Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/IDicomTranscoder.cpp @ 4941:96a3e81eba90 more-tags
performance warning
author | Alain Mazy <am@osimis.io> |
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date | Wed, 16 Mar 2022 09:50:33 +0100 |
parents | 43e613a7756b |
children | 60cb4b379485 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU Lesser General Public License |
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10 * as published by the Free Software Foundation, either version 3 of |
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11 * the License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * Lesser General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
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21 **/ |
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22 |
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23 |
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24 #include "../PrecompiledHeaders.h" |
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25 #include "IDicomTranscoder.h" |
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26 |
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27 #include "../OrthancException.h" |
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28 #include "FromDcmtkBridge.h" |
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29 #include "ParsedDicomFile.h" |
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30 |
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31 #include <dcmtk/dcmdata/dcfilefo.h> |
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32 #include <dcmtk/dcmdata/dcdeftag.h> |
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33 |
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34 namespace Orthanc |
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35 { |
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36 IDicomTranscoder::TranscodingType IDicomTranscoder::GetTranscodingType(DicomTransferSyntax target, |
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37 DicomTransferSyntax source) |
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38 { |
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39 if (target == source) |
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40 { |
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41 return TranscodingType_Lossless; |
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42 } |
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43 else if (target == DicomTransferSyntax_LittleEndianImplicit || |
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44 target == DicomTransferSyntax_LittleEndianExplicit || |
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45 target == DicomTransferSyntax_BigEndianExplicit || |
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46 target == DicomTransferSyntax_DeflatedLittleEndianExplicit || |
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47 target == DicomTransferSyntax_JPEGProcess14 || |
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48 target == DicomTransferSyntax_JPEGProcess14SV1 || |
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49 target == DicomTransferSyntax_JPEGLSLossless || |
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50 target == DicomTransferSyntax_JPEG2000LosslessOnly || |
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51 target == DicomTransferSyntax_JPEG2000MulticomponentLosslessOnly) |
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52 { |
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53 return TranscodingType_Lossless; |
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54 } |
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55 else if (target == DicomTransferSyntax_JPEGProcess1 || |
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56 target == DicomTransferSyntax_JPEGProcess2_4 || |
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57 target == DicomTransferSyntax_JPEGLSLossy || |
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58 target == DicomTransferSyntax_JPEG2000 || |
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59 target == DicomTransferSyntax_JPEG2000Multicomponent) |
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60 { |
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61 return TranscodingType_Lossy; |
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62 } |
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63 else |
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64 { |
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65 return TranscodingType_Unknown; |
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66 } |
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67 } |
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68 |
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69 |
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70 std::string IDicomTranscoder::GetSopInstanceUid(DcmFileFormat& dicom) |
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71 { |
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72 if (dicom.getDataset() == NULL) |
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73 { |
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74 throw OrthancException(ErrorCode_InternalError); |
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75 } |
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76 |
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77 DcmDataset& dataset = *dicom.getDataset(); |
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78 |
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79 const char* v = NULL; |
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80 |
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81 if (dataset.findAndGetString(DCM_SOPInstanceUID, v).good() && |
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82 v != NULL) |
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83 { |
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84 return std::string(v); |
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85 } |
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86 else |
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87 { |
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88 throw OrthancException(ErrorCode_BadFileFormat, "File without SOP instance UID"); |
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89 } |
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90 } |
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91 |
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92 |
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93 void IDicomTranscoder::CheckTranscoding(IDicomTranscoder::DicomImage& transcoded, |
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94 DicomTransferSyntax sourceSyntax, |
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95 const std::string& sourceSopInstanceUid, |
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96 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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97 bool allowNewSopInstanceUid) |
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98 { |
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99 DcmFileFormat& parsed = transcoded.GetParsed(); |
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100 |
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101 if (parsed.getDataset() == NULL) |
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102 { |
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103 throw OrthancException(ErrorCode_InternalError); |
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104 } |
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105 |
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106 std::string targetSopInstanceUid = GetSopInstanceUid(parsed); |
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107 |
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108 if (parsed.getDataset()->tagExists(DCM_PixelData)) |
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109 { |
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110 if (!allowNewSopInstanceUid && (targetSopInstanceUid != sourceSopInstanceUid)) |
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111 { |
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112 throw OrthancException(ErrorCode_InternalError); |
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113 } |
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114 } |
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115 else |
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116 { |
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117 if (targetSopInstanceUid != sourceSopInstanceUid) |
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118 { |
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119 throw OrthancException(ErrorCode_InternalError, |
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120 "No pixel data: Transcoding must not change the SOP instance UID"); |
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121 } |
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122 } |
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123 |
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124 DicomTransferSyntax targetSyntax; |
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125 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(targetSyntax, parsed)) |
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126 { |
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127 return; // Unknown transfer syntax, cannot do further test |
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128 } |
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129 |
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130 if (allowedSyntaxes.find(sourceSyntax) != allowedSyntaxes.end()) |
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131 { |
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132 // No transcoding should have happened |
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133 if (targetSopInstanceUid != sourceSopInstanceUid) |
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134 { |
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135 throw OrthancException(ErrorCode_InternalError); |
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136 } |
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137 } |
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138 |
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139 if (allowedSyntaxes.find(targetSyntax) == allowedSyntaxes.end()) |
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140 { |
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141 throw OrthancException(ErrorCode_InternalError, "An incorrect output transfer syntax was chosen"); |
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142 } |
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143 |
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144 if (parsed.getDataset()->tagExists(DCM_PixelData)) |
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145 { |
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146 switch (GetTranscodingType(targetSyntax, sourceSyntax)) |
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147 { |
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148 case TranscodingType_Lossy: |
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149 if (targetSopInstanceUid == sourceSopInstanceUid) |
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150 { |
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151 throw OrthancException(ErrorCode_InternalError); |
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152 } |
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153 break; |
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154 |
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155 case TranscodingType_Lossless: |
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156 if (targetSopInstanceUid != sourceSopInstanceUid) |
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157 { |
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158 throw OrthancException(ErrorCode_InternalError); |
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159 } |
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160 break; |
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161 |
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162 default: |
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163 break; |
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164 } |
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165 } |
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166 } |
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168 |
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169 void IDicomTranscoder::DicomImage::Parse() |
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170 { |
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171 if (parsed_.get() != NULL) |
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172 { |
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173 // Already parsed |
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174 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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175 } |
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176 else if (buffer_.get() != NULL) |
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177 { |
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178 if (isExternalBuffer_) |
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179 { |
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180 throw OrthancException(ErrorCode_InternalError); |
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181 } |
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182 else |
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183 { |
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184 parsed_.reset(FromDcmtkBridge::LoadFromMemoryBuffer( |
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185 buffer_->empty() ? NULL : buffer_->c_str(), buffer_->size())); |
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186 |
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187 if (parsed_.get() == NULL) |
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188 { |
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189 throw OrthancException(ErrorCode_BadFileFormat); |
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190 } |
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191 } |
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192 } |
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193 else if (isExternalBuffer_) |
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194 { |
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195 parsed_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(externalBuffer_, externalSize_)); |
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196 |
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197 if (parsed_.get() == NULL) |
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198 { |
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199 throw OrthancException(ErrorCode_BadFileFormat); |
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200 } |
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201 } |
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202 else |
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203 { |
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204 // No buffer is available |
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205 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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206 } |
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207 } |
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208 |
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209 |
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210 void IDicomTranscoder::DicomImage::Serialize() |
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211 { |
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212 if (parsed_.get() == NULL || |
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213 buffer_.get() != NULL || |
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214 isExternalBuffer_) |
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215 { |
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216 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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217 } |
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218 else if (parsed_->getDataset() == NULL) |
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219 { |
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220 throw OrthancException(ErrorCode_InternalError); |
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221 } |
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222 else |
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223 { |
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224 buffer_.reset(new std::string); |
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225 FromDcmtkBridge::SaveToMemoryBuffer(*buffer_, *parsed_->getDataset()); |
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226 } |
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227 } |
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228 |
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229 |
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230 IDicomTranscoder::DicomImage::DicomImage() : |
4200 | 231 isExternalBuffer_(false), |
232 externalBuffer_(NULL), | |
233 externalSize_(0) | |
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234 { |
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235 } |
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236 |
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237 |
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238 void IDicomTranscoder::DicomImage::Clear() |
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239 { |
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240 parsed_.reset(NULL); |
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241 buffer_.reset(NULL); |
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242 isExternalBuffer_ = false; |
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243 } |
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244 |
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245 |
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246 void IDicomTranscoder::DicomImage::AcquireParsed(ParsedDicomFile& parsed) |
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247 { |
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248 AcquireParsed(parsed.ReleaseDcmtkObject()); |
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249 } |
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250 |
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251 |
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252 void IDicomTranscoder::DicomImage::AcquireParsed(DcmFileFormat* parsed) |
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253 { |
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254 if (parsed == NULL) |
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255 { |
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256 throw OrthancException(ErrorCode_NullPointer); |
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257 } |
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258 else if (parsed->getDataset() == NULL) |
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259 { |
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260 throw OrthancException(ErrorCode_InternalError); |
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261 } |
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262 else if (parsed_.get() != NULL) |
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263 { |
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264 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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265 } |
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266 else |
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267 { |
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268 parsed_.reset(parsed); |
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269 } |
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270 } |
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271 |
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272 |
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273 void IDicomTranscoder::DicomImage::AcquireParsed(DicomImage& other) |
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274 { |
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275 AcquireParsed(other.ReleaseParsed()); |
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276 } |
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277 |
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278 |
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279 void IDicomTranscoder::DicomImage::AcquireBuffer(std::string& buffer /* will be swapped */) |
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280 { |
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281 if (buffer_.get() != NULL || |
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282 isExternalBuffer_) |
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283 { |
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284 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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285 } |
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286 else |
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287 { |
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288 buffer_.reset(new std::string); |
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289 buffer_->swap(buffer); |
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290 } |
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291 } |
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292 |
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293 |
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294 void IDicomTranscoder::DicomImage::AcquireBuffer(DicomImage& other) |
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295 { |
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296 if (buffer_.get() != NULL || |
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297 isExternalBuffer_) |
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298 { |
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299 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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300 } |
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301 else if (other.isExternalBuffer_) |
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302 { |
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303 assert(other.buffer_.get() == NULL); |
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304 isExternalBuffer_ = true; |
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305 externalBuffer_ = other.externalBuffer_; |
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306 externalSize_ = other.externalSize_; |
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307 } |
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308 else if (other.buffer_.get() != NULL) |
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309 { |
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310 buffer_.reset(other.buffer_.release()); |
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311 } |
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312 else |
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313 { |
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314 buffer_.reset(NULL); |
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315 } |
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316 } |
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317 |
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318 |
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319 void IDicomTranscoder::DicomImage::SetExternalBuffer(const void* buffer, |
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320 size_t size) |
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321 { |
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322 if (buffer_.get() != NULL || |
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323 isExternalBuffer_) |
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324 { |
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325 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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326 } |
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327 else |
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328 { |
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329 isExternalBuffer_ = true; |
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330 externalBuffer_ = buffer; |
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331 externalSize_ = size; |
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332 } |
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333 } |
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334 |
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335 |
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336 void IDicomTranscoder::DicomImage::SetExternalBuffer(const std::string& buffer) |
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337 { |
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338 SetExternalBuffer(buffer.empty() ? NULL : buffer.c_str(), buffer.size()); |
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339 } |
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340 |
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341 |
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342 DcmFileFormat& IDicomTranscoder::DicomImage::GetParsed() |
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343 { |
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344 if (parsed_.get() != NULL) |
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345 { |
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346 return *parsed_; |
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347 } |
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348 else if (buffer_.get() != NULL || |
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349 isExternalBuffer_) |
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350 { |
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351 Parse(); |
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352 return *parsed_; |
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353 } |
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354 else |
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355 { |
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356 throw OrthancException( |
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357 ErrorCode_BadSequenceOfCalls, |
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358 "AcquireParsed(), AcquireBuffer() or SetExternalBuffer() should have been called"); |
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359 } |
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360 } |
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361 |
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362 |
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363 DcmFileFormat* IDicomTranscoder::DicomImage::ReleaseParsed() |
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364 { |
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365 if (parsed_.get() != NULL) |
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366 { |
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367 buffer_.reset(NULL); |
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368 return parsed_.release(); |
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369 } |
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370 else if (buffer_.get() != NULL || |
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371 isExternalBuffer_) |
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372 { |
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373 Parse(); |
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374 buffer_.reset(NULL); |
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375 return parsed_.release(); |
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376 } |
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377 else |
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378 { |
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379 throw OrthancException( |
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380 ErrorCode_BadSequenceOfCalls, |
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381 "AcquireParsed(), AcquireBuffer() or SetExternalBuffer() should have been called"); |
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382 } |
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383 } |
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384 |
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385 |
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386 ParsedDicomFile* IDicomTranscoder::DicomImage::ReleaseAsParsedDicomFile() |
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387 { |
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388 return ParsedDicomFile::AcquireDcmtkObject(ReleaseParsed()); |
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389 } |
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390 |
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391 |
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392 const void* IDicomTranscoder::DicomImage::GetBufferData() |
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393 { |
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394 if (isExternalBuffer_) |
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395 { |
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396 assert(buffer_.get() == NULL); |
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397 return externalBuffer_; |
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398 } |
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399 else |
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400 { |
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401 if (buffer_.get() == NULL) |
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402 { |
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403 Serialize(); |
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404 } |
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405 |
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406 assert(buffer_.get() != NULL); |
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407 return buffer_->empty() ? NULL : buffer_->c_str(); |
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408 } |
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409 } |
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410 |
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411 |
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412 size_t IDicomTranscoder::DicomImage::GetBufferSize() |
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413 { |
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414 if (isExternalBuffer_) |
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415 { |
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416 assert(buffer_.get() == NULL); |
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417 return externalSize_; |
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418 } |
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419 else |
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420 { |
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421 if (buffer_.get() == NULL) |
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422 { |
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423 Serialize(); |
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424 } |
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425 |
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426 assert(buffer_.get() != NULL); |
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427 return buffer_->size(); |
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428 } |
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429 } |
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430 } |