Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 754:b440dab8640d Orthanc-0.7.4
Orthanc-0.7.4
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 16 Apr 2014 11:41:23 +0200 |
parents | 5197fd35333c |
children | aebf0071020e |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, |
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4 * Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
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33 #include "OrthancRestApi.h" |
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34 |
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35 #include <glog/logging.h> |
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36 |
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37 namespace Orthanc |
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38 { |
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39 // TODO IMPROVE MULTITHREADING |
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40 // Every call to "ParsedDicomFile" must lock this mutex!!! |
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41 static boost::mutex cacheMutex_; |
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42 |
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43 |
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44 // Raw access to the DICOM tags of an instance ------------------------------ |
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45 |
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46 static void GetRawContent(RestApi::GetCall& call) |
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47 { |
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48 boost::mutex::scoped_lock lock(cacheMutex_); |
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49 |
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50 ServerContext& context = OrthancRestApi::GetContext(call); |
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51 |
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52 std::string id = call.GetUriComponent("id", ""); |
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53 ParsedDicomFile& dicom = context.GetDicomFile(id); |
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54 dicom.SendPathValue(call.GetOutput(), call.GetTrailingUri()); |
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55 } |
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56 |
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57 |
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58 |
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59 // Modification of DICOM instances ------------------------------------------ |
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60 |
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61 namespace |
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62 { |
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63 typedef std::set<DicomTag> Removals; |
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64 typedef std::map<DicomTag, std::string> Replacements; |
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65 typedef std::map< std::pair<DicomRootLevel, std::string>, std::string> UidMap; |
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66 } |
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67 |
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68 static void ReplaceInstanceInternal(ParsedDicomFile& toModify, |
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69 const Removals& removals, |
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70 const Replacements& replacements, |
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71 DicomReplaceMode mode, |
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72 bool removePrivateTags) |
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73 { |
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74 if (removePrivateTags) |
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75 { |
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76 toModify.RemovePrivateTags(); |
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77 } |
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78 |
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79 for (Removals::const_iterator it = removals.begin(); |
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80 it != removals.end(); ++it) |
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81 { |
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82 toModify.Remove(*it); |
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83 } |
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84 |
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85 for (Replacements::const_iterator it = replacements.begin(); |
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86 it != replacements.end(); ++it) |
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87 { |
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88 toModify.Replace(it->first, it->second, mode); |
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89 } |
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90 |
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91 // A new SOP instance UID is automatically generated |
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92 std::string instanceUid = FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance); |
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93 toModify.Replace(DICOM_TAG_SOP_INSTANCE_UID, instanceUid, DicomReplaceMode_InsertIfAbsent); |
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94 } |
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95 |
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96 |
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97 static void ParseRemovals(Removals& target, |
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98 const Json::Value& removals) |
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99 { |
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100 if (!removals.isArray()) |
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101 { |
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102 throw OrthancException(ErrorCode_BadRequest); |
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103 } |
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104 |
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105 for (Json::Value::ArrayIndex i = 0; i < removals.size(); i++) |
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106 { |
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107 std::string name = removals[i].asString(); |
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108 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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109 target.insert(tag); |
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110 |
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111 VLOG(1) << "Removal: " << name << " " << tag << std::endl; |
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112 } |
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113 } |
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114 |
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115 |
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116 static void ParseReplacements(Replacements& target, |
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117 const Json::Value& replacements) |
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118 { |
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119 if (!replacements.isObject()) |
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120 { |
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121 throw OrthancException(ErrorCode_BadRequest); |
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122 } |
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123 |
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124 Json::Value::Members members = replacements.getMemberNames(); |
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125 for (size_t i = 0; i < members.size(); i++) |
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126 { |
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127 const std::string& name = members[i]; |
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128 std::string value = replacements[name].asString(); |
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129 |
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130 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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131 target[tag] = value; |
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132 |
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133 VLOG(1) << "Replacement: " << name << " " << tag << " == " << value << std::endl; |
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134 } |
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135 } |
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136 |
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137 |
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138 static std::string GeneratePatientName(ServerContext& context) |
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139 { |
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140 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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141 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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142 } |
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143 |
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144 |
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145 static void SetupAnonymization(Removals& removals, |
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146 Replacements& replacements) |
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147 { |
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148 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles |
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149 removals.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID |
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150 //removals.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set by ReplaceInstanceInternal() |
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151 removals.insert(DicomTag(0x0008, 0x0050)); // Accession Number |
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152 removals.insert(DicomTag(0x0008, 0x0080)); // Institution Name |
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153 removals.insert(DicomTag(0x0008, 0x0081)); // Institution Address |
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154 removals.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name |
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155 removals.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address |
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156 removals.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers |
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157 removals.insert(DicomTag(0x0008, 0x1010)); // Station Name |
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158 removals.insert(DicomTag(0x0008, 0x1030)); // Study Description |
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159 removals.insert(DicomTag(0x0008, 0x103e)); // Series Description |
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160 removals.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name |
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161 removals.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record |
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162 removals.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name |
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163 removals.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study |
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164 removals.insert(DicomTag(0x0008, 0x1070)); // Operators' Name |
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165 removals.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description |
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166 removals.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID |
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167 removals.insert(DicomTag(0x0008, 0x2111)); // Derivation Description |
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168 removals.insert(DicomTag(0x0010, 0x0010)); // Patient's Name |
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169 //removals.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*) |
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170 removals.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date |
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171 removals.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time |
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172 removals.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex |
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173 removals.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids |
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174 removals.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names |
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175 removals.insert(DicomTag(0x0010, 0x1010)); // Patient's Age |
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176 removals.insert(DicomTag(0x0010, 0x1020)); // Patient's Size |
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177 removals.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight |
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178 removals.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator |
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179 removals.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group |
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180 removals.insert(DicomTag(0x0010, 0x2180)); // Occupation |
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181 removals.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History |
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182 removals.insert(DicomTag(0x0010, 0x4000)); // Patient Comments |
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183 removals.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number |
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184 removals.insert(DicomTag(0x0018, 0x1030)); // Protocol Name |
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185 //removals.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => cf. below (*) |
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186 //removals.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => cf. below (*) |
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187 removals.insert(DicomTag(0x0020, 0x0010)); // Study ID |
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188 removals.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID |
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189 removals.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID |
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190 removals.insert(DicomTag(0x0020, 0x4000)); // Image Comments |
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191 removals.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence |
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192 removals.insert(DicomTag(0x0040, 0xa124)); // UID |
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193 removals.insert(DicomTag(0x0040, 0xa730)); // Content Sequence |
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194 removals.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID |
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195 removals.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID |
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196 removals.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID |
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197 |
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198 /** |
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199 * (*) Patient ID, Study Instance UID and Series Instance UID |
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200 * are modified by "AnonymizeInstance()" if anonymizing a single |
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201 * instance, or by "RetrieveMappedUid()" if anonymizing a |
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202 * patient/study/series. |
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203 **/ |
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204 |
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205 |
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206 // Some more removals (from the experience of DICOM files at the CHU of Liege) |
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207 removals.insert(DicomTag(0x0010, 0x1040)); // Patient's Address |
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208 removals.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician |
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209 removals.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers |
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210 removals.insert(DicomTag(0x0010, 0x2000)); // Medical Alerts |
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211 |
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212 // Set the DeidentificationMethod tag |
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213 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0063), "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1")); |
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214 |
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215 // Set the PatientIdentityRemoved tag |
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216 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0062), "YES")); |
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217 } |
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218 |
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219 |
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220 static bool ParseModifyRequest(Removals& removals, |
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221 Replacements& replacements, |
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222 bool& removePrivateTags, |
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223 const RestApi::PostCall& call) |
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224 { |
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225 removePrivateTags = false; |
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226 Json::Value request; |
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227 if (call.ParseJsonRequest(request) && |
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228 request.isObject()) |
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229 { |
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230 Json::Value removalsPart = Json::arrayValue; |
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231 Json::Value replacementsPart = Json::objectValue; |
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232 |
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233 if (request.isMember("Remove")) |
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234 { |
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235 removalsPart = request["Remove"]; |
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236 } |
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237 |
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238 if (request.isMember("Replace")) |
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239 { |
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240 replacementsPart = request["Replace"]; |
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241 } |
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242 |
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243 if (request.isMember("RemovePrivateTags")) |
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244 { |
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245 removePrivateTags = true; |
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246 } |
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247 |
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248 ParseRemovals(removals, removalsPart); |
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249 ParseReplacements(replacements, replacementsPart); |
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250 |
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251 return true; |
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252 } |
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253 else |
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254 { |
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255 return false; |
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256 } |
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257 } |
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258 |
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259 |
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260 static bool ParseAnonymizationRequest(Removals& removals, |
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261 Replacements& replacements, |
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262 bool& removePrivateTags, |
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263 bool& keepPatientId, |
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264 RestApi::PostCall& call) |
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265 { |
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266 ServerContext& context = OrthancRestApi::GetContext(call); |
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267 |
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268 removePrivateTags = true; |
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269 keepPatientId = false; |
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270 |
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271 Json::Value request; |
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272 if (call.ParseJsonRequest(request) && |
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273 request.isObject()) |
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274 { |
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275 Json::Value keepPart = Json::arrayValue; |
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276 Json::Value removalsPart = Json::arrayValue; |
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277 Json::Value replacementsPart = Json::objectValue; |
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278 |
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279 if (request.isMember("Keep")) |
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280 { |
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281 keepPart = request["Keep"]; |
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282 } |
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283 |
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284 if (request.isMember("KeepPrivateTags")) |
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285 { |
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286 removePrivateTags = false; |
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287 } |
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288 |
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289 if (request.isMember("Replace")) |
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290 { |
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291 replacementsPart = request["Replace"]; |
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292 } |
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293 |
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294 Removals toKeep; |
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295 ParseRemovals(toKeep, keepPart); |
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296 |
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297 SetupAnonymization(removals, replacements); |
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298 |
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299 for (Removals::iterator it = toKeep.begin(); it != toKeep.end(); ++it) |
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300 { |
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301 if (*it == DICOM_TAG_PATIENT_ID) |
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302 { |
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303 keepPatientId = true; |
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304 } |
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305 |
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306 removals.erase(*it); |
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307 } |
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308 |
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309 Removals additionalRemovals; |
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310 ParseRemovals(additionalRemovals, removalsPart); |
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311 |
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312 for (Removals::iterator it = additionalRemovals.begin(); |
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313 it != additionalRemovals.end(); ++it) |
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314 { |
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315 removals.insert(*it); |
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316 } |
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317 |
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318 ParseReplacements(replacements, replacementsPart); |
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319 |
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320 // Generate random Patient's Name if none is specified |
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321 if (toKeep.find(DICOM_TAG_PATIENT_NAME) == toKeep.end() && |
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322 replacements.find(DICOM_TAG_PATIENT_NAME) == replacements.end()) |
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323 { |
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324 replacements.insert(std::make_pair(DICOM_TAG_PATIENT_NAME, GeneratePatientName(context))); |
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325 } |
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326 |
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327 return true; |
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328 } |
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329 else |
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330 { |
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331 return false; |
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332 } |
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333 } |
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334 |
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335 |
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336 static void AnonymizeOrModifyInstance(Removals& removals, |
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337 Replacements& replacements, |
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338 bool removePrivateTags, |
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339 RestApi::PostCall& call) |
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340 { |
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341 boost::mutex::scoped_lock lock(cacheMutex_); |
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342 ServerContext& context = OrthancRestApi::GetContext(call); |
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343 |
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344 std::string id = call.GetUriComponent("id", ""); |
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345 ParsedDicomFile& dicom = context.GetDicomFile(id); |
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346 |
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347 std::auto_ptr<ParsedDicomFile> modified(dicom.Clone()); |
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348 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags); |
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349 modified->Answer(call.GetOutput()); |
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350 } |
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351 |
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352 |
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353 static bool RetrieveMappedUid(ParsedDicomFile& dicom, |
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354 DicomRootLevel level, |
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355 Replacements& replacements, |
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356 UidMap& uidMap) |
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357 { |
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358 std::auto_ptr<DicomTag> tag; |
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359 |
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360 switch (level) |
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361 { |
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362 case DicomRootLevel_Series: |
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363 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID)); |
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364 break; |
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365 |
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366 case DicomRootLevel_Study: |
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367 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID)); |
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368 break; |
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369 |
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370 case DicomRootLevel_Patient: |
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371 tag.reset(new DicomTag(DICOM_TAG_PATIENT_ID)); |
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372 break; |
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373 |
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374 default: |
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375 throw OrthancException(ErrorCode_InternalError); |
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376 } |
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377 |
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378 std::string original; |
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379 if (!dicom.GetTagValue(original, *tag)) |
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380 { |
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381 throw OrthancException(ErrorCode_InternalError); |
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382 } |
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383 |
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384 std::string mapped; |
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385 bool isNew; |
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386 |
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387 UidMap::const_iterator previous = uidMap.find(std::make_pair(level, original)); |
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388 if (previous == uidMap.end()) |
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389 { |
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390 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level); |
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391 uidMap.insert(std::make_pair(std::make_pair(level, original), mapped)); |
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392 isNew = true; |
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393 } |
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394 else |
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395 { |
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396 mapped = previous->second; |
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397 isNew = false; |
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398 } |
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399 |
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400 replacements[*tag] = mapped; |
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401 return isNew; |
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402 } |
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403 |
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404 |
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405 static void AnonymizeOrModifyResource(Removals& removals, |
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406 Replacements& replacements, |
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407 bool removePrivateTags, |
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408 bool keepPatientId, |
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409 MetadataType metadataType, |
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410 ChangeType changeType, |
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411 ResourceType resourceType, |
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412 RestApi::PostCall& call) |
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413 { |
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414 typedef std::list<std::string> Instances; |
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415 |
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416 bool isFirst = true; |
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417 Json::Value result(Json::objectValue); |
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418 |
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419 boost::mutex::scoped_lock lock(cacheMutex_); |
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420 ServerContext& context = OrthancRestApi::GetContext(call); |
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421 |
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422 Instances instances; |
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423 std::string id = call.GetUriComponent("id", ""); |
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424 context.GetIndex().GetChildInstances(instances, id); |
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425 |
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426 if (instances.empty()) |
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427 { |
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428 return; |
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429 } |
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430 |
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431 /** |
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432 * Loop over all the instances of the resource. |
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433 **/ |
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434 |
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435 UidMap uidMap; |
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436 for (Instances::const_iterator it = instances.begin(); |
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437 it != instances.end(); ++it) |
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438 { |
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439 LOG(INFO) << "Modifying instance " << *it; |
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440 ParsedDicomFile& original = context.GetDicomFile(*it); |
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441 |
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442 DicomInstanceHasher originalHasher = original.GetHasher(); |
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443 |
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444 if (isFirst && keepPatientId) |
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445 { |
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446 std::string patientId = originalHasher.GetPatientId(); |
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447 uidMap[std::make_pair(DicomRootLevel_Patient, patientId)] = patientId; |
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448 } |
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449 |
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450 bool isNewSeries = RetrieveMappedUid(original, DicomRootLevel_Series, replacements, uidMap); |
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451 bool isNewStudy = RetrieveMappedUid(original, DicomRootLevel_Study, replacements, uidMap); |
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452 bool isNewPatient = RetrieveMappedUid(original, DicomRootLevel_Patient, replacements, uidMap); |
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453 |
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454 |
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455 /** |
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456 * Compute the resulting DICOM instance and store it into the Orthanc store. |
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457 **/ |
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458 |
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459 std::auto_ptr<ParsedDicomFile> modified(original.Clone()); |
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460 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags); |
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461 |
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462 std::string modifiedInstance; |
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463 if (context.Store(modifiedInstance, modified->GetDicom()) != StoreStatus_Success) |
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464 { |
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465 LOG(ERROR) << "Error while storing a modified instance " << *it; |
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466 return; |
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467 } |
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468 |
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469 |
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470 /** |
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471 * Record metadata information (AnonymizedFrom/ModifiedFrom). |
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472 **/ |
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473 |
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474 DicomInstanceHasher modifiedHasher = modified->GetHasher(); |
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475 |
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476 if (isNewSeries) |
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477 { |
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478 context.GetIndex().SetMetadata(modifiedHasher.HashSeries(), |
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479 metadataType, originalHasher.HashSeries()); |
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480 } |
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481 |
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482 if (isNewStudy) |
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483 { |
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484 context.GetIndex().SetMetadata(modifiedHasher.HashStudy(), |
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485 metadataType, originalHasher.HashStudy()); |
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486 } |
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487 |
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488 if (isNewPatient) |
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489 { |
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490 context.GetIndex().SetMetadata(modifiedHasher.HashPatient(), |
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491 metadataType, originalHasher.HashPatient()); |
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492 } |
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493 |
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494 assert(*it == originalHasher.HashInstance()); |
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495 assert(modifiedInstance == modifiedHasher.HashInstance()); |
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496 context.GetIndex().SetMetadata(modifiedInstance, metadataType, *it); |
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497 |
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498 |
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499 /** |
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500 * Compute the JSON object that is returned by the REST call. |
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501 **/ |
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502 |
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503 if (isFirst) |
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504 { |
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505 std::string newId; |
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506 |
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507 switch (resourceType) |
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508 { |
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509 case ResourceType_Series: |
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510 newId = modifiedHasher.HashSeries(); |
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511 break; |
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|
512 |
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513 case ResourceType_Study: |
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514 newId = modifiedHasher.HashStudy(); |
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515 break; |
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|
516 |
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517 case ResourceType_Patient: |
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518 newId = modifiedHasher.HashPatient(); |
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519 break; |
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|
520 |
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521 default: |
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522 throw OrthancException(ErrorCode_InternalError); |
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523 } |
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|
524 |
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525 result["Type"] = EnumerationToString(resourceType); |
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526 result["ID"] = newId; |
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527 result["Path"] = GetBasePath(resourceType, newId); |
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528 result["PatientID"] = modifiedHasher.HashPatient(); |
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529 isFirst = false; |
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530 } |
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|
531 } |
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|
532 |
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diff
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533 call.GetOutput().AnswerJson(result); |
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534 } |
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|
535 |
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diff
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|
536 |
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537 |
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538 static void ModifyInstance(RestApi::PostCall& call) |
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parents:
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539 { |
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parents:
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540 Removals removals; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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541 Replacements replacements; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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542 bool removePrivateTags; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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543 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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544 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
5197fd35333c
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545 { |
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546 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call); |
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parents:
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547 } |
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parents:
diff
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|
548 } |
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parents:
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|
549 |
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parents:
diff
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|
550 |
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parents:
diff
changeset
|
551 static void AnonymizeInstance(RestApi::PostCall& call) |
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parents:
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552 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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553 Removals removals; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
554 Replacements replacements; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
555 bool removePrivateTags, keepPatientId; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
556 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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557 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, keepPatientId, call)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
558 { |
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parents:
diff
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|
559 // TODO Handle "keepPatientId" |
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parents:
diff
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|
560 |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
561 // Generate random patient ID if not specified |
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parents:
diff
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562 if (replacements.find(DICOM_TAG_PATIENT_ID) == replacements.end()) |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
563 { |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
564 replacements.insert(std::make_pair(DICOM_TAG_PATIENT_ID, |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
565 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient))); |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
566 } |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
567 |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
568 // Generate random study UID if not specified |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
569 if (replacements.find(DICOM_TAG_STUDY_INSTANCE_UID) == replacements.end()) |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
570 { |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
571 replacements.insert(std::make_pair(DICOM_TAG_STUDY_INSTANCE_UID, |
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refactoring of OrthancRestApi
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parents:
diff
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572 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study))); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
573 } |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
574 |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
575 // Generate random series UID if not specified |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
576 if (replacements.find(DICOM_TAG_SERIES_INSTANCE_UID) == replacements.end()) |
5197fd35333c
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parents:
diff
changeset
|
577 { |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
578 replacements.insert(std::make_pair(DICOM_TAG_SERIES_INSTANCE_UID, |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
579 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series))); |
5197fd35333c
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parents:
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|
580 } |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
581 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
582 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call); |
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parents:
diff
changeset
|
583 } |
5197fd35333c
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parents:
diff
changeset
|
584 } |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
585 |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
586 |
5197fd35333c
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parents:
diff
changeset
|
587 static void ModifySeriesInplace(RestApi::PostCall& call) |
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parents:
diff
changeset
|
588 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
589 Removals removals; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
590 Replacements replacements; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
591 bool removePrivateTags; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
592 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
593 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
594 { |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
595 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, true /*keepPatientId*/, |
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parents:
diff
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|
596 MetadataType_ModifiedFrom, ChangeType_ModifiedSeries, |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
597 ResourceType_Series, call); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
598 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
599 } |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
600 |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
601 |
5197fd35333c
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parents:
diff
changeset
|
602 static void AnonymizeSeriesInplace(RestApi::PostCall& call) |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
603 { |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
604 Removals removals; |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
605 Replacements replacements; |
5197fd35333c
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parents:
diff
changeset
|
606 bool removePrivateTags, keepPatientId; |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
607 |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
608 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, keepPatientId, call)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
609 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
610 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, keepPatientId, |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
611 MetadataType_AnonymizedFrom, ChangeType_AnonymizedSeries, |
5197fd35333c
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parents:
diff
changeset
|
612 ResourceType_Series, call); |
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parents:
diff
changeset
|
613 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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614 } |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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|
615 |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
616 |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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617 static void ModifyStudyInplace(RestApi::PostCall& call) |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
618 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
619 Removals removals; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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620 Replacements replacements; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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621 bool removePrivateTags; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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622 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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623 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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624 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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625 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, true /*keepPatientId*/, |
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parents:
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626 MetadataType_ModifiedFrom, ChangeType_ModifiedStudy, |
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parents:
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627 ResourceType_Study, call); |
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628 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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629 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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630 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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631 |
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632 static void AnonymizeStudyInplace(RestApi::PostCall& call) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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633 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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634 Removals removals; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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635 Replacements replacements; |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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636 bool removePrivateTags, keepPatientId; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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637 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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638 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, keepPatientId, call)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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639 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
640 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, keepPatientId, |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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641 MetadataType_AnonymizedFrom, ChangeType_AnonymizedStudy, |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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642 ResourceType_Study, call); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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643 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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644 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
645 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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646 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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647 /*static void ModifyPatientInplace(RestApi::PostCall& call) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
648 { |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
649 Removals removals; |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
650 Replacements replacements; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
651 bool removePrivateTags; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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652 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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653 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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654 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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655 AnonymizeOrModifyResource(false, removals, replacements, removePrivateTags, |
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parents:
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656 MetadataType_ModifiedFrom, ChangeType_ModifiedPatient, |
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parents:
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657 ResourceType_Patient, call); |
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parents:
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658 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
659 }*/ |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
660 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
661 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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662 static void AnonymizePatientInplace(RestApi::PostCall& call) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
663 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
664 Removals removals; |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
665 Replacements replacements; |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
666 bool removePrivateTags, keepPatientId; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
667 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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668 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, keepPatientId, call)) |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
669 { |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
670 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, keepPatientId, |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
671 MetadataType_AnonymizedFrom, ChangeType_AnonymizedPatient, |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
672 ResourceType_Patient, call); |
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parents:
diff
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|
673 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
674 } |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
675 |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
676 |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
677 |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
678 void OrthancRestApi::RegisterAnonymizeModify() |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
679 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
680 Register("/instances/{id}/content/*", GetRawContent); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
681 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
682 Register("/instances/{id}/modify", ModifyInstance); |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
683 Register("/series/{id}/modify", ModifySeriesInplace); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
684 Register("/studies/{id}/modify", ModifyStudyInplace); |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
685 //Register("/patients/{id}/modify", ModifyPatientInplace); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
686 |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
687 Register("/instances/{id}/anonymize", AnonymizeInstance); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
688 Register("/series/{id}/anonymize", AnonymizeSeriesInplace); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
689 Register("/studies/{id}/anonymize", AnonymizeStudyInplace); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
690 Register("/patients/{id}/anonymize", AnonymizePatientInplace); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
691 } |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
692 } |