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annotate OrthancServer/ServerContext.cpp @ 676:aa5ca7a2166f

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experiments with pixel data
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 03 Jan 2014 17:49:31 +0100
parents 08eca5d86aad
children 2d0a347e8cfc
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2013 Medical Physics Department, CHU of Liege,
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4 * Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "ServerContext.h"
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34
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35 #include "../Core/HttpServer/FilesystemHttpSender.h"
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36 #include "../Core/Lua/LuaFunctionCall.h"
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37 #include "ServerToolbox.h"
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38
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39 #include <glog/logging.h>
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40 #include <EmbeddedResources.h>
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41
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42 #define ENABLE_DICOM_CACHE 1
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43
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44 static const char* RECEIVED_INSTANCE_FILTER = "ReceivedInstanceFilter";
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45
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46 static const size_t DICOM_CACHE_SIZE = 2;
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47
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48 /**
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49 * IMPORTANT: We make the assumption that the same instance of
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50 * FileStorage can be accessed from multiple threads. This seems OK
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51 * since the filesystem implements the required locking mechanisms,
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52 * but maybe a read-writer lock on the "FileStorage" could be
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53 * useful. Conversely, "ServerIndex" already implements mutex-based
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54 * locking.
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55 **/
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56
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57 namespace Orthanc
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58 {
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59 ServerContext::ServerContext(const boost::filesystem::path& storagePath,
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60 const boost::filesystem::path& indexPath) :
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61 storage_(storagePath.string()),
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62 index_(*this, indexPath.string()),
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63 accessor_(storage_),
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64 compressionEnabled_(false),
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65 provider_(*this),
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66 dicomCache_(provider_, DICOM_CACHE_SIZE)
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67 {
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68 lua_.Execute(Orthanc::EmbeddedResources::LUA_TOOLBOX);
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69 }
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70
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71 void ServerContext::SetCompressionEnabled(bool enabled)
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72 {
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73 if (enabled)
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74 LOG(WARNING) << "Disk compression is enabled";
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75 else
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76 LOG(WARNING) << "Disk compression is disabled";
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77
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78 compressionEnabled_ = enabled;
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79 }
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80
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81 void ServerContext::RemoveFile(const std::string& fileUuid)
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82 {
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83 storage_.Remove(fileUuid);
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84 }
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85
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86 StoreStatus ServerContext::Store(const char* dicomInstance,
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87 size_t dicomSize,
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88 const DicomMap& dicomSummary,
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89 const Json::Value& dicomJson,
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90 const std::string& remoteAet)
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91 {
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92 // Test if the instance must be filtered out
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93 if (lua_.IsExistingFunction(RECEIVED_INSTANCE_FILTER))
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94 {
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95 Json::Value simplified;
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96 SimplifyTags(simplified, dicomJson);
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97
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98 LuaFunctionCall call(lua_, RECEIVED_INSTANCE_FILTER);
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99 call.PushJSON(simplified);
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100 call.PushString(remoteAet);
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101
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102 if (!call.ExecutePredicate())
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103 {
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104 LOG(INFO) << "An incoming instance has been discarded by the filter";
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105 return StoreStatus_FilteredOut;
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106 }
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107 }
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108
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109 if (compressionEnabled_)
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110 {
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111 accessor_.SetCompressionForNextOperations(CompressionType_Zlib);
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112 }
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113 else
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114 {
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115 accessor_.SetCompressionForNextOperations(CompressionType_None);
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116 }
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117
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118 FileInfo dicomInfo = accessor_.Write(dicomInstance, dicomSize, FileContentType_Dicom);
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119 FileInfo jsonInfo = accessor_.Write(dicomJson.toStyledString(), FileContentType_Json);
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120
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121 ServerIndex::Attachments attachments;
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122 attachments.push_back(dicomInfo);
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123 attachments.push_back(jsonInfo);
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124
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125 StoreStatus status = index_.Store(dicomSummary, attachments, remoteAet);
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126
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127 if (status != StoreStatus_Success)
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128 {
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129 storage_.Remove(dicomInfo.GetUuid());
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130 storage_.Remove(jsonInfo.GetUuid());
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131 }
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132
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133 switch (status)
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134 {
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135 case StoreStatus_Success:
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136 LOG(INFO) << "New instance stored";
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137 break;
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138
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diff changeset
139 case StoreStatus_AlreadyStored:
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140 LOG(INFO) << "Already stored";
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141 break;
224
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142
397
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diff changeset
143 case StoreStatus_Failure:
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144 LOG(ERROR) << "Store failure";
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diff changeset
145 break;
224
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146
397
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diff changeset
147 default:
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148 // This should never happen
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149 break;
224
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150 }
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151
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152 return status;
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153 }
226
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diff changeset
154
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155
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156 void ServerContext::AnswerFile(RestApiOutput& output,
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157 const std::string& instancePublicId,
233
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diff changeset
158 FileContentType content)
226
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159 {
232
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160 FileInfo attachment;
236
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161 if (!index_.LookupAttachment(attachment, instancePublicId, content))
232
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162 {
236
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163 throw OrthancException(ErrorCode_InternalError);
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164 }
226
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diff changeset
165
236
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diff changeset
166 accessor_.SetCompressionForNextOperations(attachment.GetCompressionType());
320
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diff changeset
167
236
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diff changeset
168 std::auto_ptr<HttpFileSender> sender(accessor_.ConstructHttpFileSender(attachment.GetUuid()));
320
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169 sender->SetContentType("application/dicom");
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170 sender->SetDownloadFilename(instancePublicId + ".dcm");
236
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diff changeset
171 output.AnswerFile(*sender);
226
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diff changeset
172 }
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diff changeset
173
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diff changeset
174
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diff changeset
175 void ServerContext::ReadJson(Json::Value& result,
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176 const std::string& instancePublicId)
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177 {
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178 std::string s;
233
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179 ReadFile(s, instancePublicId, FileContentType_Json);
226
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180
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diff changeset
181 Json::Reader reader;
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182 if (!reader.parse(s, result))
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183 {
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184 throw OrthancException("Corrupted JSON file");
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185 }
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diff changeset
186 }
227
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diff changeset
187
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188
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189 void ServerContext::ReadFile(std::string& result,
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diff changeset
190 const std::string& instancePublicId,
233
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diff changeset
191 FileContentType content)
227
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diff changeset
192 {
232
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diff changeset
193 FileInfo attachment;
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diff changeset
194 if (!index_.LookupAttachment(attachment, instancePublicId, content))
227
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diff changeset
195 {
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diff changeset
196 throw OrthancException(ErrorCode_InternalError);
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diff changeset
197 }
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diff changeset
198
232
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diff changeset
199 accessor_.SetCompressionForNextOperations(attachment.GetCompressionType());
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diff changeset
200 accessor_.Read(result, attachment.GetUuid());
227
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diff changeset
201 }
285
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diff changeset
202
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diff changeset
203
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diff changeset
204 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId)
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diff changeset
205 {
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diff changeset
206 std::string content;
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diff changeset
207 context_.ReadFile(content, instancePublicId, FileContentType_Dicom);
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diff changeset
208 return new ParsedDicomFile(content);
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parents: 269
diff changeset
209 }
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parents: 269
diff changeset
210
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parents: 269
diff changeset
211
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parents: 269
diff changeset
212 ParsedDicomFile& ServerContext::GetDicomFile(const std::string& instancePublicId)
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parents: 269
diff changeset
213 {
291
4d7469f72a0b embedding of dicom dictionaries
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diff changeset
214 #if ENABLE_DICOM_CACHE == 0
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diff changeset
215 static std::auto_ptr<IDynamicObject> p;
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parents: 288
diff changeset
216 p.reset(provider_.Provide(instancePublicId));
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parents: 288
diff changeset
217 return dynamic_cast<ParsedDicomFile&>(*p);
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parents: 288
diff changeset
218 #else
285
4031f73fe0e4 access to the raw dicom tags
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diff changeset
219 return dynamic_cast<ParsedDicomFile&>(dicomCache_.Access(instancePublicId));
291
4d7469f72a0b embedding of dicom dictionaries
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diff changeset
220 #endif
285
4031f73fe0e4 access to the raw dicom tags
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parents: 269
diff changeset
221 }
304
4eea080e6e7a refactoring
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parents: 291
diff changeset
222
4eea080e6e7a refactoring
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parents: 291
diff changeset
223
4eea080e6e7a refactoring
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parents: 291
diff changeset
224 StoreStatus ServerContext::Store(std::string& resultPublicId,
4eea080e6e7a refactoring
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parents: 291
diff changeset
225 DcmFileFormat& dicomInstance,
4eea080e6e7a refactoring
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parents: 291
diff changeset
226 const char* dicomBuffer,
4eea080e6e7a refactoring
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parents: 291
diff changeset
227 size_t dicomSize)
4eea080e6e7a refactoring
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diff changeset
228 {
4eea080e6e7a refactoring
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diff changeset
229 DicomMap dicomSummary;
4eea080e6e7a refactoring
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diff changeset
230 FromDcmtkBridge::Convert(dicomSummary, *dicomInstance.getDataset());
4eea080e6e7a refactoring
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diff changeset
231
4eea080e6e7a refactoring
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diff changeset
232 DicomInstanceHasher hasher(dicomSummary);
4eea080e6e7a refactoring
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diff changeset
233 resultPublicId = hasher.HashInstance();
4eea080e6e7a refactoring
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parents: 291
diff changeset
234
4eea080e6e7a refactoring
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parents: 291
diff changeset
235 Json::Value dicomJson;
4eea080e6e7a refactoring
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diff changeset
236 FromDcmtkBridge::ToJson(dicomJson, *dicomInstance.getDataset());
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diff changeset
237
4eea080e6e7a refactoring
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parents: 291
diff changeset
238 StoreStatus status = StoreStatus_Failure;
4eea080e6e7a refactoring
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diff changeset
239 if (dicomSize > 0)
4eea080e6e7a refactoring
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diff changeset
240 {
4eea080e6e7a refactoring
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diff changeset
241 status = Store(dicomBuffer, dicomSize, dicomSummary, dicomJson, "");
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diff changeset
242 }
4eea080e6e7a refactoring
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parents: 291
diff changeset
243
4eea080e6e7a refactoring
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parents: 291
diff changeset
244 return status;
4eea080e6e7a refactoring
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parents: 291
diff changeset
245 }
4eea080e6e7a refactoring
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parents: 291
diff changeset
246
4eea080e6e7a refactoring
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parents: 291
diff changeset
247
4eea080e6e7a refactoring
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diff changeset
248 StoreStatus ServerContext::Store(std::string& resultPublicId,
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diff changeset
249 DcmFileFormat& dicomInstance)
4eea080e6e7a refactoring
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parents: 291
diff changeset
250 {
4eea080e6e7a refactoring
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diff changeset
251 std::string buffer;
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parents: 291
diff changeset
252 if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer, dicomInstance.getDataset()))
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parents: 291
diff changeset
253 {
4eea080e6e7a refactoring
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diff changeset
254 throw OrthancException(ErrorCode_InternalError);
4eea080e6e7a refactoring
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parents: 291
diff changeset
255 }
4eea080e6e7a refactoring
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parents: 291
diff changeset
256
4eea080e6e7a refactoring
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parents: 291
diff changeset
257 if (buffer.size() == 0)
4eea080e6e7a refactoring
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parents: 291
diff changeset
258 return Store(resultPublicId, dicomInstance, NULL, 0);
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parents: 291
diff changeset
259 else
4eea080e6e7a refactoring
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diff changeset
260 return Store(resultPublicId, dicomInstance, &buffer[0], buffer.size());
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parents: 291
diff changeset
261 }
4eea080e6e7a refactoring
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parents: 291
diff changeset
262
4eea080e6e7a refactoring
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parents: 291
diff changeset
263
4eea080e6e7a refactoring
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parents: 291
diff changeset
264 StoreStatus ServerContext::Store(std::string& resultPublicId,
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diff changeset
265 const char* dicomBuffer,
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diff changeset
266 size_t dicomSize)
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diff changeset
267 {
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diff changeset
268 ParsedDicomFile dicom(dicomBuffer, dicomSize);
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diff changeset
269 return Store(resultPublicId, dicom.GetDicom(), dicomBuffer, dicomSize);
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parents: 291
diff changeset
270 }
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parents: 291
diff changeset
271
224
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parents:
diff changeset
272 }