annotate OrthancServer/DicomModification.cpp @ 2140:aa4b8895cd23

reorganization
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 09 Nov 2016 16:12:47 +0100
parents b5d4f9c156ad
children 3b40ca7470cc
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
1288
6e7e5ed91c2d upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1279
diff changeset
4 * Department, University Hospital of Liege, Belgium
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 *
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 * This program is free software: you can redistribute it and/or
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * modify it under the terms of the GNU General Public License as
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * published by the Free Software Foundation, either version 3 of the
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * License, or (at your option) any later version.
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 *
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * In addition, as a special exception, the copyright holders of this
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * program give permission to link the code of its release with the
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * that use the same license as the "OpenSSL" library), and distribute
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * the linked executables. You must obey the GNU General Public License
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * in all respects for all of the code used other than "OpenSSL". If you
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * modify file(s) with this exception, you may extend this exception to
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * your version of the file(s), but you are not obligated to do so. If
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * you do not wish to do so, delete this exception statement from your
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * version. If you delete this exception statement from all source files
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 * in the program, then also delete it here.
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 *
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 * This program is distributed in the hope that it will be useful, but
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 * WITHOUT ANY WARRANTY; without even the implied warranty of
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 * General Public License for more details.
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 *
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 * You should have received a copy of the GNU General Public License
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 **/
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32
831
84513f2ee1f3 pch for unit tests and server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 824
diff changeset
33 #include "PrecompiledHeadersServer.h"
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 #include "DicomModification.h"
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
1486
f967bdf8534e refactoring to Logging.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
36 #include "../Core/Logging.h"
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 #include "../Core/OrthancException.h"
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 789
diff changeset
38 #include "FromDcmtkBridge.h"
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39
795
d466b3606aca refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
40 #include <memory> // For std::auto_ptr
d466b3606aca refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
41
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
42
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
43 static const std::string ORTHANC_DEIDENTIFICATION_METHOD = "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1";
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
44
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 namespace Orthanc
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 {
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
47 void DicomModification::RemoveInternal(const DicomTag& tag)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
48 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
49 Replacements::iterator it = replacements_.find(tag);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
50
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
51 if (it != replacements_.end())
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
52 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
53 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
54 replacements_.erase(it);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
55 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
56 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
57
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
58
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
59 void DicomModification::ReplaceInternal(const DicomTag& tag,
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
60 const Json::Value& value)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
61 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
62 Replacements::iterator it = replacements_.find(tag);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
63
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
64 if (it != replacements_.end())
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
65 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
66 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
67 it->second = NULL; // In the case of an exception during the clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
68 it->second = new Json::Value(value); // Clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
69 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
70 else
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
71 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
72 replacements_[tag] = new Json::Value(value); // Clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
73 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
74 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
75
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
76
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
77 void DicomModification::ClearReplacements()
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
78 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
79 for (Replacements::iterator it = replacements_.begin();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
80 it != replacements_.end(); ++it)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
81 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
82 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
83 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
84
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
85 replacements_.clear();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
86 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
87
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
88
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
89 void DicomModification::MarkNotOrthancAnonymization()
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
90 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
91 Replacements::iterator it = replacements_.find(DICOM_TAG_DEIDENTIFICATION_METHOD);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
92
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
93 if (it != replacements_.end() &&
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
94 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD)
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
95 {
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
96 delete it->second;
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
97 replacements_.erase(it);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
98 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
99 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
100
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
101
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102 void DicomModification::MapDicomIdentifier(ParsedDicomFile& dicom,
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
103 ResourceType level)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 std::auto_ptr<DicomTag> tag;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 switch (level)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
109 case ResourceType_Study:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
113 case ResourceType_Series:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
117 case ResourceType_Instance:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118 tag.reset(new DicomTag(DICOM_TAG_SOP_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 default:
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 throw OrthancException(ErrorCode_InternalError);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125 std::string original;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126 if (!dicom.GetTagValue(original, *tag))
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128 original = "";
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
130
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131 std::string mapped;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
132
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, original));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
134 if (previous == uidMap_.end())
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
135 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
137 uidMap_.insert(std::make_pair(std::make_pair(level, original), mapped));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139 else
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141 mapped = previous->second;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
144 dicom.Replace(*tag, mapped, false /* don't try and decode data URI scheme for UIDs */, DicomReplaceMode_InsertIfAbsent);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 }
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
146
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 DicomModification::DicomModification()
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149 removePrivateTags_ = false;
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
150 level_ = ResourceType_Instance;
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
151 allowManualIdentifiers_ = true;
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
154 DicomModification::~DicomModification()
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
155 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
156 ClearReplacements();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
157 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
158
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
159 void DicomModification::Keep(const DicomTag& tag)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
161 removals_.erase(tag);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
162 RemoveInternal(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
163
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1698
diff changeset
164 if (tag.IsPrivate())
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
165 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
166 privateTagsToKeep_.insert(tag);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
167 }
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
168
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
169 MarkNotOrthancAnonymization();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
170 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172 void DicomModification::Remove(const DicomTag& tag)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
173 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
174 removals_.insert(tag);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
175 RemoveInternal(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
176 privateTagsToKeep_.erase(tag);
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
177
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
178 MarkNotOrthancAnonymization();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
179 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
180
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
181 bool DicomModification::IsRemoved(const DicomTag& tag) const
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
182 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
183 return removals_.find(tag) != removals_.end();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
185
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
186 void DicomModification::Replace(const DicomTag& tag,
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
187 const Json::Value& value,
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
188 bool safeForAnonymization)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
190 removals_.erase(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
191 privateTagsToKeep_.erase(tag);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
192 ReplaceInternal(tag, value);
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
193
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
194 if (!safeForAnonymization)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
195 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
196 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
197 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
198 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
199
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
200
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
201 bool DicomModification::IsReplaced(const DicomTag& tag) const
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
203 return replacements_.find(tag) != replacements_.end();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
204 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
205
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
206 const Json::Value& DicomModification::GetReplacement(const DicomTag& tag) const
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
207 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
208 Replacements::const_iterator it = replacements_.find(tag);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
209
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
210 if (it == replacements_.end())
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
211 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
212 throw OrthancException(ErrorCode_InexistentItem);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
213 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
214 else
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
215 {
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
216 return *it->second;
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
220
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
221 std::string DicomModification::GetReplacementAsString(const DicomTag& tag) const
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
222 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
223 const Json::Value& json = GetReplacement(tag);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
224
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
225 if (json.type() != Json::stringValue)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
226 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
227 throw OrthancException(ErrorCode_BadParameterType);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
228 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
229 else
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
230 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
231 return json.asString();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
232 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
233 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
234
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
235
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 void DicomModification::SetRemovePrivateTags(bool removed)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
238 removePrivateTags_ = removed;
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
239
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
240 if (!removed)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
241 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
242 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
243 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
244 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
245
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
246 void DicomModification::SetLevel(ResourceType level)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248 uidMap_.clear();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249 level_ = level;
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
250
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
251 if (level != ResourceType_Patient)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
252 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
253 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
254 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 void DicomModification::SetupAnonymization()
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 removals_.clear();
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
260 ClearReplacements();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 removePrivateTags_ = true;
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
262 level_ = ResourceType_Patient;
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 uidMap_.clear();
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
264 privateTagsToKeep_.clear();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 removals_.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 //removals_.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set in Apply()
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 removals_.insert(DicomTag(0x0008, 0x0050)); // Accession Number
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 removals_.insert(DicomTag(0x0008, 0x0080)); // Institution Name
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 removals_.insert(DicomTag(0x0008, 0x0081)); // Institution Address
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272 removals_.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 removals_.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 removals_.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 removals_.insert(DicomTag(0x0008, 0x1010)); // Station Name
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 removals_.insert(DicomTag(0x0008, 0x1030)); // Study Description
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 removals_.insert(DicomTag(0x0008, 0x103e)); // Series Description
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 removals_.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 removals_.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 removals_.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 removals_.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282 removals_.insert(DicomTag(0x0008, 0x1070)); // Operators' Name
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 removals_.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 removals_.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 removals_.insert(DicomTag(0x0008, 0x2111)); // Derivation Description
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 //removals_.insert(DicomTag(0x0010, 0x0010)); // Patient's Name => cf. below (*)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 //removals_.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 removals_.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289 removals_.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290 removals_.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 removals_.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292 removals_.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293 removals_.insert(DicomTag(0x0010, 0x1010)); // Patient's Age
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294 removals_.insert(DicomTag(0x0010, 0x1020)); // Patient's Size
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295 removals_.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 removals_.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 removals_.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
298 removals_.insert(DicomTag(0x0010, 0x2180)); // Occupation
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299 removals_.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300 removals_.insert(DicomTag(0x0010, 0x4000)); // Patient Comments
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 removals_.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 removals_.insert(DicomTag(0x0018, 0x1030)); // Protocol Name
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 //removals_.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => set in Apply()
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304 //removals_.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => set in Apply()
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
305 removals_.insert(DicomTag(0x0020, 0x0010)); // Study ID
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306 removals_.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
307 removals_.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308 removals_.insert(DicomTag(0x0020, 0x4000)); // Image Comments
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309 removals_.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 removals_.insert(DicomTag(0x0040, 0xa124)); // UID
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 removals_.insert(DicomTag(0x0040, 0xa730)); // Content Sequence
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 removals_.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313 removals_.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 removals_.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 // Some more removals (from the experience of DICOM files at the CHU of Liege)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 removals_.insert(DicomTag(0x0010, 0x1040)); // Patient's Address
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 removals_.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319 removals_.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 removals_.insert(DicomTag(0x0010, 0x2000)); // Medical Alerts
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 // Set the DeidentificationMethod tag
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
323 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 // Set the PatientIdentityRemoved tag
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
326 ReplaceInternal(DicomTag(0x0012, 0x0062), "YES");
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 // (*) Choose a random patient name and ID
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
329 std::string patientId = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
330 ReplaceInternal(DICOM_TAG_PATIENT_ID, patientId);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
331 ReplaceInternal(DICOM_TAG_PATIENT_NAME, patientId);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 void DicomModification::Apply(ParsedDicomFile& toModify)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 // Check the request
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
337 assert(ResourceType_Patient + 1 == ResourceType_Study &&
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
338 ResourceType_Study + 1 == ResourceType_Series &&
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
339 ResourceType_Series + 1 == ResourceType_Instance);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341 if (IsRemoved(DICOM_TAG_PATIENT_ID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342 IsRemoved(DICOM_TAG_STUDY_INSTANCE_UID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343 IsRemoved(DICOM_TAG_SERIES_INSTANCE_UID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 IsRemoved(DICOM_TAG_SOP_INSTANCE_UID))
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346 throw OrthancException(ErrorCode_BadRequest);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347 }
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
348
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
350 // Sanity checks at the patient level
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
351 if (level_ == ResourceType_Patient && !IsReplaced(DICOM_TAG_PATIENT_ID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352 {
916
b4b46e3e6017 more explicit error message
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
353 LOG(ERROR) << "When modifying a patient, her PatientID is required to be modified";
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354 throw OrthancException(ErrorCode_BadRequest);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
357 if (!allowManualIdentifiers_)
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
358 {
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
359 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
360 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
361 LOG(ERROR) << "When modifying a patient, the StudyInstanceUID cannot be manually modified";
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
362 throw OrthancException(ErrorCode_BadRequest);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
363 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
364
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
365 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
366 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
367 LOG(ERROR) << "When modifying a patient, the SeriesInstanceUID cannot be manually modified";
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
368 throw OrthancException(ErrorCode_BadRequest);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
369 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
370
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
371 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
372 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
373 LOG(ERROR) << "When modifying a patient, the SopInstanceUID cannot be manually modified";
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
374 throw OrthancException(ErrorCode_BadRequest);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
375 }
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
376 }
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
377
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
378
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
379 // Sanity checks at the study level
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
380 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_PATIENT_ID))
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
381 {
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
382 LOG(ERROR) << "When modifying a study, the parent PatientID cannot be manually modified";
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
383 throw OrthancException(ErrorCode_BadRequest);
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
384 }
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
385
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
386 if (!allowManualIdentifiers_)
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
387 {
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
388 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
389 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
390 LOG(ERROR) << "When modifying a study, the SeriesInstanceUID cannot be manually modified";
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
391 throw OrthancException(ErrorCode_BadRequest);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
392 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
393
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
394 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
395 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
396 LOG(ERROR) << "When modifying a study, the SopInstanceUID cannot be manually modified";
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
397 throw OrthancException(ErrorCode_BadRequest);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
398 }
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
399 }
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
400
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
402 // Sanity checks at the series level
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
403 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_PATIENT_ID))
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
404 {
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
405 LOG(ERROR) << "When modifying a series, the parent PatientID cannot be manually modified";
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
406 throw OrthancException(ErrorCode_BadRequest);
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
407 }
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
408
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
409 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410 {
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
411 LOG(ERROR) << "When modifying a series, the parent StudyInstanceUID cannot be manually modified";
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
412 throw OrthancException(ErrorCode_BadRequest);
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
413 }
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
414
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
415 if (!allowManualIdentifiers_)
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
416 {
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
417 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
418 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
419 LOG(ERROR) << "When modifying a series, the SopInstanceUID cannot be manually modified";
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
420 throw OrthancException(ErrorCode_BadRequest);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
421 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
424
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
425 // Sanity checks at the instance level
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
426 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_PATIENT_ID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427 {
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
428 LOG(ERROR) << "When modifying an instance, the parent PatientID cannot be manually modified";
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 throw OrthancException(ErrorCode_BadRequest);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
432 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
433 {
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
434 LOG(ERROR) << "When modifying an instance, the parent StudyInstanceUID cannot be manually modified";
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
435 throw OrthancException(ErrorCode_BadRequest);
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
436 }
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
437
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
438 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
439 {
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
440 LOG(ERROR) << "When modifying an instance, the parent SeriesInstanceUID cannot be manually modified";
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
441 throw OrthancException(ErrorCode_BadRequest);
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
442 }
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
443
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
444
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445 // (1) Remove the private tags, if need be
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 if (removePrivateTags_)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447 {
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
448 toModify.RemovePrivateTags(privateTagsToKeep_);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451 // (2) Remove the tags specified by the user
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
452 for (SetOfTags::const_iterator it = removals_.begin();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 it != removals_.end(); ++it)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 toModify.Remove(*it);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458 // (3) Replace the tags
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 for (Replacements::const_iterator it = replacements_.begin();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 it != replacements_.end(); ++it)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
462 toModify.Replace(it->first, *it->second, true /* decode data URI scheme */, DicomReplaceMode_InsertIfAbsent);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 // (4) Update the DICOM identifiers
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
466 if (level_ <= ResourceType_Study &&
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
467 !IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
469 MapDicomIdentifier(toModify, ResourceType_Study);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
472 if (level_ <= ResourceType_Series &&
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
473 !IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
475 MapDicomIdentifier(toModify, ResourceType_Series);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
478 if (level_ <= ResourceType_Instance && // Always true
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
479 !IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
481 MapDicomIdentifier(toModify, ResourceType_Instance);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 }