Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancWebDav.cpp @ 4796:94616af363ec filter-store-instance
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
| author | Alain Mazy <am@osimis.io> |
|---|---|
| date | Fri, 01 Oct 2021 18:36:45 +0200 |
| parents | 569d9ef165b1 |
| children | 70d2a97ca8cb 7053502fbf97 |
| rev | line source |
|---|---|
| 4240 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
|
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 4240 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #include "OrthancWebDav.h" | |
| 35 | |
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36 #include "../../OrthancFramework/Sources/Compression/ZipReader.h" |
| 4240 | 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
| 38 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
| 39 #include "../../OrthancFramework/Sources/HttpServer/WebDavStorage.h" | |
| 4304 | 40 #include "../../OrthancFramework/Sources/Logging.h" |
| 4240 | 41 #include "Search/DatabaseLookup.h" |
| 42 #include "ServerContext.h" | |
| 43 | |
| 44 #include <boost/regex.hpp> | |
| 45 #include <boost/algorithm/string/predicate.hpp> | |
| 46 | |
| 47 | |
| 48 static const char* const BY_PATIENTS = "by-patients"; | |
| 49 static const char* const BY_STUDIES = "by-studies"; | |
| 4241 | 50 static const char* const BY_DATES = "by-dates"; |
| 4240 | 51 static const char* const BY_UIDS = "by-uids"; |
| 52 static const char* const UPLOADS = "uploads"; | |
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53 static const char* const STUDY_INFO = "study.json"; |
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54 static const char* const SERIES_INFO = "series.json"; |
| 4240 | 55 |
| 56 | |
| 57 namespace Orthanc | |
| 58 { | |
| 59 static boost::posix_time::ptime GetNow() | |
| 60 { | |
| 61 return boost::posix_time::second_clock::universal_time(); | |
| 62 } | |
| 63 | |
| 64 | |
| 65 static void LookupTime(boost::posix_time::ptime& target, | |
| 66 ServerContext& context, | |
| 67 const std::string& publicId, | |
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68 ResourceType level, |
| 4240 | 69 MetadataType metadata) |
| 70 { | |
| 71 std::string value; | |
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72 int64_t revision; // Ignored |
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73 if (context.GetIndex().LookupMetadata(value, revision, publicId, level, metadata)) |
| 4240 | 74 { |
| 75 try | |
| 76 { | |
| 77 target = boost::posix_time::from_iso_string(value); | |
| 78 return; | |
| 79 } | |
| 80 catch (std::exception& e) | |
| 81 { | |
| 82 } | |
| 83 } | |
| 84 | |
| 85 target = GetNow(); | |
| 86 } | |
| 87 | |
| 88 | |
| 89 class OrthancWebDav::DicomIdentifiersVisitor : public ServerContext::ILookupVisitor | |
| 90 { | |
| 91 private: | |
| 92 ServerContext& context_; | |
| 93 bool isComplete_; | |
| 94 Collection& target_; | |
| 95 ResourceType level_; | |
| 96 | |
| 97 public: | |
| 98 DicomIdentifiersVisitor(ServerContext& context, | |
| 99 Collection& target, | |
| 100 ResourceType level) : | |
| 101 context_(context), | |
| 102 isComplete_(false), | |
| 103 target_(target), | |
| 104 level_(level) | |
| 105 { | |
| 106 } | |
| 107 | |
| 108 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 109 { | |
| 110 return false; // (*) | |
| 111 } | |
| 112 | |
| 113 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 114 { | |
| 115 isComplete_ = true; // TODO | |
| 116 } | |
| 117 | |
| 118 virtual void Visit(const std::string& publicId, | |
| 119 const std::string& instanceId /* unused */, | |
| 120 const DicomMap& mainDicomTags, | |
| 121 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 122 { | |
| 123 DicomTag tag(0, 0); | |
| 124 MetadataType timeMetadata; | |
| 125 | |
| 126 switch (level_) | |
| 127 { | |
| 128 case ResourceType_Study: | |
| 129 tag = DICOM_TAG_STUDY_INSTANCE_UID; | |
| 130 timeMetadata = MetadataType_LastUpdate; | |
| 131 break; | |
| 132 | |
| 133 case ResourceType_Series: | |
| 134 tag = DICOM_TAG_SERIES_INSTANCE_UID; | |
| 135 timeMetadata = MetadataType_LastUpdate; | |
| 136 break; | |
| 137 | |
| 138 case ResourceType_Instance: | |
| 139 tag = DICOM_TAG_SOP_INSTANCE_UID; | |
| 140 timeMetadata = MetadataType_Instance_ReceptionDate; | |
| 141 break; | |
| 142 | |
| 143 default: | |
| 144 throw OrthancException(ErrorCode_InternalError); | |
| 145 } | |
| 146 | |
| 147 std::string s; | |
| 148 if (mainDicomTags.LookupStringValue(s, tag, false) && | |
| 149 !s.empty()) | |
| 150 { | |
| 151 std::unique_ptr<Resource> resource; | |
| 152 | |
| 153 if (level_ == ResourceType_Instance) | |
| 154 { | |
| 155 FileInfo info; | |
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156 int64_t revision; // Ignored |
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157 if (context_.GetIndex().LookupAttachment(info, revision, publicId, FileContentType_Dicom)) |
| 4240 | 158 { |
| 159 std::unique_ptr<File> f(new File(s + ".dcm")); | |
| 160 f->SetMimeType(MimeType_Dicom); | |
| 161 f->SetContentLength(info.GetUncompressedSize()); | |
| 162 resource.reset(f.release()); | |
| 163 } | |
| 164 } | |
| 165 else | |
| 166 { | |
| 167 resource.reset(new Folder(s)); | |
| 168 } | |
| 169 | |
| 170 if (resource.get() != NULL) | |
| 171 { | |
| 172 boost::posix_time::ptime t; | |
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173 LookupTime(t, context_, publicId, level_, timeMetadata); |
| 4240 | 174 resource->SetCreationTime(t); |
| 175 target_.AddResource(resource.release()); | |
| 176 } | |
| 177 } | |
| 178 } | |
| 179 }; | |
| 180 | |
| 181 | |
| 182 class OrthancWebDav::DicomFileVisitor : public ServerContext::ILookupVisitor | |
| 183 { | |
| 184 private: | |
| 185 ServerContext& context_; | |
| 186 bool success_; | |
| 187 std::string& target_; | |
| 188 boost::posix_time::ptime& time_; | |
| 189 | |
| 190 public: | |
| 191 DicomFileVisitor(ServerContext& context, | |
| 192 std::string& target, | |
| 193 boost::posix_time::ptime& time) : | |
| 194 context_(context), | |
| 195 success_(false), | |
| 196 target_(target), | |
| 197 time_(time) | |
| 198 { | |
| 199 } | |
| 200 | |
| 201 bool IsSuccess() const | |
| 202 { | |
| 203 return success_; | |
| 204 } | |
| 205 | |
| 206 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 207 { | |
| 208 return false; // (*) | |
| 209 } | |
| 210 | |
| 211 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 212 { | |
| 213 } | |
| 214 | |
| 215 virtual void Visit(const std::string& publicId, | |
| 216 const std::string& instanceId /* unused */, | |
| 217 const DicomMap& mainDicomTags, | |
| 218 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 219 { | |
| 220 if (success_) | |
| 221 { | |
| 222 success_ = false; // Two matches => Error | |
| 223 } | |
| 224 else | |
| 225 { | |
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226 LookupTime(time_, context_, publicId, ResourceType_Instance, MetadataType_Instance_ReceptionDate); |
| 4240 | 227 context_.ReadDicom(target_, publicId); |
| 228 success_ = true; | |
| 229 } | |
| 230 } | |
| 231 }; | |
| 232 | |
| 233 | |
| 234 class OrthancWebDav::OrthancJsonVisitor : public ServerContext::ILookupVisitor | |
| 235 { | |
| 236 private: | |
| 237 ServerContext& context_; | |
| 238 bool success_; | |
| 239 std::string& target_; | |
| 240 ResourceType level_; | |
| 241 | |
| 242 public: | |
| 243 OrthancJsonVisitor(ServerContext& context, | |
| 244 std::string& target, | |
| 245 ResourceType level) : | |
| 246 context_(context), | |
| 247 success_(false), | |
| 248 target_(target), | |
| 249 level_(level) | |
| 250 { | |
| 251 } | |
| 252 | |
| 253 bool IsSuccess() const | |
| 254 { | |
| 255 return success_; | |
| 256 } | |
| 257 | |
| 258 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 259 { | |
| 260 return false; // (*) | |
| 261 } | |
| 262 | |
| 263 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 264 { | |
| 265 } | |
| 266 | |
| 267 virtual void Visit(const std::string& publicId, | |
| 268 const std::string& instanceId /* unused */, | |
| 269 const DicomMap& mainDicomTags, | |
| 270 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 271 { | |
| 4554 | 272 Json::Value resource; |
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273 if (context_.GetIndex().ExpandResource(resource, publicId, level_, DicomToJsonFormat_Human)) |
| 4240 | 274 { |
| 275 if (success_) | |
| 276 { | |
| 277 success_ = false; // Two matches => Error | |
| 278 } | |
| 279 else | |
| 280 { | |
| 4554 | 281 target_ = resource.toStyledString(); |
| 4240 | 282 |
| 283 // Replace UNIX newlines with DOS newlines | |
| 284 boost::replace_all(target_, "\n", "\r\n"); | |
| 285 | |
| 286 success_ = true; | |
| 287 } | |
| 288 } | |
| 289 } | |
| 290 }; | |
| 291 | |
| 292 | |
| 293 class OrthancWebDav::ResourcesIndex : public boost::noncopyable | |
| 294 { | |
| 295 public: | |
| 296 typedef std::map<std::string, std::string> Map; | |
| 297 | |
| 298 private: | |
| 299 ServerContext& context_; | |
| 300 ResourceType level_; | |
| 301 std::string template_; | |
| 302 Map pathToResource_; | |
| 303 Map resourceToPath_; | |
| 304 | |
| 305 void CheckInvariants() | |
| 306 { | |
| 307 #ifndef NDEBUG | |
| 308 assert(pathToResource_.size() == resourceToPath_.size()); | |
| 309 | |
| 310 for (Map::const_iterator it = pathToResource_.begin(); it != pathToResource_.end(); ++it) | |
| 311 { | |
| 312 assert(resourceToPath_[it->second] == it->first); | |
| 313 } | |
| 314 | |
| 315 for (Map::const_iterator it = resourceToPath_.begin(); it != resourceToPath_.end(); ++it) | |
| 316 { | |
| 317 assert(pathToResource_[it->second] == it->first); | |
| 318 } | |
| 319 #endif | |
| 320 } | |
| 321 | |
| 322 void AddTags(DicomMap& target, | |
| 323 const std::string& resourceId, | |
| 324 ResourceType tagsFromLevel) | |
| 325 { | |
| 326 DicomMap tags; | |
| 327 if (context_.GetIndex().GetMainDicomTags(tags, resourceId, level_, tagsFromLevel)) | |
| 328 { | |
| 329 target.Merge(tags); | |
| 330 } | |
| 331 } | |
| 332 | |
| 333 void Register(const std::string& resourceId) | |
| 334 { | |
| 335 // Don't register twice the same resource | |
| 336 if (resourceToPath_.find(resourceId) == resourceToPath_.end()) | |
| 337 { | |
| 338 std::string name = template_; | |
| 339 | |
| 340 DicomMap tags; | |
| 341 | |
| 342 AddTags(tags, resourceId, level_); | |
| 343 | |
| 344 if (level_ == ResourceType_Study) | |
| 345 { | |
| 346 AddTags(tags, resourceId, ResourceType_Patient); | |
| 347 } | |
| 348 | |
| 349 DicomArray arr(tags); | |
| 350 for (size_t i = 0; i < arr.GetSize(); i++) | |
| 351 { | |
| 352 const DicomElement& element = arr.GetElement(i); | |
| 353 if (!element.GetValue().IsNull() && | |
| 354 !element.GetValue().IsBinary()) | |
| 355 { | |
| 356 const std::string tag = FromDcmtkBridge::GetTagName(element.GetTag(), ""); | |
| 357 boost::replace_all(name, "{{" + tag + "}}", element.GetValue().GetContent()); | |
| 358 } | |
| 359 } | |
| 360 | |
| 361 // Blank the tags that were not matched | |
| 362 static const boost::regex REGEX_BLANK_TAGS("{{.*?}}"); // non-greedy match | |
| 363 name = boost::regex_replace(name, REGEX_BLANK_TAGS, ""); | |
| 364 | |
| 365 // UTF-8 characters cannot be used on Windows XP | |
| 366 name = Toolbox::ConvertToAscii(name); | |
| 367 boost::replace_all(name, "/", ""); | |
| 368 boost::replace_all(name, "\\", ""); | |
| 369 | |
| 370 // Trim sequences of spaces as one single space | |
| 371 static const boost::regex REGEX_TRIM_SPACES("{{.*?}}"); | |
| 372 name = boost::regex_replace(name, REGEX_TRIM_SPACES, " "); | |
| 373 name = Toolbox::StripSpaces(name); | |
| 374 | |
| 375 size_t count = 0; | |
| 376 for (;;) | |
| 377 { | |
| 378 std::string path = name; | |
| 379 if (count > 0) | |
| 380 { | |
| 381 path += " (" + boost::lexical_cast<std::string>(count) + ")"; | |
| 382 } | |
| 383 | |
| 384 if (pathToResource_.find(path) == pathToResource_.end()) | |
| 385 { | |
| 386 pathToResource_[path] = resourceId; | |
| 387 resourceToPath_[resourceId] = path; | |
| 388 return; | |
| 389 } | |
| 390 | |
| 391 count++; | |
| 392 } | |
| 393 | |
| 394 throw OrthancException(ErrorCode_InternalError); | |
| 395 } | |
| 396 } | |
| 397 | |
| 398 public: | |
| 399 ResourcesIndex(ServerContext& context, | |
| 400 ResourceType level, | |
| 401 const std::string& templateString) : | |
| 402 context_(context), | |
| 403 level_(level), | |
| 404 template_(templateString) | |
| 405 { | |
| 406 } | |
| 407 | |
| 408 ResourceType GetLevel() const | |
| 409 { | |
| 410 return level_; | |
| 411 } | |
| 412 | |
| 413 void Refresh(std::set<std::string>& removedPaths /* out */, | |
| 414 const std::set<std::string>& resources) | |
| 415 { | |
| 416 CheckInvariants(); | |
| 417 | |
| 418 // Detect the resources that have been removed since last refresh | |
| 419 removedPaths.clear(); | |
| 420 std::set<std::string> removedResources; | |
| 421 | |
| 422 for (Map::iterator it = resourceToPath_.begin(); it != resourceToPath_.end(); ++it) | |
| 423 { | |
| 424 if (resources.find(it->first) == resources.end()) | |
| 425 { | |
| 426 const std::string& path = it->second; | |
| 427 | |
| 428 assert(pathToResource_.find(path) != pathToResource_.end()); | |
| 429 pathToResource_.erase(path); | |
| 430 removedPaths.insert(path); | |
| 431 | |
| 432 removedResources.insert(it->first); // Delay the removal to avoid disturbing the iterator | |
| 433 } | |
| 434 } | |
| 435 | |
| 436 // Remove the missing resources | |
| 437 for (std::set<std::string>::const_iterator it = removedResources.begin(); it != removedResources.end(); ++it) | |
| 438 { | |
| 439 assert(resourceToPath_.find(*it) != resourceToPath_.end()); | |
| 440 resourceToPath_.erase(*it); | |
| 441 } | |
| 442 | |
| 443 CheckInvariants(); | |
| 444 | |
| 445 for (std::set<std::string>::const_iterator it = resources.begin(); it != resources.end(); ++it) | |
| 446 { | |
| 447 Register(*it); | |
| 448 } | |
| 449 | |
| 450 CheckInvariants(); | |
| 451 } | |
| 452 | |
| 453 const Map& GetPathToResource() const | |
| 454 { | |
| 455 return pathToResource_; | |
| 456 } | |
| 457 }; | |
| 458 | |
| 459 | |
| 460 class OrthancWebDav::InstancesOfSeries : public INode | |
| 461 { | |
| 462 private: | |
| 463 ServerContext& context_; | |
| 464 std::string parentSeries_; | |
| 465 | |
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466 static bool LookupInstanceId(std::string& instanceId, |
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467 const UriComponents& path) |
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468 { |
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469 if (path.size() == 1 && |
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470 boost::ends_with(path[0], ".dcm")) |
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471 { |
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472 instanceId = path[0].substr(0, path[0].size() - 4); |
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473 return true; |
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474 } |
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475 else |
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476 { |
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477 return false; |
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478 } |
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479 } |
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480 |
| 4240 | 481 public: |
| 482 InstancesOfSeries(ServerContext& context, | |
| 483 const std::string& parentSeries) : | |
| 484 context_(context), | |
| 485 parentSeries_(parentSeries) | |
| 486 { | |
| 487 } | |
| 488 | |
| 489 virtual bool ListCollection(IWebDavBucket::Collection& target, | |
| 490 const UriComponents& path) ORTHANC_OVERRIDE | |
| 491 { | |
| 492 if (path.empty()) | |
| 493 { | |
| 494 std::list<std::string> resources; | |
| 495 try | |
| 496 { | |
| 497 context_.GetIndex().GetChildren(resources, parentSeries_); | |
| 498 } | |
| 499 catch (OrthancException&) | |
| 500 { | |
| 501 // Unknown (or deleted) parent series | |
| 502 return false; | |
| 503 } | |
| 504 | |
| 505 for (std::list<std::string>::const_iterator | |
| 506 it = resources.begin(); it != resources.end(); ++it) | |
| 507 { | |
| 508 boost::posix_time::ptime time; | |
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509 LookupTime(time, context_, *it, ResourceType_Instance, MetadataType_Instance_ReceptionDate); |
| 4240 | 510 |
| 511 FileInfo info; | |
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512 int64_t revision; // Ignored |
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513 if (context_.GetIndex().LookupAttachment(info, revision, *it, FileContentType_Dicom)) |
| 4240 | 514 { |
| 515 std::unique_ptr<File> resource(new File(*it + ".dcm")); | |
| 516 resource->SetMimeType(MimeType_Dicom); | |
| 517 resource->SetContentLength(info.GetUncompressedSize()); | |
| 518 resource->SetCreationTime(time); | |
| 519 target.AddResource(resource.release()); | |
| 520 } | |
| 521 } | |
| 522 | |
| 523 return true; | |
| 524 } | |
| 525 else | |
| 526 { | |
| 527 return false; | |
| 528 } | |
| 529 } | |
| 530 | |
| 531 virtual bool GetFileContent(MimeType& mime, | |
| 532 std::string& content, | |
| 533 boost::posix_time::ptime& time, | |
| 534 const UriComponents& path) ORTHANC_OVERRIDE | |
| 535 { | |
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536 std::string instanceId; |
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537 if (LookupInstanceId(instanceId, path)) |
| 4240 | 538 { |
| 539 try | |
| 540 { | |
| 541 mime = MimeType_Dicom; | |
| 542 context_.ReadDicom(content, instanceId); | |
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543 LookupTime(time, context_, instanceId, ResourceType_Instance, MetadataType_Instance_ReceptionDate); |
| 4240 | 544 return true; |
| 545 } | |
| 546 catch (OrthancException&) | |
| 547 { | |
| 548 // File was removed | |
| 549 return false; | |
| 550 } | |
| 551 } | |
| 552 else | |
| 553 { | |
| 554 return false; | |
| 555 } | |
| 556 } | |
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557 |
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558 virtual bool DeleteItem(const UriComponents& path) ORTHANC_OVERRIDE |
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559 { |
| 4252 | 560 if (path.empty()) |
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561 { |
| 4252 | 562 // Delete all |
| 563 std::list<std::string> resources; | |
| 564 try | |
| 565 { | |
| 566 context_.GetIndex().GetChildren(resources, parentSeries_); | |
| 567 } | |
| 568 catch (OrthancException&) | |
| 569 { | |
| 570 // Unknown (or deleted) parent series | |
| 571 return true; | |
| 572 } | |
| 573 | |
| 574 for (std::list<std::string>::const_iterator it = resources.begin(); | |
| 575 it != resources.end(); ++it) | |
| 576 { | |
| 577 Json::Value info; | |
| 578 context_.DeleteResource(info, *it, ResourceType_Instance); | |
| 579 } | |
| 580 | |
| 581 return true; | |
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582 } |
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583 else |
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584 { |
| 4252 | 585 std::string instanceId; |
| 586 if (LookupInstanceId(instanceId, path)) | |
| 587 { | |
| 588 Json::Value info; | |
| 589 return context_.DeleteResource(info, instanceId, ResourceType_Instance); | |
| 590 } | |
| 591 else | |
| 592 { | |
| 593 return false; | |
| 594 } | |
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595 } |
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596 } |
| 4240 | 597 }; |
| 598 | |
| 599 | |
| 600 | |
| 601 /** | |
| 602 * The "InternalNode" class corresponds to a non-leaf node in the | |
| 603 * WebDAV tree, that only contains subfolders (no file). | |
| 604 * | |
| 605 * TODO: Implement a LRU index to dynamically remove the oldest | |
| 606 * children on high RAM usage. | |
| 607 **/ | |
| 608 class OrthancWebDav::InternalNode : public INode | |
| 609 { | |
| 610 private: | |
| 611 typedef std::map<std::string, INode*> Children; | |
| 612 | |
| 613 Children children_; | |
| 614 | |
| 615 INode* GetChild(const std::string& path) // Don't delete the result pointer! | |
| 616 { | |
| 617 Children::const_iterator child = children_.find(path); | |
| 618 if (child == children_.end()) | |
| 619 { | |
| 4253 | 620 INode* node = CreateSubfolder(path); |
| 4240 | 621 |
| 4253 | 622 if (node == NULL) |
| 4240 | 623 { |
| 624 return NULL; | |
| 625 } | |
| 626 else | |
| 627 { | |
| 4253 | 628 children_[path] = node; |
| 629 return node; | |
| 4240 | 630 } |
| 631 } | |
| 632 else | |
| 633 { | |
| 634 assert(child->second != NULL); | |
| 635 return child->second; | |
| 636 } | |
| 637 } | |
| 638 | |
| 639 protected: | |
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640 void InvalidateSubfolder(const std::string& path) |
| 4240 | 641 { |
| 642 Children::iterator child = children_.find(path); | |
| 643 if (child != children_.end()) | |
| 644 { | |
| 645 assert(child->second != NULL); | |
| 646 delete child->second; | |
| 647 children_.erase(child); | |
| 648 } | |
| 649 } | |
| 650 | |
| 651 virtual void Refresh() = 0; | |
| 652 | |
| 653 virtual bool ListSubfolders(IWebDavBucket::Collection& target) = 0; | |
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654 |
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655 virtual INode* CreateSubfolder(const std::string& path) = 0; |
| 4240 | 656 |
| 657 public: | |
| 658 virtual ~InternalNode() | |
| 659 { | |
| 660 for (Children::iterator it = children_.begin(); it != children_.end(); ++it) | |
| 661 { | |
| 662 assert(it->second != NULL); | |
| 663 delete it->second; | |
| 664 } | |
| 665 } | |
| 666 | |
| 667 virtual bool ListCollection(IWebDavBucket::Collection& target, | |
| 668 const UriComponents& path) | |
| 669 ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 670 { | |
| 671 Refresh(); | |
| 672 | |
| 673 if (path.empty()) | |
| 674 { | |
| 675 return ListSubfolders(target); | |
| 676 } | |
| 677 else | |
| 678 { | |
| 679 // Recursivity | |
| 680 INode* child = GetChild(path[0]); | |
| 681 if (child == NULL) | |
| 682 { | |
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683 // Must be "true" to allow DELETE on folders that are |
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684 // automatically removed through recursive deletion |
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685 return true; |
| 4240 | 686 } |
| 687 else | |
| 688 { | |
| 689 UriComponents subpath(path.begin() + 1, path.end()); | |
| 690 return child->ListCollection(target, subpath); | |
| 691 } | |
| 692 } | |
| 693 } | |
| 694 | |
| 695 virtual bool GetFileContent(MimeType& mime, | |
| 696 std::string& content, | |
| 697 boost::posix_time::ptime& time, | |
| 698 const UriComponents& path) | |
| 699 ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 700 { | |
| 701 if (path.empty()) | |
| 702 { | |
| 703 return false; // An internal node doesn't correspond to a file | |
| 704 } | |
| 705 else | |
| 706 { | |
| 707 // Recursivity | |
| 708 Refresh(); | |
| 709 | |
| 710 INode* child = GetChild(path[0]); | |
| 711 if (child == NULL) | |
| 712 { | |
| 713 return false; | |
| 714 } | |
| 715 else | |
| 716 { | |
| 717 UriComponents subpath(path.begin() + 1, path.end()); | |
| 718 return child->GetFileContent(mime, content, time, subpath); | |
| 719 } | |
| 720 } | |
| 721 } | |
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722 |
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723 |
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724 virtual bool DeleteItem(const UriComponents& path) ORTHANC_OVERRIDE ORTHANC_FINAL |
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725 { |
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726 Refresh(); |
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727 |
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728 if (path.empty()) |
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729 { |
| 4252 | 730 IWebDavBucket::Collection collection; |
| 731 if (ListSubfolders(collection)) | |
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732 { |
| 4252 | 733 std::set<std::string> content; |
| 734 collection.ListDisplayNames(content); | |
| 735 | |
| 736 for (std::set<std::string>::const_iterator | |
| 737 it = content.begin(); it != content.end(); ++it) | |
| 738 { | |
| 739 INode* node = GetChild(*it); | |
| 740 if (node) | |
| 741 { | |
| 742 node->DeleteItem(path); | |
| 743 } | |
| 744 } | |
| 745 | |
| 746 return true; | |
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747 } |
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748 else |
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749 { |
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750 return false; |
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751 } |
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752 } |
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753 else |
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754 { |
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755 INode* child = GetChild(path[0]); |
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756 if (child == NULL) |
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757 { |
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758 return true; |
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759 } |
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760 else |
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761 { |
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762 // Recursivity |
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763 UriComponents subpath(path.begin() + 1, path.end()); |
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764 return child->DeleteItem(subpath); |
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765 } |
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766 } |
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767 } |
| 4240 | 768 }; |
| 769 | |
| 770 | |
| 771 class OrthancWebDav::ListOfResources : public InternalNode | |
| 772 { | |
| 773 private: | |
| 774 ServerContext& context_; | |
| 775 const Templates& templates_; | |
| 776 std::unique_ptr<ResourcesIndex> index_; | |
| 777 MetadataType timeMetadata_; | |
| 778 | |
| 779 protected: | |
| 780 virtual void Refresh() ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 781 { | |
| 782 std::list<std::string> resources; | |
| 783 GetCurrentResources(resources); | |
| 784 | |
| 785 std::set<std::string> removedPaths; | |
| 786 index_->Refresh(removedPaths, std::set<std::string>(resources.begin(), resources.end())); | |
| 787 | |
| 788 // Remove the children whose associated resource doesn't exist anymore | |
| 789 for (std::set<std::string>::const_iterator | |
| 790 it = removedPaths.begin(); it != removedPaths.end(); ++it) | |
| 791 { | |
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792 InvalidateSubfolder(*it); |
| 4240 | 793 } |
| 794 } | |
| 795 | |
| 796 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 797 { | |
| 798 if (index_->GetLevel() == ResourceType_Instance) | |
| 799 { | |
| 800 // Not a collection, no subfolders | |
| 801 return false; | |
| 802 } | |
| 803 else | |
| 804 { | |
| 805 const ResourcesIndex::Map& paths = index_->GetPathToResource(); | |
| 806 | |
| 807 for (ResourcesIndex::Map::const_iterator it = paths.begin(); it != paths.end(); ++it) | |
| 808 { | |
| 809 boost::posix_time::ptime time; | |
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810 LookupTime(time, context_, it->second, index_->GetLevel(), timeMetadata_); |
| 4240 | 811 |
| 812 std::unique_ptr<IWebDavBucket::Resource> resource(new IWebDavBucket::Folder(it->first)); | |
| 813 resource->SetCreationTime(time); | |
| 814 target.AddResource(resource.release()); | |
| 815 } | |
| 816 | |
| 817 return true; | |
| 818 } | |
| 819 } | |
| 820 | |
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821 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE ORTHANC_FINAL |
| 4240 | 822 { |
| 823 ResourcesIndex::Map::const_iterator resource = index_->GetPathToResource().find(path); | |
| 824 if (resource == index_->GetPathToResource().end()) | |
| 825 { | |
| 826 return NULL; | |
| 827 } | |
| 828 else | |
| 829 { | |
| 830 return CreateResourceNode(resource->second); | |
| 831 } | |
| 832 } | |
| 833 | |
| 834 ServerContext& GetContext() const | |
| 835 { | |
| 836 return context_; | |
| 837 } | |
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838 |
| 4240 | 839 virtual void GetCurrentResources(std::list<std::string>& resources) = 0; |
| 840 | |
| 841 virtual INode* CreateResourceNode(const std::string& resource) = 0; | |
| 842 | |
| 843 public: | |
| 844 ListOfResources(ServerContext& context, | |
| 845 ResourceType level, | |
| 846 const Templates& templates) : | |
| 847 context_(context), | |
| 848 templates_(templates) | |
| 849 { | |
| 850 Templates::const_iterator t = templates.find(level); | |
| 851 if (t == templates.end()) | |
| 852 { | |
| 853 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 854 } | |
| 855 | |
| 856 index_.reset(new ResourcesIndex(context, level, t->second)); | |
| 857 | |
| 858 if (level == ResourceType_Instance) | |
| 859 { | |
| 860 timeMetadata_ = MetadataType_Instance_ReceptionDate; | |
| 861 } | |
| 862 else | |
| 863 { | |
| 864 timeMetadata_ = MetadataType_LastUpdate; | |
| 865 } | |
| 866 } | |
| 867 | |
| 868 ResourceType GetLevel() const | |
| 869 { | |
| 870 return index_->GetLevel(); | |
| 871 } | |
| 872 | |
| 873 const Templates& GetTemplates() const | |
| 874 { | |
| 875 return templates_; | |
| 876 } | |
| 877 }; | |
| 878 | |
| 879 | |
| 880 | |
| 881 class OrthancWebDav::SingleDicomResource : public ListOfResources | |
| 882 { | |
| 883 private: | |
| 884 std::string parentId_; | |
| 885 | |
| 886 protected: | |
| 887 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 888 { | |
| 889 try | |
| 890 { | |
| 891 GetContext().GetIndex().GetChildren(resources, parentId_); | |
| 892 } | |
| 893 catch (OrthancException&) | |
| 894 { | |
| 895 // Unknown parent resource | |
| 896 resources.clear(); | |
| 897 } | |
| 898 } | |
| 899 | |
| 900 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 901 { | |
| 902 if (GetLevel() == ResourceType_Instance) | |
| 903 { | |
| 904 return NULL; | |
| 905 } | |
| 906 else if (GetLevel() == ResourceType_Series) | |
| 907 { | |
| 908 return new InstancesOfSeries(GetContext(), resource); | |
| 909 } | |
| 910 else | |
| 911 { | |
| 912 ResourceType l = GetChildResourceType(GetLevel()); | |
| 913 return new SingleDicomResource(GetContext(), l, resource, GetTemplates()); | |
| 914 } | |
| 915 } | |
| 916 | |
| 917 public: | |
| 918 SingleDicomResource(ServerContext& context, | |
| 919 ResourceType level, | |
| 920 const std::string& parentId, | |
| 921 const Templates& templates) : | |
| 922 ListOfResources(context, level, templates), | |
| 923 parentId_(parentId) | |
| 924 { | |
| 925 } | |
| 926 }; | |
| 927 | |
| 928 | |
| 929 class OrthancWebDav::RootNode : public ListOfResources | |
| 930 { | |
| 931 protected: | |
| 932 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 933 { | |
| 934 GetContext().GetIndex().GetAllUuids(resources, GetLevel()); | |
| 935 } | |
| 936 | |
| 937 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 938 { | |
| 939 if (GetLevel() == ResourceType_Series) | |
| 940 { | |
| 941 return new InstancesOfSeries(GetContext(), resource); | |
| 942 } | |
| 943 else | |
| 944 { | |
| 945 ResourceType l = GetChildResourceType(GetLevel()); | |
| 946 return new SingleDicomResource(GetContext(), l, resource, GetTemplates()); | |
| 947 } | |
| 948 } | |
| 949 | |
| 950 public: | |
| 951 RootNode(ServerContext& context, | |
| 952 ResourceType level, | |
| 953 const Templates& templates) : | |
| 954 ListOfResources(context, level, templates) | |
| 955 { | |
| 956 } | |
| 957 }; | |
| 958 | |
| 959 | |
| 960 class OrthancWebDav::ListOfStudiesByDate : public ListOfResources | |
| 961 { | |
| 962 private: | |
| 963 std::string year_; | |
| 964 std::string month_; | |
| 965 | |
| 966 class Visitor : public ServerContext::ILookupVisitor | |
| 967 { | |
| 968 private: | |
| 969 std::list<std::string>& resources_; | |
| 970 | |
| 971 public: | |
| 4253 | 972 explicit Visitor(std::list<std::string>& resources) : |
| 4240 | 973 resources_(resources) |
| 974 { | |
| 975 } | |
| 976 | |
| 977 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 978 { | |
| 979 return false; // (*) | |
| 980 } | |
| 981 | |
| 982 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 983 { | |
| 984 } | |
| 985 | |
| 986 virtual void Visit(const std::string& publicId, | |
| 987 const std::string& instanceId /* unused */, | |
| 988 const DicomMap& mainDicomTags, | |
| 989 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 990 { | |
| 991 resources_.push_back(publicId); | |
| 992 } | |
| 993 }; | |
| 994 | |
| 995 protected: | |
| 996 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 997 { | |
| 998 DatabaseLookup query; | |
| 999 query.AddRestConstraint(DICOM_TAG_STUDY_DATE, year_ + month_ + "01-" + year_ + month_ + "31", | |
| 1000 true /* case sensitive */, true /* mandatory tag */); | |
| 1001 | |
| 1002 Visitor visitor(resources); | |
| 1003 GetContext().Apply(visitor, query, ResourceType_Study, 0 /* since */, 0 /* no limit */); | |
| 1004 } | |
| 1005 | |
| 1006 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 1007 { | |
| 1008 return new SingleDicomResource(GetContext(), ResourceType_Series, resource, GetTemplates()); | |
| 1009 } | |
| 1010 | |
| 1011 public: | |
| 1012 ListOfStudiesByDate(ServerContext& context, | |
| 1013 const std::string& year, | |
| 1014 const std::string& month, | |
| 1015 const Templates& templates) : | |
| 1016 ListOfResources(context, ResourceType_Study, templates), | |
| 1017 year_(year), | |
| 1018 month_(month) | |
| 1019 { | |
| 1020 if (year.size() != 4 || | |
| 1021 month.size() != 2) | |
| 1022 { | |
| 1023 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 1024 } | |
| 1025 } | |
| 1026 }; | |
| 1027 | |
| 1028 | |
| 1029 class OrthancWebDav::ListOfStudiesByMonth : public InternalNode | |
| 1030 { | |
| 1031 private: | |
| 1032 ServerContext& context_; | |
| 1033 std::string year_; | |
| 1034 const Templates& templates_; | |
| 1035 | |
| 1036 class Visitor : public ServerContext::ILookupVisitor | |
| 1037 { | |
| 1038 private: | |
| 1039 std::set<std::string> months_; | |
| 1040 | |
| 1041 public: | |
| 1042 const std::set<std::string>& GetMonths() const | |
| 1043 { | |
| 1044 return months_; | |
| 1045 } | |
| 1046 | |
| 1047 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
| 1048 { | |
| 1049 return false; // (*) | |
| 1050 } | |
| 1051 | |
| 1052 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 1053 { | |
| 1054 } | |
| 1055 | |
| 1056 virtual void Visit(const std::string& publicId, | |
| 1057 const std::string& instanceId /* unused */, | |
| 1058 const DicomMap& mainDicomTags, | |
| 1059 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE | |
| 1060 { | |
| 1061 std::string s; | |
| 1062 if (mainDicomTags.LookupStringValue(s, DICOM_TAG_STUDY_DATE, false) && | |
| 1063 s.size() == 8) | |
| 1064 { | |
| 1065 months_.insert(s.substr(4, 2)); // Get the month from "YYYYMMDD" | |
| 1066 } | |
| 1067 } | |
| 1068 }; | |
| 1069 | |
| 1070 protected: | |
| 1071 virtual void Refresh() ORTHANC_OVERRIDE | |
| 1072 { | |
| 1073 } | |
| 1074 | |
| 1075 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE | |
| 1076 { | |
| 1077 DatabaseLookup query; | |
| 1078 query.AddRestConstraint(DICOM_TAG_STUDY_DATE, year_ + "0101-" + year_ + "1231", | |
| 1079 true /* case sensitive */, true /* mandatory tag */); | |
| 1080 | |
| 1081 Visitor visitor; | |
| 1082 context_.Apply(visitor, query, ResourceType_Study, 0 /* since */, 0 /* no limit */); | |
| 1083 | |
| 1084 for (std::set<std::string>::const_iterator it = visitor.GetMonths().begin(); | |
| 1085 it != visitor.GetMonths().end(); ++it) | |
| 1086 { | |
| 1087 target.AddResource(new IWebDavBucket::Folder(year_ + "-" + *it)); | |
| 1088 } | |
| 1089 | |
| 1090 return true; | |
| 1091 } | |
| 1092 | |
|
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1093 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE |
| 4240 | 1094 { |
| 1095 if (path.size() != 7) // Format: "YYYY-MM" | |
| 1096 { | |
| 1097 throw OrthancException(ErrorCode_InternalError); | |
| 1098 } | |
| 1099 else | |
| 1100 { | |
| 1101 const std::string year = path.substr(0, 4); | |
| 1102 const std::string month = path.substr(5, 2); | |
| 1103 return new ListOfStudiesByDate(context_, year, month, templates_); | |
| 1104 } | |
| 1105 } | |
| 1106 | |
| 1107 public: | |
| 1108 ListOfStudiesByMonth(ServerContext& context, | |
| 1109 const std::string& year, | |
| 1110 const Templates& templates) : | |
| 1111 context_(context), | |
| 1112 year_(year), | |
| 1113 templates_(templates) | |
| 1114 { | |
| 1115 if (year_.size() != 4) | |
| 1116 { | |
| 1117 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 1118 } | |
| 1119 } | |
| 1120 }; | |
| 1121 | |
| 1122 | |
| 1123 class OrthancWebDav::ListOfStudiesByYear : public InternalNode | |
| 1124 { | |
| 1125 private: | |
| 1126 ServerContext& context_; | |
| 1127 const Templates& templates_; | |
| 1128 | |
| 1129 protected: | |
| 1130 virtual void Refresh() ORTHANC_OVERRIDE | |
| 1131 { | |
| 1132 } | |
| 1133 | |
| 1134 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE | |
| 1135 { | |
| 1136 std::list<std::string> resources; | |
| 1137 context_.GetIndex().GetAllUuids(resources, ResourceType_Study); | |
| 1138 | |
| 1139 std::set<std::string> years; | |
| 1140 | |
| 1141 for (std::list<std::string>::const_iterator it = resources.begin(); it != resources.end(); ++it) | |
| 1142 { | |
| 1143 DicomMap tags; | |
| 1144 std::string studyDate; | |
| 1145 if (context_.GetIndex().GetMainDicomTags(tags, *it, ResourceType_Study, ResourceType_Study) && | |
| 1146 tags.LookupStringValue(studyDate, DICOM_TAG_STUDY_DATE, false) && | |
| 1147 studyDate.size() == 8) | |
| 1148 { | |
| 1149 years.insert(studyDate.substr(0, 4)); // Get the year from "YYYYMMDD" | |
| 1150 } | |
| 1151 } | |
| 1152 | |
| 1153 for (std::set<std::string>::const_iterator it = years.begin(); it != years.end(); ++it) | |
| 1154 { | |
| 1155 target.AddResource(new IWebDavBucket::Folder(*it)); | |
| 1156 } | |
| 1157 | |
| 1158 return true; | |
| 1159 } | |
| 1160 | |
|
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1161 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE |
| 4240 | 1162 { |
| 1163 return new ListOfStudiesByMonth(context_, path, templates_); | |
| 1164 } | |
| 1165 | |
| 1166 public: | |
| 1167 ListOfStudiesByYear(ServerContext& context, | |
| 1168 const Templates& templates) : | |
| 1169 context_(context), | |
| 1170 templates_(templates) | |
| 1171 { | |
| 1172 } | |
| 1173 }; | |
| 1174 | |
| 1175 | |
|
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1176 class OrthancWebDav::DicomDeleteVisitor : public ServerContext::ILookupVisitor |
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1177 { |
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1178 private: |
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1179 ServerContext& context_; |
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1180 ResourceType level_; |
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1181 |
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1182 public: |
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1183 DicomDeleteVisitor(ServerContext& context, |
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1184 ResourceType level) : |
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1185 context_(context), |
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1186 level_(level) |
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1187 { |
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1188 } |
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1189 |
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1190 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE |
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1191 { |
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1192 return false; // (*) |
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1193 } |
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1194 |
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1195 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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1196 { |
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1197 } |
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1198 |
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1199 virtual void Visit(const std::string& publicId, |
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1200 const std::string& instanceId /* unused */, |
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1201 const DicomMap& mainDicomTags /* unused */, |
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1202 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE |
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1203 { |
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1204 Json::Value info; |
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1205 context_.DeleteResource(info, publicId, level_); |
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1206 } |
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1207 }; |
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1208 |
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1209 |
| 4240 | 1210 void OrthancWebDav::AddVirtualFile(Collection& collection, |
| 1211 const UriComponents& path, | |
| 1212 const std::string& filename) | |
| 1213 { | |
| 1214 MimeType mime; | |
| 1215 std::string content; | |
| 4246 | 1216 boost::posix_time::ptime modification; // Unused, let the date be set to "GetNow()" |
| 4240 | 1217 |
| 1218 UriComponents p = path; | |
| 1219 p.push_back(filename); | |
| 1220 | |
| 1221 if (GetFileContent(mime, content, modification, p)) | |
| 1222 { | |
| 1223 std::unique_ptr<File> f(new File(filename)); | |
| 1224 f->SetMimeType(mime); | |
| 1225 f->SetContentLength(content.size()); | |
| 1226 collection.AddResource(f.release()); | |
| 1227 } | |
| 1228 } | |
| 1229 | |
| 1230 | |
| 1231 void OrthancWebDav::UploadWorker(OrthancWebDav* that) | |
| 1232 { | |
| 1233 assert(that != NULL); | |
| 1234 | |
| 1235 boost::posix_time::ptime lastModification = GetNow(); | |
| 1236 | |
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1237 while (that->uploadRunning_) |
| 4240 | 1238 { |
| 1239 std::unique_ptr<IDynamicObject> obj(that->uploadQueue_.Dequeue(100)); | |
| 1240 if (obj.get() != NULL) | |
| 1241 { | |
| 1242 that->Upload(reinterpret_cast<const SingleValueObject<std::string>&>(*obj).GetValue()); | |
| 1243 lastModification = GetNow(); | |
| 1244 } | |
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1245 else if (GetNow() - lastModification > boost::posix_time::seconds(30)) |
| 4240 | 1246 { |
|
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1247 /** |
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1248 * After every 30 seconds of inactivity, remove the empty |
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1249 * folders. This delay is needed to avoid removing |
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1250 * just-created folders before the remote WebDAV has time to |
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1251 * write files into it. |
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1252 **/ |
|
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1253 LOG(TRACE) << "Cleaning up the empty WebDAV upload folders"; |
| 4240 | 1254 that->uploads_.RemoveEmptyFolders(); |
| 1255 lastModification = GetNow(); | |
| 1256 } | |
| 1257 } | |
| 1258 } | |
| 1259 | |
| 1260 | |
| 1261 void OrthancWebDav::Upload(const std::string& path) | |
| 1262 { | |
| 1263 UriComponents uri; | |
| 1264 Toolbox::SplitUriComponents(uri, path); | |
| 1265 | |
| 1266 LOG(INFO) << "Upload from WebDAV: " << path; | |
| 1267 | |
| 1268 MimeType mime; | |
| 1269 std::string content; | |
| 1270 boost::posix_time::ptime time; | |
| 1271 if (uploads_.GetFileContent(mime, content, time, uri)) | |
| 1272 { | |
|
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1273 bool success = false; |
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1274 |
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1275 if (ZipReader::IsZipMemoryBuffer(content)) |
| 4240 | 1276 { |
|
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1277 // New in Orthanc 1.8.2 |
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|
1278 std::unique_ptr<ZipReader> reader(ZipReader::CreateFromMemory(content)); |
|
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|
1279 |
| 4386 | 1280 std::string filename, uncompressedFile; |
| 1281 while (reader->ReadNextFile(filename, uncompressedFile)) | |
|
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|
1282 { |
| 4386 | 1283 if (!uncompressedFile.empty()) |
|
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|
1284 { |
|
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|
1285 LOG(INFO) << "Uploading DICOM file extracted from a ZIP archive in WebDAV: " << filename; |
|
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|
1286 |
|
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|
1287 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(uncompressedFile)); |
|
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|
1288 instance->SetOrigin(DicomInstanceOrigin::FromWebDav()); |
|
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|
1289 |
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|
1290 std::string publicId; |
|
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|
1291 |
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|
1292 try |
|
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|
1293 { |
|
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|
1294 context_.Store(publicId, *instance, StoreInstanceMode_Default); |
|
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|
1295 } |
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|
1296 catch (OrthancException& e) |
|
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|
1297 { |
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|
1298 if (e.GetErrorCode() == ErrorCode_BadFileFormat) |
|
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|
1299 { |
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|
1300 LOG(ERROR) << "Cannot import non-DICOM file from ZIP archive: " << filename; |
|
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1301 } |
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|
1302 } |
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|
1303 } |
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|
1304 } |
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|
1305 |
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|
1306 success = true; |
| 4240 | 1307 } |
|
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|
1308 else |
| 4240 | 1309 { |
|
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changeset
|
1310 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(content)); |
|
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|
1311 instance->SetOrigin(DicomInstanceOrigin::FromWebDav()); |
|
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|
1312 |
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|
1313 try |
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|
1314 { |
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|
1315 std::string publicId; |
|
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
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diff
changeset
|
1316 ServerContext::StoreResult result = context_.Store(publicId, *instance, StoreInstanceMode_Default); |
|
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
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diff
changeset
|
1317 if (result.GetStatus() == StoreStatus_Success || |
|
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added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
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changeset
|
1318 result.GetStatus() == StoreStatus_AlreadyStored) |
|
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|
1319 { |
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|
1320 LOG(INFO) << "Successfully imported DICOM instance from WebDAV: " |
|
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|
1321 << path << " (Orthanc ID: " << publicId << ")"; |
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1322 success = true; |
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1323 } |
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1324 } |
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|
1325 catch (OrthancException& e) |
|
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1326 { |
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1327 } |
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1328 } |
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1329 |
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|
1330 uploads_.DeleteItem(uri); |
|
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1331 |
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|
1332 if (!success) |
|
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1333 { |
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|
1334 LOG(WARNING) << "Cannot import DICOM instance from WebWAV (maybe not a DICOM file): " << path; |
| 4240 | 1335 } |
| 1336 } | |
| 1337 } | |
| 1338 | |
| 1339 | |
|
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|
1340 OrthancWebDav::INode& OrthancWebDav::GetRootNode(const std::string& rootPath) |
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|
1341 { |
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|
1342 if (rootPath == BY_PATIENTS) |
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|
1343 { |
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1344 return *patients_; |
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1345 } |
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|
1346 else if (rootPath == BY_STUDIES) |
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1347 { |
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1348 return *studies_; |
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1349 } |
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1350 else if (rootPath == BY_DATES) |
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|
1351 { |
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1352 return *dates_; |
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1353 } |
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|
1354 else |
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|
1355 { |
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1356 throw OrthancException(ErrorCode_InternalError); |
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1357 } |
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1358 } |
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1359 |
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1360 |
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|
1361 OrthancWebDav::OrthancWebDav(ServerContext& context, |
|
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1362 bool allowDicomDelete, |
|
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|
1363 bool allowUpload) : |
| 4240 | 1364 context_(context), |
|
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|
1365 allowDicomDelete_(allowDicomDelete), |
|
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|
1366 allowUpload_(allowUpload), |
| 4240 | 1367 uploads_(false /* store uploads as temporary files */), |
|
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|
1368 uploadRunning_(false) |
| 4240 | 1369 { |
| 1370 patientsTemplates_[ResourceType_Patient] = "{{PatientID}} - {{PatientName}}"; | |
| 1371 patientsTemplates_[ResourceType_Study] = "{{StudyDate}} - {{StudyDescription}}"; | |
| 1372 patientsTemplates_[ResourceType_Series] = "{{Modality}} - {{SeriesDescription}}"; | |
| 1373 | |
| 1374 studiesTemplates_[ResourceType_Study] = "{{PatientID}} - {{PatientName}} - {{StudyDescription}}"; | |
| 1375 studiesTemplates_[ResourceType_Series] = patientsTemplates_[ResourceType_Series]; | |
| 1376 | |
| 1377 patients_.reset(new RootNode(context, ResourceType_Patient, patientsTemplates_)); | |
| 1378 studies_.reset(new RootNode(context, ResourceType_Study, studiesTemplates_)); | |
| 1379 dates_.reset(new ListOfStudiesByYear(context, studiesTemplates_)); | |
| 1380 } | |
| 1381 | |
| 1382 | |
| 1383 bool OrthancWebDav::IsExistingFolder(const UriComponents& path) | |
| 1384 { | |
| 1385 if (path.empty()) | |
| 1386 { | |
| 1387 return true; | |
| 1388 } | |
| 1389 else if (path[0] == BY_UIDS) | |
| 1390 { | |
| 1391 return (path.size() <= 3 && | |
|
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1392 (path.size() != 3 || path[2] != STUDY_INFO)); |
| 4240 | 1393 } |
|
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1394 else if (path[0] == BY_PATIENTS || |
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|
1395 path[0] == BY_STUDIES || |
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|
1396 path[0] == BY_DATES) |
| 4240 | 1397 { |
| 4252 | 1398 IWebDavBucket::Collection collection; |
| 1399 return GetRootNode(path[0]).ListCollection(collection, UriComponents(path.begin() + 1, path.end())); | |
| 4240 | 1400 } |
|
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1401 else if (allowUpload_ && |
|
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1402 path[0] == UPLOADS) |
| 4240 | 1403 { |
| 1404 return uploads_.IsExistingFolder(UriComponents(path.begin() + 1, path.end())); | |
| 1405 } | |
| 1406 else | |
| 1407 { | |
| 1408 return false; | |
| 1409 } | |
| 1410 } | |
| 1411 | |
| 1412 | |
| 1413 bool OrthancWebDav::ListCollection(Collection& collection, | |
| 1414 const UriComponents& path) | |
| 1415 { | |
| 1416 if (path.empty()) | |
| 1417 { | |
| 4241 | 1418 collection.AddResource(new Folder(BY_DATES)); |
| 4240 | 1419 collection.AddResource(new Folder(BY_PATIENTS)); |
| 1420 collection.AddResource(new Folder(BY_STUDIES)); | |
| 1421 collection.AddResource(new Folder(BY_UIDS)); | |
|
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1422 |
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1423 if (allowUpload_) |
|
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1424 { |
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1425 collection.AddResource(new Folder(UPLOADS)); |
|
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1426 } |
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|
1427 |
| 4240 | 1428 return true; |
| 1429 } | |
| 1430 else if (path[0] == BY_UIDS) | |
| 1431 { | |
| 1432 DatabaseLookup query; | |
| 1433 ResourceType level; | |
| 1434 size_t limit = 0; // By default, no limits | |
| 1435 | |
| 1436 if (path.size() == 1) | |
| 1437 { | |
| 1438 level = ResourceType_Study; | |
|
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1439 limit = 0; // TODO - Should we limit here? |
| 4240 | 1440 } |
| 1441 else if (path.size() == 2) | |
| 1442 { | |
|
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1443 AddVirtualFile(collection, path, STUDY_INFO); |
| 4240 | 1444 |
| 1445 level = ResourceType_Series; | |
| 1446 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1447 true /* case sensitive */, true /* mandatory tag */); | |
| 1448 } | |
| 1449 else if (path.size() == 3) | |
| 1450 { | |
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1451 AddVirtualFile(collection, path, SERIES_INFO); |
| 4240 | 1452 |
| 1453 level = ResourceType_Instance; | |
| 1454 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1455 true /* case sensitive */, true /* mandatory tag */); | |
| 1456 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1457 true /* case sensitive */, true /* mandatory tag */); | |
| 1458 } | |
| 1459 else | |
| 1460 { | |
| 1461 return false; | |
| 1462 } | |
| 1463 | |
| 1464 DicomIdentifiersVisitor visitor(context_, collection, level); | |
| 1465 context_.Apply(visitor, query, level, 0 /* since */, limit); | |
| 1466 | |
| 1467 return true; | |
| 1468 } | |
|
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1469 else if (path[0] == BY_PATIENTS || |
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1470 path[0] == BY_STUDIES || |
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1471 path[0] == BY_DATES) |
| 4240 | 1472 { |
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1473 return GetRootNode(path[0]).ListCollection(collection, UriComponents(path.begin() + 1, path.end())); |
| 4240 | 1474 } |
|
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1475 else if (allowUpload_ && |
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1476 path[0] == UPLOADS) |
| 4240 | 1477 { |
| 1478 return uploads_.ListCollection(collection, UriComponents(path.begin() + 1, path.end())); | |
| 1479 } | |
| 1480 else | |
| 1481 { | |
| 1482 return false; | |
| 1483 } | |
| 1484 } | |
| 1485 | |
| 1486 | |
| 1487 bool OrthancWebDav::GetFileContent(MimeType& mime, | |
| 1488 std::string& content, | |
| 1489 boost::posix_time::ptime& modificationTime, | |
| 1490 const UriComponents& path) | |
| 1491 { | |
| 1492 if (path.empty()) | |
| 1493 { | |
| 1494 return false; | |
| 1495 } | |
| 1496 else if (path[0] == BY_UIDS) | |
| 1497 { | |
| 1498 if (path.size() == 3 && | |
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1499 path[2] == STUDY_INFO) |
| 4240 | 1500 { |
| 1501 DatabaseLookup query; | |
| 1502 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1503 true /* case sensitive */, true /* mandatory tag */); | |
| 1504 | |
| 1505 OrthancJsonVisitor visitor(context_, content, ResourceType_Study); | |
| 1506 context_.Apply(visitor, query, ResourceType_Study, 0 /* since */, 0 /* no limit */); | |
| 1507 | |
| 1508 mime = MimeType_Json; | |
| 1509 return visitor.IsSuccess(); | |
| 1510 } | |
| 1511 else if (path.size() == 4 && | |
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1512 path[3] == SERIES_INFO) |
| 4240 | 1513 { |
| 1514 DatabaseLookup query; | |
| 1515 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1516 true /* case sensitive */, true /* mandatory tag */); | |
| 1517 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1518 true /* case sensitive */, true /* mandatory tag */); | |
| 1519 | |
| 1520 OrthancJsonVisitor visitor(context_, content, ResourceType_Series); | |
| 1521 context_.Apply(visitor, query, ResourceType_Series, 0 /* since */, 0 /* no limit */); | |
| 1522 | |
| 1523 mime = MimeType_Json; | |
| 1524 return visitor.IsSuccess(); | |
| 1525 } | |
| 1526 else if (path.size() == 4 && | |
| 1527 boost::ends_with(path[3], ".dcm")) | |
| 1528 { | |
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1529 const std::string sopInstanceUid = path[3].substr(0, path[3].size() - 4); |
| 4240 | 1530 |
| 1531 DatabaseLookup query; | |
| 1532 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1533 true /* case sensitive */, true /* mandatory tag */); | |
| 1534 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1535 true /* case sensitive */, true /* mandatory tag */); | |
| 1536 query.AddRestConstraint(DICOM_TAG_SOP_INSTANCE_UID, sopInstanceUid, | |
| 1537 true /* case sensitive */, true /* mandatory tag */); | |
| 1538 | |
| 1539 DicomFileVisitor visitor(context_, content, modificationTime); | |
| 1540 context_.Apply(visitor, query, ResourceType_Instance, 0 /* since */, 0 /* no limit */); | |
| 1541 | |
| 1542 mime = MimeType_Dicom; | |
| 1543 return visitor.IsSuccess(); | |
| 1544 } | |
| 1545 else | |
| 1546 { | |
| 1547 return false; | |
| 1548 } | |
| 1549 } | |
|
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1550 else if (path[0] == BY_PATIENTS || |
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1551 path[0] == BY_STUDIES || |
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1552 path[0] == BY_DATES) |
| 4240 | 1553 { |
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1554 return GetRootNode(path[0]).GetFileContent(mime, content, modificationTime, UriComponents(path.begin() + 1, path.end())); |
| 4241 | 1555 } |
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1556 else if (allowUpload_ && |
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1557 path[0] == UPLOADS) |
| 4240 | 1558 { |
| 1559 return uploads_.GetFileContent(mime, content, modificationTime, UriComponents(path.begin() + 1, path.end())); | |
| 1560 } | |
| 1561 else | |
| 1562 { | |
| 1563 return false; | |
| 1564 } | |
| 1565 } | |
| 1566 | |
| 1567 | |
| 1568 bool OrthancWebDav::StoreFile(const std::string& content, | |
| 1569 const UriComponents& path) | |
| 1570 { | |
|
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1571 if (allowUpload_ && |
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1572 path.size() >= 1 && |
| 4240 | 1573 path[0] == UPLOADS) |
| 1574 { | |
| 1575 UriComponents subpath(UriComponents(path.begin() + 1, path.end())); | |
| 1576 | |
| 1577 if (uploads_.StoreFile(content, subpath)) | |
| 1578 { | |
| 1579 if (!content.empty()) | |
| 1580 { | |
| 1581 uploadQueue_.Enqueue(new SingleValueObject<std::string>(Toolbox::FlattenUri(subpath))); | |
| 1582 } | |
| 1583 return true; | |
| 1584 } | |
| 1585 else | |
| 1586 { | |
| 1587 return false; | |
| 1588 } | |
| 1589 } | |
| 1590 else | |
| 1591 { | |
| 1592 return false; | |
| 1593 } | |
| 1594 } | |
| 1595 | |
| 1596 | |
| 1597 bool OrthancWebDav::CreateFolder(const UriComponents& path) | |
| 1598 { | |
|
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1599 if (allowUpload_ && |
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1600 path.size() >= 1 && |
| 4240 | 1601 path[0] == UPLOADS) |
| 1602 { | |
| 1603 return uploads_.CreateFolder(UriComponents(path.begin() + 1, path.end())); | |
| 1604 } | |
| 1605 else | |
| 1606 { | |
| 1607 return false; | |
| 1608 } | |
| 1609 } | |
| 1610 | |
| 1611 | |
| 1612 bool OrthancWebDav::DeleteItem(const std::vector<std::string>& path) | |
| 1613 { | |
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1614 if (path.empty()) |
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1615 { |
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1616 return false; |
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1617 } |
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1618 else if (path[0] == BY_UIDS && |
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1619 path.size() >= 2 && |
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1620 path.size() <= 4) |
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1621 { |
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1622 if (allowDicomDelete_) |
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1623 { |
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1624 ResourceType level; |
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1625 DatabaseLookup query; |
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1626 |
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1627 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], |
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1628 true /* case sensitive */, true /* mandatory tag */); |
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1629 level = ResourceType_Study; |
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1630 |
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1631 if (path.size() >= 3) |
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1632 { |
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1633 if (path[2] == STUDY_INFO) |
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1634 { |
| 4252 | 1635 return true; // Allow deletion of virtual files (to avoid blocking recursive DELETE) |
|
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1636 } |
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1637 |
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1638 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], |
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1639 true /* case sensitive */, true /* mandatory tag */); |
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1640 level = ResourceType_Series; |
|
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1641 } |
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1642 |
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1643 if (path.size() == 4) |
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1644 { |
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1645 if (path[3] == SERIES_INFO) |
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1646 { |
| 4252 | 1647 return true; // Allow deletion of virtual files (to avoid blocking recursive DELETE) |
|
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1648 } |
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1649 else if (boost::ends_with(path[3], ".dcm")) |
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1650 { |
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1651 const std::string sopInstanceUid = path[3].substr(0, path[3].size() - 4); |
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1652 |
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1653 query.AddRestConstraint(DICOM_TAG_SOP_INSTANCE_UID, sopInstanceUid, |
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1654 true /* case sensitive */, true /* mandatory tag */); |
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1655 level = ResourceType_Instance; |
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1656 } |
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1657 else |
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1658 { |
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1659 return false; |
|
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1660 } |
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1661 } |
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1662 |
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1663 DicomDeleteVisitor visitor(context_, level); |
| 4252 | 1664 context_.Apply(visitor, query, level, 0 /* since */, 0 /* no limit */); |
|
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1665 return true; |
|
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1666 } |
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1667 else |
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1668 { |
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1669 return false; // read-only |
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1670 } |
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|
1671 } |
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1672 else if (path[0] == BY_PATIENTS || |
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1673 path[0] == BY_STUDIES || |
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1674 path[0] == BY_DATES) |
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1675 { |
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1676 if (allowDicomDelete_) |
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1677 { |
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1678 return GetRootNode(path[0]).DeleteItem(UriComponents(path.begin() + 1, path.end())); |
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1679 } |
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1680 else |
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1681 { |
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1682 return false; // read-only |
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1683 } |
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1684 } |
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1685 else if (allowUpload_ && |
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1686 path[0] == UPLOADS) |
| 4240 | 1687 { |
| 1688 return uploads_.DeleteItem(UriComponents(path.begin() + 1, path.end())); | |
| 1689 } | |
| 1690 else | |
| 1691 { | |
|
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1692 return false; |
| 4240 | 1693 } |
| 1694 } | |
| 1695 | |
| 1696 | |
| 1697 void OrthancWebDav::Start() | |
| 1698 { | |
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1699 if (uploadRunning_) |
| 4240 | 1700 { |
| 1701 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 1702 } | |
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1703 else if (allowUpload_) |
| 4240 | 1704 { |
| 1705 LOG(INFO) << "Starting the WebDAV upload thread"; | |
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1706 uploadRunning_ = true; |
| 4240 | 1707 uploadThread_ = boost::thread(UploadWorker, this); |
| 1708 } | |
| 1709 } | |
| 1710 | |
| 1711 | |
| 1712 void OrthancWebDav::Stop() | |
| 1713 { | |
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1714 if (uploadRunning_) |
| 4240 | 1715 { |
| 1716 LOG(INFO) << "Stopping the WebDAV upload thread"; | |
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1717 uploadRunning_ = false; |
| 4240 | 1718 if (uploadThread_.joinable()) |
| 1719 { | |
| 1720 uploadThread_.join(); | |
| 1721 } | |
| 1722 } | |
| 1723 } | |
| 1724 } |