Mercurial > hg > orthanc
annotate OrthancServer/ServerJobs/ArchiveJob.cpp @ 2912:ab03dae59d6e
place Boost include directories at highest priority
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 31 Oct 2018 14:14:16 +0100 |
| parents | ea7aea6f6a95 |
| children | bbfd95a0c429 |
| rev | line source |
|---|---|
| 2632 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
| 5 * Copyright (C) 2017-2018 Osimis S.A., Belgium | |
| 6 * | |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #include "../PrecompiledHeadersServer.h" | |
| 35 #include "ArchiveJob.h" | |
| 36 | |
| 37 #include "../../Core/Compression/HierarchicalZipWriter.h" | |
| 38 #include "../../Core/DicomParsing/DicomDirWriter.h" | |
| 39 #include "../../Core/Logging.h" | |
| 40 #include "../../Core/OrthancException.h" | |
| 41 | |
| 42 #include <stdio.h> | |
| 43 | |
| 44 #if defined(_MSC_VER) | |
| 45 #define snprintf _snprintf | |
| 46 #endif | |
| 47 | |
| 48 static const uint64_t MEGA_BYTES = 1024 * 1024; | |
| 49 static const uint64_t GIGA_BYTES = 1024 * 1024 * 1024; | |
| 50 static const char* MEDIA_IMAGES_FOLDER = "IMAGES"; | |
| 51 | |
| 52 namespace Orthanc | |
| 53 { | |
| 54 static bool IsZip64Required(uint64_t uncompressedSize, | |
| 55 unsigned int countInstances) | |
| 56 { | |
| 57 static const uint64_t SAFETY_MARGIN = 64 * MEGA_BYTES; // Should be large enough to hold DICOMDIR | |
| 58 static const unsigned int FILES_MARGIN = 10; | |
| 59 | |
| 60 /** | |
| 61 * Determine whether ZIP64 is required. Original ZIP format can | |
| 62 * store up to 2GB of data (some implementation supporting up to | |
| 63 * 4GB of data), and up to 65535 files. | |
| 64 * https://en.wikipedia.org/wiki/Zip_(file_format)#ZIP64 | |
| 65 **/ | |
| 66 | |
| 67 const bool isZip64 = (uncompressedSize >= 2 * GIGA_BYTES - SAFETY_MARGIN || | |
| 68 countInstances >= 65535 - FILES_MARGIN); | |
| 69 | |
| 70 LOG(INFO) << "Creating a ZIP file with " << countInstances << " files of size " | |
| 71 << (uncompressedSize / MEGA_BYTES) << "MB using the " | |
| 72 << (isZip64 ? "ZIP64" : "ZIP32") << " file format"; | |
| 73 | |
| 74 return isZip64; | |
| 75 } | |
| 76 | |
| 77 | |
| 78 class ArchiveJob::ResourceIdentifiers : public boost::noncopyable | |
| 79 { | |
| 80 private: | |
| 81 ResourceType level_; | |
| 82 std::string patient_; | |
| 83 std::string study_; | |
| 84 std::string series_; | |
| 85 std::string instance_; | |
| 86 | |
| 87 static void GoToParent(ServerIndex& index, | |
| 88 std::string& current) | |
| 89 { | |
| 90 std::string tmp; | |
| 91 | |
| 92 if (index.LookupParent(tmp, current)) | |
| 93 { | |
| 94 current = tmp; | |
| 95 } | |
| 96 else | |
| 97 { | |
| 98 throw OrthancException(ErrorCode_UnknownResource); | |
| 99 } | |
| 100 } | |
| 101 | |
| 102 | |
| 103 public: | |
| 104 ResourceIdentifiers(ServerIndex& index, | |
| 105 const std::string& publicId) | |
| 106 { | |
| 107 if (!index.LookupResourceType(level_, publicId)) | |
| 108 { | |
| 109 throw OrthancException(ErrorCode_UnknownResource); | |
| 110 } | |
| 111 | |
| 112 std::string current = publicId;; | |
| 113 switch (level_) // Do not add "break" below! | |
| 114 { | |
| 115 case ResourceType_Instance: | |
| 116 instance_ = current; | |
| 117 GoToParent(index, current); | |
| 118 | |
| 119 case ResourceType_Series: | |
| 120 series_ = current; | |
| 121 GoToParent(index, current); | |
| 122 | |
| 123 case ResourceType_Study: | |
| 124 study_ = current; | |
| 125 GoToParent(index, current); | |
| 126 | |
| 127 case ResourceType_Patient: | |
| 128 patient_ = current; | |
| 129 break; | |
| 130 | |
| 131 default: | |
| 132 throw OrthancException(ErrorCode_InternalError); | |
| 133 } | |
| 134 } | |
| 135 | |
| 136 ResourceType GetLevel() const | |
| 137 { | |
| 138 return level_; | |
| 139 } | |
| 140 | |
| 141 const std::string& GetIdentifier(ResourceType level) const | |
| 142 { | |
| 143 // Some sanity check to ensure enumerations are not altered | |
| 144 assert(ResourceType_Patient < ResourceType_Study); | |
| 145 assert(ResourceType_Study < ResourceType_Series); | |
| 146 assert(ResourceType_Series < ResourceType_Instance); | |
| 147 | |
| 148 if (level > level_) | |
| 149 { | |
| 150 throw OrthancException(ErrorCode_InternalError); | |
| 151 } | |
| 152 | |
| 153 switch (level) | |
| 154 { | |
| 155 case ResourceType_Patient: | |
| 156 return patient_; | |
| 157 | |
| 158 case ResourceType_Study: | |
| 159 return study_; | |
| 160 | |
| 161 case ResourceType_Series: | |
| 162 return series_; | |
| 163 | |
| 164 case ResourceType_Instance: | |
| 165 return instance_; | |
| 166 | |
| 167 default: | |
| 168 throw OrthancException(ErrorCode_InternalError); | |
| 169 } | |
| 170 } | |
| 171 }; | |
| 172 | |
| 173 | |
| 174 class ArchiveJob::IArchiveVisitor : public boost::noncopyable | |
| 175 { | |
| 176 public: | |
| 177 virtual ~IArchiveVisitor() | |
| 178 { | |
| 179 } | |
| 180 | |
| 181 virtual void Open(ResourceType level, | |
| 182 const std::string& publicId) = 0; | |
| 183 | |
| 184 virtual void Close() = 0; | |
| 185 | |
| 186 virtual void AddInstance(const std::string& instanceId, | |
| 187 const FileInfo& dicom) = 0; | |
| 188 }; | |
| 189 | |
| 190 | |
| 191 class ArchiveJob::ArchiveIndex : public boost::noncopyable | |
| 192 { | |
| 193 private: | |
| 194 struct Instance | |
| 195 { | |
| 196 std::string id_; | |
| 197 FileInfo dicom_; | |
| 198 | |
| 199 Instance(const std::string& id, | |
| 200 const FileInfo& dicom) : | |
| 201 id_(id), dicom_(dicom) | |
| 202 { | |
| 203 } | |
| 204 }; | |
| 205 | |
| 206 // A "NULL" value for ArchiveIndex indicates a non-expanded node | |
| 207 typedef std::map<std::string, ArchiveIndex*> Resources; | |
| 208 | |
| 209 ResourceType level_; | |
| 210 Resources resources_; // Only at patient/study/series level | |
| 211 std::list<Instance> instances_; // Only at instance level | |
| 212 | |
| 213 | |
| 214 void AddResourceToExpand(ServerIndex& index, | |
| 215 const std::string& id) | |
| 216 { | |
| 217 if (level_ == ResourceType_Instance) | |
| 218 { | |
| 219 FileInfo tmp; | |
| 220 if (index.LookupAttachment(tmp, id, FileContentType_Dicom)) | |
| 221 { | |
| 222 instances_.push_back(Instance(id, tmp)); | |
| 223 } | |
| 224 } | |
| 225 else | |
| 226 { | |
| 227 resources_[id] = NULL; | |
| 228 } | |
| 229 } | |
| 230 | |
| 231 | |
| 232 public: | |
| 233 ArchiveIndex(ResourceType level) : | |
| 234 level_(level) | |
| 235 { | |
| 236 } | |
| 237 | |
| 238 ~ArchiveIndex() | |
| 239 { | |
| 240 for (Resources::iterator it = resources_.begin(); | |
| 241 it != resources_.end(); ++it) | |
| 242 { | |
| 243 delete it->second; | |
| 244 } | |
| 245 } | |
| 246 | |
| 247 | |
| 248 void Add(ServerIndex& index, | |
| 249 const ResourceIdentifiers& resource) | |
| 250 { | |
| 251 const std::string& id = resource.GetIdentifier(level_); | |
| 252 Resources::iterator previous = resources_.find(id); | |
| 253 | |
| 254 if (level_ == ResourceType_Instance) | |
| 255 { | |
| 256 AddResourceToExpand(index, id); | |
| 257 } | |
| 258 else if (resource.GetLevel() == level_) | |
| 259 { | |
| 260 // Mark this resource for further expansion | |
| 261 if (previous != resources_.end()) | |
| 262 { | |
| 263 delete previous->second; | |
| 264 } | |
| 265 | |
| 266 resources_[id] = NULL; | |
| 267 } | |
| 268 else if (previous == resources_.end()) | |
| 269 { | |
| 270 // This is the first time we meet this resource | |
| 271 std::auto_ptr<ArchiveIndex> child(new ArchiveIndex(GetChildResourceType(level_))); | |
| 272 child->Add(index, resource); | |
| 273 resources_[id] = child.release(); | |
| 274 } | |
| 275 else if (previous->second != NULL) | |
| 276 { | |
| 277 previous->second->Add(index, resource); | |
| 278 } | |
| 279 else | |
| 280 { | |
| 281 // Nothing to do: This item is marked for further expansion | |
| 282 } | |
| 283 } | |
| 284 | |
| 285 | |
| 286 void Expand(ServerIndex& index) | |
| 287 { | |
| 288 if (level_ == ResourceType_Instance) | |
| 289 { | |
| 290 // Expanding an instance node makes no sense | |
| 291 return; | |
| 292 } | |
| 293 | |
| 294 for (Resources::iterator it = resources_.begin(); | |
| 295 it != resources_.end(); ++it) | |
| 296 { | |
| 297 if (it->second == NULL) | |
| 298 { | |
| 299 // This is resource is marked for expansion | |
| 300 std::list<std::string> children; | |
| 301 index.GetChildren(children, it->first); | |
| 302 | |
| 303 std::auto_ptr<ArchiveIndex> child(new ArchiveIndex(GetChildResourceType(level_))); | |
| 304 | |
| 305 for (std::list<std::string>::const_iterator | |
| 306 it2 = children.begin(); it2 != children.end(); ++it2) | |
| 307 { | |
| 308 child->AddResourceToExpand(index, *it2); | |
| 309 } | |
| 310 | |
| 311 it->second = child.release(); | |
| 312 } | |
| 313 | |
| 314 assert(it->second != NULL); | |
| 315 it->second->Expand(index); | |
| 316 } | |
| 317 } | |
| 318 | |
| 319 | |
| 320 void Apply(IArchiveVisitor& visitor) const | |
| 321 { | |
| 322 if (level_ == ResourceType_Instance) | |
| 323 { | |
| 324 for (std::list<Instance>::const_iterator | |
| 325 it = instances_.begin(); it != instances_.end(); ++it) | |
| 326 { | |
| 327 visitor.AddInstance(it->id_, it->dicom_); | |
| 328 } | |
| 329 } | |
| 330 else | |
| 331 { | |
| 332 for (Resources::const_iterator it = resources_.begin(); | |
| 333 it != resources_.end(); ++it) | |
| 334 { | |
| 335 assert(it->second != NULL); // There must have been a call to "Expand()" | |
| 336 visitor.Open(level_, it->first); | |
| 337 it->second->Apply(visitor); | |
| 338 visitor.Close(); | |
| 339 } | |
| 340 } | |
| 341 } | |
| 342 }; | |
| 343 | |
| 344 | |
| 345 | |
| 346 class ArchiveJob::ZipCommands : public boost::noncopyable | |
| 347 { | |
| 348 private: | |
| 349 enum Type | |
| 350 { | |
| 351 Type_OpenDirectory, | |
| 352 Type_CloseDirectory, | |
| 353 Type_WriteInstance | |
| 354 }; | |
| 355 | |
| 356 class Command : public boost::noncopyable | |
| 357 { | |
| 358 private: | |
| 359 Type type_; | |
| 360 std::string filename_; | |
| 361 std::string instanceId_; | |
| 362 FileInfo info_; | |
| 363 | |
| 364 public: | |
| 365 explicit Command(Type type) : | |
| 366 type_(type) | |
| 367 { | |
| 368 assert(type_ == Type_CloseDirectory); | |
| 369 } | |
| 370 | |
| 371 Command(Type type, | |
| 372 const std::string& filename) : | |
| 373 type_(type), | |
| 374 filename_(filename) | |
| 375 { | |
| 376 assert(type_ == Type_OpenDirectory); | |
| 377 } | |
| 378 | |
| 379 Command(Type type, | |
| 380 const std::string& filename, | |
| 381 const std::string& instanceId, | |
| 382 const FileInfo& info) : | |
| 383 type_(type), | |
| 384 filename_(filename), | |
| 385 instanceId_(instanceId), | |
| 386 info_(info) | |
| 387 { | |
| 388 assert(type_ == Type_WriteInstance); | |
| 389 } | |
| 390 | |
| 391 void Apply(HierarchicalZipWriter& writer, | |
| 392 ServerContext& context, | |
| 393 DicomDirWriter* dicomDir, | |
| 394 const std::string& dicomDirFolder) const | |
| 395 { | |
| 396 switch (type_) | |
| 397 { | |
| 398 case Type_OpenDirectory: | |
| 399 writer.OpenDirectory(filename_.c_str()); | |
| 400 break; | |
| 401 | |
| 402 case Type_CloseDirectory: | |
| 403 writer.CloseDirectory(); | |
| 404 break; | |
| 405 | |
| 406 case Type_WriteInstance: | |
| 407 { | |
| 408 std::string content; | |
| 409 | |
| 410 try | |
| 411 { | |
| 412 context.ReadAttachment(content, info_); | |
| 413 } | |
| 414 catch (OrthancException& e) | |
| 415 { | |
| 416 LOG(WARNING) << "An instance was removed after the job was issued: " << instanceId_; | |
| 417 return; | |
| 418 } | |
| 2636 | 419 |
| 420 //boost::this_thread::sleep(boost::posix_time::milliseconds(300)); | |
| 2632 | 421 |
| 422 writer.OpenFile(filename_.c_str()); | |
| 423 writer.Write(content); | |
| 424 | |
| 425 if (dicomDir != NULL) | |
| 426 { | |
| 427 ParsedDicomFile parsed(content); | |
| 428 dicomDir->Add(dicomDirFolder, filename_, parsed); | |
| 429 } | |
| 430 | |
| 431 break; | |
| 432 } | |
| 433 | |
| 434 default: | |
| 435 throw OrthancException(ErrorCode_InternalError); | |
| 436 } | |
| 437 } | |
| 438 }; | |
| 439 | |
| 440 std::deque<Command*> commands_; | |
| 441 uint64_t uncompressedSize_; | |
| 442 unsigned int instancesCount_; | |
| 443 | |
| 444 | |
| 445 void ApplyInternal(HierarchicalZipWriter& writer, | |
| 446 ServerContext& context, | |
| 447 size_t index, | |
| 448 DicomDirWriter* dicomDir, | |
| 449 const std::string& dicomDirFolder) const | |
| 450 { | |
| 451 if (index >= commands_.size()) | |
| 452 { | |
| 453 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 454 } | |
| 455 | |
| 456 commands_[index]->Apply(writer, context, dicomDir, dicomDirFolder); | |
| 457 } | |
| 458 | |
| 459 public: | |
| 460 ZipCommands() : | |
| 461 uncompressedSize_(0), | |
| 462 instancesCount_(0) | |
| 463 { | |
| 464 } | |
| 465 | |
| 466 ~ZipCommands() | |
| 467 { | |
| 468 for (std::deque<Command*>::iterator it = commands_.begin(); | |
| 469 it != commands_.end(); ++it) | |
| 470 { | |
| 471 assert(*it != NULL); | |
| 472 delete *it; | |
| 473 } | |
| 474 } | |
| 475 | |
| 476 size_t GetSize() const | |
| 477 { | |
| 478 return commands_.size(); | |
| 479 } | |
| 480 | |
| 481 unsigned int GetInstancesCount() const | |
| 482 { | |
| 483 return instancesCount_; | |
| 484 } | |
| 485 | |
| 486 uint64_t GetUncompressedSize() const | |
| 487 { | |
| 488 return uncompressedSize_; | |
| 489 } | |
| 490 | |
| 491 void Apply(HierarchicalZipWriter& writer, | |
| 492 ServerContext& context, | |
| 493 size_t index, | |
| 494 DicomDirWriter& dicomDir, | |
| 495 const std::string& dicomDirFolder) const | |
| 496 { | |
| 497 ApplyInternal(writer, context, index, &dicomDir, dicomDirFolder); | |
| 498 } | |
| 499 | |
| 500 void Apply(HierarchicalZipWriter& writer, | |
| 501 ServerContext& context, | |
| 502 size_t index) const | |
| 503 { | |
| 504 ApplyInternal(writer, context, index, NULL, ""); | |
| 505 } | |
| 506 | |
| 507 void AddOpenDirectory(const std::string& filename) | |
| 508 { | |
| 509 commands_.push_back(new Command(Type_OpenDirectory, filename)); | |
| 510 } | |
| 511 | |
| 512 void AddCloseDirectory() | |
| 513 { | |
| 514 commands_.push_back(new Command(Type_CloseDirectory)); | |
| 515 } | |
| 516 | |
| 517 void AddWriteInstance(const std::string& filename, | |
| 518 const std::string& instanceId, | |
| 519 const FileInfo& info) | |
| 520 { | |
| 521 commands_.push_back(new Command(Type_WriteInstance, filename, instanceId, info)); | |
| 522 instancesCount_ ++; | |
| 523 uncompressedSize_ += info.GetUncompressedSize(); | |
| 524 } | |
| 525 | |
| 526 bool IsZip64() const | |
| 527 { | |
| 528 return IsZip64Required(GetUncompressedSize(), GetInstancesCount()); | |
| 529 } | |
| 530 }; | |
| 531 | |
| 532 | |
| 533 | |
| 534 class ArchiveJob::ArchiveIndexVisitor : public IArchiveVisitor | |
| 535 { | |
| 536 private: | |
| 537 ZipCommands& commands_; | |
| 538 ServerContext& context_; | |
| 539 char instanceFormat_[24]; | |
| 540 unsigned int counter_; | |
| 541 | |
| 542 static std::string GetTag(const DicomMap& tags, | |
| 543 const DicomTag& tag) | |
| 544 { | |
| 545 const DicomValue* v = tags.TestAndGetValue(tag); | |
| 546 if (v != NULL && | |
| 547 !v->IsBinary() && | |
| 548 !v->IsNull()) | |
| 549 { | |
| 550 return v->GetContent(); | |
| 551 } | |
| 552 else | |
| 553 { | |
| 554 return ""; | |
| 555 } | |
| 556 } | |
| 557 | |
| 558 public: | |
| 559 ArchiveIndexVisitor(ZipCommands& commands, | |
| 560 ServerContext& context) : | |
| 561 commands_(commands), | |
| 562 context_(context), | |
| 563 counter_(0) | |
| 564 { | |
| 565 if (commands.GetSize() != 0) | |
| 566 { | |
| 567 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 568 } | |
| 569 | |
| 570 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%%08d.dcm"); | |
| 571 } | |
| 572 | |
| 573 virtual void Open(ResourceType level, | |
| 574 const std::string& publicId) | |
| 575 { | |
| 576 std::string path; | |
| 577 | |
| 578 DicomMap tags; | |
| 579 if (context_.GetIndex().GetMainDicomTags(tags, publicId, level, level)) | |
| 580 { | |
| 581 switch (level) | |
| 582 { | |
| 583 case ResourceType_Patient: | |
| 584 path = GetTag(tags, DICOM_TAG_PATIENT_ID) + " " + GetTag(tags, DICOM_TAG_PATIENT_NAME); | |
| 585 break; | |
| 586 | |
| 587 case ResourceType_Study: | |
| 588 path = GetTag(tags, DICOM_TAG_ACCESSION_NUMBER) + " " + GetTag(tags, DICOM_TAG_STUDY_DESCRIPTION); | |
| 589 break; | |
| 590 | |
| 591 case ResourceType_Series: | |
| 592 { | |
| 593 std::string modality = GetTag(tags, DICOM_TAG_MODALITY); | |
| 594 path = modality + " " + GetTag(tags, DICOM_TAG_SERIES_DESCRIPTION); | |
| 595 | |
| 596 if (modality.size() == 0) | |
| 597 { | |
| 598 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%%08d.dcm"); | |
| 599 } | |
| 600 else if (modality.size() == 1) | |
| 601 { | |
| 602 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%c%%07d.dcm", | |
| 603 toupper(modality[0])); | |
| 604 } | |
| 605 else if (modality.size() >= 2) | |
| 606 { | |
| 607 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%c%c%%06d.dcm", | |
| 608 toupper(modality[0]), toupper(modality[1])); | |
| 609 } | |
| 610 | |
| 611 counter_ = 0; | |
| 612 | |
| 613 break; | |
| 614 } | |
| 615 | |
| 616 default: | |
| 617 throw OrthancException(ErrorCode_InternalError); | |
| 618 } | |
| 619 } | |
| 620 | |
| 621 path = Toolbox::StripSpaces(Toolbox::ConvertToAscii(path)); | |
| 622 | |
| 623 if (path.empty()) | |
| 624 { | |
| 625 path = std::string("Unknown ") + EnumerationToString(level); | |
| 626 } | |
| 627 | |
| 628 commands_.AddOpenDirectory(path.c_str()); | |
| 629 } | |
| 630 | |
| 631 virtual void Close() | |
| 632 { | |
| 633 commands_.AddCloseDirectory(); | |
| 634 } | |
| 635 | |
| 636 virtual void AddInstance(const std::string& instanceId, | |
| 637 const FileInfo& dicom) | |
| 638 { | |
| 639 char filename[24]; | |
| 640 snprintf(filename, sizeof(filename) - 1, instanceFormat_, counter_); | |
| 641 counter_ ++; | |
| 642 | |
| 643 commands_.AddWriteInstance(filename, instanceId, dicom); | |
| 644 } | |
| 645 }; | |
| 646 | |
| 647 | |
| 648 class ArchiveJob::MediaIndexVisitor : public IArchiveVisitor | |
| 649 { | |
| 650 private: | |
| 651 ZipCommands& commands_; | |
| 652 ServerContext& context_; | |
| 653 unsigned int counter_; | |
| 654 | |
| 655 public: | |
| 656 MediaIndexVisitor(ZipCommands& commands, | |
| 657 ServerContext& context) : | |
| 658 commands_(commands), | |
| 659 context_(context), | |
| 660 counter_(0) | |
| 661 { | |
| 662 } | |
| 663 | |
| 664 virtual void Open(ResourceType level, | |
| 665 const std::string& publicId) | |
| 666 { | |
| 667 } | |
| 668 | |
| 669 virtual void Close() | |
| 670 { | |
| 671 } | |
| 672 | |
| 673 virtual void AddInstance(const std::string& instanceId, | |
| 674 const FileInfo& dicom) | |
| 675 { | |
| 676 // "DICOM restricts the filenames on DICOM media to 8 | |
| 677 // characters (some systems wrongly use 8.3, but this does not | |
| 678 // conform to the standard)." | |
| 679 std::string filename = "IM" + boost::lexical_cast<std::string>(counter_); | |
| 680 commands_.AddWriteInstance(filename, instanceId, dicom); | |
| 681 | |
| 682 counter_ ++; | |
| 683 } | |
| 684 }; | |
| 685 | |
| 686 | |
| 687 class ArchiveJob::ZipWriterIterator : public boost::noncopyable | |
| 688 { | |
| 689 private: | |
| 690 TemporaryFile& target_; | |
| 691 ServerContext& context_; | |
| 692 ZipCommands commands_; | |
| 693 std::auto_ptr<HierarchicalZipWriter> zip_; | |
| 694 std::auto_ptr<DicomDirWriter> dicomDir_; | |
| 695 bool isMedia_; | |
| 696 | |
| 697 public: | |
| 698 ZipWriterIterator(TemporaryFile& target, | |
| 699 ServerContext& context, | |
| 700 ArchiveIndex& archive, | |
| 701 bool isMedia, | |
| 702 bool enableExtendedSopClass) : | |
| 703 target_(target), | |
| 704 context_(context), | |
| 705 isMedia_(isMedia) | |
| 706 { | |
| 707 if (isMedia) | |
| 708 { | |
| 709 MediaIndexVisitor visitor(commands_, context); | |
| 710 archive.Expand(context.GetIndex()); | |
| 711 | |
| 712 commands_.AddOpenDirectory(MEDIA_IMAGES_FOLDER); | |
| 713 archive.Apply(visitor); | |
| 714 commands_.AddCloseDirectory(); | |
| 715 | |
| 716 dicomDir_.reset(new DicomDirWriter); | |
| 717 dicomDir_->EnableExtendedSopClass(enableExtendedSopClass); | |
| 718 } | |
| 719 else | |
| 720 { | |
| 721 ArchiveIndexVisitor visitor(commands_, context); | |
| 722 archive.Expand(context.GetIndex()); | |
| 723 archive.Apply(visitor); | |
| 724 } | |
| 725 | |
| 726 zip_.reset(new HierarchicalZipWriter(target.GetPath().c_str())); | |
| 727 zip_->SetZip64(commands_.IsZip64()); | |
| 728 } | |
| 729 | |
| 730 size_t GetStepsCount() const | |
| 731 { | |
| 732 return commands_.GetSize() + 1; | |
| 733 } | |
| 734 | |
| 735 void RunStep(size_t index) | |
| 736 { | |
| 737 if (index > commands_.GetSize()) | |
| 738 { | |
| 739 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 740 } | |
| 741 else if (index == commands_.GetSize()) | |
| 742 { | |
| 743 // Last step: Add the DICOMDIR | |
| 744 if (isMedia_) | |
| 745 { | |
| 746 assert(dicomDir_.get() != NULL); | |
| 747 std::string s; | |
| 748 dicomDir_->Encode(s); | |
| 749 | |
| 750 zip_->OpenFile("DICOMDIR"); | |
| 751 zip_->Write(s); | |
| 752 } | |
| 753 } | |
| 754 else | |
| 755 { | |
| 756 if (isMedia_) | |
| 757 { | |
| 758 assert(dicomDir_.get() != NULL); | |
| 759 commands_.Apply(*zip_, context_, index, *dicomDir_, MEDIA_IMAGES_FOLDER); | |
| 760 } | |
| 761 else | |
| 762 { | |
| 763 assert(dicomDir_.get() == NULL); | |
| 764 commands_.Apply(*zip_, context_, index); | |
| 765 } | |
| 766 } | |
| 767 } | |
| 768 | |
| 769 unsigned int GetInstancesCount() const | |
| 770 { | |
| 771 return commands_.GetInstancesCount(); | |
| 772 } | |
| 773 | |
| 774 uint64_t GetUncompressedSize() const | |
| 775 { | |
| 776 return commands_.GetUncompressedSize(); | |
| 777 } | |
| 778 }; | |
| 779 | |
| 780 | |
| 781 ArchiveJob::ArchiveJob(boost::shared_ptr<TemporaryFile>& target, | |
| 782 ServerContext& context, | |
| 783 bool isMedia, | |
| 784 bool enableExtendedSopClass) : | |
| 785 target_(target), | |
| 786 context_(context), | |
| 787 archive_(new ArchiveIndex(ResourceType_Patient)), // root | |
| 788 isMedia_(isMedia), | |
| 789 enableExtendedSopClass_(enableExtendedSopClass), | |
| 790 currentStep_(0), | |
| 791 instancesCount_(0), | |
| 792 uncompressedSize_(0) | |
| 793 { | |
| 794 if (target.get() == NULL) | |
| 795 { | |
| 796 throw OrthancException(ErrorCode_NullPointer); | |
| 797 } | |
| 798 } | |
| 799 | |
| 800 | |
| 801 void ArchiveJob::AddResource(const std::string& publicId) | |
| 802 { | |
| 803 if (writer_.get() != NULL) // Already started | |
| 804 { | |
| 805 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 806 } | |
| 807 | |
| 808 ResourceIdentifiers resource(context_.GetIndex(), publicId); | |
| 809 archive_->Add(context_.GetIndex(), resource); | |
| 810 } | |
| 811 | |
| 812 | |
|
2812
ea7aea6f6a95
improved naming of methods in IJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2730
diff
changeset
|
813 void ArchiveJob::Reset() |
| 2632 | 814 { |
| 815 LOG(ERROR) << "Cannot resubmit the creation of an archive"; | |
| 816 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 817 } | |
| 818 | |
| 819 | |
| 820 void ArchiveJob::Start() | |
| 821 { | |
| 822 if (writer_.get() != NULL) | |
| 823 { | |
| 824 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 825 } | |
| 826 | |
| 827 writer_.reset(new ZipWriterIterator(*target_, context_, *archive_, | |
| 828 isMedia_, enableExtendedSopClass_)); | |
| 829 | |
| 830 instancesCount_ = writer_->GetInstancesCount(); | |
| 831 uncompressedSize_ = writer_->GetUncompressedSize(); | |
| 832 } | |
| 833 | |
| 834 | |
|
2812
ea7aea6f6a95
improved naming of methods in IJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2730
diff
changeset
|
835 JobStepResult ArchiveJob::Step() |
| 2632 | 836 { |
| 837 assert(writer_.get() != NULL); | |
| 838 | |
| 839 if (target_.unique()) | |
| 840 { | |
| 841 LOG(WARNING) << "A client has disconnected while creating an archive"; | |
| 842 return JobStepResult::Failure(ErrorCode_NetworkProtocol); | |
| 843 } | |
| 844 | |
| 845 if (writer_->GetStepsCount() == 0) | |
| 846 { | |
| 2730 | 847 writer_.reset(); // Flush all the results |
| 2632 | 848 return JobStepResult::Success(); |
| 849 } | |
| 850 else | |
| 851 { | |
| 852 writer_->RunStep(currentStep_); | |
| 853 | |
| 854 currentStep_ ++; | |
| 855 | |
| 856 if (currentStep_ == writer_->GetStepsCount()) | |
| 857 { | |
| 2730 | 858 writer_.reset(); // Flush all the results |
| 2632 | 859 return JobStepResult::Success(); |
| 860 } | |
| 861 else | |
| 862 { | |
| 863 return JobStepResult::Continue(); | |
| 864 } | |
| 865 } | |
| 866 } | |
| 867 | |
| 868 | |
| 869 float ArchiveJob::GetProgress() | |
| 870 { | |
| 871 if (writer_.get() == NULL || | |
| 872 writer_->GetStepsCount() == 0) | |
| 873 { | |
| 874 return 1; | |
| 875 } | |
| 876 else | |
| 877 { | |
| 878 return (static_cast<float>(currentStep_) / | |
| 879 static_cast<float>(writer_->GetStepsCount() - 1)); | |
| 880 } | |
| 881 } | |
| 882 | |
| 883 | |
| 884 void ArchiveJob::GetJobType(std::string& target) | |
| 885 { | |
| 886 if (isMedia_) | |
| 887 { | |
| 888 target = "Media"; | |
| 889 } | |
| 890 else | |
| 891 { | |
| 892 target = "Archive"; | |
| 893 } | |
| 894 } | |
| 895 | |
| 896 | |
| 897 void ArchiveJob::GetPublicContent(Json::Value& value) | |
| 898 { | |
| 899 value["Description"] = description_; | |
| 900 value["InstancesCount"] = instancesCount_; | |
| 901 value["UncompressedSizeMB"] = | |
| 2643 | 902 static_cast<unsigned int>(uncompressedSize_ / MEGA_BYTES); |
| 2632 | 903 } |
| 904 } |