annotate OrthancServer/ParsedDicomFile.cpp @ 1977:ad95331c526a

trace log of http headers
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 15 Apr 2016 10:47:53 +0200
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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Sebastien Jodogne <s.jodogne@gmail.com>
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33
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34 /*=========================================================================
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35
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36 This file is based on portions of the following project:
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37
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38 Program: GDCM (Grassroots DICOM). A DICOM library
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39 Module: http://gdcm.sourceforge.net/Copyright.html
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40
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41 Copyright (c) 2006-2011 Mathieu Malaterre
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42 Copyright (c) 1993-2005 CREATIS
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43 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image)
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44 All rights reserved.
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45
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46 Redistribution and use in source and binary forms, with or without
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47 modification, are permitted provided that the following conditions are met:
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48
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49 * Redistributions of source code must retain the above copyright notice,
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Sebastien Jodogne <s.jodogne@gmail.com>
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50 this list of conditions and the following disclaimer.
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51
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52 * Redistributions in binary form must reproduce the above copyright notice,
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53 this list of conditions and the following disclaimer in the documentation
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54 and/or other materials provided with the distribution.
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55
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56 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any
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57 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to
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58 endorse or promote products derived from this software without specific
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59 prior written permission.
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60
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61 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
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62 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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63 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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64 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
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65 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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66 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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67 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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68 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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69 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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70 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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71
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72 =========================================================================*/
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73
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74
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75 #include "PrecompiledHeadersServer.h"
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76
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77 #ifndef NOMINMAX
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78 #define NOMINMAX
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79 #endif
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80
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81 #include "ParsedDicomFile.h"
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82
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83 #include "OrthancInitialization.h"
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84 #include "ServerToolbox.h"
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85 #include "FromDcmtkBridge.h"
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86 #include "ToDcmtkBridge.h"
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87 #include "Internals/DicomFrameIndex.h"
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88 #include "../Core/Images/JpegReader.h"
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89 #include "../Core/Images/PngReader.h"
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90 #include "../Core/Logging.h"
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91 #include "../Core/OrthancException.h"
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92 #include "../Core/Toolbox.h"
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93 #include "../Core/Uuid.h"
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94
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95 #include <list>
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96 #include <limits>
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97
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98 #include <boost/lexical_cast.hpp>
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99
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100 #include <dcmtk/dcmdata/dcchrstr.h>
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101 #include <dcmtk/dcmdata/dcdicent.h>
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102 #include <dcmtk/dcmdata/dcdict.h>
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103 #include <dcmtk/dcmdata/dcfilefo.h>
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104 #include <dcmtk/dcmdata/dcuid.h>
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105 #include <dcmtk/dcmdata/dcmetinf.h>
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106 #include <dcmtk/dcmdata/dcdeftag.h>
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107
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108 #include <dcmtk/dcmdata/dcvrae.h>
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109 #include <dcmtk/dcmdata/dcvras.h>
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110 #include <dcmtk/dcmdata/dcvrcs.h>
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111 #include <dcmtk/dcmdata/dcvrda.h>
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112 #include <dcmtk/dcmdata/dcvrds.h>
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113 #include <dcmtk/dcmdata/dcvrdt.h>
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114 #include <dcmtk/dcmdata/dcvrfd.h>
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115 #include <dcmtk/dcmdata/dcvrfl.h>
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116 #include <dcmtk/dcmdata/dcvris.h>
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117 #include <dcmtk/dcmdata/dcvrlo.h>
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118 #include <dcmtk/dcmdata/dcvrlt.h>
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119 #include <dcmtk/dcmdata/dcvrpn.h>
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120 #include <dcmtk/dcmdata/dcvrsh.h>
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121 #include <dcmtk/dcmdata/dcvrsl.h>
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122 #include <dcmtk/dcmdata/dcvrss.h>
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123 #include <dcmtk/dcmdata/dcvrst.h>
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124 #include <dcmtk/dcmdata/dcvrtm.h>
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125 #include <dcmtk/dcmdata/dcvrui.h>
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126 #include <dcmtk/dcmdata/dcvrul.h>
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127 #include <dcmtk/dcmdata/dcvrus.h>
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128 #include <dcmtk/dcmdata/dcvrut.h>
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129 #include <dcmtk/dcmdata/dcpixel.h>
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130 #include <dcmtk/dcmdata/dcpixseq.h>
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131 #include <dcmtk/dcmdata/dcpxitem.h>
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132
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133
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134 #include <boost/math/special_functions/round.hpp>
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135 #include <dcmtk/dcmdata/dcostrmb.h>
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136 #include <boost/algorithm/string/predicate.hpp>
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137
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138
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139 #if DCMTK_VERSION_NUMBER <= 360
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140 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax
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141 #endif
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142
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143
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144 static const char* CONTENT_TYPE_OCTET_STREAM = "application/octet-stream";
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145
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146
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147
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148 namespace Orthanc
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149 {
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150 struct ParsedDicomFile::PImpl
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151 {
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152 std::auto_ptr<DcmFileFormat> file_;
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153 std::auto_ptr<DicomFrameIndex> frameIndex_;
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154 };
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155
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156
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157 static void SendPathValueForDictionary(RestApiOutput& output,
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158 DcmItem& dicom)
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159 {
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160 Json::Value v = Json::arrayValue;
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161
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162 for (unsigned long i = 0; i < dicom.card(); i++)
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163 {
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164 DcmElement* element = dicom.getElement(i);
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165 if (element)
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166 {
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167 char buf[16];
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168 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag());
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169 v.append(buf);
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170 }
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171 }
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172
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173 output.AnswerJson(v);
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174 }
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175
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176 static inline uint16_t GetCharValue(char c)
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177 {
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178 if (c >= '0' && c <= '9')
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179 return c - '0';
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180 else if (c >= 'a' && c <= 'f')
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181 return c - 'a' + 10;
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182 else if (c >= 'A' && c <= 'F')
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183 return c - 'A' + 10;
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184 else
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185 return 0;
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186 }
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187
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188 static inline uint16_t GetTagValue(const char* c)
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189 {
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190 return ((GetCharValue(c[0]) << 12) +
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191 (GetCharValue(c[1]) << 8) +
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192 (GetCharValue(c[2]) << 4) +
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193 GetCharValue(c[3]));
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194 }
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195
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196 static void ParseTagAndGroup(DcmTagKey& key,
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197 const std::string& tag)
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198 {
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199 DicomTag t = FromDcmtkBridge::ParseTag(tag);
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200 key = DcmTagKey(t.GetGroup(), t.GetElement());
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201 }
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202
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203
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204 static void SendSequence(RestApiOutput& output,
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205 DcmSequenceOfItems& sequence)
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206 {
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207 // This element is a sequence
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208 Json::Value v = Json::arrayValue;
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209
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210 for (unsigned long i = 0; i < sequence.card(); i++)
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211 {
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212 v.append(boost::lexical_cast<std::string>(i));
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213 }
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214
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215 output.AnswerJson(v);
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216 }
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217
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218
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219 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData,
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220 E_TransferSyntax transferSyntax)
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221 {
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222 DcmPixelSequence* pixelSequence = NULL;
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223 if (pixelData.getEncapsulatedRepresentation
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224 (transferSyntax, NULL, pixelSequence).good() && pixelSequence)
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225 {
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226 return pixelSequence->card();
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227 }
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228 else
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229 {
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230 return 1;
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231 }
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232 }
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233
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234
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235 namespace
790
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236 {
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237 class DicomFieldStream : public IHttpStreamAnswer
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238 {
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239 private:
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240 DcmElement& element_;
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241 uint32_t length_;
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242 uint32_t offset_;
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243 std::string chunk_;
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244 size_t chunkSize_;
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245
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246 public:
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247 DicomFieldStream(DcmElement& element,
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248 E_TransferSyntax transferSyntax) :
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249 element_(element),
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250 length_(element.getLength(transferSyntax)),
1616
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251 offset_(0),
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252 chunkSize_(0)
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253 {
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254 static const size_t CHUNK_SIZE = 64 * 1024; // Use chunks of max 64KB
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255 chunk_.resize(CHUNK_SIZE);
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256 }
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257
1523
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258 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/,
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259 bool /*deflateAllowed*/)
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260 {
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261 // No support for compression
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262 return HttpCompression_None;
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263 }
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264
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265 virtual bool HasContentFilename(std::string& filename)
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266 {
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267 return false;
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268 }
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269
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diff changeset
270 virtual std::string GetContentType()
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271 {
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272 return "";
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diff changeset
273 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
275 virtual uint64_t GetContentLength()
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 {
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
277 return length_;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 }
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
279
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
280 virtual bool ReadNextChunk()
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 {
1520
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1519
diff changeset
282 assert(offset_ <= length_);
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
283
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
284 if (offset_ == length_)
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
285 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
286 return false;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
287 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
288 else
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
289 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
290 if (length_ - offset_ < chunk_.size())
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
291 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
292 chunkSize_ = length_ - offset_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
293 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
294 else
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
295 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
296 chunkSize_ = chunk_.size();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
297 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
298
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
299 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
300
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
301 offset_ += chunkSize_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
302
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
303 if (!cond.good())
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
304 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
305 LOG(ERROR) << "Error while sending a DICOM field: " << cond.text();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
306 throw OrthancException(ErrorCode_InternalError);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
307 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
308
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
309 return true;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
310 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 }
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
312
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
313 virtual const char *GetChunkContent()
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
314 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
315 return chunk_.c_str();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
316 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
317
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
318 virtual size_t GetChunkSize()
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
319 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
320 return chunkSize_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
321 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
322 };
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 static bool AnswerPixelData(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 DcmItem& dicom,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 E_TransferSyntax transferSyntax,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 const std::string* blockUri)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(),
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 DICOM_TAG_PIXEL_DATA.GetElement());
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 DcmElement *element = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 if (!dicom.findAndGetElement(k, element).good() ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 element == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338 return false;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341 try
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 if (blockUri == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345 {
1913
41e402cd7b3a do not generate RC files for non-Windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1902
diff changeset
346 // The user asks how many blocks are present in this pixel data
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
348
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349 Json::Value result(Json::arrayValue);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
350 for (unsigned int i = 0; i < blocks; i++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
351 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352 result.append(boost::lexical_cast<std::string>(i));
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 output.AnswerJson(result);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
357 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362 if (block < GetPixelDataBlockCount(pixelData, transferSyntax))
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 DcmPixelSequence* pixelSequence = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 if (pixelData.getEncapsulatedRepresentation
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 (transferSyntax, NULL, pixelSequence).good() && pixelSequence)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 // This is the case for JPEG transfer syntaxes
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 if (block < pixelSequence->card())
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 DcmPixelItem* pixelItem = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 if (pixelItem->getLength() == 0)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 output.AnswerBuffer(NULL, 0, CONTENT_TYPE_OCTET_STREAM);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
379
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380 Uint8* buffer = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381 if (pixelItem->getUint8Array(buffer).good() && buffer)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383 output.AnswerBuffer(buffer, pixelItem->getLength(), CONTENT_TYPE_OCTET_STREAM);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 // This is the case for raw, uncompressed image buffers
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392 assert(*blockUri == "0");
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
393 DicomFieldStream stream(*element, transferSyntax);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
394 output.AnswerStream(stream);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 catch (boost::bad_lexical_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400 // The URI entered by the user is not a number
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
402 catch (std::bad_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404 // This should never happen
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407 return false;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 static void SendPathValueForLeaf(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 const std::string& tag,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 DcmItem& dicom,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 E_TransferSyntax transferSyntax)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 DcmTagKey k;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 ParseTagAndGroup(k, tag);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420 DcmSequenceOfItems* sequence = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 if (dicom.findAndGetSequence(k, sequence).good() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422 sequence != NULL &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423 sequence->getVR() == EVR_SQ)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 SendSequence(output, *sequence);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 DcmElement* element = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430 if (dicom.findAndGetElement(k, element).good() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 element != NULL &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433 element->getVR() != EVR_SQ)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434 {
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
435 DicomFieldStream stream(*element, transferSyntax);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
436 output.AnswerStream(stream);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
439
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440 void ParsedDicomFile::SendPathValue(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
441 const UriComponents& uri)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
443 DcmItem* dicom = pimpl_->file_->getDataset();
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
444 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer();
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 // Special case: Accessing the pixel data
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447 if (uri.size() == 1 ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448 uri.size() == 2)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 DcmTagKey tag;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451 ParseTagAndGroup(tag, uri[0]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement())
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 // Go down in the tag hierarchy according to the URI
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 for (size_t pos = 0; pos < uri.size() / 2; pos++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 size_t index;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 try
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 catch (boost::bad_lexical_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 DcmTagKey k;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475 DcmItem *child = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 ParseTagAndGroup(k, uri[2 * pos]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 if (!dicom->findAndGetSequenceItem(k, child, index).good() ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478 child == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 dicom = child;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 // We have reached the end of the URI
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 if (uri.size() % 2 == 0)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 SendPathValueForDictionary(output, *dicom);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 void ParsedDicomFile::Remove(const DicomTag& tag)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
500 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
501
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 DcmTagKey key(tag.GetGroup(), tag.GetElement());
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
503 DcmElement* element = pimpl_->file_->getDataset()->remove(key);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 if (element != NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 delete element;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
512 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
514 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
515
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
516 DcmDataset& dataset = *pimpl_->file_->getDataset();
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
517
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
518 // Loop over the dataset to detect its private tags
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519 typedef std::list<DcmElement*> Tags;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520 Tags privateTags;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
522 for (unsigned long i = 0; i < dataset.card(); i++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 DcmElement* element = dataset.getElement(i);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525 DcmTag tag(element->getTag());
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
526
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
527 // Is this a private tag?
1694
06d579e82bb8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1693
diff changeset
528 if (tag.isPrivate())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
529 {
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
530 bool remove = true;
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
531
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
532 // Check whether this private tag is to be kept
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
533 if (toKeep != NULL)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
534 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
535 DicomTag tmp = FromDcmtkBridge::Convert(tag);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
536 if (toKeep->find(tmp) != toKeep->end())
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
537 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
538 remove = false; // Keep it
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
539 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
540 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
541
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
542 if (remove)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
543 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
544 privateTags.push_back(element);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
545 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
546 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
547 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
548
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
549 // Loop over the detected private tags to remove them
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
550 for (Tags::iterator it = privateTags.begin();
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551 it != privateTags.end(); ++it)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
552 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
553 DcmElement* tmp = dataset.remove(*it);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
554 if (tmp != NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
556 delete tmp;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
557 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
558 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
559 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
560
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
561
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
562 static void InsertInternal(DcmDataset& dicom,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
563 DcmElement* element)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
565 OFCondition cond = dicom.insert(element, false, false);
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
566 if (!cond.good())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
568 // This field already exists
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
569 delete element;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
570 throw OrthancException(ErrorCode_InternalError);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
571 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
575 void ParsedDicomFile::Insert(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
576 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
577 bool decodeDataUriScheme)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
578 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
579 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
580
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
581 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding()));
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
582 InsertInternal(*pimpl_->file_->getDataset(), element.release());
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
583 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
584
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
585
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
586 static void ReplaceInternal(DcmDataset& dicom,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
587 std::auto_ptr<DcmElement>& element,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
588 DicomReplaceMode mode)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
589 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
590 const DcmTagKey& tag = element->getTag();
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
591
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
592 if (!dicom.findAndDeleteElement(tag).good())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
593 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
594 // This field does not exist, act wrt. the specified "mode"
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
595 switch (mode)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
597 case DicomReplaceMode_InsertIfAbsent:
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
598 break;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600 case DicomReplaceMode_ThrowIfAbsent:
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
601 throw OrthancException(ErrorCode_InexistentItem);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603 case DicomReplaceMode_IgnoreIfAbsent:
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
606 }
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
607
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
608 // Either the tag was not existing, or the replace mode was set to
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
609 // "InsertIfAbsent"
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
610 InsertInternal(dicom, element.release());
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
611 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
612
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
613
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
614 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
615 const std::string& utf8Value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
616 bool decodeDataUriScheme)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
617 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
618 if (tag != DICOM_TAG_SOP_CLASS_UID &&
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
619 tag != DICOM_TAG_SOP_INSTANCE_UID)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
620 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
621 return;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
622 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
623
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
624 std::string binary;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
625 const std::string* decoded = &utf8Value;
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
626
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
627 if (decodeDataUriScheme &&
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
628 boost::starts_with(utf8Value, "data:application/octet-stream;base64,"))
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
629 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
630 std::string mime;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
631 Toolbox::DecodeDataUriScheme(mime, binary, utf8Value);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
632 decoded = &binary;
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
633 }
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
634 else
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
635 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
636 Encoding encoding = GetEncoding();
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
637 if (GetEncoding() != Encoding_Utf8)
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
638 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
639 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding);
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
640 decoded = &binary;
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
641 }
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
642 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
643
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
644 /**
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
645 * dcmodify will automatically correct 'Media Storage SOP Class
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
646 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
647 * you make changes to the related tags in the dataset ('SOP Class
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
648 * UID' and 'SOP Instance UID') via insert or modify mode
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
649 * options. You can disable this behaviour by using the -nmu
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
650 * option.
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
651 **/
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
652
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
653 if (tag == DICOM_TAG_SOP_CLASS_UID)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
654 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
655 Replace(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded, DicomReplaceMode_InsertIfAbsent);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
656 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
657
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
658 if (tag == DICOM_TAG_SOP_INSTANCE_UID)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
659 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
660 Replace(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded, DicomReplaceMode_InsertIfAbsent);
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
661 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
662 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
663
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
664
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
665 void ParsedDicomFile::Replace(const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
666 const std::string& utf8Value,
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
667 DicomReplaceMode mode)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
668 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
669 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
670
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
671 std::auto_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag));
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
672 FromDcmtkBridge::FillElementWithString(*element, tag, utf8Value, false, GetEncoding());
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
673 ReplaceInternal(*pimpl_->file_->getDataset(), element, mode);
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
674 UpdateStorageUid(tag, utf8Value, false);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
675 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
676
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
677
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
678 void ParsedDicomFile::Replace(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
679 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
680 bool decodeDataUriScheme,
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
681 DicomReplaceMode mode)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
682 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
683 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
684
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
685 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding()));
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
686 ReplaceInternal(*pimpl_->file_->getDataset(), element, mode);
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
687
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
688 if (tag == DICOM_TAG_SOP_CLASS_UID ||
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
689 tag == DICOM_TAG_SOP_INSTANCE_UID)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
690 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
691 if (value.type() != Json::stringValue)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
692 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
693 throw OrthancException(ErrorCode_BadParameterType);
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
694 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
695
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
696 UpdateStorageUid(tag, value.asString(), decodeDataUriScheme);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
697 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
698 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
699
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
700
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
701 void ParsedDicomFile::Answer(RestApiOutput& output)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
702 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
703 std::string serialized;
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
704 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *pimpl_->file_->getDataset()))
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
705 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
706 output.AnswerBuffer(serialized, CONTENT_TYPE_OCTET_STREAM);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
707 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
708 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
709
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
710
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
711
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
712 bool ParsedDicomFile::GetTagValue(std::string& value,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
713 const DicomTag& tag)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
714 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
715 DcmTagKey k(tag.GetGroup(), tag.GetElement());
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
716 DcmDataset& dataset = *pimpl_->file_->getDataset();
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
717
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
718 if (tag.IsPrivate() ||
1655
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1641
diff changeset
719 FromDcmtkBridge::IsUnknownTag(tag) ||
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
720 tag == DICOM_TAG_PIXEL_DATA ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
721 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
722 {
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
723 const Uint8* data = NULL; // This is freed in the destructor of the dataset
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
724 long unsigned int count = 0;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
725
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
726 if (dataset.findAndGetUint8Array(k, data, &count).good())
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
727 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
728 if (count > 0)
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
729 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
730 assert(data != NULL);
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
731 value.assign(reinterpret_cast<const char*>(data), count);
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
732 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
733 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
734 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
735 value.clear();
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
736 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
737
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
738 return true;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
739 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
740 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
741 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
742 return false;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
743 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
744 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
745 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
746 {
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
747 DcmElement* element = NULL;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
748 if (!dataset.findAndGetElement(k, element).good() ||
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
749 element == NULL)
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
750 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
751 return false;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
752 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
753
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
754 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement
1929
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
755 (*element, DicomToJsonFlags_Default,
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
756 ORTHANC_MAXIMUM_TAG_LENGTH, GetEncoding()));
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
757
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
758 if (v.get() == NULL ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
759 v->IsNull())
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
760 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
761 value = "";
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
762 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
763 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
764 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
765 // TODO v->IsBinary()
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
766 value = v->GetContent();
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
767 }
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
768
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
769 return true;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
770 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
771 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
772
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
773
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
774 DicomInstanceHasher ParsedDicomFile::GetHasher()
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
775 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
776 std::string patientId, studyUid, seriesUid, instanceUid;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
777
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
778 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID) ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
779 !GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
780 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
781 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID))
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
782 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
783 throw OrthancException(ErrorCode_BadFileFormat);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
784 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
785
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
786 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
787 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
788
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
789
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
790 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
791 {
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
792 FromDcmtkBridge::SaveToMemoryBuffer(buffer, *pimpl_->file_->getDataset());
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
793 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
794
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
795
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
796 void ParsedDicomFile::SaveToFile(const std::string& path)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
797 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
798 // TODO Avoid using a temporary memory buffer, write directly on disk
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
799 std::string content;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
800 SaveToMemoryBuffer(content);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
801 Toolbox::WriteFile(content, path);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
802 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
803
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
804
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
805 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
806 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
807 pimpl_->file_.reset(new DcmFileFormat);
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
808
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
809 if (createIdentifiers)
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
810 {
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
811 Replace(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient));
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
812 Replace(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study));
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
813 Replace(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series));
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
814 Replace(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
815 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
816 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
817
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
818
1787
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
819 ParsedDicomFile::ParsedDicomFile(const DicomMap& map) : pimpl_(new PImpl)
1786
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
820 {
1787
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
821 std::auto_ptr<DcmDataset> dataset(ToDcmtkBridge::Convert(map));
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
822
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
823 // NOTE: This implies an unnecessary memory copy of the dataset, but no way to get around
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
824 // http://support.dcmtk.org/redmine/issues/544
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
825 std::auto_ptr<DcmFileFormat> fileFormat(new DcmFileFormat(dataset.get()));
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
826
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
827 pimpl_->file_.reset(fileFormat.release());
1786
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
828 }
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
829
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
830
1800
30e97a1f4093 callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
831 ParsedDicomFile::ParsedDicomFile(const void* content,
30e97a1f4093 callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
832 size_t size) : pimpl_(new PImpl)
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
833 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
834 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
835 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
836
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
837 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl)
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
838 {
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
839 if (content.size() == 0)
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
840 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
841 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
842 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
843 else
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
844 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
845 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size()));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
846 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
847 }
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
848
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
849
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
850 ParsedDicomFile::ParsedDicomFile(ParsedDicomFile& other) :
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
851 pimpl_(new PImpl)
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
852 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
853 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.pimpl_->file_->clone()));
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
854
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
855 // Create a new instance-level identifier
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
856 Replace(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
857 }
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
858
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
859
1788
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
860 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl)
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
861 {
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
862 pimpl_->file_.reset(new DcmFileFormat(&dicom));
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
863 }
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
864
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
865
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
866 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl)
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
867 {
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
868 pimpl_->file_.reset(new DcmFileFormat(dicom));
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
869 }
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
870
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
871
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
872 ParsedDicomFile::~ParsedDicomFile()
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
873 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
874 delete pimpl_;
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
875 }
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
876
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
877
1824
b530c3dfe2a6 refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
878 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
879 {
1788
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
880 return *pimpl_->file_.get();
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
881 }
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
882
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
883
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
884 ParsedDicomFile* ParsedDicomFile::Clone()
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
885 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
886 return new ParsedDicomFile(*this);
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
887 }
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
888
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
889
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
890 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme)
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
891 {
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
892 std::string mime, content;
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
893 Toolbox::DecodeDataUriScheme(mime, content, dataUriScheme);
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
894 Toolbox::ToLowerCase(mime);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
895
1781
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
896 if (mime == "image/png" ||
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
897 mime == "image/jpeg")
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
898 {
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
899 EmbedImage(mime, content);
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
900 }
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
901 else if (mime == "application/pdf")
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
902 {
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
903 EmbedPdf(content);
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
904 }
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
905 else
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
906 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
907 LOG(ERROR) << "Unsupported MIME type for the content of a new DICOM file: " << mime;
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
908 throw OrthancException(ErrorCode_NotImplemented);
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
909 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
910 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
911
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
912
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
913 void ParsedDicomFile::EmbedImage(const std::string& mime,
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
914 const std::string& content)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
915 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
916 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
917
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
918 if (mime == "image/png")
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
919 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
920 PngReader reader;
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
921 reader.ReadFromMemory(content);
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
922 EmbedImage(reader);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
923 }
1781
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
924 else if (mime == "image/jpeg")
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
925 {
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
926 JpegReader reader;
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
927 reader.ReadFromMemory(content);
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
928 EmbedImage(reader);
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
929 }
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
930 else
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
931 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
932 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
933 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
934 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
935
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
936
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
937 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
938 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
939 if (accessor.GetFormat() != PixelFormat_Grayscale8 &&
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
940 accessor.GetFormat() != PixelFormat_Grayscale16 &&
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
941 accessor.GetFormat() != PixelFormat_SignedGrayscale16 &&
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
942 accessor.GetFormat() != PixelFormat_RGB24 &&
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
943 accessor.GetFormat() != PixelFormat_RGBA32)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
944 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
945 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
946 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
947
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
948 if (accessor.GetFormat() == PixelFormat_RGBA32)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
949 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
950 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM";
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
951 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
952
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
953 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
954
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
955 Remove(DICOM_TAG_PIXEL_DATA);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
956 Replace(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth()));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
957 Replace(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight()));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
958 Replace(DICOM_TAG_SAMPLES_PER_PIXEL, "1");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
959 Replace(DICOM_TAG_NUMBER_OF_FRAMES, "1");
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
960
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
961 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16)
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
962 {
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
963 Replace(DICOM_TAG_PIXEL_REPRESENTATION, "1");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
964 }
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
965 else
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
966 {
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
967 Replace(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
968 }
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
969
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
970 Replace(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
971 Replace(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
972
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
973 unsigned int bytesPerPixel = 0;
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
974
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
975 switch (accessor.GetFormat())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
976 {
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
977 case PixelFormat_Grayscale8:
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
978 Replace(DICOM_TAG_BITS_ALLOCATED, "8");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
979 Replace(DICOM_TAG_BITS_STORED, "8");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
980 Replace(DICOM_TAG_HIGH_BIT, "7");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
981 bytesPerPixel = 1;
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
982 break;
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
983
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
984 case PixelFormat_RGB24:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
985 case PixelFormat_RGBA32:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
986 Replace(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
987 Replace(DICOM_TAG_SAMPLES_PER_PIXEL, "3");
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
988 Replace(DICOM_TAG_BITS_ALLOCATED, "8");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
989 Replace(DICOM_TAG_BITS_STORED, "8");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
990 Replace(DICOM_TAG_HIGH_BIT, "7");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
991 bytesPerPixel = 3;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
992 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
993
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
994 case PixelFormat_Grayscale16:
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
995 case PixelFormat_SignedGrayscale16:
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
996 Replace(DICOM_TAG_BITS_ALLOCATED, "16");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
997 Replace(DICOM_TAG_BITS_STORED, "16");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
998 Replace(DICOM_TAG_HIGH_BIT, "15");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
999 bytesPerPixel = 2;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1000 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1001
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1002 default:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1003 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1004 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1005
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1006 assert(bytesPerPixel != 0);
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1007
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1008 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(),
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1009 DICOM_TAG_PIXEL_DATA.GetElement());
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1010
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1011 std::auto_ptr<DcmPixelData> pixels(new DcmPixelData(key));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1012
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1013 unsigned int pitch = accessor.GetWidth() * bytesPerPixel;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1014 Uint8* target = NULL;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1015 pixels->createUint8Array(accessor.GetHeight() * pitch, target);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1016
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1017 for (unsigned int y = 0; y < accessor.GetHeight(); y++)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1018 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1019 switch (accessor.GetFormat())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1020 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1021 case PixelFormat_RGB24:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1022 case PixelFormat_Grayscale8:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1023 case PixelFormat_Grayscale16:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1024 case PixelFormat_SignedGrayscale16:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1025 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1026 memcpy(target, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1027 target += pitch;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1028 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1029 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1030
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1031 case PixelFormat_RGBA32:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1032 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1033 // The alpha channel is not supported by the DICOM standard
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1034 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1035 for (unsigned int x = 0; x < accessor.GetWidth(); x++, target += 3, source += 4)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1036 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1037 target[0] = source[0];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1038 target[1] = source[1];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1039 target[2] = source[2];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1040 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1041
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1042 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1043 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1044
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1045 default:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1046 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1047 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1048 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1049
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1050 if (!pimpl_->file_->getDataset()->insert(pixels.release(), false, false).good())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1051 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1052 throw OrthancException(ErrorCode_InternalError);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1053 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1054 }
874
87791ebc1f50 download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
1055
87791ebc1f50 download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
1056
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1057 Encoding ParsedDicomFile::GetEncoding() const
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1058 {
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1059 return FromDcmtkBridge::DetectEncoding(*pimpl_->file_->getDataset(),
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1060 Configuration::GetDefaultEncoding());
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1061 }
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1062
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1063
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1064 void ParsedDicomFile::SetEncoding(Encoding encoding)
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1065 {
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1066 if (encoding == Encoding_Windows1251)
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1067 {
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1068 // This Cyrillic codepage is not officially supported by the
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1069 // DICOM standard. Do not set the SpecificCharacterSet tag.
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1070 return;
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1071 }
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1072
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
1073 std::string s = GetDicomSpecificCharacterSet(encoding);
1091
a66224eec125 encoding tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1090
diff changeset
1074 Replace(DICOM_TAG_SPECIFIC_CHARACTER_SET, s, DicomReplaceMode_InsertIfAbsent);
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1075 }
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1076
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1662
diff changeset
1077 void ParsedDicomFile::ToJson(Json::Value& target,
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1662
diff changeset
1078 DicomToJsonFormat format,
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1079 DicomToJsonFlags flags,
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1662
diff changeset
1080 unsigned int maxStringLength)
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1113
diff changeset
1081 {
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1082 FromDcmtkBridge::ToJson(target, *pimpl_->file_->getDataset(),
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1083 format, flags, maxStringLength,
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1084 Configuration::GetDefaultEncoding());
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1113
diff changeset
1085 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1086
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1087
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1088 void ParsedDicomFile::HeaderToJson(Json::Value& target,
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1089 DicomToJsonFormat format)
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1090 {
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1091 FromDcmtkBridge::ToJson(target, *pimpl_->file_->getMetaInfo(), format, DicomToJsonFlags_None, 0);
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1092 }
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1093
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1094
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1095 bool ParsedDicomFile::HasTag(const DicomTag& tag) const
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1096 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1097 DcmTag key(tag.GetGroup(), tag.GetElement());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1098 return pimpl_->file_->getDataset()->tagExists(key);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1099 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1100
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1101
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1102 void ParsedDicomFile::EmbedPdf(const std::string& pdf)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1103 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1104 if (pdf.size() < 5 || // (*)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1105 strncmp("%PDF-", pdf.c_str(), 5) != 0)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1106 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1107 LOG(ERROR) << "Not a PDF file";
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1108 throw OrthancException(ErrorCode_BadFileFormat);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1109 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1110
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1111 Replace(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1112 Replace(FromDcmtkBridge::Convert(DCM_Modality), "OT");
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1113 Replace(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD");
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1114 Replace(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), "application/pdf");
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
1115 //Replace(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1116
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1117 std::auto_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument));
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1118
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1119 size_t s = pdf.size();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1120 if (s & 1)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1121 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1122 // The size of the buffer must be even
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1123 s += 1;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1124 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1125
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1126 Uint8* bytes = NULL;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1127 OFCondition result = element->createUint8Array(s, bytes);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1128 if (!result.good() || bytes == NULL)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1129 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1130 throw OrthancException(ErrorCode_NotEnoughMemory);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1131 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1132
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1133 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) )
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1134 bytes[s - 1] = 0;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1135
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1136 memcpy(bytes, pdf.c_str(), pdf.size());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1137
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1138 DcmPolymorphOBOW* obj = element.release();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1139 result = pimpl_->file_->getDataset()->insert(obj);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1140
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1141 if (!result.good())
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1142 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1143 delete obj;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1144 throw OrthancException(ErrorCode_NotEnoughMemory);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1145 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1146 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1147
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1148
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1149 bool ParsedDicomFile::ExtractPdf(std::string& pdf)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1150 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1151 std::string sop, mime;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1152
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1153 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1154 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1155 sop != UID_EncapsulatedPDFStorage ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1156 mime != "application/pdf")
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1157 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1158 return false;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1159 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1160
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1161 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT))
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1162 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1163 return false;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1164 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1165
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1166 // Strip the possible pad byte at the end of file, because the
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1167 // encapsulated documents must always have an even length. The PDF
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1168 // format expects files to end with %%EOF followed by CR/LF. If
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1169 // the last character of the file is not a CR or LF, we assume it
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1170 // is a pad byte and remove it.
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1171 if (pdf.size() > 0)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1172 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1173 char last = *pdf.rbegin();
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1174
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1175 if (last != 10 && last != 13)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1176 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1177 pdf.resize(pdf.size() - 1);
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1178 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1179 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1180
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1181 return true;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1182 }
1662
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1183
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1184
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1185 void ParsedDicomFile::Convert(DicomMap& tags)
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1186 {
1929
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
1187 FromDcmtkBridge::Convert(tags, *pimpl_->file_->getDataset(),
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
1188 ORTHANC_MAXIMUM_TAG_LENGTH,
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1189 Configuration::GetDefaultEncoding());
1662
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1190 }
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1191
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1192
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1193 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json,
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1194 DicomFromJsonFlags flags)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1195 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1196 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1197 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1198
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1199 std::auto_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers));
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1200 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, Configuration::GetDefaultEncoding()));
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1201
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1202 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1203
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1204 for (size_t i = 0; i < tags.size(); i++)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1205 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1206 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1207 const Json::Value& value = json[tags[i]];
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1208
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1209 if (tag == DICOM_TAG_PIXEL_DATA ||
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1210 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1211 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1212 if (value.type() != Json::stringValue)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1213 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1214 throw OrthancException(ErrorCode_BadRequest);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1215 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1216 else
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1217 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1218 result->EmbedContent(value.asString());
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1219 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1220 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1221 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1222 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1223 result->Replace(tag, value, decodeDataUriScheme);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1224 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1225 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1226
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1227 return result.release();
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1228 }
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1229
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1230
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1231 void ParsedDicomFile::GetRawFrame(std::string& target,
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1232 std::string& mime,
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1233 unsigned int frameId)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1234 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1235 if (pimpl_->frameIndex_.get() == NULL)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1236 {
1956
fc16ee04e71b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
1237 pimpl_->frameIndex_.reset(new DicomFrameIndex(*pimpl_->file_));
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1238 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1239
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1240 pimpl_->frameIndex_->GetRawFrame(target, frameId);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1241
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1242 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1243 switch (transferSyntax)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1244 {
1946
40b7a0176305 fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
1245 case EXS_JPEGProcess1:
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1246 mime = "image/jpeg";
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1247 break;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1248
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1249 case EXS_JPEG2000LosslessOnly:
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1250 case EXS_JPEG2000:
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1251 mime = "image/jp2";
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1252
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1253 default:
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1254 mime = "application/octet-stream";
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1255 break;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1256 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1257 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1258
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1259
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1260 void ParsedDicomFile::InvalidateCache()
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1261 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1262 pimpl_->frameIndex_.reset(NULL);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1263 }
1950
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1264
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1265
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1266 unsigned int ParsedDicomFile::GetFramesCount() const
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1267 {
1956
fc16ee04e71b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
1268 return DicomFrameIndex::GetFramesCount(*pimpl_->file_);
1950
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1269 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1270 }