904 boost::mutex::scoped_lock lock(mutex_); | |
| 1905 | |
| 1906 std::list<int64_t> id; | |
| 1247 | 1907 db_.LookupIdentifier(id, tag, value); |
| 521 | 1908 |
| 1909 for (std::list<int64_t>::const_iterator | |
| 656 | 1910 it = id.begin(); it != id.end(); ++it) |
| 521 | 1911 { |
| 1247 | 1912 result.push_back(db_.GetPublicId(*it)); |
| 521 | 1913 } |
| 1914 } | |
| 1915 | |
| 1916 | |
| 1162 | 1917 void ServerIndex::LookupIdentifier(std::list< std::pair<ResourceType, std::string> >& result, |
| 1918 const std::string& value) | |
| 521 | 1919 { |
| 1920 result.clear(); | |
| 1921 | |
| 1922 boost::mutex::scoped_lock lock(mutex_); | |
| 1923 | |
| 1924 std::list<int64_t> id; | |
| 1247 | 1925 db_.LookupIdentifier(id, value); |
| 521 | 1926 |
| 1927 for (std::list<int64_t>::const_iterator | |
| 656 | 1928 it = id.begin(); it != id.end(); ++it) |
| 521 | 1929 { |
| 1247 | 1930 result.push_back(std::make_pair(db_.GetResourceType(*it), |
| 1931 db_.GetPublicId(*it))); | |
| 521 | 1932 } |
| 1933 } | |
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1934 |
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1935 |
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1936 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1937 const std::string& publicId) |
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1938 { |
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1939 boost::mutex::scoped_lock lock(mutex_); |
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1940 |
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1941 Transaction t(*this); |
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1942 |
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1943 ResourceType resourceType; |
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1944 int64_t resourceId; |
| 1294 | 1945 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
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1946 { |
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1947 return StoreStatus_Failure; // Inexistent resource |
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1948 } |
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1949 |
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1950 // Remove possible previous attachment |
| 1247 | 1951 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
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1952 |
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1953 // Locate the patient of the target resource |
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1954 int64_t patientId = resourceId; |
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1955 for (;;) |
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1956 { |
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1957 int64_t parent; |
| 1247 | 1958 if (db_.LookupParent(parent, patientId)) |
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1959 { |
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1960 // We have not reached the patient level yet |
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1961 patientId = parent; |
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1962 } |
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1963 else |
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1964 { |
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1965 // We have reached the patient level |
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1966 break; |
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1967 } |
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1968 } |
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1969 |
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1970 // Possibly apply the recycling mechanism while preserving this patient |
| 1247 | 1971 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
| 1972 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
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1973 |
| 1247 | 1974 db_.AddAttachment(resourceId, attachment); |
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1975 |
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1976 t.Commit(attachment.GetCompressedSize()); |
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1977 |
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1978 return StoreStatus_Success; |
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1979 } |
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1980 |
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1981 |
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1982 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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1983 FileContentType type) |
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1984 { |
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1985 boost::mutex::scoped_lock lock(mutex_); |
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1986 Transaction t(*this); |
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1987 |
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1988 ResourceType rtype; |
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1989 int64_t id; |
| 1294 | 1990 if (!db_.LookupResource(id, rtype, publicId)) |
|
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1991 { |
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1992 throw OrthancException(ErrorCode_UnknownResource); |
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1993 } |
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1994 |
| 1247 | 1995 db_.DeleteAttachment(id, type); |
|
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1996 |
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1997 t.Commit(0); |
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1998 } |
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1999 |
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2000 |
|
1002
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2001 bool ServerIndex::GetMetadata(Json::Value& target, |
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2002 const std::string& publicId) |
|
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2003 { |
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2004 boost::mutex::scoped_lock lock(mutex_); |
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2005 |
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2006 target = Json::objectValue; |
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2007 |
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2008 ResourceType type; |
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2009 int64_t id; |
| 1294 | 2010 if (!db_.LookupResource(id, type, publicId)) |
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2011 { |
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2012 return false; |
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2013 } |
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2014 |
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2015 std::list<MetadataType> metadata; |
| 1247 | 2016 db_.ListAvailableMetadata(metadata, id); |
|
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2017 |
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2018 for (std::list<MetadataType>::const_iterator |
| 1304 | 2019 it = metadata.begin(); it != metadata.end(); ++it) |
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2020 { |
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2021 std::string key = EnumerationToString(*it); |
| 1238 | 2022 |
| 2023 std::string value; | |
| 1247 | 2024 if (!db_.LookupMetadata(value, id, *it)) |
| 1238 | 2025 { |
| 2026 value.clear(); | |
| 2027 } | |
| 2028 | |
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2029 target[key] = value; |
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2030 } |
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2031 |
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2032 return true; |
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2033 } |
|
1218
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2034 |
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2035 |
|
1249
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2036 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
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2037 const std::string& value) |
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2038 { |
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2039 boost::mutex::scoped_lock lock(mutex_); |
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2040 db_.SetGlobalProperty(property, value); |
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2041 } |
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2042 |
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2043 |
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2044 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
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2045 const std::string& defaultValue) |
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2046 { |
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2047 boost::mutex::scoped_lock lock(mutex_); |
| 1239 | 2048 |
| 2049 std::string value; | |
| 1247 | 2050 if (db_.LookupGlobalProperty(value, property)) |
| 1239 | 2051 { |
| 2052 return value; | |
| 2053 } | |
| 2054 else | |
| 2055 { | |
| 2056 return defaultValue; | |
| 2057 } | |
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2058 } |
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2059 |
| 1352 | 2060 |
| 2061 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
| 2062 const std::string& publicId, | |
| 2063 ResourceType expectedType) | |
| 2064 { | |
| 2065 result.Clear(); | |
| 2066 | |
| 2067 boost::mutex::scoped_lock lock(mutex_); | |
| 2068 | |
| 2069 // Lookup for the requested resource | |
| 2070 int64_t id; | |
| 2071 ResourceType type; | |
| 2072 if (!db_.LookupResource(id, type, publicId) || | |
| 2073 type != expectedType) | |
| 2074 { | |
| 2075 return false; | |
| 2076 } | |
| 2077 else | |
| 2078 { | |
| 2079 db_.GetMainDicomTags(result, id); | |
| 2080 return true; | |
| 2081 } | |
| 2082 } | |
| 0 | 2083 } |