Mercurial > hg > orthanc
annotate OrthancServer/Sources/Database/StatelessDatabaseOperations.h @ 4798:96ab170294fd storage-cache
typo
author | Alain Mazy <am@osimis.io> |
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date | Thu, 07 Oct 2021 13:45:36 +0200 |
parents | 569d9ef165b1 |
children | f0038043fb97 7053502fbf97 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #pragma once |
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35 |
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36 #include "../../../OrthancFramework/Sources/DicomFormat/DicomMap.h" |
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37 |
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38 #include "IDatabaseWrapper.h" |
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39 #include "../DicomInstanceOrigin.h" |
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40 |
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41 #include <boost/shared_ptr.hpp> |
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42 #include <boost/thread/shared_mutex.hpp> |
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43 |
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44 |
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45 namespace Orthanc |
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46 { |
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47 class DatabaseLookup; |
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48 class ParsedDicomFile; |
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50 |
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51 class StatelessDatabaseOperations : public boost::noncopyable |
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52 { |
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53 public: |
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54 typedef std::list<FileInfo> Attachments; |
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; |
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56 |
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57 class ITransactionContext : public IDatabaseListener |
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58 { |
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59 public: |
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60 virtual ~ITransactionContext() |
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61 { |
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62 } |
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63 |
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64 virtual void Commit() = 0; |
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65 |
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66 virtual int64_t GetCompressedSizeDelta() = 0; |
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67 |
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68 virtual bool IsUnstableResource(int64_t id) = 0; |
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69 |
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70 virtual bool LookupRemainingLevel(std::string& remainingPublicId /* out */, |
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71 ResourceType& remainingLevel /* out */) = 0; |
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72 |
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73 virtual void MarkAsUnstable(int64_t id, |
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74 Orthanc::ResourceType type, |
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75 const std::string& publicId) = 0; |
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76 |
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77 virtual void SignalAttachmentsAdded(uint64_t compressedSize) = 0; |
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78 |
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79 virtual void SignalChange(const ServerIndexChange& change) = 0; |
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80 }; |
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81 |
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82 |
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83 class ITransactionContextFactory : public boost::noncopyable |
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84 { |
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85 public: |
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86 virtual ~ITransactionContextFactory() |
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87 { |
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88 } |
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89 |
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90 // WARNING: This method can be invoked from several threads concurrently |
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91 virtual ITransactionContext* Create() = 0; |
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92 }; |
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93 |
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94 |
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95 class ReadOnlyTransaction : public boost::noncopyable |
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96 { |
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97 private: |
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98 ITransactionContext& context_; |
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99 |
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100 protected: |
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101 IDatabaseWrapper::ITransaction& transaction_; |
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102 |
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103 public: |
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104 explicit ReadOnlyTransaction(IDatabaseWrapper::ITransaction& transaction, |
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105 ITransactionContext& context) : |
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106 context_(context), |
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107 transaction_(transaction) |
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108 { |
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109 } |
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110 |
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111 ITransactionContext& GetTransactionContext() |
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112 { |
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113 return context_; |
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114 } |
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115 |
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116 /** |
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117 * Higher-level constructions |
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118 **/ |
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119 |
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120 SeriesStatus GetSeriesStatus(int64_t id, |
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121 int64_t expectedNumberOfInstances); |
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122 |
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123 |
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124 /** |
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125 * Read-only methods from "IDatabaseWrapper" |
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126 **/ |
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127 |
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128 void ApplyLookupResources(std::list<std::string>& resourcesId, |
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129 std::list<std::string>* instancesId, // Can be NULL if not needed |
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130 const std::vector<DatabaseConstraint>& lookup, |
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131 ResourceType queryLevel, |
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132 size_t limit) |
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133 { |
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134 return transaction_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit); |
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135 } |
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136 |
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137 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
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138 int64_t id) |
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139 { |
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140 transaction_.GetAllMetadata(target, id); |
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141 } |
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142 |
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143 void GetAllPublicIds(std::list<std::string>& target, |
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144 ResourceType resourceType) |
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145 { |
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146 return transaction_.GetAllPublicIds(target, resourceType); |
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147 } |
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148 |
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149 void GetAllPublicIds(std::list<std::string>& target, |
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150 ResourceType resourceType, |
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151 size_t since, |
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152 size_t limit) |
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153 { |
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154 return transaction_.GetAllPublicIds(target, resourceType, since, limit); |
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155 } |
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156 |
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157 void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
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158 bool& done /*out*/, |
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159 int64_t since, |
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160 uint32_t maxResults) |
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161 { |
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162 transaction_.GetChanges(target, done, since, maxResults); |
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163 } |
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164 |
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165 void GetChildrenInternalId(std::list<int64_t>& target, |
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166 int64_t id) |
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167 { |
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168 transaction_.GetChildrenInternalId(target, id); |
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169 } |
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170 |
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171 void GetChildrenPublicId(std::list<std::string>& target, |
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172 int64_t id) |
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173 { |
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174 transaction_.GetChildrenPublicId(target, id); |
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175 } |
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176 |
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177 void GetExportedResources(std::list<ExportedResource>& target /*out*/, |
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178 bool& done /*out*/, |
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179 int64_t since, |
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180 uint32_t maxResults) |
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181 { |
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182 return transaction_.GetExportedResources(target, done, since, maxResults); |
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183 } |
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184 |
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185 void GetLastChange(std::list<ServerIndexChange>& target /*out*/) |
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186 { |
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187 transaction_.GetLastChange(target); |
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188 } |
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189 |
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190 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/) |
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191 { |
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192 return transaction_.GetLastExportedResource(target); |
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193 } |
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194 |
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195 int64_t GetLastChangeIndex() |
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196 { |
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197 return transaction_.GetLastChangeIndex(); |
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198 } |
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199 |
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200 void GetMainDicomTags(DicomMap& map, |
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201 int64_t id) |
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202 { |
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203 transaction_.GetMainDicomTags(map, id); |
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204 } |
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205 |
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206 std::string GetPublicId(int64_t resourceId) |
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207 { |
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208 return transaction_.GetPublicId(resourceId); |
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209 } |
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210 |
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211 uint64_t GetResourcesCount(ResourceType resourceType) |
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212 { |
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213 return transaction_.GetResourcesCount(resourceType); |
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214 } |
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215 |
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216 ResourceType GetResourceType(int64_t resourceId) |
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217 { |
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218 return transaction_.GetResourceType(resourceId); |
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219 } |
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220 |
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221 uint64_t GetTotalCompressedSize() |
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222 { |
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223 return transaction_.GetTotalCompressedSize(); |
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224 } |
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225 |
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226 uint64_t GetTotalUncompressedSize() |
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227 { |
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228 return transaction_.GetTotalUncompressedSize(); |
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229 } |
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230 |
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231 bool IsProtectedPatient(int64_t internalId) |
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232 { |
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233 return transaction_.IsProtectedPatient(internalId); |
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234 } |
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235 |
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236 void ListAvailableAttachments(std::set<FileContentType>& target, |
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237 int64_t id) |
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238 { |
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239 transaction_.ListAvailableAttachments(target, id); |
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240 } |
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241 |
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242 bool LookupAttachment(FileInfo& attachment, |
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243 int64_t& revision, |
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244 int64_t id, |
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245 FileContentType contentType) |
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246 { |
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247 return transaction_.LookupAttachment(attachment, revision, id, contentType); |
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248 } |
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249 |
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250 bool LookupGlobalProperty(std::string& target, |
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251 GlobalProperty property, |
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252 bool shared) |
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253 { |
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254 return transaction_.LookupGlobalProperty(target, property, shared); |
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255 } |
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256 |
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257 bool LookupMetadata(std::string& target, |
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258 int64_t& revision, |
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259 int64_t id, |
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260 MetadataType type) |
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261 { |
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262 return transaction_.LookupMetadata(target, revision, id, type); |
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263 } |
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264 |
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265 bool LookupParent(int64_t& parentId, |
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266 int64_t resourceId) |
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267 { |
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268 return transaction_.LookupParent(parentId, resourceId); |
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269 } |
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270 |
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271 bool LookupResource(int64_t& id, |
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272 ResourceType& type, |
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273 const std::string& publicId) |
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274 { |
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275 return transaction_.LookupResource(id, type, publicId); |
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276 } |
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277 |
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278 bool LookupResourceAndParent(int64_t& id, |
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279 ResourceType& type, |
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280 std::string& parentPublicId, |
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281 const std::string& publicId) |
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282 { |
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283 return transaction_.LookupResourceAndParent(id, type, parentPublicId, publicId); |
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284 } |
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285 }; |
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286 |
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287 |
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288 class ReadWriteTransaction : public ReadOnlyTransaction |
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289 { |
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290 public: |
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291 ReadWriteTransaction(IDatabaseWrapper::ITransaction& transaction, |
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292 ITransactionContext& context) : |
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293 ReadOnlyTransaction(transaction, context) |
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294 { |
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295 } |
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296 |
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297 void AddAttachment(int64_t id, |
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298 const FileInfo& attachment, |
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299 int64_t revision) |
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300 { |
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301 transaction_.AddAttachment(id, attachment, revision); |
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302 } |
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303 |
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304 void ClearChanges() |
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305 { |
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306 transaction_.ClearChanges(); |
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307 } |
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308 |
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309 void ClearExportedResources() |
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310 { |
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311 transaction_.ClearExportedResources(); |
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312 } |
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313 |
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314 void ClearMainDicomTags(int64_t id) |
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315 { |
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316 return transaction_.ClearMainDicomTags(id); |
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317 } |
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318 |
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319 bool CreateInstance(IDatabaseWrapper::CreateInstanceResult& result, /* out */ |
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320 int64_t& instanceId, /* out */ |
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321 const std::string& patient, |
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322 const std::string& study, |
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323 const std::string& series, |
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324 const std::string& instance) |
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325 { |
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326 return transaction_.CreateInstance(result, instanceId, patient, study, series, instance); |
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327 } |
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328 |
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329 void DeleteAttachment(int64_t id, |
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330 FileContentType attachment) |
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331 { |
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332 return transaction_.DeleteAttachment(id, attachment); |
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333 } |
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334 |
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335 void DeleteMetadata(int64_t id, |
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336 MetadataType type) |
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337 { |
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338 transaction_.DeleteMetadata(id, type); |
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339 } |
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340 |
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341 void DeleteResource(int64_t id) |
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342 { |
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343 transaction_.DeleteResource(id); |
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344 } |
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345 |
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346 void LogChange(int64_t internalId, |
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347 ChangeType changeType, |
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348 ResourceType resourceType, |
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349 const std::string& publicId); |
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350 |
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351 void LogExportedResource(const ExportedResource& resource) |
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352 { |
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353 transaction_.LogExportedResource(resource); |
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354 } |
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355 |
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356 void SetGlobalProperty(GlobalProperty property, |
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357 bool shared, |
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358 const std::string& value) |
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359 { |
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360 transaction_.SetGlobalProperty(property, shared, value); |
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361 } |
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362 |
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363 void SetMetadata(int64_t id, |
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364 MetadataType type, |
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365 const std::string& value, |
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366 int64_t revision) |
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367 { |
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368 return transaction_.SetMetadata(id, type, value, revision); |
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369 } |
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370 |
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371 void SetProtectedPatient(int64_t internalId, |
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372 bool isProtected) |
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373 { |
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374 transaction_.SetProtectedPatient(internalId, isProtected); |
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375 } |
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376 |
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377 void SetResourcesContent(const ResourcesContent& content) |
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378 { |
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379 transaction_.SetResourcesContent(content); |
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380 } |
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381 |
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382 void Recycle(uint64_t maximumStorageSize, |
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383 unsigned int maximumPatients, |
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384 uint64_t addedInstanceSize, |
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385 const std::string& newPatientId); |
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386 }; |
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387 |
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388 |
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389 class IReadOnlyOperations : public boost::noncopyable |
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390 { |
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391 public: |
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392 virtual ~IReadOnlyOperations() |
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393 { |
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394 } |
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395 |
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396 virtual void Apply(ReadOnlyTransaction& transaction) = 0; |
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397 }; |
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398 |
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399 |
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400 class IReadWriteOperations : public boost::noncopyable |
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401 { |
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402 public: |
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403 virtual ~IReadWriteOperations() |
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404 { |
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405 } |
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406 |
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407 virtual void Apply(ReadWriteTransaction& transaction) = 0; |
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408 }; |
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409 |
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410 |
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411 private: |
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412 class MainDicomTagsRegistry; |
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413 class Transaction; |
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414 |
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415 IDatabaseWrapper& db_; |
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416 boost::shared_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; // "shared_ptr" because of PImpl |
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417 bool hasFlushToDisk_; |
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418 |
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419 // Mutex to protect the configuration options |
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420 boost::shared_mutex mutex_; |
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421 std::unique_ptr<ITransactionContextFactory> factory_; |
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422 unsigned int maxRetries_; |
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423 |
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424 void NormalizeLookup(std::vector<DatabaseConstraint>& target, |
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425 const DatabaseLookup& source, |
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426 ResourceType level) const; |
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427 |
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428 void ApplyInternal(IReadOnlyOperations* readOperations, |
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429 IReadWriteOperations* writeOperations); |
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430 |
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431 protected: |
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432 void StandaloneRecycling(uint64_t maximumStorageSize, |
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433 unsigned int maximumPatientCount); |
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434 |
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435 public: |
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436 explicit StatelessDatabaseOperations(IDatabaseWrapper& database); |
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437 |
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438 void SetTransactionContextFactory(ITransactionContextFactory* factory /* takes ownership */); |
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439 |
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440 // Only used to handle "ErrorCode_DatabaseCannotSerialize" in the |
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441 // case of collision between multiple writers |
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442 void SetMaxDatabaseRetries(unsigned int maxRetries); |
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443 |
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444 // It is assumed that "GetDatabaseVersion()" can run out of a |
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445 // database transaction |
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446 unsigned int GetDatabaseVersion() |
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447 { |
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448 return db_.GetDatabaseVersion(); |
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449 } |
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450 |
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451 void FlushToDisk(); |
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452 |
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453 bool HasFlushToDisk() const |
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454 { |
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455 return hasFlushToDisk_; |
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456 } |
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457 |
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458 void Apply(IReadOnlyOperations& operations); |
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459 |
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460 void Apply(IReadWriteOperations& operations); |
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461 |
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462 bool ExpandResource(Json::Value& target, |
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463 const std::string& publicId, |
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464 ResourceType level, |
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465 DicomToJsonFormat format); |
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466 |
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467 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
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468 const std::string& publicId, |
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469 ResourceType level); |
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470 |
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471 void GetAllUuids(std::list<std::string>& target, |
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472 ResourceType resourceType); |
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473 |
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474 void GetAllUuids(std::list<std::string>& target, |
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475 ResourceType resourceType, |
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476 size_t since, |
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477 size_t limit); |
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478 |
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479 void GetGlobalStatistics(/* out */ uint64_t& diskSize, |
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480 /* out */ uint64_t& uncompressedSize, |
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481 /* out */ uint64_t& countPatients, |
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482 /* out */ uint64_t& countStudies, |
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483 /* out */ uint64_t& countSeries, |
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484 /* out */ uint64_t& countInstances); |
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485 |
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486 bool LookupAttachment(FileInfo& attachment, |
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487 int64_t& revision, |
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488 const std::string& instancePublicId, |
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489 FileContentType contentType); |
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490 |
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491 void GetChanges(Json::Value& target, |
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492 int64_t since, |
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493 unsigned int maxResults); |
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494 |
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495 void GetLastChange(Json::Value& target); |
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496 |
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497 void GetExportedResources(Json::Value& target, |
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498 int64_t since, |
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499 unsigned int maxResults); |
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500 |
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501 void GetLastExportedResource(Json::Value& target); |
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502 |
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503 bool IsProtectedPatient(const std::string& publicId); |
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504 |
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505 void GetChildren(std::list<std::string>& result, |
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506 const std::string& publicId); |
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507 |
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508 void GetChildInstances(std::list<std::string>& result, |
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509 const std::string& publicId); |
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510 |
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511 bool LookupMetadata(std::string& target, |
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512 int64_t& revision, |
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513 const std::string& publicId, |
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514 ResourceType expectedType, |
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515 MetadataType type); |
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516 |
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517 void ListAvailableAttachments(std::set<FileContentType>& target, |
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518 const std::string& publicId, |
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519 ResourceType expectedType); |
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520 |
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521 bool LookupParent(std::string& target, |
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522 const std::string& publicId); |
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523 |
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524 void GetResourceStatistics(/* out */ ResourceType& type, |
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525 /* out */ uint64_t& diskSize, |
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526 /* out */ uint64_t& uncompressedSize, |
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527 /* out */ unsigned int& countStudies, |
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528 /* out */ unsigned int& countSeries, |
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529 /* out */ unsigned int& countInstances, |
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530 /* out */ uint64_t& dicomDiskSize, |
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|
531 /* out */ uint64_t& dicomUncompressedSize, |
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532 const std::string& publicId); |
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533 |
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534 void LookupIdentifierExact(std::vector<std::string>& result, |
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|
535 ResourceType level, |
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536 const DicomTag& tag, |
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537 const std::string& value); |
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538 |
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|
539 bool LookupGlobalProperty(std::string& value, |
4607
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differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
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4595
diff
changeset
|
540 GlobalProperty property, |
f75c63aa9de0
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4595
diff
changeset
|
541 bool shared); |
4586
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diff
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|
542 |
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diff
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|
543 std::string GetGlobalProperty(GlobalProperty property, |
4607
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differentiating between shared and private global properties
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4595
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changeset
|
544 bool shared, |
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|
545 const std::string& defaultValue); |
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|
546 |
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|
547 bool GetMainDicomTags(DicomMap& result, |
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|
548 const std::string& publicId, |
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diff
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|
549 ResourceType expectedType, |
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|
550 ResourceType levelOfInterest); |
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|
551 |
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diff
changeset
|
552 // Only applicable at the instance level |
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changeset
|
553 bool GetAllMainDicomTags(DicomMap& result, |
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diff
changeset
|
554 const std::string& instancePublicId); |
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|
555 |
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|
556 bool LookupResourceType(ResourceType& type, |
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changeset
|
557 const std::string& publicId); |
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|
558 |
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changeset
|
559 bool LookupParent(std::string& target, |
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|
560 const std::string& publicId, |
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|
561 ResourceType parentType); |
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|
562 |
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|
563 void ApplyLookupResources(std::vector<std::string>& resourcesId, |
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|
564 std::vector<std::string>* instancesId, // Can be NULL if not needed |
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|
565 const DatabaseLookup& lookup, |
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changeset
|
566 ResourceType queryLevel, |
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parents:
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changeset
|
567 size_t limit); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
568 |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4640
diff
changeset
|
569 bool DeleteResource(Json::Value& remainingAncestor /* out */, |
4586
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changeset
|
570 const std::string& uuid, |
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|
571 ResourceType expectedType); |
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diff
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|
572 |
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changeset
|
573 void LogExportedResource(const std::string& publicId, |
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diff
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|
574 const std::string& remoteModality); |
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diff
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|
575 |
1d96fe7e054e
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diff
changeset
|
576 void SetProtectedPatient(const std::string& publicId, |
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|
577 bool isProtected); |
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diff
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|
578 |
4623
95ffe3b6ef7c
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parents:
4613
diff
changeset
|
579 void SetMetadata(int64_t& newRevision /*out*/, |
95ffe3b6ef7c
handling of revisions for metadata
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parents:
4613
diff
changeset
|
580 const std::string& publicId, |
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
581 MetadataType type, |
4623
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handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4613
diff
changeset
|
582 const std::string& value, |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4613
diff
changeset
|
583 bool hasOldRevision, |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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584 int64_t oldRevision, |
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585 const std::string& oldMD5); |
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586 |
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587 // Same as "SetMetadata()", but doesn't care about revisions |
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588 void OverwriteMetadata(const std::string& publicId, |
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589 MetadataType type, |
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590 const std::string& value); |
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591 |
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592 bool DeleteMetadata(const std::string& publicId, |
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593 MetadataType type, |
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594 bool hasRevision, |
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595 int64_t revision, |
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596 const std::string& md5); |
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597 |
4607
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598 uint64_t IncrementGlobalSequence(GlobalProperty sequence, |
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599 bool shared); |
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600 |
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601 void DeleteChanges(); |
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602 |
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603 void DeleteExportedResources(); |
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604 |
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605 void SetGlobalProperty(GlobalProperty property, |
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606 bool shared, |
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607 const std::string& value); |
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608 |
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609 bool DeleteAttachment(const std::string& publicId, |
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610 FileContentType type, |
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611 bool hasRevision, |
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612 int64_t revision, |
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613 const std::string& md5); |
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614 |
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615 void LogChange(int64_t internalId, |
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616 ChangeType changeType, |
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617 const std::string& publicId, |
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618 ResourceType level); |
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619 |
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620 void ReconstructInstance(const ParsedDicomFile& dicom); |
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621 |
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622 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, |
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623 const DicomMap& dicomSummary, |
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624 const Attachments& attachments, |
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625 const MetadataMap& metadata, |
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626 const DicomInstanceOrigin& origin, |
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627 bool overwrite, |
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628 bool hasTransferSyntax, |
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629 DicomTransferSyntax transferSyntax, |
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630 bool hasPixelDataOffset, |
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631 uint64_t pixelDataOffset, |
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632 uint64_t maximumStorageSize, |
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633 unsigned int maximumPatients); |
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634 |
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635 StoreStatus AddAttachment(int64_t& newRevision /*out*/, |
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636 const FileInfo& attachment, |
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637 const std::string& publicId, |
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638 uint64_t maximumStorageSize, |
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639 unsigned int maximumPatients, |
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640 bool hasOldRevision, |
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641 int64_t oldRevision, |
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642 const std::string& oldMd5); |
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643 }; |
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644 } |