Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 1004:a226e0959d8b lua-scripting
DicomInstanceToStore
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Tue, 08 Jul 2014 14:06:05 +0200 |
parents | b067017a8a5b |
children | 649d47854314 |
rev | line source |
---|---|
0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
689 | 3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, |
0 | 4 * Belgium |
5 * | |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
831
84513f2ee1f3
pch for unit tests and server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
824
diff
changeset
|
33 #include "PrecompiledHeadersServer.h" |
0 | 34 #include "ServerIndex.h" |
35 | |
6 | 36 #ifndef NOMINMAX |
2 | 37 #define NOMINMAX |
6 | 38 #endif |
39 | |
8 | 40 #include "EmbeddedResources.h" |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
41 #include "OrthancInitialization.h" |
0 | 42 #include "../Core/Toolbox.h" |
43 #include "../Core/Uuid.h" | |
44 #include "../Core/DicomFormat/DicomArray.h" | |
45 #include "../Core/SQLite/Transaction.h" | |
46 #include "FromDcmtkBridge.h" | |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
47 #include "ServerContext.h" |
0 | 48 |
49 #include <boost/lexical_cast.hpp> | |
50 #include <stdio.h> | |
108 | 51 #include <glog/logging.h> |
0 | 52 |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
53 static const uint64_t MEGA_BYTES = 1024 * 1024; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
54 |
62 | 55 namespace Orthanc |
0 | 56 { |
57 namespace Internals | |
58 { | |
202 | 59 class ServerIndexListener : public IServerIndexListener |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
60 { |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
61 private: |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
62 ServerContext& context_; |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
63 bool hasRemainingLevel_; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
64 ResourceType remainingType_; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
65 std::string remainingPublicId_; |
264
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
66 std::list<std::string> pendingFilesToRemove_; |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
67 uint64_t sizeOfFilesToRemove_; |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
68 |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
69 public: |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
70 ServerIndexListener(ServerContext& context) : |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
71 context_(context) |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
72 { |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
73 Reset(); |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
74 assert(ResourceType_Patient < ResourceType_Study && |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
75 ResourceType_Study < ResourceType_Series && |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
76 ResourceType_Series < ResourceType_Instance); |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
77 } |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
78 |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
79 void Reset() |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
80 { |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
81 sizeOfFilesToRemove_ = 0; |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
82 hasRemainingLevel_ = false; |
264
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
83 pendingFilesToRemove_.clear(); |
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
84 } |
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
85 |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
86 uint64_t GetSizeOfFilesToRemove() |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
87 { |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
88 return sizeOfFilesToRemove_; |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
89 } |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
90 |
264
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
91 void CommitFilesToRemove() |
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
92 { |
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
93 for (std::list<std::string>::iterator |
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
94 it = pendingFilesToRemove_.begin(); |
656 | 95 it != pendingFilesToRemove_.end(); ++it) |
264
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
96 { |
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
97 context_.RemoveFile(*it); |
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
98 } |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
99 } |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
100 |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
101 virtual void SignalRemainingAncestor(ResourceType parentType, |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
102 const std::string& publicId) |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
103 { |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
104 LOG(INFO) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
105 |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
106 if (hasRemainingLevel_) |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
107 { |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
108 if (parentType < remainingType_) |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
109 { |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
110 remainingType_ = parentType; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
111 remainingPublicId_ = publicId; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
112 } |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
113 } |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
114 else |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
115 { |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
116 hasRemainingLevel_ = true; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
117 remainingType_ = parentType; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
118 remainingPublicId_ = publicId; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
119 } |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
120 } |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
121 |
273
d384af918264
more detailed signal about deleted file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
272
diff
changeset
|
122 virtual void SignalFileDeleted(const FileInfo& info) |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
123 { |
273
d384af918264
more detailed signal about deleted file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
272
diff
changeset
|
124 assert(Toolbox::IsUuid(info.GetUuid())); |
d384af918264
more detailed signal about deleted file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
272
diff
changeset
|
125 pendingFilesToRemove_.push_back(info.GetUuid()); |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
126 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
127 } |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
128 |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
129 bool HasRemainingLevel() const |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
130 { |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
131 return hasRemainingLevel_; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
132 } |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
133 |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
134 ResourceType GetRemainingType() const |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
135 { |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
136 assert(HasRemainingLevel()); |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
137 return remainingType_; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
138 } |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
139 |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
140 const std::string& GetRemainingPublicId() const |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
141 { |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
142 assert(HasRemainingLevel()); |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
143 return remainingPublicId_; |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
144 } |
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
145 }; |
0 | 146 } |
147 | |
148 | |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
149 class ServerIndex::Transaction |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
150 { |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
151 private: |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
152 ServerIndex& index_; |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
153 std::auto_ptr<SQLite::Transaction> transaction_; |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
154 bool isCommitted_; |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
155 |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
156 public: |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
157 Transaction(ServerIndex& index) : |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
158 index_(index), |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
159 isCommitted_(false) |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
160 { |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
161 assert(index_.currentStorageSize_ == index_.db_->GetTotalCompressedSize()); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
162 |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
163 index_.listener_->Reset(); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
164 transaction_.reset(index_.db_->StartTransaction()); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
165 transaction_->Begin(); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
166 } |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
167 |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
168 void Commit(uint64_t sizeOfAddedFiles) |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
169 { |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
170 if (!isCommitted_) |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
171 { |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
172 transaction_->Commit(); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
173 |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
174 // We can remove the files once the SQLite transaction has |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
175 // been successfully committed. Some files might have to be |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
176 // deleted because of recycling. |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
177 index_.listener_->CommitFilesToRemove(); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
178 |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
179 index_.currentStorageSize_ += sizeOfAddedFiles; |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
180 |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
181 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
182 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
183 |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
184 assert(index_.currentStorageSize_ == index_.db_->GetTotalCompressedSize()); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
185 |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
186 isCommitted_ = true; |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
187 } |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
188 } |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
189 }; |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
190 |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
191 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
192 struct ServerIndex::UnstableResourcePayload |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
193 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
194 Orthanc::ResourceType type_; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
195 boost::posix_time::ptime time_; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
196 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
197 UnstableResourcePayload() : type_(Orthanc::ResourceType_Instance) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
198 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
199 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
200 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
201 UnstableResourcePayload(Orthanc::ResourceType type) : type_(type) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
202 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
203 time_ = boost::posix_time::second_clock::local_time(); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
204 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
205 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
206 unsigned int GetAge() const |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
207 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
208 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
209 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
210 }; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
211 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
212 |
212 | 213 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 214 const std::string& uuid, |
202 | 215 ResourceType expectedType) |
0 | 216 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
217 boost::mutex::scoped_lock lock(mutex_); |
202 | 218 listener_->Reset(); |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
219 |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
220 Transaction t(*this); |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
221 |
202 | 222 int64_t id; |
223 ResourceType type; | |
224 if (!db_->LookupResource(uuid, id, type) || | |
225 expectedType != type) | |
0 | 226 { |
227 return false; | |
228 } | |
202 | 229 |
230 db_->DeleteResource(id); | |
0 | 231 |
202 | 232 if (listener_->HasRemainingLevel()) |
0 | 233 { |
202 | 234 ResourceType type = listener_->GetRemainingType(); |
235 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 236 |
237 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 238 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
239 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 240 target["RemainingAncestor"]["ID"] = uuid; |
241 } | |
242 else | |
243 { | |
244 target["RemainingAncestor"] = Json::nullValue; | |
245 } | |
246 | |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
247 t.Commit(0); |
264
5b8e8b74bc8b
remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
240
diff
changeset
|
248 |
0 | 249 return true; |
250 } | |
251 | |
252 | |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
253 void ServerIndex::FlushThread(ServerIndex* that) |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
254 { |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
255 unsigned int sleep; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
256 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
257 try |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
258 { |
744 | 259 boost::mutex::scoped_lock lock(that->mutex_); |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
260 std::string sleepString = that->db_->GetGlobalProperty(GlobalProperty_FlushSleep); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
261 sleep = boost::lexical_cast<unsigned int>(sleepString); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
262 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
263 catch (boost::bad_lexical_cast&) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
264 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
265 // By default, wait for 10 seconds before flushing |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
266 sleep = 10; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
267 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
268 |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
269 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
270 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
271 unsigned int count = 0; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
272 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
273 while (!that->done_) |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
274 { |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
275 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
276 count++; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
277 if (count < sleep) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
278 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
279 continue; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
280 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
281 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
282 boost::mutex::scoped_lock lock(that->mutex_); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
283 that->db_->FlushToDisk(); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
284 count = 0; |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
285 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
286 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
287 LOG(INFO) << "Stopping the database flushing thread"; |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
288 } |
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
289 |
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
290 |
433 | 291 static void ComputeExpectedNumberOfInstances(DatabaseWrapper& db, |
292 int64_t series, | |
293 const DicomMap& dicomSummary) | |
294 { | |
295 try | |
296 { | |
656 | 297 const DicomValue* value; |
298 const DicomValue* value2; | |
299 | |
433 | 300 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
301 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
302 { | |
303 // Patch for series with temporal positions thanks to Will Ryder | |
304 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->AsString()); | |
305 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->AsString()); | |
306 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); | |
307 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
308 } | |
309 | |
310 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
311 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
312 { | |
313 // Support of Cardio-PET images | |
314 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->AsString()); | |
315 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->AsString()); | |
316 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); | |
317 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
318 } | |
319 | |
320 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
321 { | |
322 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->AsString()); | |
323 } | |
324 } | |
325 catch (boost::bad_lexical_cast) | |
326 { | |
327 } | |
328 } | |
329 | |
330 | |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
331 ServerIndex::ServerIndex(ServerContext& context, |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
332 const std::string& dbPath) : |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
333 done_(false), |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
334 maximumStorageSize_(0), |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
335 maximumPatients_(0) |
186
f68c039b0571
preparing refactoring of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
180
diff
changeset
|
336 { |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
337 listener_.reset(new Internals::ServerIndexListener(context)); |
186
f68c039b0571
preparing refactoring of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
180
diff
changeset
|
338 |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
339 if (dbPath == ":memory:") |
180
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
340 { |
202 | 341 db_.reset(new DatabaseWrapper(*listener_)); |
180
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
342 } |
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
343 else |
0 | 344 { |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
345 boost::filesystem::path p = dbPath; |
180
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
346 |
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
347 try |
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
348 { |
201
bee20e978835
refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
200
diff
changeset
|
349 boost::filesystem::create_directories(p); |
180
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
350 } |
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
351 catch (boost::filesystem::filesystem_error) |
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
352 { |
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
353 } |
626777d01dc4
use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
179
diff
changeset
|
354 |
202 | 355 db_.reset(new DatabaseWrapper(p.string() + "/index", *listener_)); |
0 | 356 } |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
357 |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
358 currentStorageSize_ = db_->GetTotalCompressedSize(); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
359 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
360 // Initial recycling if the parameters have changed since the last |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
361 // execution of Orthanc |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
362 StandaloneRecycling(); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
363 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
364 flushThread_ = boost::thread(FlushThread, this); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
365 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
366 } |
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
367 |
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
368 |
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
369 ServerIndex::~ServerIndex() |
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
370 { |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
371 done_ = true; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
372 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
373 if (flushThread_.joinable()) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
374 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
375 flushThread_.join(); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
376 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
377 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
378 if (unstableResourcesMonitorThread_.joinable()) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
379 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
380 unstableResourcesMonitorThread_.join(); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
381 } |
0 | 382 } |
383 | |
384 | |
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
385 StoreStatus ServerIndex::Store(const DicomMap& dicomSummary, |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
386 const Attachments& attachments, |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
387 const std::string& remoteAet, |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
388 MetadataMap* metadata) |
0 | 389 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
390 boost::mutex::scoped_lock lock(mutex_); |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
391 listener_->Reset(); |
0 | 392 |
178 | 393 DicomInstanceHasher hasher(dicomSummary); |
0 | 394 |
395 try | |
396 { | |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
397 Transaction t(*this); |
0 | 398 |
202 | 399 // Do nothing if the instance already exists |
0 | 400 { |
432 | 401 ResourceType type; |
402 int64_t tmp; | |
403 if (db_->LookupResource(hasher.HashInstance(), tmp, type)) | |
404 { | |
405 assert(type == ResourceType_Instance); | |
406 return StoreStatus_AlreadyStored; | |
407 } | |
0 | 408 } |
409 | |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
410 // Ensure there is enough room in the storage for the new instance |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
411 uint64_t instanceSize = 0; |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
412 for (Attachments::const_iterator it = attachments.begin(); |
656 | 413 it != attachments.end(); ++it) |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
414 { |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
415 instanceSize += it->GetCompressedSize(); |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
416 } |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
417 |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
418 Recycle(instanceSize, hasher.HashPatient()); |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
419 |
202 | 420 // Create the instance |
432 | 421 int64_t instance = db_->CreateResource(hasher.HashInstance(), ResourceType_Instance); |
202 | 422 |
423 DicomMap dicom; | |
424 dicomSummary.ExtractInstanceInformation(dicom); | |
425 db_->SetMainDicomTags(instance, dicom); | |
426 | |
432 | 427 // Detect up to which level the patient/study/series/instance |
428 // hierarchy must be created | |
429 int64_t patient = -1, study = -1, series = -1; | |
430 bool isNewPatient = false; | |
431 bool isNewStudy = false; | |
432 bool isNewSeries = false; | |
433 | |
0 | 434 { |
432 | 435 ResourceType dummy; |
436 | |
437 if (db_->LookupResource(hasher.HashSeries(), series, dummy)) | |
438 { | |
439 assert(dummy == ResourceType_Series); | |
440 // The patient, the study and the series already exist | |
441 | |
442 bool ok = (db_->LookupResource(hasher.HashPatient(), patient, dummy) && | |
443 db_->LookupResource(hasher.HashStudy(), study, dummy)); | |
444 assert(ok); | |
445 } | |
446 else if (db_->LookupResource(hasher.HashStudy(), study, dummy)) | |
447 { | |
448 assert(dummy == ResourceType_Study); | |
449 | |
450 // New series: The patient and the study already exist | |
451 isNewSeries = true; | |
452 | |
453 bool ok = db_->LookupResource(hasher.HashPatient(), patient, dummy); | |
454 assert(ok); | |
455 } | |
456 else if (db_->LookupResource(hasher.HashPatient(), patient, dummy)) | |
457 { | |
458 assert(dummy == ResourceType_Patient); | |
459 | |
460 // New study and series: The patient already exist | |
461 isNewStudy = true; | |
462 isNewSeries = true; | |
463 } | |
464 else | |
465 { | |
466 // New patient, study and series: Nothing exists | |
467 isNewPatient = true; | |
468 isNewStudy = true; | |
469 isNewSeries = true; | |
470 } | |
471 } | |
472 | |
473 // Create the series if needed | |
474 if (isNewSeries) | |
475 { | |
202 | 476 series = db_->CreateResource(hasher.HashSeries(), ResourceType_Series); |
477 dicomSummary.ExtractSeriesInformation(dicom); | |
478 db_->SetMainDicomTags(series, dicom); | |
432 | 479 } |
202 | 480 |
432 | 481 // Create the study if needed |
482 if (isNewStudy) | |
483 { | |
484 study = db_->CreateResource(hasher.HashStudy(), ResourceType_Study); | |
485 dicomSummary.ExtractStudyInformation(dicom); | |
486 db_->SetMainDicomTags(study, dicom); | |
487 } | |
488 | |
489 // Create the patient if needed | |
490 if (isNewPatient) | |
491 { | |
492 patient = db_->CreateResource(hasher.HashPatient(), ResourceType_Patient); | |
493 dicomSummary.ExtractPatientInformation(dicom); | |
494 db_->SetMainDicomTags(patient, dicom); | |
495 } | |
202 | 496 |
432 | 497 // Create the parent-to-child links |
498 db_->AttachChild(series, instance); | |
499 | |
500 if (isNewSeries) | |
501 { | |
502 db_->AttachChild(study, series); | |
0 | 503 } |
432 | 504 |
505 if (isNewStudy) | |
0 | 506 { |
432 | 507 db_->AttachChild(patient, study); |
0 | 508 } |
509 | |
432 | 510 // Sanity checks |
511 assert(patient != -1); | |
512 assert(study != -1); | |
513 assert(series != -1); | |
514 assert(instance != -1); | |
515 | |
202 | 516 // Attach the files to the newly created instance |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
517 for (Attachments::const_iterator it = attachments.begin(); |
656 | 518 it != attachments.end(); ++it) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
519 { |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
520 db_->AddAttachment(instance, *it); |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
521 } |
202 | 522 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
523 // Attach the user-specified metadata |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
524 if (metadata) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
525 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
526 for (MetadataMap::const_iterator |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
527 it = metadata->begin(); it != metadata->end(); ++it) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
528 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
529 switch (it->first.first) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
530 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
531 case ResourceType_Patient: |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
532 db_->SetMetadata(patient, it->first.second, it->second); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
533 break; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
534 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
535 case ResourceType_Study: |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
536 db_->SetMetadata(study, it->first.second, it->second); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
537 break; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
538 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
539 case ResourceType_Series: |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
540 db_->SetMetadata(series, it->first.second, it->second); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
541 break; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
542 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
543 case ResourceType_Instance: |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
544 db_->SetMetadata(instance, it->first.second, it->second); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
545 break; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
546 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
547 default: |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
548 throw OrthancException(ErrorCode_ParameterOutOfRange); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
549 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
550 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
551 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
552 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
553 // Attach the auto-computed metadata for the patient/study/series levels |
432 | 554 std::string now = Toolbox::GetNowIsoString(); |
555 db_->SetMetadata(series, MetadataType_LastUpdate, now); | |
556 db_->SetMetadata(study, MetadataType_LastUpdate, now); | |
557 db_->SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
558 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
559 // Attach the auto-computed metadata for the instance level, |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
560 // reflecting these additions into the input metadata map |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
561 db_->SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); |
202 | 562 db_->SetMetadata(instance, MetadataType_Instance_RemoteAet, remoteAet); |
563 | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
564 if (metadata) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
565 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
566 (*metadata) [std::make_pair(ResourceType_Instance, MetadataType_Instance_ReceptionDate)] = now; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
567 (*metadata) [std::make_pair(ResourceType_Instance, MetadataType_Instance_RemoteAet)] = remoteAet; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
568 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
569 |
202 | 570 const DicomValue* value; |
571 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
572 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 573 { |
202 | 574 db_->SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->AsString()); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
575 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
576 if (metadata) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
577 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
578 (*metadata) [std::make_pair(ResourceType_Instance, MetadataType_Instance_IndexInSeries)] = value->AsString(); |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
579 } |
0 | 580 } |
581 | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
582 // Check whether the series of this new instance is now completed |
202 | 583 if (isNewSeries) |
584 { | |
433 | 585 ComputeExpectedNumberOfInstances(*db_, series, dicomSummary); |
202 | 586 } |
587 | |
205
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
588 SeriesStatus seriesStatus = GetSeriesStatus(series); |
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
589 if (seriesStatus == SeriesStatus_Complete) |
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
590 { |
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
591 db_->LogChange(ChangeType_CompletedSeries, series, ResourceType_Series); |
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
592 } |
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
593 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
594 // Mark the parent resources of this instance as unstable |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
595 MarkAsUnstable(patient, ResourceType_Patient); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
596 MarkAsUnstable(study, ResourceType_Study); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
597 MarkAsUnstable(series, ResourceType_Series); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
598 |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
599 t.Commit(instanceSize); |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
600 |
0 | 601 return StoreStatus_Success; |
602 } | |
62 | 603 catch (OrthancException& e) |
0 | 604 { |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
605 LOG(ERROR) << "EXCEPTION [" << e.What() << "]" |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
606 << " (SQLite status: " << db_->GetErrorMessage() << ")"; |
0 | 607 } |
608 | |
609 return StoreStatus_Failure; | |
610 } | |
611 | |
612 | |
238 | 613 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 614 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
615 boost::mutex::scoped_lock lock(mutex_); |
238 | 616 target = Json::objectValue; |
0 | 617 |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
618 uint64_t cs = currentStorageSize_; |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
619 assert(cs == db_->GetTotalCompressedSize()); |
238 | 620 uint64_t us = db_->GetTotalUncompressedSize(); |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
621 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 622 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
623 target["TotalDiskSizeMB"] = boost::lexical_cast<unsigned int>(cs / MEGA_BYTES); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
624 target["TotalUncompressedSizeMB"] = boost::lexical_cast<unsigned int>(us / MEGA_BYTES); |
238 | 625 |
626 target["CountPatients"] = static_cast<unsigned int>(db_->GetResourceCount(ResourceType_Patient)); | |
627 target["CountStudies"] = static_cast<unsigned int>(db_->GetResourceCount(ResourceType_Study)); | |
628 target["CountSeries"] = static_cast<unsigned int>(db_->GetResourceCount(ResourceType_Series)); | |
629 target["CountInstances"] = static_cast<unsigned int>(db_->GetResourceCount(ResourceType_Instance)); | |
630 } | |
631 | |
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
632 |
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
633 |
585 | 634 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 635 { |
636 // Get the expected number of instances in this series (from the metadata) | |
202 | 637 std::string s = db_->GetMetadata(id, MetadataType_Series_ExpectedNumberOfInstances); |
199 | 638 |
639 size_t expected; | |
640 try | |
641 { | |
642 expected = boost::lexical_cast<size_t>(s); | |
643 } | |
644 catch (boost::bad_lexical_cast&) | |
645 { | |
646 return SeriesStatus_Unknown; | |
647 } | |
648 | |
649 // Loop over the instances of this series | |
650 std::list<int64_t> children; | |
202 | 651 db_->GetChildrenInternalId(children, id); |
199 | 652 |
653 std::set<size_t> instances; | |
654 for (std::list<int64_t>::const_iterator | |
656 | 655 it = children.begin(); it != children.end(); ++it) |
199 | 656 { |
657 // Get the index of this instance in the series | |
202 | 658 s = db_->GetMetadata(*it, MetadataType_Instance_IndexInSeries); |
199 | 659 size_t index; |
660 try | |
661 { | |
662 index = boost::lexical_cast<size_t>(s); | |
663 } | |
664 catch (boost::bad_lexical_cast&) | |
665 { | |
666 return SeriesStatus_Unknown; | |
667 } | |
668 | |
656 | 669 if (!(index > 0 && index <= expected)) |
199 | 670 { |
671 // Out-of-range instance index | |
672 return SeriesStatus_Inconsistent; | |
673 } | |
674 | |
675 if (instances.find(index) != instances.end()) | |
676 { | |
677 // Twice the same instance index | |
678 return SeriesStatus_Inconsistent; | |
679 } | |
680 | |
681 instances.insert(index); | |
682 } | |
683 | |
684 if (instances.size() == expected) | |
685 { | |
686 return SeriesStatus_Complete; | |
687 } | |
688 else | |
689 { | |
690 return SeriesStatus_Missing; | |
691 } | |
692 } | |
693 | |
694 | |
695 | |
202 | 696 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
697 int64_t resourceId) | |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
698 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
699 DicomMap tags; |
202 | 700 db_->GetMainDicomTags(tags, resourceId); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
701 target["MainDicomTags"] = Json::objectValue; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
702 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags); |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
703 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
704 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
705 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 706 const std::string& publicId, |
707 ResourceType expectedType) | |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
708 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
709 result = Json::objectValue; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
710 |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
711 boost::mutex::scoped_lock lock(mutex_); |
199 | 712 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
713 // Lookup for the requested resource |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
714 int64_t id; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
715 ResourceType type; |
202 | 716 if (!db_->LookupResource(publicId, id, type) || |
199 | 717 type != expectedType) |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
718 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
719 return false; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
720 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
721 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
722 // Find the parent resource (if it exists) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
723 if (type != ResourceType_Patient) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
724 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
725 int64_t parentId; |
202 | 726 if (!db_->LookupParent(parentId, id)) |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
727 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
728 throw OrthancException(ErrorCode_InternalError); |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
729 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
730 |
202 | 731 std::string parent = db_->GetPublicId(parentId); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
732 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
733 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
734 { |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
735 case ResourceType_Study: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
736 result["ParentPatient"] = parent; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
737 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
738 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
739 case ResourceType_Series: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
740 result["ParentStudy"] = parent; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
741 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
742 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
743 case ResourceType_Instance: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
744 result["ParentSeries"] = parent; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
745 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
746 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
747 default: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
748 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
749 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
750 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
751 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
752 // List the children resources |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
753 std::list<std::string> children; |
202 | 754 db_->GetChildrenPublicId(children, id); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
755 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
756 if (type != ResourceType_Instance) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
757 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
758 Json::Value c = Json::arrayValue; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
759 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
760 for (std::list<std::string>::const_iterator |
656 | 761 it = children.begin(); it != children.end(); ++it) |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
762 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
763 c.append(*it); |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
764 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
765 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
766 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
767 { |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
768 case ResourceType_Patient: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
769 result["Studies"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
770 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
771 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
772 case ResourceType_Study: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
773 result["Series"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
774 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
775 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
776 case ResourceType_Series: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
777 result["Instances"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
778 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
779 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
780 default: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
781 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
782 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
783 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
784 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
785 // Set the resource type |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
786 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
787 { |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
788 case ResourceType_Patient: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
789 result["Type"] = "Patient"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
790 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
791 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
792 case ResourceType_Study: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
793 result["Type"] = "Study"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
794 break; |
199 | 795 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
796 case ResourceType_Series: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
797 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
798 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
799 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
800 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
801 int i; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
802 if (db_->GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
803 result["ExpectedNumberOfInstances"] = i; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
804 else |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
805 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
806 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
807 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
808 } |
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
809 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
810 case ResourceType_Instance: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
811 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
812 result["Type"] = "Instance"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
813 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
814 FileInfo attachment; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
815 if (!db_->LookupAttachment(attachment, id, FileContentType_Dicom)) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
816 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
817 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
818 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
819 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
820 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
821 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
822 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
823 int i; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
824 if (db_->GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
825 result["IndexInSeries"] = i; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
826 else |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
827 result["IndexInSeries"] = Json::nullValue; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
828 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
829 break; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
830 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
831 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
832 default: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
833 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
834 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
835 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
836 // Record the remaining information |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
837 result["ID"] = publicId; |
202 | 838 MainDicomTagsToJson(result, id); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
839 |
315 | 840 std::string tmp; |
841 | |
842 tmp = db_->GetMetadata(id, MetadataType_AnonymizedFrom); | |
843 if (tmp.size() != 0) | |
844 result["AnonymizedFrom"] = tmp; | |
845 | |
846 tmp = db_->GetMetadata(id, MetadataType_ModifiedFrom); | |
847 if (tmp.size() != 0) | |
848 result["ModifiedFrom"] = tmp; | |
849 | |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
850 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
851 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
852 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
853 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
854 result["IsStable"] = !unstableResources_.Contains(id); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
855 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
856 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
857 return true; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
858 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
859 |
0 | 860 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
861 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
862 const std::string& instanceUuid, |
233 | 863 FileContentType contentType) |
0 | 864 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
865 boost::mutex::scoped_lock lock(mutex_); |
0 | 866 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
867 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
868 ResourceType type; |
701 | 869 if (!db_->LookupResource(instanceUuid, id, type)) |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
870 { |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
871 throw OrthancException(ErrorCode_InternalError); |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
872 } |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
873 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
874 if (db_->LookupAttachment(attachment, id, contentType)) |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
875 { |
233 | 876 assert(attachment.GetContentType() == contentType); |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
877 return true; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
878 } |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
879 else |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
880 { |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
881 return false; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
882 } |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
883 } |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
884 |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
885 |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
886 |
0 | 887 void ServerIndex::GetAllUuids(Json::Value& target, |
190 | 888 ResourceType resourceType) |
0 | 889 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
890 boost::mutex::scoped_lock lock(mutex_); |
202 | 891 db_->GetAllPublicIds(target, resourceType); |
0 | 892 } |
893 | |
894 | |
895 bool ServerIndex::GetChanges(Json::Value& target, | |
204 | 896 int64_t since, |
0 | 897 unsigned int maxResults) |
898 { | |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
899 boost::mutex::scoped_lock lock(mutex_); |
237
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
900 db_->GetChanges(target, since, maxResults); |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
901 return true; |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
902 } |
0 | 903 |
237
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
904 bool ServerIndex::GetLastChange(Json::Value& target) |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
905 { |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
906 boost::mutex::scoped_lock lock(mutex_); |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
907 db_->GetLastChange(target); |
204 | 908 return true; |
0 | 909 } |
231 | 910 |
911 void ServerIndex::LogExportedResource(const std::string& publicId, | |
912 const std::string& remoteModality) | |
913 { | |
914 boost::mutex::scoped_lock lock(mutex_); | |
915 | |
916 int64_t id; | |
917 ResourceType type; | |
918 if (!db_->LookupResource(publicId, id, type)) | |
919 { | |
920 throw OrthancException(ErrorCode_InternalError); | |
921 } | |
922 | |
923 std::string patientId; | |
924 std::string studyInstanceUid; | |
925 std::string seriesInstanceUid; | |
926 std::string sopInstanceUid; | |
927 | |
928 int64_t currentId = id; | |
929 ResourceType currentType = type; | |
930 | |
931 // Iteratively go up inside the patient/study/series/instance hierarchy | |
932 bool done = false; | |
933 while (!done) | |
934 { | |
935 DicomMap map; | |
936 db_->GetMainDicomTags(map, currentId); | |
937 | |
938 switch (currentType) | |
939 { | |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
940 case ResourceType_Patient: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
941 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).AsString(); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
942 done = true; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
943 break; |
231 | 944 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
945 case ResourceType_Study: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
946 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString(); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
947 currentType = ResourceType_Patient; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
948 break; |
231 | 949 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
950 case ResourceType_Series: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
951 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString(); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
952 currentType = ResourceType_Study; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
953 break; |
231 | 954 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
955 case ResourceType_Instance: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
956 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).AsString(); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
957 currentType = ResourceType_Series; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
958 break; |
231 | 959 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
960 default: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
961 throw OrthancException(ErrorCode_InternalError); |
231 | 962 } |
963 | |
964 // If we have not reached the Patient level, find the parent of | |
965 // the current resource | |
966 if (!done) | |
967 { | |
375
d1ea72f1c967
major fix of storescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
315
diff
changeset
|
968 bool ok = db_->LookupParent(currentId, currentId); |
d1ea72f1c967
major fix of storescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
315
diff
changeset
|
969 assert(ok); |
231 | 970 } |
971 } | |
972 | |
973 // No need for a SQLite::Transaction here, as we only insert 1 record | |
974 db_->LogExportedResource(type, | |
975 publicId, | |
976 remoteModality, | |
977 patientId, | |
978 studyInstanceUid, | |
979 seriesInstanceUid, | |
980 sopInstanceUid); | |
981 } | |
982 | |
983 | |
984 bool ServerIndex::GetExportedResources(Json::Value& target, | |
985 int64_t since, | |
986 unsigned int maxResults) | |
987 { | |
988 boost::mutex::scoped_lock lock(mutex_); | |
989 db_->GetExportedResources(target, since, maxResults); | |
990 return true; | |
991 } | |
237
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
992 |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
993 bool ServerIndex::GetLastExportedResource(Json::Value& target) |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
994 { |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
995 boost::mutex::scoped_lock lock(mutex_); |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
996 db_->GetLastExportedResource(target); |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
997 return true; |
16a4ac70bd8a
last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
998 } |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
999 |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1000 |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1001 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1002 { |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1003 if (maximumStorageSize_ != 0) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1004 { |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
1005 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
1006 assert(db_->GetTotalCompressedSize() == currentSize); |
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
1007 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1008 if (currentSize + instanceSize > maximumStorageSize_) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1009 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1010 return true; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1011 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1012 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1013 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1014 if (maximumPatients_ != 0) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1015 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1016 uint64_t patientCount = db_->GetResourceCount(ResourceType_Patient); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1017 if (patientCount > maximumPatients_) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1018 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1019 return true; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1020 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1021 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1022 |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1023 return false; |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1024 } |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1025 |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1026 |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1027 void ServerIndex::Recycle(uint64_t instanceSize, |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1028 const std::string& newPatientId) |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1029 { |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1030 if (!IsRecyclingNeeded(instanceSize)) |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1031 { |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1032 return; |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1033 } |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1034 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1035 // Check whether other DICOM instances from this patient are |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1036 // already stored |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1037 int64_t patientToAvoid; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1038 ResourceType type; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1039 bool hasPatientToAvoid = db_->LookupResource(newPatientId, patientToAvoid, type); |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1040 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1041 if (hasPatientToAvoid && type != ResourceType_Patient) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1042 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1043 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1044 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1045 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1046 // Iteratively select patient to remove until there is enough |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1047 // space in the DICOM store |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1048 int64_t patientToRecycle; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1049 while (true) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1050 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1051 // If other instances of this patient are already in the store, |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1052 // we must avoid to recycle them |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1053 bool ok = hasPatientToAvoid ? |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1054 db_->SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1055 db_->SelectPatientToRecycle(patientToRecycle); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1056 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1057 if (!ok) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1058 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1059 throw OrthancException(ErrorCode_FullStorage); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1060 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1061 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1062 LOG(INFO) << "Recycling one patient"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1063 db_->DeleteResource(patientToRecycle); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1064 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1065 if (!IsRecyclingNeeded(instanceSize)) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1066 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1067 // OK, we're done |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1068 break; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1069 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1070 } |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
1071 } |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1072 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1073 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1074 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1075 boost::mutex::scoped_lock lock(mutex_); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1076 maximumPatients_ = count; |
270
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1077 |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1078 if (count == 0) |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1079 { |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1080 LOG(WARNING) << "No limit on the number of stored patients"; |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1081 } |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1082 else |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1083 { |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1084 LOG(WARNING) << "At most " << count << " patients will be stored"; |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1085 } |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1086 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1087 StandaloneRecycling(); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1088 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1089 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1090 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1091 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1092 boost::mutex::scoped_lock lock(mutex_); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1093 maximumStorageSize_ = size; |
270
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1094 |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1095 if (size == 0) |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1096 { |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1097 LOG(WARNING) << "No limit on the size of the storage area"; |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1098 } |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1099 else |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1100 { |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1101 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1102 } |
e6a4c4329481
parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
1103 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1104 StandaloneRecycling(); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1105 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1106 |
272
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1107 void ServerIndex::StandaloneRecycling() |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1108 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1109 // WARNING: No mutex here, do not include this as a public method |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
1110 Transaction t(*this); |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1111 Recycle(0, ""); |
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
1112 t.Commit(0); |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1113 } |
272
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1114 |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1115 |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1116 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1117 { |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1118 boost::mutex::scoped_lock lock(mutex_); |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1119 |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1120 // Lookup for the requested resource |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1121 int64_t id; |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1122 ResourceType type; |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1123 if (!db_->LookupResource(publicId, id, type) || |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1124 type != ResourceType_Patient) |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1125 { |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1126 throw OrthancException(ErrorCode_ParameterOutOfRange); |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1127 } |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1128 |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1129 return db_->IsProtectedPatient(id); |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1130 } |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1131 |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1132 |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1133 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1134 bool isProtected) |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1135 { |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1136 boost::mutex::scoped_lock lock(mutex_); |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1137 |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1138 // Lookup for the requested resource |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1139 int64_t id; |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1140 ResourceType type; |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1141 if (!db_->LookupResource(publicId, id, type) || |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1142 type != ResourceType_Patient) |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1143 { |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1144 throw OrthancException(ErrorCode_ParameterOutOfRange); |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1145 } |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1146 |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1147 // No need for a SQLite::Transaction here, as we only make 1 write to the DB |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1148 db_->SetProtectedPatient(id, isProtected); |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1149 |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1150 if (isProtected) |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1151 LOG(INFO) << "Patient " << publicId << " has been protected"; |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1152 else |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1153 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1154 } |
337c506461d2
protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
270
diff
changeset
|
1155 |
304 | 1156 |
714
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1157 void ServerIndex::GetChildren(std::list<std::string>& result, |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1158 const std::string& publicId) |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1159 { |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1160 result.clear(); |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1161 |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1162 boost::mutex::scoped_lock lock(mutex_); |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1163 |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1164 ResourceType type; |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1165 int64_t resource; |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1166 if (!db_->LookupResource(publicId, resource, type)) |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1167 { |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1168 throw OrthancException(ErrorCode_UnknownResource); |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1169 } |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1170 |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1171 if (type == ResourceType_Instance) |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1172 { |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1173 // An instance cannot have a child |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1174 throw OrthancException(ErrorCode_BadParameterType); |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1175 } |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1176 |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1177 std::list<int64_t> tmp; |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1178 db_->GetChildrenInternalId(tmp, resource); |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1179 |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1180 for (std::list<int64_t>::const_iterator |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1181 it = tmp.begin(); it != tmp.end(); ++it) |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1182 { |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1183 result.push_back(db_->GetPublicId(*it)); |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1184 } |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1185 } |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1186 |
6a1dbba0cca7
new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
704
diff
changeset
|
1187 |
304 | 1188 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1189 const std::string& publicId) | |
1190 { | |
1191 result.clear(); | |
1192 | |
1193 boost::mutex::scoped_lock lock(mutex_); | |
1194 | |
1195 ResourceType type; | |
1196 int64_t top; | |
1197 if (!db_->LookupResource(publicId, top, type)) | |
1198 { | |
1199 throw OrthancException(ErrorCode_UnknownResource); | |
1200 } | |
1201 | |
1202 if (type == ResourceType_Instance) | |
1203 { | |
1204 // The resource is already an instance: Do not go down the hierarchy | |
1205 result.push_back(publicId); | |
1206 return; | |
1207 } | |
1208 | |
1209 std::stack<int64_t> toExplore; | |
1210 toExplore.push(top); | |
1211 | |
1212 std::list<int64_t> tmp; | |
1213 | |
1214 while (!toExplore.empty()) | |
1215 { | |
1216 // Get the internal ID of the current resource | |
1217 int64_t resource = toExplore.top(); | |
1218 toExplore.pop(); | |
1219 | |
1220 if (db_->GetResourceType(resource) == ResourceType_Instance) | |
1221 { | |
1222 result.push_back(db_->GetPublicId(resource)); | |
1223 } | |
1224 else | |
1225 { | |
1226 // Tag all the children of this resource as to be explored | |
1227 db_->GetChildrenInternalId(tmp, resource); | |
1228 for (std::list<int64_t>::const_iterator | |
656 | 1229 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1230 { |
1231 toExplore.push(*it); | |
1232 } | |
1233 } | |
1234 } | |
1235 } | |
1236 | |
306
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1237 |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1238 void ServerIndex::SetMetadata(const std::string& publicId, |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1239 MetadataType type, |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1240 const std::string& value) |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1241 { |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1242 boost::mutex::scoped_lock lock(mutex_); |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1243 |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1244 ResourceType rtype; |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1245 int64_t id; |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1246 if (!db_->LookupResource(publicId, id, rtype)) |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1247 { |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1248 throw OrthancException(ErrorCode_UnknownResource); |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1249 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1250 |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1251 db_->SetMetadata(id, type, value); |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1252 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1253 |
438 | 1254 |
1255 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1256 MetadataType type) | |
1257 { | |
1258 boost::mutex::scoped_lock lock(mutex_); | |
1259 | |
1260 ResourceType rtype; | |
1261 int64_t id; | |
1262 if (!db_->LookupResource(publicId, id, rtype)) | |
1263 { | |
1264 throw OrthancException(ErrorCode_UnknownResource); | |
1265 } | |
1266 | |
1267 db_->DeleteMetadata(id, type); | |
1268 } | |
1269 | |
1270 | |
306
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1271 bool ServerIndex::LookupMetadata(std::string& target, |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1272 const std::string& publicId, |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1273 MetadataType type) |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1274 { |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1275 boost::mutex::scoped_lock lock(mutex_); |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1276 |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1277 ResourceType rtype; |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1278 int64_t id; |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1279 if (!db_->LookupResource(publicId, id, rtype)) |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1280 { |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1281 throw OrthancException(ErrorCode_UnknownResource); |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1282 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1283 |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1284 return db_->LookupMetadata(target, id, type); |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1285 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1286 |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1287 |
739 | 1288 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1289 const std::string& publicId) |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1290 { |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1291 boost::mutex::scoped_lock lock(mutex_); |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1292 |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1293 ResourceType rtype; |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1294 int64_t id; |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1295 if (!db_->LookupResource(publicId, id, rtype)) |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1296 { |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1297 throw OrthancException(ErrorCode_UnknownResource); |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1298 } |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1299 |
739 | 1300 db_->ListAvailableMetadata(target, id); |
436
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1301 } |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1302 |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1303 |
697
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1304 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1305 const std::string& publicId, |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1306 ResourceType expectedType) |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1307 { |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1308 boost::mutex::scoped_lock lock(mutex_); |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1309 |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1310 ResourceType type; |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1311 int64_t id; |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1312 if (!db_->LookupResource(publicId, id, type) || |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1313 expectedType != type) |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1314 { |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1315 throw OrthancException(ErrorCode_UnknownResource); |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1316 } |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1317 |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1318 db_->ListAvailableAttachments(target, id); |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1319 } |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1320 |
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1321 |
306
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1322 bool ServerIndex::LookupParent(std::string& target, |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1323 const std::string& publicId) |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1324 { |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1325 boost::mutex::scoped_lock lock(mutex_); |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1326 |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1327 ResourceType type; |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1328 int64_t id; |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1329 if (!db_->LookupResource(publicId, id, type)) |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1330 { |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1331 throw OrthancException(ErrorCode_UnknownResource); |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1332 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1333 |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1334 int64_t parentId; |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1335 if (db_->LookupParent(parentId, id)) |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1336 { |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1337 target = db_->GetPublicId(parentId); |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1338 return true; |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1339 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1340 else |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1341 { |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1342 return false; |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1343 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1344 } |
310 | 1345 |
1346 | |
1347 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1348 { | |
1349 boost::mutex::scoped_lock lock(mutex_); | |
311 | 1350 |
1351 std::auto_ptr<SQLite::Transaction> transaction(db_->StartTransaction()); | |
1352 | |
1353 transaction->Begin(); | |
1354 uint64_t seq = db_->IncrementGlobalSequence(sequence); | |
1355 transaction->Commit(); | |
1356 | |
1357 return seq; | |
310 | 1358 } |
315 | 1359 |
1360 | |
1361 | |
1362 void ServerIndex::LogChange(ChangeType changeType, | |
1363 const std::string& publicId) | |
1364 { | |
1365 boost::mutex::scoped_lock lock(mutex_); | |
1366 std::auto_ptr<SQLite::Transaction> transaction(db_->StartTransaction()); | |
1367 transaction->Begin(); | |
1368 | |
1369 int64_t id; | |
1370 ResourceType type; | |
1371 if (!db_->LookupResource(publicId, id, type)) | |
1372 { | |
1373 throw OrthancException(ErrorCode_UnknownResource); | |
1374 } | |
1375 | |
1376 db_->LogChange(changeType, id, type); | |
1377 | |
1378 transaction->Commit(); | |
1379 } | |
413
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1380 |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1381 |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1382 void ServerIndex::DeleteChanges() |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1383 { |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1384 boost::mutex::scoped_lock lock(mutex_); |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1385 db_->ClearTable("Changes"); |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1386 } |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1387 |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1388 void ServerIndex::DeleteExportedResources() |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1389 { |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1390 boost::mutex::scoped_lock lock(mutex_); |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1391 db_->ClearTable("ExportedResources"); |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1392 } |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1393 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1394 |
646 | 1395 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1396 /* out */ uint64_t& uncompressedSize, | |
1397 /* out */ unsigned int& countStudies, | |
1398 /* out */ unsigned int& countSeries, | |
1399 /* out */ unsigned int& countInstances, | |
1400 /* in */ int64_t id, | |
1401 /* in */ ResourceType type) | |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1402 { |
646 | 1403 std::stack<int64_t> toExplore; |
1404 toExplore.push(id); | |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1405 |
646 | 1406 countInstances = 0; |
1407 countSeries = 0; | |
1408 countStudies = 0; | |
1409 compressedSize = 0; | |
1410 uncompressedSize = 0; | |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1411 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1412 while (!toExplore.empty()) |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1413 { |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1414 // Get the internal ID of the current resource |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1415 int64_t resource = toExplore.top(); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1416 toExplore.pop(); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1417 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1418 ResourceType thisType = db_->GetResourceType(resource); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1419 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1420 std::list<FileContentType> f; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1421 db_->ListAvailableAttachments(f, resource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1422 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1423 for (std::list<FileContentType>::const_iterator |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1424 it = f.begin(); it != f.end(); ++it) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1425 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1426 FileInfo attachment; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1427 if (db_->LookupAttachment(attachment, resource, *it)) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1428 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1429 compressedSize += attachment.GetCompressedSize(); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1430 uncompressedSize += attachment.GetUncompressedSize(); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1431 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1432 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1433 |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1434 if (thisType == ResourceType_Instance) |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1435 { |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1436 countInstances++; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1437 } |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1438 else |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1439 { |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1440 switch (thisType) |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1441 { |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1442 case ResourceType_Study: |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1443 countStudies++; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1444 break; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1445 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1446 case ResourceType_Series: |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1447 countSeries++; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1448 break; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1449 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1450 default: |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1451 break; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1452 } |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1453 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1454 // Tag all the children of this resource as to be explored |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1455 std::list<int64_t> tmp; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1456 db_->GetChildrenInternalId(tmp, resource); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1457 for (std::list<int64_t>::const_iterator |
656 | 1458 it = tmp.begin(); it != tmp.end(); ++it) |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1459 { |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1460 toExplore.push(*it); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1461 } |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1462 } |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1463 } |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1464 |
646 | 1465 if (countStudies == 0) |
1466 { | |
1467 countStudies = 1; | |
1468 } | |
1469 | |
1470 if (countSeries == 0) | |
1471 { | |
1472 countSeries = 1; | |
1473 } | |
1474 } | |
1475 | |
1476 | |
1477 | |
1478 void ServerIndex::GetStatistics(Json::Value& target, | |
1479 const std::string& publicId) | |
1480 { | |
1481 boost::mutex::scoped_lock lock(mutex_); | |
1482 | |
1483 ResourceType type; | |
1484 int64_t top; | |
1485 if (!db_->LookupResource(publicId, top, type)) | |
1486 { | |
1487 throw OrthancException(ErrorCode_UnknownResource); | |
1488 } | |
1489 | |
1490 uint64_t uncompressedSize; | |
1491 uint64_t compressedSize; | |
1492 unsigned int countStudies; | |
1493 unsigned int countSeries; | |
1494 unsigned int countInstances; | |
1495 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1496 countSeries, countInstances, top, type); | |
1497 | |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1498 target = Json::objectValue; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1499 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1500 target["DiskSizeMB"] = boost::lexical_cast<unsigned int>(compressedSize / MEGA_BYTES); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1501 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1502 target["UncompressedSizeMB"] = boost::lexical_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1503 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1504 switch (type) |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1505 { |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1506 // Do NOT add "break" below this point! |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1507 case ResourceType_Patient: |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1508 target["CountStudies"] = countStudies; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1509 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1510 case ResourceType_Study: |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1511 target["CountSeries"] = countSeries; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1512 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1513 case ResourceType_Series: |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1514 target["CountInstances"] = countInstances; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1515 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1516 case ResourceType_Instance: |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1517 default: |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1518 break; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1519 } |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1520 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1521 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1522 |
646 | 1523 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1524 /* out */ uint64_t& uncompressedSize, | |
1525 /* out */ unsigned int& countStudies, | |
1526 /* out */ unsigned int& countSeries, | |
1527 /* out */ unsigned int& countInstances, | |
1528 const std::string& publicId) | |
1529 { | |
1530 boost::mutex::scoped_lock lock(mutex_); | |
1531 | |
1532 ResourceType type; | |
1533 int64_t top; | |
1534 if (!db_->LookupResource(publicId, top, type)) | |
1535 { | |
1536 throw OrthancException(ErrorCode_UnknownResource); | |
1537 } | |
1538 | |
1539 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1540 countSeries, countInstances, top, type); | |
1541 } | |
1542 | |
1543 | |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1544 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1545 { |
810
401a9633e492
configuration into a namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
744
diff
changeset
|
1546 int stableAge = Configuration::GetGlobalIntegerParameter("StableAge", 60); |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1547 if (stableAge <= 0) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1548 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1549 stableAge = 60; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1550 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1551 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1552 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1553 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1554 while (!that->done_) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1555 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1556 // Check for stable resources each second |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1557 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1558 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1559 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1560 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1561 while (!that->unstableResources_.IsEmpty() && |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1562 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1563 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1564 // This DICOM resource has not received any new instance for |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1565 // some time. It can be considered as stable. |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1566 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1567 UnstableResourcePayload payload; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1568 int64_t id = that->unstableResources_.RemoveOldest(payload); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1569 |
513 | 1570 // Ensure that the resource is still existing before logging the change |
1571 if (that->db_->IsExistingResource(id)) | |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1572 { |
513 | 1573 switch (payload.type_) |
1574 { | |
1575 case Orthanc::ResourceType_Patient: | |
1576 that->db_->LogChange(ChangeType_StablePatient, id, ResourceType_Patient); | |
1577 break; | |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1578 |
513 | 1579 case Orthanc::ResourceType_Study: |
1580 that->db_->LogChange(ChangeType_StableStudy, id, ResourceType_Study); | |
1581 break; | |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1582 |
513 | 1583 case Orthanc::ResourceType_Series: |
1584 that->db_->LogChange(ChangeType_StableSeries, id, ResourceType_Series); | |
1585 break; | |
1586 | |
1587 default: | |
1588 throw OrthancException(ErrorCode_InternalError); | |
1589 } | |
1590 | |
1591 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1592 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1593 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1594 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1595 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1596 LOG(INFO) << "Closing the monitor thread for stable resources"; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1597 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1598 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1599 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1600 void ServerIndex::MarkAsUnstable(int64_t id, |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1601 Orthanc::ResourceType type) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1602 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1603 // WARNING: Before calling this method, "mutex_" must be locked. |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1604 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1605 assert(type == Orthanc::ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1606 type == Orthanc::ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1607 type == Orthanc::ResourceType_Series); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1608 |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1609 unstableResources_.AddOrMakeMostRecent(id, type); |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1610 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1611 } |
521 | 1612 |
1613 | |
1614 | |
1615 void ServerIndex::LookupTagValue(std::list<std::string>& result, | |
1616 DicomTag tag, | |
615 | 1617 const std::string& value, |
1618 ResourceType type) | |
1619 { | |
1620 result.clear(); | |
1621 | |
1622 boost::mutex::scoped_lock lock(mutex_); | |
1623 | |
1624 std::list<int64_t> id; | |
1625 db_->LookupTagValue(id, tag, value); | |
1626 | |
1627 for (std::list<int64_t>::const_iterator | |
656 | 1628 it = id.begin(); it != id.end(); ++it) |
615 | 1629 { |
1630 if (db_->GetResourceType(*it) == type) | |
1631 { | |
1632 result.push_back(db_->GetPublicId(*it)); | |
1633 } | |
1634 } | |
1635 } | |
1636 | |
1637 | |
1638 void ServerIndex::LookupTagValue(std::list<std::string>& result, | |
1639 DicomTag tag, | |
521 | 1640 const std::string& value) |
1641 { | |
1642 result.clear(); | |
1643 | |
1644 boost::mutex::scoped_lock lock(mutex_); | |
1645 | |
1646 std::list<int64_t> id; | |
1647 db_->LookupTagValue(id, tag, value); | |
1648 | |
1649 for (std::list<int64_t>::const_iterator | |
656 | 1650 it = id.begin(); it != id.end(); ++it) |
521 | 1651 { |
1652 result.push_back(db_->GetPublicId(*it)); | |
1653 } | |
1654 } | |
1655 | |
1656 | |
1657 void ServerIndex::LookupTagValue(std::list<std::string>& result, | |
1658 const std::string& value) | |
1659 { | |
1660 result.clear(); | |
1661 | |
1662 boost::mutex::scoped_lock lock(mutex_); | |
1663 | |
1664 std::list<int64_t> id; | |
1665 db_->LookupTagValue(id, value); | |
1666 | |
1667 for (std::list<int64_t>::const_iterator | |
656 | 1668 it = id.begin(); it != id.end(); ++it) |
521 | 1669 { |
1670 result.push_back(db_->GetPublicId(*it)); | |
1671 } | |
1672 } | |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1673 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1674 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1675 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1676 const std::string& publicId) |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1677 { |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1678 boost::mutex::scoped_lock lock(mutex_); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1679 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1680 Transaction t(*this); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1681 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1682 ResourceType resourceType; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1683 int64_t resourceId; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1684 if (!db_->LookupResource(publicId, resourceId, resourceType)) |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1685 { |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1686 return StoreStatus_Failure; // Inexistent resource |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1687 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1688 |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1689 // Remove possible previous attachment |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1690 db_->DeleteAttachment(resourceId, attachment.GetContentType()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1691 |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1692 // Locate the patient of the target resource |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1693 int64_t patientId = resourceId; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1694 for (;;) |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1695 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1696 int64_t parent; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1697 if (db_->LookupParent(parent, patientId)) |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1698 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1699 // We have not reached the patient level yet |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1700 patientId = parent; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1701 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1702 else |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1703 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1704 // We have reached the patient level |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1705 break; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1706 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1707 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1708 |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1709 // Possibly apply the recycling mechanism while preserving this patient |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1710 assert(db_->GetResourceType(patientId) == ResourceType_Patient); |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1711 Recycle(attachment.GetCompressedSize(), db_->GetPublicId(patientId)); |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
1712 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1713 db_->AddAttachment(resourceId, attachment); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1714 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1715 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1716 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1717 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1718 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1719 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1720 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1721 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1722 FileContentType type) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1723 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1724 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1725 listener_->Reset(); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1726 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1727 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1728 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1729 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1730 int64_t id; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1731 if (!db_->LookupResource(publicId, id, rtype)) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1732 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1733 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1734 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1735 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1736 db_->DeleteAttachment(id, type); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1737 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1738 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1739 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1740 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1741 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1742 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1743 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1744 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1745 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1746 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1747 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1748 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1749 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1750 int64_t id; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1751 if (!db_->LookupResource(publicId, id, type)) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1752 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1753 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1754 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1755 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1756 std::list<MetadataType> metadata; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1757 db_->ListAvailableMetadata(metadata, id); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1758 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1759 for (std::list<MetadataType>::const_iterator |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1760 it = metadata.begin(); it != metadata.end(); it++) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1761 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1762 std::string key = EnumerationToString(*it); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1763 std::string value = db_->GetMetadata(id, *it); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1764 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1765 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1766 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1767 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1768 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1769 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
1770 |
0 | 1771 } |