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annotate OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.cpp @ 5666:aa231c18b9d2 find-refactoring

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adding computed tags
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 04 Jul 2024 18:31:54 +0200
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children
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU Lesser General Public License
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11 * as published by the Free Software Foundation, either version 3 of
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12 * the License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * Lesser General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU Lesser General Public
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20 * License along with this program. If not, see
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21 * <http://www.gnu.org/licenses/>.
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22 **/
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23
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24
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25 #include "../PrecompiledHeaders.h"
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26 #include "DcmtkTranscoder.h"
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27
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28
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29 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG)
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30 # error Macro ORTHANC_ENABLE_DCMTK_JPEG must be defined
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31 #endif
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32
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33 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS)
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34 # error Macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined
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35 #endif
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36
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37
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38 #include "FromDcmtkBridge.h"
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39 #include "../Logging.h"
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40 #include "../OrthancException.h"
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41 #include "../Toolbox.h"
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42
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43 #include <dcmtk/dcmdata/dcdeftag.h>
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44 #include <dcmtk/dcmjpeg/djrploss.h> // for DJ_RPLossy
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45 #include <dcmtk/dcmjpeg/djrplol.h> // for DJ_RPLossless
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46 #include <dcmtk/dcmjpls/djrparam.h> // for DJLSRepresentationParameter
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47
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48 #include <boost/lexical_cast.hpp>
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49
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50
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51 namespace Orthanc
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52 {
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53 DcmtkTranscoder::DcmtkTranscoder() :
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54 lossyQuality_(90)
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55 {
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56 }
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57
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58
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59 static bool GetBitsStored(uint16_t& bitsStored,
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60 DcmDataset& dataset)
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61 {
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62 return dataset.findAndGetUint16(DCM_BitsStored, bitsStored).good();
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63 }
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64
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65
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66 void DcmtkTranscoder::SetLossyQuality(unsigned int quality)
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67 {
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68 if (quality == 0 ||
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69 quality > 100)
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70 {
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71 throw OrthancException(
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72 ErrorCode_ParameterOutOfRange,
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73 "The quality for lossy transcoding must be an integer between 1 and 100, received: " +
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74 boost::lexical_cast<std::string>(quality));
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75 }
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76 else
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77 {
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78 LOG(INFO) << "Quality for lossy transcoding using DCMTK is set to: " << quality;
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79 lossyQuality_ = quality;
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80 }
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81 }
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82
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83 unsigned int DcmtkTranscoder::GetLossyQuality() const
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84 {
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85 return lossyQuality_;
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86 }
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87
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88 bool TryTranscode(std::vector<std::string>& failureReasons, /* out */
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89 DicomTransferSyntax& selectedSyntax, /* out*/
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90 DcmFileFormat& dicom, /* in/out */
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91 const std::set<DicomTransferSyntax>& allowedSyntaxes,
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92 DicomTransferSyntax trySyntax)
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93 {
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94 if (allowedSyntaxes.find(trySyntax) != allowedSyntaxes.end())
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95 {
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96 if (FromDcmtkBridge::Transcode(dicom, trySyntax, NULL))
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97 {
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98 selectedSyntax = trySyntax;
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99 return true;
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100 }
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101
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102 failureReasons.push_back(std::string("Internal error while transcoding to ") + GetTransferSyntaxUid(trySyntax));
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103 }
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104 return false;
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105 }
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106
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107 bool DcmtkTranscoder::InplaceTranscode(DicomTransferSyntax& selectedSyntax /* out */,
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108 std::string& failureReason /* out */,
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109 DcmFileFormat& dicom, /* in/out */
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110 const std::set<DicomTransferSyntax>& allowedSyntaxes,
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111 bool allowNewSopInstanceUid)
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112 {
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113 std::vector<std::string> failureReasons;
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114
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115 if (dicom.getDataset() == NULL)
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116 {
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117 throw OrthancException(ErrorCode_InternalError);
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118 }
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119
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120 DicomTransferSyntax syntax;
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121 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(syntax, dicom))
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122 {
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123 throw OrthancException(ErrorCode_BadFileFormat,
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124 "Cannot determine the transfer syntax");
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125 }
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126
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127 uint16_t bitsStored;
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128 bool hasBitsStored = GetBitsStored(bitsStored, *dicom.getDataset());
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129
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130 if (allowedSyntaxes.find(syntax) != allowedSyntaxes.end())
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131 {
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132 // No transcoding is needed
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133 return true;
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134 }
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135
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136 if (TryTranscode(failureReasons, selectedSyntax, dicom, allowedSyntaxes, DicomTransferSyntax_LittleEndianImplicit))
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137 {
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138 return true;
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139 }
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140
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141 if (TryTranscode(failureReasons, selectedSyntax, dicom, allowedSyntaxes, DicomTransferSyntax_LittleEndianExplicit))
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142 {
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143 return true;
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144 }
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145
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146 if (TryTranscode(failureReasons, selectedSyntax, dicom, allowedSyntaxes, DicomTransferSyntax_BigEndianExplicit))
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147 {
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148 return true;
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149 }
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parents: 5185
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150
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151 if (TryTranscode(failureReasons, selectedSyntax, dicom, allowedSyntaxes, DicomTransferSyntax_DeflatedLittleEndianExplicit))
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152 {
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153 return true;
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154 }
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155
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156
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157 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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158 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess1) != allowedSyntaxes.end())
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159 {
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160 if (!allowNewSopInstanceUid)
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161 {
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162 failureReasons.push_back(std::string("Can not transcode to ") + GetTransferSyntaxUid(DicomTransferSyntax_JPEGProcess1) + " without generating new SOPInstanceUID");
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163 }
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164 else if (hasBitsStored && bitsStored != 8)
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165 {
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166 failureReasons.push_back(std::string("Can not transcode to ") + GetTransferSyntaxUid(DicomTransferSyntax_JPEGProcess1) + " if BitsStored != 8");
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167 }
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168 else
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169 {
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170 // Check out "dcmjpeg/apps/dcmcjpeg.cc"
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171 DJ_RPLossy parameters(lossyQuality_);
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172
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173 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess1, &parameters))
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174 {
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175 selectedSyntax = DicomTransferSyntax_JPEGProcess1;
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176 return true;
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177 }
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178 failureReasons.push_back(std::string("Internal error while transcoding to ") + GetTransferSyntaxUid(DicomTransferSyntax_JPEGProcess1));
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179 }
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180 }
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181 #endif
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182
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183 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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184 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess2_4) != allowedSyntaxes.end())
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185 {
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186 if (!allowNewSopInstanceUid)
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Alain Mazy <am@osimis.io>
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187 {
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188 failureReasons.push_back(std::string("Can not transcode to ") + GetTransferSyntaxUid(DicomTransferSyntax_JPEGProcess2_4) + " without generating new SOPInstanceUID");
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189 }
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190 else if (hasBitsStored && bitsStored > 12)
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191 {
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192 failureReasons.push_back(std::string("Can not transcode to ") + GetTransferSyntaxUid(DicomTransferSyntax_JPEGProcess2_4) + " if BitsStored != 8");
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193 }
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194 else
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195 {
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196 // Check out "dcmjpeg/apps/dcmcjpeg.cc"
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197 DJ_RPLossy parameters(lossyQuality_);
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198 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess2_4, &parameters))
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199 {
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200 selectedSyntax = DicomTransferSyntax_JPEGProcess2_4;
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201 return true;
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202 }
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203 failureReasons.push_back(std::string("Internal error while transcoding to ") + GetTransferSyntaxUid(DicomTransferSyntax_JPEGProcess2_4));
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204 }
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205 }
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parents:
diff changeset
206 #endif
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parents:
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207
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208 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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209 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess14) != allowedSyntaxes.end())
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210 {
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parents: 3894
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211 // Check out "dcmjpeg/apps/dcmcjpeg.cc"
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parents: 3894
diff changeset
212 DJ_RPLossless parameters(6 /* opt_selection_value */,
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213 0 /* opt_point_transform */);
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parents: 3894
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214 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess14, &parameters))
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3894
diff changeset
215 {
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diff changeset
216 selectedSyntax = DicomTransferSyntax_JPEGProcess14;
3902
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217 return true;
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218 }
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219 failureReasons.push_back(std::string("Internal error while transcoding to ") + GetTransferSyntaxUid(DicomTransferSyntax_JPEGProcess14));
3902
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Sebastien Jodogne <s.jodogne@gmail.com>
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220 }
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parents: 3894
diff changeset
221 #endif
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parents: 3894
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222
7459fcb1bdf7 transcoding to 1.2.840.10008.1.2.4.57
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parents: 3894
diff changeset
223 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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224 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess14SV1) != allowedSyntaxes.end())
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225 {
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parents:
diff changeset
226 // Check out "dcmjpeg/apps/dcmcjpeg.cc"
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parents:
diff changeset
227 DJ_RPLossless parameters(6 /* opt_selection_value */,
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parents:
diff changeset
228 0 /* opt_point_transform */);
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parents:
diff changeset
229 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess14SV1, &parameters))
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parents:
diff changeset
230 {
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diff changeset
231 selectedSyntax = DicomTransferSyntax_JPEGProcess14SV1;
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232 return true;
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parents:
diff changeset
233 }
5480
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234 failureReasons.push_back(std::string("Internal error while transcoding to ") + GetTransferSyntaxUid(DicomTransferSyntax_JPEGProcess14SV1));
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235 }
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parents:
diff changeset
236 #endif
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parents:
diff changeset
237
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diff changeset
238 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
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diff changeset
239 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGLSLossless) != allowedSyntaxes.end())
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parents:
diff changeset
240 {
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diff changeset
241 // Check out "dcmjpls/apps/dcmcjpls.cc"
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parents:
diff changeset
242 DJLSRepresentationParameter parameters(2 /* opt_nearlossless_deviation */,
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parents:
diff changeset
243 OFTrue /* opt_useLosslessProcess */);
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parents:
diff changeset
244
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diff changeset
245 /**
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diff changeset
246 * WARNING: This call results in a segmentation fault if using
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parents:
diff changeset
247 * the DCMTK package 3.6.2 from Ubuntu 18.04.
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diff changeset
248 **/
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diff changeset
249 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGLSLossless, &parameters))
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diff changeset
250 {
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diff changeset
251 selectedSyntax = DicomTransferSyntax_JPEGLSLossless;
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252 return true;
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diff changeset
253 }
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diff changeset
254 failureReasons.push_back(std::string("Internal error while transcoding to ") + GetTransferSyntaxUid(DicomTransferSyntax_JPEGLSLossless));
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255 }
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diff changeset
256 #endif
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parents:
diff changeset
257
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diff changeset
258 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
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diff changeset
259 if (allowNewSopInstanceUid &&
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diff changeset
260 allowedSyntaxes.find(DicomTransferSyntax_JPEGLSLossy) != allowedSyntaxes.end())
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diff changeset
261 {
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diff changeset
262 // Check out "dcmjpls/apps/dcmcjpls.cc"
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diff changeset
263 DJLSRepresentationParameter parameters(2 /* opt_nearlossless_deviation */,
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parents:
diff changeset
264 OFFalse /* opt_useLosslessProcess */);
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parents:
diff changeset
265
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266 /**
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diff changeset
267 * WARNING: This call results in a segmentation fault if using
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parents:
diff changeset
268 * the DCMTK package 3.6.2 from Ubuntu 18.04.
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parents:
diff changeset
269 **/
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parents:
diff changeset
270 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGLSLossy, &parameters))
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diff changeset
271 {
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diff changeset
272 selectedSyntax = DicomTransferSyntax_JPEGLSLossy;
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273 return true;
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274 }
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275 failureReasons.push_back(std::string("Internal error while transcoding to ") + GetTransferSyntaxUid(DicomTransferSyntax_JPEGLSLossy));
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276 }
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277 #endif
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278
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279 Orthanc::Toolbox::JoinStrings(failureReason, failureReasons, ", ");
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280 return false;
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281 }
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282
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283 bool DcmtkTranscoder::IsSupported(DicomTransferSyntax syntax)
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284 {
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285 if (syntax == DicomTransferSyntax_LittleEndianImplicit ||
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286 syntax == DicomTransferSyntax_LittleEndianExplicit ||
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287 syntax == DicomTransferSyntax_BigEndianExplicit ||
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288 syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit)
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289 {
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290 return true;
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291 }
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292
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293 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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294 if (syntax == DicomTransferSyntax_JPEGProcess1 ||
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295 syntax == DicomTransferSyntax_JPEGProcess2_4 ||
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296 syntax == DicomTransferSyntax_JPEGProcess14 ||
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297 syntax == DicomTransferSyntax_JPEGProcess14SV1)
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298 {
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299 return true;
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300 }
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301 #endif
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302
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303 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
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304 if (syntax == DicomTransferSyntax_JPEGLSLossless ||
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305 syntax == DicomTransferSyntax_JPEGLSLossy)
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306 {
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307 return true;
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308 }
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309 #endif
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310
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311 return false;
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312 }
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313
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314
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315 bool DcmtkTranscoder::Transcode(DicomImage& target,
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316 DicomImage& source /* in, "GetParsed()" possibly modified */,
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317 const std::set<DicomTransferSyntax>& allowedSyntaxes,
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318 bool allowNewSopInstanceUid)
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319 {
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320 target.Clear();
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321
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322 DicomTransferSyntax sourceSyntax;
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323 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(sourceSyntax, source.GetParsed()))
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324 {
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325 LOG(ERROR) << "Unsupport transfer syntax for transcoding";
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326 return false;
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327 }
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328
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329 std::string failureReason;
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330 std::string s;
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331 for (std::set<DicomTransferSyntax>::const_iterator
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332 it = allowedSyntaxes.begin(); it != allowedSyntaxes.end(); ++it)
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333 {
5480
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334 if (!s.empty())
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335 {
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336 s += ", ";
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337 }
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338
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diff changeset
339 s += GetTransferSyntaxUid(*it);
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340 }
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341
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342 if (s.empty())
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343 {
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344 s = "<none>";
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345 }
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346
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347 LOG(INFO) << "DCMTK transcoding from " << GetTransferSyntaxUid(sourceSyntax)
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348 << " to one of: " << s;
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349
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350 #if !defined(NDEBUG)
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351 const std::string sourceSopInstanceUid = GetSopInstanceUid(source.GetParsed());
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352 #endif
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353
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354 DicomTransferSyntax targetSyntax;
3944
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355 if (allowedSyntaxes.find(sourceSyntax) != allowedSyntaxes.end())
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356 {
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357 // No transcoding is needed
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358 target.AcquireParsed(source);
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359 target.AcquireBuffer(source);
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360 return true;
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361 }
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diff changeset
362 else if (InplaceTranscode(targetSyntax, failureReason, source.GetParsed(),
3944
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diff changeset
363 allowedSyntaxes, allowNewSopInstanceUid))
3946
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diff changeset
364 {
3944
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365 // Sanity check
3946
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diff changeset
366 DicomTransferSyntax targetSyntax2;
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diff changeset
367 if (FromDcmtkBridge::LookupOrthancTransferSyntax(targetSyntax2, source.GetParsed()) &&
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diff changeset
368 targetSyntax == targetSyntax2 &&
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diff changeset
369 allowedSyntaxes.find(targetSyntax2) != allowedSyntaxes.end())
3944
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diff changeset
370 {
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diff changeset
371 target.AcquireParsed(source);
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diff changeset
372 source.Clear();
3946
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373
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diff changeset
374 #if !defined(NDEBUG)
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diff changeset
375 // Only run the sanity check in debug mode
3951
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diff changeset
376 CheckTranscoding(target, sourceSyntax, sourceSopInstanceUid,
3946
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diff changeset
377 allowedSyntaxes, allowNewSopInstanceUid);
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diff changeset
378 #endif
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diff changeset
379
3944
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380 return true;
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diff changeset
381 }
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diff changeset
382 else
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diff changeset
383 {
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diff changeset
384 throw OrthancException(ErrorCode_InternalError);
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diff changeset
385 }
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diff changeset
386 }
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diff changeset
387 else
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diff changeset
388 {
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diff changeset
389 // Cannot transcode
5480
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diff changeset
390 LOG(WARNING) << "DCMTK was unable to transcode from " << GetTransferSyntaxUid(sourceSyntax)
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diff changeset
391 << " to one of: " << s << " " << failureReason;
3944
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diff changeset
392 return false;
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diff changeset
393 }
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diff changeset
394 }
3893
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395 }