Mercurial > hg > orthanc
annotate OrthancServer/ServerContext.cpp @ 1004:a226e0959d8b lua-scripting
DicomInstanceToStore
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 08 Jul 2014 14:06:05 +0200 |
parents | b067017a8a5b |
children | 84b6d7bca6db |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
689 | 3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, |
224 | 4 * Belgium |
5 * | |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
10 * | |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
22 * | |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
224 | 34 #include "ServerContext.h" |
35 | |
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36 #include "../Core/HttpServer/FilesystemHttpSender.h" |
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37 #include "../Core/Lua/LuaFunctionCall.h" |
795 | 38 #include "FromDcmtkBridge.h" |
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39 #include "ServerToolbox.h" |
771 | 40 #include "OrthancInitialization.h" |
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41 |
224 | 42 #include <glog/logging.h> |
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43 #include <EmbeddedResources.h> |
794 | 44 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 45 |
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46 |
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47 #include "Scheduler/DeleteInstanceCommand.h" |
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48 #include "Scheduler/StoreScuCommand.h" |
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49 |
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50 |
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51 |
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52 #define ENABLE_DICOM_CACHE 1 |
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53 |
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54 static const char* RECEIVED_INSTANCE_FILTER = "ReceivedInstanceFilter"; |
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55 static const char* ON_STORED_INSTANCE = "OnStoredInstance"; |
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56 |
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57 static const size_t DICOM_CACHE_SIZE = 2; |
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58 |
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59 /** |
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60 * IMPORTANT: We make the assumption that the same instance of |
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61 * FileStorage can be accessed from multiple threads. This seems OK |
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62 * since the filesystem implements the required locking mechanisms, |
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63 * but maybe a read-writer lock on the "FileStorage" could be |
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64 * useful. Conversely, "ServerIndex" already implements mutex-based |
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65 * locking. |
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66 **/ |
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67 |
224 | 68 namespace Orthanc |
69 { | |
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70 ServerContext::ServerContext(const boost::filesystem::path& storagePath, |
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71 const boost::filesystem::path& indexPath) : |
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72 storage_(storagePath.string()), |
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73 index_(*this, indexPath.string()), |
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74 accessor_(storage_), |
656 | 75 compressionEnabled_(false), |
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76 provider_(*this), |
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77 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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78 scheduler_(Configuration::GetGlobalIntegerParameter("LimitJobs", 10)) |
224 | 79 { |
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80 scu_.SetLocalApplicationEntityTitle(Configuration::GetGlobalStringParameter("DicomAet", "ORTHANC")); |
774 | 81 //scu_.SetMillisecondsBeforeClose(1); // The connection is always released |
82 | |
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83 lua_.Execute(Orthanc::EmbeddedResources::LUA_TOOLBOX); |
224 | 84 } |
85 | |
236 | 86 void ServerContext::SetCompressionEnabled(bool enabled) |
87 { | |
88 if (enabled) | |
89 LOG(WARNING) << "Disk compression is enabled"; | |
90 else | |
91 LOG(WARNING) << "Disk compression is disabled"; | |
92 | |
93 compressionEnabled_ = enabled; | |
94 } | |
95 | |
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96 void ServerContext::RemoveFile(const std::string& fileUuid) |
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97 { |
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98 storage_.Remove(fileUuid); |
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99 } |
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100 |
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101 |
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102 bool ServerContext::ApplyReceivedInstanceFilter(const Json::Value& simplified, |
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103 const std::string& remoteAet) |
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104 { |
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105 LuaContextLocker locker(*this); |
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106 |
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107 if (locker.GetLua().IsExistingFunction(RECEIVED_INSTANCE_FILTER)) |
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108 { |
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109 LuaFunctionCall call(locker.GetLua(), RECEIVED_INSTANCE_FILTER); |
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110 call.PushJson(simplified); |
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111 call.PushString(remoteAet); |
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112 |
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113 if (!call.ExecutePredicate()) |
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114 { |
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115 return false; |
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116 } |
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117 } |
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118 |
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119 return true; |
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120 } |
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121 |
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122 |
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123 void ServerContext::ApplyOnStoredInstance(const std::string& instanceId, |
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124 const Json::Value& simplifiedDicom, |
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125 const Json::Value& metadata) |
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126 { |
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127 LuaContextLocker locker(*this); |
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128 |
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129 if (locker.GetLua().IsExistingFunction(ON_STORED_INSTANCE)) |
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130 { |
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131 LuaFunctionCall call(locker.GetLua(), ON_STORED_INSTANCE); |
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132 call.PushString(instanceId); |
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133 call.PushJson(simplifiedDicom); |
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134 call.PushJson(metadata); |
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135 |
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136 Json::Value result; |
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137 call.ExecuteToJson(result); |
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138 |
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139 printf("TODO\n"); |
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140 std::cout << result; |
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141 } |
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142 |
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143 #if 1 |
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144 { |
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145 // Autorouting test |
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146 RemoteModalityParameters p = Configuration::GetModalityUsingSymbolicName("sample"); |
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147 |
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148 ServerJob job; |
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149 ServerCommandInstance& a = job.AddCommand(new StoreScuCommand(*this, p)); |
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150 a.AddInput(instanceId); |
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151 |
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152 /*ServerCommandInstance& b = job.AddCommand(new DeleteInstanceCommand(*this)); |
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153 a.ConnectNext(b);*/ |
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154 |
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155 job.SetDescription("Autorouting test"); |
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156 scheduler_.Submit(job); |
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157 } |
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158 #endif |
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159 } |
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160 |
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161 |
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162 StoreStatus ServerContext::Store(std::string& resultPublicId, |
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163 DicomInstanceToStore& dicom) |
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164 { |
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165 try |
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166 { |
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167 DicomInstanceHasher hasher(dicom.GetSummary()); |
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168 resultPublicId = hasher.HashInstance(); |
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169 |
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170 Json::Value simplified; |
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171 SimplifyTags(simplified, dicom.GetJson()); |
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172 |
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173 // Test if the instance must be filtered out |
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174 if (!ApplyReceivedInstanceFilter(simplified, dicom.GetRemoteAet())) |
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175 { |
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176 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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177 return StoreStatus_FilteredOut; |
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178 } |
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179 |
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180 if (compressionEnabled_) |
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181 { |
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182 accessor_.SetCompressionForNextOperations(CompressionType_Zlib); |
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183 } |
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184 else |
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185 { |
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186 accessor_.SetCompressionForNextOperations(CompressionType_None); |
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187 } |
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188 |
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189 FileInfo dicomInfo = accessor_.Write(dicom.GetBufferData(), dicom.GetBufferSize(), FileContentType_Dicom); |
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190 FileInfo jsonInfo = accessor_.Write(dicom.GetJson().toStyledString(), FileContentType_DicomAsJson); |
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191 |
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192 ServerIndex::Attachments attachments; |
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193 attachments.push_back(dicomInfo); |
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194 attachments.push_back(jsonInfo); |
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195 |
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196 StoreStatus status = index_.Store(dicom.GetSummary(), attachments, dicom.GetRemoteAet(), dicom.GetMetadata()); |
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197 |
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198 if (status != StoreStatus_Success) |
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199 { |
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200 storage_.Remove(dicomInfo.GetUuid()); |
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201 storage_.Remove(jsonInfo.GetUuid()); |
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202 } |
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203 |
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204 switch (status) |
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205 { |
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206 case StoreStatus_Success: |
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207 LOG(INFO) << "New instance stored"; |
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208 break; |
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209 |
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210 case StoreStatus_AlreadyStored: |
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211 LOG(INFO) << "Already stored"; |
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212 break; |
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213 |
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214 case StoreStatus_Failure: |
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215 LOG(ERROR) << "Store failure"; |
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216 break; |
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217 |
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218 default: |
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219 // This should never happen |
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220 break; |
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221 } |
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222 |
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223 if (status == StoreStatus_Success || |
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224 status == StoreStatus_AlreadyStored) |
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225 { |
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226 try |
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227 { |
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228 Json::Value metadata = Json::objectValue; |
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229 for (ServerIndex::MetadataMap::const_iterator |
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230 it = dicom.GetMetadata().begin(); |
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231 it != dicom.GetMetadata().end(); ++it) |
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232 { |
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233 if (it->first.first == ResourceType_Instance) |
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234 { |
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235 metadata[EnumerationToString(it->first.second)] = it->second; |
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236 } |
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237 } |
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238 |
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239 ApplyOnStoredInstance(resultPublicId, simplified, metadata); |
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240 } |
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241 catch (OrthancException&) |
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242 { |
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243 LOG(ERROR) << "Error when dealing with OnStoredInstance"; |
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244 } |
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245 } |
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246 |
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247 return status; |
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248 } |
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249 catch (OrthancException& e) |
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250 { |
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251 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
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252 { |
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253 LogMissingRequiredTag(dicom.GetSummary()); |
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254 } |
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255 |
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256 throw; |
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257 } |
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258 } |
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259 |
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260 |
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261 |
304 | 262 StoreStatus ServerContext::Store(const char* dicomInstance, |
224 | 263 size_t dicomSize, |
264 const DicomMap& dicomSummary, | |
265 const Json::Value& dicomJson, | |
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266 const std::string& remoteAet, |
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267 const ServerIndex::MetadataMap& metadata) |
224 | 268 { |
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269 Json::Value simplified; |
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270 SimplifyTags(simplified, dicomJson); |
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271 |
397
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272 // Test if the instance must be filtered out |
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273 if (!ApplyReceivedInstanceFilter(simplified, remoteAet)) |
397
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274 { |
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275 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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276 return StoreStatus_FilteredOut; |
397
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277 } |
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278 |
236 | 279 if (compressionEnabled_) |
280 { | |
281 accessor_.SetCompressionForNextOperations(CompressionType_Zlib); | |
282 } | |
283 else | |
284 { | |
285 accessor_.SetCompressionForNextOperations(CompressionType_None); | |
286 } | |
232
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287 |
304 | 288 FileInfo dicomInfo = accessor_.Write(dicomInstance, dicomSize, FileContentType_Dicom); |
697
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289 FileInfo jsonInfo = accessor_.Write(dicomJson.toStyledString(), FileContentType_DicomAsJson); |
232
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290 |
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291 ServerIndex::Attachments attachments; |
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292 attachments.push_back(dicomInfo); |
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293 attachments.push_back(jsonInfo); |
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294 |
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295 // TODO REMOVE CONST_CAST !!!! |
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296 StoreStatus status = index_.Store(dicomSummary, attachments, remoteAet, const_cast<ServerIndex::MetadataMap&>(metadata)); |
224 | 297 |
298 if (status != StoreStatus_Success) | |
299 { | |
232
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300 storage_.Remove(dicomInfo.GetUuid()); |
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301 storage_.Remove(jsonInfo.GetUuid()); |
224 | 302 } |
303 | |
304 switch (status) | |
305 { | |
397
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306 case StoreStatus_Success: |
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307 LOG(INFO) << "New instance stored"; |
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308 break; |
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309 |
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310 case StoreStatus_AlreadyStored: |
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311 LOG(INFO) << "Already stored"; |
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312 break; |
224 | 313 |
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314 case StoreStatus_Failure: |
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315 LOG(ERROR) << "Store failure"; |
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316 break; |
224 | 317 |
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318 default: |
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319 // This should never happen |
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320 break; |
224 | 321 } |
322 | |
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323 if (status == StoreStatus_Success || |
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324 status == StoreStatus_AlreadyStored) |
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325 { |
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326 try |
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327 { |
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328 DicomInstanceHasher hasher(dicomSummary); |
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329 std::string instanceId = hasher.HashInstance(); |
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330 |
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331 Json::Value metadata; |
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332 index_.GetMetadata(metadata, instanceId); |
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333 |
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334 ApplyOnStoredInstance(instanceId, simplified, metadata); |
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335 } |
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336 catch (OrthancException&) |
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337 { |
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338 LOG(ERROR) << "Error when dealing with OnStoredInstance"; |
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339 } |
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340 } |
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341 |
224 | 342 return status; |
343 } | |
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344 |
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345 |
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346 void ServerContext::AnswerDicomFile(RestApiOutput& output, |
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347 const std::string& instancePublicId, |
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348 FileContentType content) |
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349 { |
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350 FileInfo attachment; |
236 | 351 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
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352 { |
236 | 353 throw OrthancException(ErrorCode_InternalError); |
354 } | |
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355 |
236 | 356 accessor_.SetCompressionForNextOperations(attachment.GetCompressionType()); |
320 | 357 |
236 | 358 std::auto_ptr<HttpFileSender> sender(accessor_.ConstructHttpFileSender(attachment.GetUuid())); |
320 | 359 sender->SetContentType("application/dicom"); |
360 sender->SetDownloadFilename(instancePublicId + ".dcm"); | |
236 | 361 output.AnswerFile(*sender); |
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362 } |
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363 |
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364 |
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365 void ServerContext::ReadJson(Json::Value& result, |
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366 const std::string& instancePublicId) |
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367 { |
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368 std::string s; |
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369 ReadFile(s, instancePublicId, FileContentType_DicomAsJson); |
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370 |
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371 Json::Reader reader; |
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372 if (!reader.parse(s, result)) |
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373 { |
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374 throw OrthancException("Corrupted JSON file"); |
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375 } |
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376 } |
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377 |
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378 |
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379 void ServerContext::ReadFile(std::string& result, |
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380 const std::string& instancePublicId, |
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381 FileContentType content, |
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382 bool uncompressIfNeeded) |
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383 { |
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384 FileInfo attachment; |
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385 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
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386 { |
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387 throw OrthancException(ErrorCode_InternalError); |
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388 } |
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389 |
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390 if (uncompressIfNeeded) |
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391 { |
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392 accessor_.SetCompressionForNextOperations(attachment.GetCompressionType()); |
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393 } |
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394 else |
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395 { |
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396 accessor_.SetCompressionForNextOperations(CompressionType_None); |
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397 } |
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398 |
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399 accessor_.Read(result, attachment.GetUuid()); |
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400 } |
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401 |
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402 |
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403 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
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404 { |
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405 std::string content; |
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406 context_.ReadFile(content, instancePublicId, FileContentType_Dicom); |
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407 return new ParsedDicomFile(content); |
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408 } |
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409 |
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410 |
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411 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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412 const std::string& instancePublicId) : |
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413 that_(that) |
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414 { |
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415 #if ENABLE_DICOM_CACHE == 0 |
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416 static std::auto_ptr<IDynamicObject> p; |
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417 p.reset(provider_.Provide(instancePublicId)); |
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418 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
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419 #else |
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420 that_.dicomCacheMutex_.lock(); |
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421 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
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422 #endif |
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423 } |
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424 |
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425 |
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426 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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427 { |
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428 #if ENABLE_DICOM_CACHE == 0 |
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429 #else |
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430 that_.dicomCacheMutex_.unlock(); |
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431 #endif |
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432 } |
304 | 433 |
434 | |
792 | 435 static DcmFileFormat& GetDicom(ParsedDicomFile& file) |
436 { | |
437 return *reinterpret_cast<DcmFileFormat*>(file.GetDcmtkObject()); | |
438 } | |
439 | |
440 | |
304 | 441 StoreStatus ServerContext::Store(std::string& resultPublicId, |
791 | 442 ParsedDicomFile& dicomInstance, |
304 | 443 const char* dicomBuffer, |
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444 size_t dicomSize, |
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445 const ServerIndex::MetadataMap& metadata) |
304 | 446 { |
447 DicomMap dicomSummary; | |
792 | 448 FromDcmtkBridge::Convert(dicomSummary, *GetDicom(dicomInstance).getDataset()); |
304 | 449 |
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450 try |
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451 { |
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452 DicomInstanceHasher hasher(dicomSummary); |
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453 resultPublicId = hasher.HashInstance(); |
304 | 454 |
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455 Json::Value dicomJson; |
792 | 456 FromDcmtkBridge::ToJson(dicomJson, *GetDicom(dicomInstance).getDataset()); |
304 | 457 |
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458 StoreStatus status = StoreStatus_Failure; |
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459 if (dicomSize > 0) |
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460 { |
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461 status = Store(dicomBuffer, dicomSize, dicomSummary, dicomJson, "", metadata); |
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462 } |
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463 |
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464 return status; |
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465 } |
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466 catch (OrthancException& e) |
304 | 467 { |
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468 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
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469 { |
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470 LogMissingRequiredTag(dicomSummary); |
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471 } |
304 | 472 |
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473 throw; |
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474 } |
304 | 475 } |
476 | |
477 | |
478 StoreStatus ServerContext::Store(std::string& resultPublicId, | |
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479 ParsedDicomFile& dicomInstance, |
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480 const ServerIndex::MetadataMap& metadata) |
304 | 481 { |
482 std::string buffer; | |
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483 if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer, *GetDicom(dicomInstance).getDataset())) |
304 | 484 { |
485 throw OrthancException(ErrorCode_InternalError); | |
486 } | |
487 | |
488 if (buffer.size() == 0) | |
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489 return Store(resultPublicId, dicomInstance, NULL, 0, metadata); |
304 | 490 else |
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491 return Store(resultPublicId, dicomInstance, &buffer[0], buffer.size(), metadata); |
304 | 492 } |
493 | |
494 | |
495 StoreStatus ServerContext::Store(std::string& resultPublicId, | |
496 const char* dicomBuffer, | |
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497 size_t dicomSize, |
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498 const ServerIndex::MetadataMap& metadata) |
304 | 499 { |
500 ParsedDicomFile dicom(dicomBuffer, dicomSize); | |
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501 return Store(resultPublicId, dicom, dicomBuffer, dicomSize, metadata); |
304 | 502 } |
503 | |
791 | 504 |
505 StoreStatus ServerContext::Store(std::string& resultPublicId, | |
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506 const std::string& dicomContent, |
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507 const ServerIndex::MetadataMap& metadata) |
791 | 508 { |
509 if (dicomContent.size() == 0) | |
510 { | |
511 return Store(resultPublicId, NULL, 0); | |
512 } | |
513 else | |
514 { | |
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515 return Store(resultPublicId, &dicomContent[0], dicomContent.size(), metadata); |
791 | 516 } |
517 } | |
518 | |
519 | |
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520 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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521 { |
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522 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
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523 accessor_.SetStoreMD5(storeMD5); |
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524 } |
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525 |
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526 |
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527 bool ServerContext::AddAttachment(const std::string& resourceId, |
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528 FileContentType attachmentType, |
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529 const void* data, |
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530 size_t size) |
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531 { |
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532 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
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533 |
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534 if (compressionEnabled_) |
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535 { |
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536 accessor_.SetCompressionForNextOperations(CompressionType_Zlib); |
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537 } |
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538 else |
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539 { |
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540 accessor_.SetCompressionForNextOperations(CompressionType_None); |
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541 } |
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542 |
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543 FileInfo info = accessor_.Write(data, size, attachmentType); |
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544 StoreStatus status = index_.AddAttachment(info, resourceId); |
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545 |
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546 if (status != StoreStatus_Success) |
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547 { |
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548 storage_.Remove(info.GetUuid()); |
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549 return false; |
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550 } |
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551 else |
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552 { |
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553 return true; |
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554 } |
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555 } |
224 | 556 } |