annotate Core/SerializationToolbox.cpp @ 3860:9ccbbd55bc23

allow Keeping the SOPInstanceUID in /instances/../modify
author Alain Mazy <alain@mazy.be>
date Fri, 24 Apr 2020 17:30:41 +0200
parents f6a73611ec5c
children 09798f2b985f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "PrecompiledHeaders.h"
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35 #include "SerializationToolbox.h"
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36
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37 #include "OrthancException.h"
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38
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39 #if ORTHANC_ENABLE_DCMTK == 1
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40 # include "DicomParsing/FromDcmtkBridge.h"
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41 #endif
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42
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43 namespace Orthanc
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44 {
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45 namespace SerializationToolbox
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46 {
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47 static bool ParseTagInternal(DicomTag& tag,
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48 const char* name)
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49 {
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50 #if ORTHANC_ENABLE_DCMTK == 1
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51 try
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52 {
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53 tag = FromDcmtkBridge::ParseTag(name);
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54 return true;
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55 }
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56 catch (OrthancException&)
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57 {
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58 return false;
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59 }
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60 #else
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61 return DicomTag::ParseHexadecimal(tag, name);
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62 #endif
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63 }
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64
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65
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66 std::string ReadString(const Json::Value& value,
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67 const std::string& field)
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68 {
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69 if (value.type() != Json::objectValue ||
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70 !value.isMember(field.c_str()) ||
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71 value[field.c_str()].type() != Json::stringValue)
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72 {
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73 throw OrthancException(ErrorCode_BadFileFormat,
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74 "String value expected in field: " + field);
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75 }
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76 else
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77 {
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78 return value[field.c_str()].asString();
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79 }
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80 }
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81
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82
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83 int ReadInteger(const Json::Value& value,
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84 const std::string& field)
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85 {
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86 if (value.type() != Json::objectValue ||
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87 !value.isMember(field.c_str()) ||
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88 (value[field.c_str()].type() != Json::intValue &&
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89 value[field.c_str()].type() != Json::uintValue))
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90 {
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91 throw OrthancException(ErrorCode_BadFileFormat,
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92 "Integer value expected in field: " + field);
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93 }
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94 else
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95 {
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96 return value[field.c_str()].asInt();
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97 }
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98 }
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99
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100
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101 unsigned int ReadUnsignedInteger(const Json::Value& value,
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102 const std::string& field)
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103 {
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104 int tmp = ReadInteger(value, field);
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105
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106 if (tmp < 0)
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107 {
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108 throw OrthancException(ErrorCode_BadFileFormat,
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109 "Unsigned integer value expected in field: " + field);
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110 }
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111 else
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112 {
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113 return static_cast<unsigned int>(tmp);
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114 }
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115 }
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116
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117
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118 bool ReadBoolean(const Json::Value& value,
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119 const std::string& field)
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120 {
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121 if (value.type() != Json::objectValue ||
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122 !value.isMember(field.c_str()) ||
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123 value[field.c_str()].type() != Json::booleanValue)
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124 {
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125 throw OrthancException(ErrorCode_BadFileFormat,
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126 "Boolean value expected in field: " + field);
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127 }
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128 else
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129 {
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130 return value[field.c_str()].asBool();
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131 }
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132 }
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133
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134
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135 void ReadArrayOfStrings(std::vector<std::string>& target,
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136 const Json::Value& value,
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137 const std::string& field)
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138 {
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139 if (value.type() != Json::objectValue ||
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140 !value.isMember(field.c_str()) ||
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141 value[field.c_str()].type() != Json::arrayValue)
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142 {
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143 throw OrthancException(ErrorCode_BadFileFormat,
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144 "List of strings expected in field: " + field);
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145 }
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146
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147 const Json::Value& arr = value[field.c_str()];
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148
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149 target.resize(arr.size());
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150
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151 for (Json::Value::ArrayIndex i = 0; i < arr.size(); i++)
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152 {
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153 if (arr[i].type() != Json::stringValue)
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154 {
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155 throw OrthancException(ErrorCode_BadFileFormat,
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156 "List of strings expected in field: " + field);
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157 }
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158 else
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159 {
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160 target[i] = arr[i].asString();
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161 }
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162 }
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163 }
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164
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165
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166 void ReadListOfStrings(std::list<std::string>& target,
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167 const Json::Value& value,
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168 const std::string& field)
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169 {
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170 std::vector<std::string> tmp;
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171 ReadArrayOfStrings(tmp, value, field);
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172
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173 target.clear();
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174 for (size_t i = 0; i < tmp.size(); i++)
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175 {
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176 target.push_back(tmp[i]);
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177 }
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178 }
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179
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180
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181 void ReadSetOfStrings(std::set<std::string>& target,
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182 const Json::Value& value,
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183 const std::string& field)
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184 {
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185 std::vector<std::string> tmp;
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186 ReadArrayOfStrings(tmp, value, field);
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187
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188 target.clear();
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189 for (size_t i = 0; i < tmp.size(); i++)
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190 {
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191 target.insert(tmp[i]);
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192 }
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193 }
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194
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195
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196 void ReadSetOfTags(std::set<DicomTag>& target,
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197 const Json::Value& value,
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198 const std::string& field)
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199 {
47d812308d63 serialization of DicomModification
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200 if (value.type() != Json::objectValue ||
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201 !value.isMember(field.c_str()) ||
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202 value[field.c_str()].type() != Json::arrayValue)
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203 {
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204 throw OrthancException(ErrorCode_BadFileFormat,
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205 "Set of DICOM tags expected in field: " + field);
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206 }
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207
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208 const Json::Value& arr = value[field.c_str()];
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209
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210 target.clear();
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211
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212 for (Json::Value::ArrayIndex i = 0; i < arr.size(); i++)
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213 {
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214 DicomTag tag(0, 0);
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215
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216 if (arr[i].type() != Json::stringValue ||
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217 !ParseTagInternal(tag, arr[i].asCString()))
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218 {
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219 throw OrthancException(ErrorCode_BadFileFormat,
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220 "Set of DICOM tags expected in field: " + field);
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221 }
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222 else
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223 {
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224 target.insert(tag);
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225 }
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226 }
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227 }
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228
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229
2845
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230 void ReadMapOfStrings(std::map<std::string, std::string>& target,
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231 const Json::Value& value,
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232 const std::string& field)
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233 {
218e2c864d1d serialization of SplitStudyJob
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234 if (value.type() != Json::objectValue ||
218e2c864d1d serialization of SplitStudyJob
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diff changeset
235 !value.isMember(field.c_str()) ||
218e2c864d1d serialization of SplitStudyJob
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diff changeset
236 value[field.c_str()].type() != Json::objectValue)
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diff changeset
237 {
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238 throw OrthancException(ErrorCode_BadFileFormat,
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239 "Associative array of strings to strings expected in field: " + field);
2845
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240 }
218e2c864d1d serialization of SplitStudyJob
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diff changeset
241
218e2c864d1d serialization of SplitStudyJob
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diff changeset
242 const Json::Value& source = value[field.c_str()];
218e2c864d1d serialization of SplitStudyJob
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243
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diff changeset
244 target.clear();
218e2c864d1d serialization of SplitStudyJob
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245
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246 Json::Value::Members members = source.getMemberNames();
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247
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248 for (size_t i = 0; i < members.size(); i++)
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249 {
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250 const Json::Value& tmp = source[members[i]];
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251
218e2c864d1d serialization of SplitStudyJob
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252 if (tmp.type() != Json::stringValue)
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253 {
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254 throw OrthancException(ErrorCode_BadFileFormat,
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255 "Associative array of string to strings expected in field: " + field);
2845
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diff changeset
256 }
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diff changeset
257 else
218e2c864d1d serialization of SplitStudyJob
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258 {
218e2c864d1d serialization of SplitStudyJob
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259 target[members[i]] = tmp.asString();
218e2c864d1d serialization of SplitStudyJob
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260 }
218e2c864d1d serialization of SplitStudyJob
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261 }
218e2c864d1d serialization of SplitStudyJob
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262 }
218e2c864d1d serialization of SplitStudyJob
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263
218e2c864d1d serialization of SplitStudyJob
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diff changeset
264
218e2c864d1d serialization of SplitStudyJob
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diff changeset
265 void ReadMapOfTags(std::map<DicomTag, std::string>& target,
218e2c864d1d serialization of SplitStudyJob
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diff changeset
266 const Json::Value& value,
218e2c864d1d serialization of SplitStudyJob
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diff changeset
267 const std::string& field)
218e2c864d1d serialization of SplitStudyJob
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diff changeset
268 {
218e2c864d1d serialization of SplitStudyJob
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diff changeset
269 if (value.type() != Json::objectValue ||
218e2c864d1d serialization of SplitStudyJob
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diff changeset
270 !value.isMember(field.c_str()) ||
218e2c864d1d serialization of SplitStudyJob
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parents: 2662
diff changeset
271 value[field.c_str()].type() != Json::objectValue)
218e2c864d1d serialization of SplitStudyJob
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diff changeset
272 {
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273 throw OrthancException(ErrorCode_BadFileFormat,
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diff changeset
274 "Associative array of DICOM tags to strings expected in field: " + field);
2845
218e2c864d1d serialization of SplitStudyJob
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diff changeset
275 }
218e2c864d1d serialization of SplitStudyJob
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diff changeset
276
218e2c864d1d serialization of SplitStudyJob
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diff changeset
277 const Json::Value& source = value[field.c_str()];
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278
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279 target.clear();
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280
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281 Json::Value::Members members = source.getMemberNames();
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282
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283 for (size_t i = 0; i < members.size(); i++)
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284 {
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285 const Json::Value& tmp = source[members[i]];
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286
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287 DicomTag tag(0, 0);
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288
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289 if (!ParseTagInternal(tag, members[i].c_str()) ||
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290 tmp.type() != Json::stringValue)
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291 {
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292 throw OrthancException(ErrorCode_BadFileFormat,
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293 "Associative array of DICOM tags to strings expected in field: " + field);
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294 }
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295 else
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296 {
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297 target[tag] = tmp.asString();
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298 }
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299 }
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300 }
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301
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302
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303 void WriteArrayOfStrings(Json::Value& target,
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304 const std::vector<std::string>& values,
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305 const std::string& field)
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306 {
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307 if (target.type() != Json::objectValue ||
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308 target.isMember(field.c_str()))
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309 {
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310 throw OrthancException(ErrorCode_BadFileFormat);
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311 }
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312
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313 Json::Value& value = target[field];
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314
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315 value = Json::arrayValue;
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316 for (size_t i = 0; i < values.size(); i++)
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317 {
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318 value.append(values[i]);
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319 }
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320 }
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321
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322
3638
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323 void WriteListOfStrings(Json::Value& target,
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324 const std::list<std::string>& values,
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325 const std::string& field)
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326 {
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327 if (target.type() != Json::objectValue ||
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328 target.isMember(field.c_str()))
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329 {
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330 throw OrthancException(ErrorCode_BadFileFormat);
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331 }
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332
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333 Json::Value& value = target[field];
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334
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335 value = Json::arrayValue;
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336
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337 for (std::list<std::string>::const_iterator it = values.begin();
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338 it != values.end(); ++it)
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339 {
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340 value.append(*it);
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341 }
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342 }
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343
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344
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345 void WriteSetOfStrings(Json::Value& target,
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346 const std::set<std::string>& values,
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347 const std::string& field)
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348 {
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349 if (target.type() != Json::objectValue ||
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350 target.isMember(field.c_str()))
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351 {
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352 throw OrthancException(ErrorCode_BadFileFormat);
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353 }
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354
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355 Json::Value& value = target[field];
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356
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357 value = Json::arrayValue;
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358
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359 for (std::set<std::string>::const_iterator it = values.begin();
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360 it != values.end(); ++it)
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361 {
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362 value.append(*it);
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363 }
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364 }
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365
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366
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367 void WriteSetOfTags(Json::Value& target,
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368 const std::set<DicomTag>& tags,
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369 const std::string& field)
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370 {
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371 if (target.type() != Json::objectValue ||
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372 target.isMember(field.c_str()))
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373 {
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374 throw OrthancException(ErrorCode_BadFileFormat);
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375 }
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376
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377 Json::Value& value = target[field];
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378
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379 value = Json::arrayValue;
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380
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381 for (std::set<DicomTag>::const_iterator it = tags.begin();
47d812308d63 serialization of DicomModification
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382 it != tags.end(); ++it)
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383 {
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384 value.append(it->Format());
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385 }
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386 }
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387
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388
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389 void WriteMapOfStrings(Json::Value& target,
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390 const std::map<std::string, std::string>& values,
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391 const std::string& field)
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392 {
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393 if (target.type() != Json::objectValue ||
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394 target.isMember(field.c_str()))
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395 {
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396 throw OrthancException(ErrorCode_BadFileFormat);
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397 }
218e2c864d1d serialization of SplitStudyJob
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diff changeset
398
218e2c864d1d serialization of SplitStudyJob
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399 Json::Value& value = target[field];
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400
218e2c864d1d serialization of SplitStudyJob
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401 value = Json::objectValue;
218e2c864d1d serialization of SplitStudyJob
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diff changeset
402
218e2c864d1d serialization of SplitStudyJob
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diff changeset
403 for (std::map<std::string, std::string>::const_iterator
218e2c864d1d serialization of SplitStudyJob
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404 it = values.begin(); it != values.end(); ++it)
218e2c864d1d serialization of SplitStudyJob
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405 {
218e2c864d1d serialization of SplitStudyJob
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406 value[it->first] = it->second;
218e2c864d1d serialization of SplitStudyJob
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407 }
218e2c864d1d serialization of SplitStudyJob
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408 }
218e2c864d1d serialization of SplitStudyJob
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409
218e2c864d1d serialization of SplitStudyJob
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diff changeset
410
218e2c864d1d serialization of SplitStudyJob
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411 void WriteMapOfTags(Json::Value& target,
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diff changeset
412 const std::map<DicomTag, std::string>& values,
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diff changeset
413 const std::string& field)
218e2c864d1d serialization of SplitStudyJob
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diff changeset
414 {
218e2c864d1d serialization of SplitStudyJob
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415 if (target.type() != Json::objectValue ||
218e2c864d1d serialization of SplitStudyJob
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diff changeset
416 target.isMember(field.c_str()))
218e2c864d1d serialization of SplitStudyJob
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diff changeset
417 {
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
418 throw OrthancException(ErrorCode_BadFileFormat);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
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419 }
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
420
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
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421 Json::Value& value = target[field];
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
422
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
423 value = Json::objectValue;
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
424
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
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425 for (std::map<DicomTag, std::string>::const_iterator
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
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426 it = values.begin(); it != values.end(); ++it)
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
427 {
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
428 value[it->first.Format()] = it->second;
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
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429 }
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
430 }
2656
a6d3e45eeff5 SerializationToolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 }
a6d3e45eeff5 SerializationToolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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432 }